Psyllid ID: psy7941

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEccccEEEEEEEEccccEEEEEEEEEEEEEccccEEEEccccccEEEEEEccccEEEEEccEEEEccccEEEEEccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEcccccccccccccEEEcccccEEEEEEEcEEccccEEEEEcccEEEEEccccccccEEEEEEccEEEEccccccccEEEEEEccccccccEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEccccEEEEEEEccccccccccccccEEEEccccEEEEEEEccccEEEEEEcccEEEEEccEEEEcccEEEEEEcccccEEEEEEEEEHcccccEEEEEcccccccEEEEEEEEEccccccccccccEEEEccccEEEEEEEEEccccEEEEEEccccEEEEccccccEEEEEEEccEEEEEEEEcHHHcccEEEEEEccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mvpvrgfepdflyplenvtiaqgRDAIFTCVVNnlgghrvsssvtdthvntggsivfptdssaMKVAWIKADTKAVLAIHEHVItnnarlsvthndantwtlNIRSvrredrgyymcqvntnpmtkQMAFLEvvippdisseetsgdmmvpeggsaKLVCkakgyptpkitwrrednkeiivrsnppssqkvfSVESEVLSLTKVtrsemgayqciaangvpptvsKRLMLHVHCTYL
Flexible Loop (DISEMBL)
mvpvrgfepdfLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGgsivfptdssAMKVAWIKADTKAVLAIHEHVItnnarlsvthndantwtlnirsvrredRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKgyptpkitwrrednkeiivrsnppssqkvfsvESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Low Complexity Region (SEG)
MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Disordered region (IsUnstruct)
******FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP*********************LVCKAKGYPTPKITWRR***********************EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY*
Disordered Region (DISOPRED)
**P********LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII*****************VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Disordered Region (DISEMBL)
MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Disordered Region (DISPRO)
MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.668	0.455	0.292	6e-17
Q90773	353	Protein CEPU-1 OS=Gallus	yes	N/A	0.798	0.538	0.293	6e-17
Q98892	337	Opioid-binding protein/ce	no	N/A	0.768	0.543	0.296	1e-15
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.684	0.454	0.296	6e-15
Q58DA5	345	Neurotrimin OS=Bos taurus	yes	N/A	0.798	0.550	0.272	7e-15
Q99PJ0	344	Neurotrimin OS=Mus muscul	yes	N/A	0.798	0.552	0.272	9e-15
Q9P121	344	Neurotrimin OS=Homo sapie	yes	N/A	0.798	0.552	0.272	1e-14
Q5IS61	345	Opioid-binding protein/ce	yes	N/A	0.773	0.533	0.283	3e-14
Q14982	345	Opioid-binding protein/ce	no	N/A	0.773	0.533	0.283	3e-14
P11834	345	Opioid-binding protein/ce	no	N/A	0.773	0.533	0.283	3e-14

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 19/178 (10%)

Query: 66  VAWIKADTKAV-----LAIHEHVITNNARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQV 119
           V W+K D         ++    +I  ++R ++ ++ A+ T+TL I+ ++  D G+Y CQV
Sbjct: 53  VLWMKVDRNRQVDPLPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQV 112

Query: 120 ---NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
                N +T ++  L+V  PP IS   T   ++V EG + +L C A GYP P+++WRRE+
Sbjct: 113 IIGLNNKITAEVD-LQVRRPPVISDNSTRS-LVVSEGQAVRLECYAGGYPAPRVSWRREN 170

Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           N  +      P+   ++     VL ++++ + + G Y C+A NGV     + + + V 
Sbjct: 171 NAIL------PTGGSIY--RGNVLKISRIGKEDRGTYYCVAENGVGKGARRNIAVEVE 220

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|Q90773|CEPU1_CHICK Protein CEPU-1 OS=Gallus gallus PE=1 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 45/235 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C V+N    RV+                    
Sbjct: 27  VPVRSGDATFPKAMDNVTVRQGESATLRCSVDN----RVT-------------------- 62

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+  +  ++L         + R+ +  N    +++ I  V   D G Y C V T
Sbjct: 63  ---RVAWL--NRSSILYAGNDKWCLDPRVVLLANTKTQYSIQIHDVDVYDEGPYTCSVQT 117

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  + V + P I+  ETS D+ + EGG+  L C A G P P ITWR    K 
Sbjct: 118 DNHPKTSRVHLI-VQVSPKIT--ETSSDISINEGGNVSLTCIATGRPDPTITWRHISPKA 174

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +            F  E E L +T +TR + G Y+C A+N V   V +R+ + V+
Sbjct: 175 V-----------GFISEDEYLEITGITREQSGEYECSASNDVAAPVVQRVKVTVN 218

It may be a cellular address molecule specific to Purkinje cells. It may represent a receptor or a subunit of a receptor complex.

Gallus gallus (taxid: 9031)

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 46/229 (20%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C V                           D 
Sbjct: 22  VPVRSGDATFPKAMDNVTVRQGESATLRCTV---------------------------DD 54

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T       +  I N  R+ +  N    +++ I +V   D G Y C V T
Sbjct: 55  RVRRVAWLNRSTILYAGNDKWSIDN--RVVILSNTKTQYSIKIHNVDVYDEGPYTCSVQT 112

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  + V +PP I +   S D+ V EG S  L+C A G P P +TWR    K 
Sbjct: 113 DNHPKTSRVHLI-VQVPPQIVN--ISSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSGK- 168

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK 227
                      + F  E E L +T +TR + G Y+C A N V  P V K
Sbjct: 169 ----------GQGFVSEDEYLEITGITREQSGEYECSAVNDVAVPDVRK 207

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 16/179 (8%)

Query: 50  NTGGSIVFPTDSSAMK---VAWIKADTKAV-LAIHEHVITNNARLSVTHN-DANTWTLNI 104
           + GG++ F       K   V ++K D+  V L+    ++  ++R S+ ++ +++T+ L I
Sbjct: 41  DIGGTVEFDCSVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQI 100

Query: 105 RSVRREDRGYYMCQVNTNPMTKQMAFLEVVI--PPDISSEETSGDMMVPEGGSAKLVCKA 162
           + ++  D G Y CQV  + + K  A +++ +  PP IS   T   ++  EG   ++ C A
Sbjct: 101 KDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVISDNSTQS-VVASEGSEVQMECYA 159

Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            GYPTP ITWRRE+N  +      P+    +      L +  V + + G Y C+A NGV
Sbjct: 160 SGYPTPTITWRRENNAIL------PTDSATYV--GNTLRIKSVKKEDRGTYYCVADNGV 210

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|Q58DA5|NTRI_BOVIN Neurotrimin OS=Bos taurus GN=NTM PE=2 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 45/235 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C ++N    RV+                    
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTIDN----RVT-------------------- 64

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L         + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 65  ---RVAWLNRST--ILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  +  V P  +   E S D+ + EG +  L C A G P P +TWR    K 
Sbjct: 120 DNHPKTSRVHLIVQVSPKIV---EISSDISINEGNNISLTCIATGRPEPTVTWRHISPKA 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +            F  E E L +  +TR + G Y+C A+N V   V +R+ + V+
Sbjct: 177 V-----------GFVSEDEYLEIQGITREQSGYYECSASNDVAAPVVRRVKVTVN 220

Neural cell adhesion molecule.

Bos taurus (taxid: 9913)

>sp|Q99PJ0|NTRI_MOUSE Neurotrimin OS=Mus musculus GN=Ntm PE=2 SV=2

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 45/235 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C ++N    RV+                    
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTIDN----RVT-------------------- 64

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L         + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 65  ---RVAWLNRST--ILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  +  V P  +   E S D+ + EG +  L C A G P P +TWR    K 
Sbjct: 120 DNHPKTSRVHLIVQVSPKIV---EISSDISINEGNNISLTCIATGRPEPTVTWRHISPKA 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +            F  E E L +  +TR + G Y+C A+N V   V +R+ + V+
Sbjct: 177 V-----------GFVSEDEYLEIQGITREQSGEYECSASNDVAAPVVRRVKVTVN 220

Neural cell adhesion molecule.

Mus musculus (taxid: 10090)

>sp|Q9P121|NTRI_HUMAN Neurotrimin OS=Homo sapiens GN=NTM PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 45/235 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C ++N    RV+                    
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTIDN----RVT-------------------- 64

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L         + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 65  ---RVAWLNRST--ILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  +  V P  +   E S D+ + EG +  L C A G P P +TWR    K 
Sbjct: 120 DNHPKTSRVHLIVQVSPKIV---EISSDISINEGNNISLTCIATGRPEPTVTWRHISPKA 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +            F  E E L +  +TR + G Y+C A+N V   V +R+ + V+
Sbjct: 177 V-----------GFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVN 220

Neural cell adhesion molecule.

Homo sapiens (taxid: 9606)

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 45/229 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C +                           D 
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTI---------------------------DD 61

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L       + + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 62  RVTRVAWLNRST--ILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  + V +PP I +   S D+ V EG S  L+C A G P P +TWR    KE
Sbjct: 120 DNHPKTSRVHLI-VQVPPQIMN--ISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKE 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSK 227
                      + F  E E L ++ + R + G Y+C A N V  P V K
Sbjct: 177 ----------GQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRK 215

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

>sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 45/229 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C +                           D 
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTI---------------------------DD 61

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L       + + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 62  RVTRVAWLNRST--ILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  + V +PP I +   S D+ V EG S  L+C A G P P +TWR    KE
Sbjct: 120 DNHPKTSRVHLI-VQVPPQIMN--ISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKE 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSK 227
                      + F  E E L ++ + R + G Y+C A N V  P V K
Sbjct: 177 ----------GQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRK 215

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Homo sapiens (taxid: 9606)

>sp|P11834|OPCM_BOVIN Opioid-binding protein/cell adhesion molecule OS=Bos taurus GN=OPCML PE=1 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 45/229 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VPVR  +  F   ++NVT+ QG  A   C +                           D 
Sbjct: 29  VPVRSGDATFPKAMDNVTVRQGESATLRCTI---------------------------DD 61

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAW+   T  +L       + + R+ +  N    +++ I++V   D G Y C V T
Sbjct: 62  RVTRVAWLNRST--ILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQT 119

Query: 122 N--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           +  P T ++  + V +PP I +   S D+ V EG S  L+C A G P P +TWR    KE
Sbjct: 120 DNHPKTSRVHLI-VQVPPQIMN--ISSDVTVNEGSSVTLLCLAIGRPEPTVTWRHLSVKE 176

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSK 227
                      + F  E E L ++ + R + G Y+C A N V  P V K
Sbjct: 177 ----------GQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRK 215

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
357620070	383	hypothetical protein KGM_15280 [Danaus p	0.873	0.543	0.713	2e-92
332018263	412	Lachesin [Acromyrmex echinatior]	0.953	0.550	0.717	2e-92
380014902	417	PREDICTED: lachesin-like, partial [Apis	0.945	0.539	0.705	2e-91
383850610	441	PREDICTED: lachesin-like [Megachile rotu	0.936	0.505	0.702	2e-91
270014804	380	hypothetical protein TcasGA2_TC010786 [T	0.861	0.539	0.705	3e-91
189233905	530	PREDICTED: similar to CG32791 CG32791-PA	0.861	0.386	0.705	5e-91
328780526	446	PREDICTED: lachesin-like [Apis mellifera	0.936	0.5	0.702	2e-90
221500550	555	CG42343, isoform C [Drosophila melanogas	0.907	0.389	0.705	2e-88
242008755	377	lachesin precursor, putative [Pediculus	0.840	0.530	0.702	3e-88
157104327	343	hypothetical protein AaeL_AAEL004077 [Ae	0.861	0.597	0.696	1e-87

>gi|357620070|gb|EHJ72393.1| hypothetical protein KGM_15280 [Danaus plexippus]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/234 (71%), Positives = 181/234 (77%), Gaps = 26/234 (11%)

Query: 1   MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
           +VP  G EPDFLYPLENVTIAQGRDA FTCVVNNLGG+RV                    
Sbjct: 7   IVPALGLEPDFLYPLENVTIAQGRDATFTCVVNNLGGYRV-------------------- 46

Query: 61  SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120
                 AWIKADTKA+LAIHEHVITNNARLSVTHND NTWTLNIR V+REDRG YMCQVN
Sbjct: 47  ------AWIKADTKAILAIHEHVITNNARLSVTHNDYNTWTLNIRGVKREDRGQYMCQVN 100

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
           T+PM  Q AFLEVVIPPDI  EETSGDMMVPEGG AKLVCKA+G+P PKI WRRED  +I
Sbjct: 101 TDPMKMQTAFLEVVIPPDIIYEETSGDMMVPEGGGAKLVCKARGFPPPKIVWRREDGGDI 160

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           I R  P    KV S+E E+++LTKVTRSEMGAY CIAANGVPP+VSKR+MLHVH
Sbjct: 161 ISRGGPQGKTKVTSLEGEIVNLTKVTRSEMGAYLCIAANGVPPSVSKRIMLHVH 214

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018263|gb|EGI58868.1| Lachesin [Acromyrmex echinatior]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 186/234 (79%), Gaps = 7/234 (2%)

Query: 1   MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
            V V G EPDF YPLENVTI QGRDA FTCVVNNLGG+RVS S + +  ++G        
Sbjct: 5   FVSVTGLEPDFAYPLENVTIPQGRDATFTCVVNNLGGYRVSPSSSASGDHSGNV------ 58

Query: 61  SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN 120
               +VAWIKADTKA+LAIHEHVITNNARLSVTH+D NTWTLNIRS RREDRG YMCQVN
Sbjct: 59  KGNARVAWIKADTKAILAIHEHVITNNARLSVTHSDYNTWTLNIRSARREDRGIYMCQVN 118

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
           T+PM  Q AFLEVVIPPDI SEETS DMMVPEGG+AKLVCKA+GYP P I W+RED  EI
Sbjct: 119 TDPMKSQSAFLEVVIPPDIISEETSNDMMVPEGGAAKLVCKARGYPKPDIVWKREDGAEI 178

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           I RS  P   K+ S E EVL+L+KVTR EMGAY CIA+NGVPP+VSKR+MLHVH
Sbjct: 179 ISRSG-PGKTKIPSAEGEVLTLSKVTRGEMGAYLCIASNGVPPSVSKRMMLHVH 231

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014902|ref|XP_003691454.1| PREDICTED: lachesin-like, partial [Apis florea]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/234 (70%), Positives = 189/234 (80%), Gaps = 9/234 (3%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           V V G EPDF+YPLEN+TI+QGRDA FTCVV+NLGG+RVS S + +  ++GG+       
Sbjct: 14  VSVTGLEPDFVYPLENLTISQGRDATFTCVVSNLGGYRVSPSSSVSGDHSGGA------- 66

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +VAWIKADTKAVLAIHEHVITNNARLSVTH+D NTWTLNIR VRREDRG YMCQVNT
Sbjct: 67  -KARVAWIKADTKAVLAIHEHVITNNARLSVTHSDYNTWTLNIRGVRREDRGIYMCQVNT 125

Query: 122 NPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
           +PM  Q AFLEVVIPPDI SEETS D+MVPEGGSAKLVCKA+GYP P I W+RED  EII
Sbjct: 126 DPMKSQSAFLEVVIPPDIISEETSNDLMVPEGGSAKLVCKARGYPKPDIVWKREDGAEII 185

Query: 182 VRSNPPSSQ-KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            R+     + K+ S E E L+L+KVTRSEMG Y CIA+NGVPP+VSKR+MLHVH
Sbjct: 186 SRAGLSGGKTKISSAEGETLTLSKVTRSEMGTYLCIASNGVPPSVSKRMMLHVH 239

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850610|ref|XP_003700888.1| PREDICTED: lachesin-like [Megachile rotundata]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 190/232 (81%), Gaps = 9/232 (3%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V G EPDF+ PL+NVTI QGRDA FTCVVNNLGG+RVS S + +  ++GG+         
Sbjct: 38  VTGLEPDFVIPLQNVTIPQGRDATFTCVVNNLGGYRVSPSSSASRDHSGGA--------K 89

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
            +VAWIKADTKA+LAIHEHVITNNARLSVTH+D+NTWTLNIR+VRREDRG YMCQVNT+P
Sbjct: 90  ARVAWIKADTKAILAIHEHVITNNARLSVTHSDSNTWTLNIRAVRREDRGIYMCQVNTDP 149

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q AFLEVVIPPDI SEETS D+MVPEGGSAKLVCKA+GYP P+I W+RED  EII R
Sbjct: 150 MKSQSAFLEVVIPPDIISEETSNDLMVPEGGSAKLVCKARGYPKPEILWKREDGGEIISR 209

Query: 184 SNPPSSQ-KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +     + K+ + E E L+L+KVTRSEMGAY CIA+NGVPP+VSKR+MLHVH
Sbjct: 210 AGLSGGKTKIATAEGETLTLSKVTRSEMGAYLCIASNGVPPSVSKRMMLHVH 261

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014804|gb|EFA11252.1| hypothetical protein TcasGA2_TC010786 [Tribolium castaneum]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 182/231 (78%), Gaps = 26/231 (11%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V GFEPDFLYPLEN+T+ QGRDA FTCVVNNLGG+RV                       
Sbjct: 5   VSGFEPDFLYPLENITVPQGRDATFTCVVNNLGGYRV----------------------- 41

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
              AWIKADTKA+LAIHEHVITNNARLSVTHND NTWTLNIR+V+REDRG YMCQVNT+P
Sbjct: 42  ---AWIKADTKAILAIHEHVITNNARLSVTHNDFNTWTLNIRNVKREDRGQYMCQVNTDP 98

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q AFLEVVIPPDI  EETSGDMMVPEGGSAKLVCKA+GYP P I WRRED   I+ +
Sbjct: 99  MKMQTAFLEVVIPPDIIYEETSGDMMVPEGGSAKLVCKARGYPKPHIVWRREDGGAIVAK 158

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S+   ++++ SVE E+L+LTKVTRSEMGAY CIAANGVPP+VSKR+MLHVH
Sbjct: 159 SSTGRTERLTSVEGEMLTLTKVTRSEMGAYLCIAANGVPPSVSKRMMLHVH 209

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233905|ref|XP_972650.2| PREDICTED: similar to CG32791 CG32791-PA [Tribolium castaneum]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 182/231 (78%), Gaps = 26/231 (11%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V GFEPDFLYPLEN+T+ QGRDA FTCVVNNLGG+RV                       
Sbjct: 27  VSGFEPDFLYPLENITVPQGRDATFTCVVNNLGGYRV----------------------- 63

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
              AWIKADTKA+LAIHEHVITNNARLSVTHND NTWTLNIR+V+REDRG YMCQVNT+P
Sbjct: 64  ---AWIKADTKAILAIHEHVITNNARLSVTHNDFNTWTLNIRNVKREDRGQYMCQVNTDP 120

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q AFLEVVIPPDI  EETSGDMMVPEGGSAKLVCKA+GYP P I WRRED   I+ +
Sbjct: 121 MKMQTAFLEVVIPPDIIYEETSGDMMVPEGGSAKLVCKARGYPKPHIVWRREDGGAIVAK 180

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S+   ++++ SVE E+L+LTKVTRSEMGAY CIAANGVPP+VSKR+MLHVH
Sbjct: 181 SSTGRTERLTSVEGEMLTLTKVTRSEMGAYLCIAANGVPPSVSKRMMLHVH 231

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780526|ref|XP_394364.3| PREDICTED: lachesin-like [Apis mellifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 188/232 (81%), Gaps = 9/232 (3%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V G EPDF+YPLEN+TI+QGRDA FTCVV+NLGG+RVS S + +  ++GG+         
Sbjct: 45  VTGLEPDFVYPLENLTISQGRDATFTCVVSNLGGYRVSPSSSVSGDHSGGA--------K 96

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
            +VAWIKADTKAVLAIHEHVITNNARLSVTH+D NTWTLNIR VRREDRG YMCQVNT+P
Sbjct: 97  ARVAWIKADTKAVLAIHEHVITNNARLSVTHSDYNTWTLNIRGVRREDRGIYMCQVNTDP 156

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q AFLEVVIPPDI SEETS D+MVPEGGSAKLVCKA+GYP P I W+RED  EII R
Sbjct: 157 MKSQSAFLEVVIPPDIISEETSNDLMVPEGGSAKLVCKARGYPKPDIVWKREDGAEIISR 216

Query: 184 SNPPSSQ-KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +     + K+ + E E L+L+KVTRSEMG Y CIA+NGVPP+VSKR+MLHVH
Sbjct: 217 AGLSGGKTKLATAEGETLTLSKVTRSEMGTYLCIASNGVPPSVSKRMMLHVH 268

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221500550|ref|NP_001138225.1| CG42343, isoform C [Drosophila melanogaster] gi|221500563|ref|NP_001138226.1| CG42343, isoform F [Drosophila melanogaster] gi|220901842|gb|ACL82954.1| CG42343, isoform C [Drosophila melanogaster] gi|220901843|gb|ACL82955.1| CG42343, isoform F [Drosophila melanogaster]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 180/231 (77%), Gaps = 15/231 (6%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V  FEPDF+ PLENVTIAQGRDA FTCVVNNLGGHRVS           GS      S+ 
Sbjct: 93  VGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGD---------GS------SAP 137

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
            KVAWIKAD KA+LAIHEHVITNN RLSV HND NTWTLNIR V+ ED G YMCQVNT+P
Sbjct: 138 AKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDP 197

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q A LEVVIPPDI +EETSGDMMVPEGGSAKLVC+A+G+P PKITWRRED +EII R
Sbjct: 198 MKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIAR 257

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +      K  SVE E+L+L+K+TRSEMGAY CIA+NGVPPTVSKR+ L VH
Sbjct: 258 NGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVH 308

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008755|ref|XP_002425166.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212508860|gb|EEB12428.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 179/232 (77%), Gaps = 32/232 (13%)

Query: 3   PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
           P  GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGG+RV                      
Sbjct: 49  PTLGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGYRV---------------------- 86

Query: 63  AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
               AWIKADTKA+LAIHEHVITNNARLSVTHND NTWTLNIR VRREDRG YMCQVNT+
Sbjct: 87  ----AWIKADTKAILAIHEHVITNNARLSVTHNDYNTWTLNIRGVRREDRGQYMCQVNTD 142

Query: 123 PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
           PM K      VVIPPDI  EETSGD+MVPEGGSAKLVCKA+G+P PK+ WRRED  +IIV
Sbjct: 143 PMKK------VVIPPDIIYEETSGDLMVPEGGSAKLVCKARGHPKPKVVWRREDGGDIIV 196

Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           R    +  ++ SVE E+L+L+KVTRSEMGAY CIAANGVPP+VSKR+MLHVH
Sbjct: 197 RGGTSAKSRMPSVEGEMLTLSKVTRSEMGAYLCIAANGVPPSVSKRMMLHVH 248

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104327|ref|XP_001648355.1| hypothetical protein AaeL_AAEL004077 [Aedes aegypti] gi|108880339|gb|EAT44564.1| AAEL004077-PA, partial [Aedes aegypti]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/231 (69%), Positives = 175/231 (75%), Gaps = 26/231 (11%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V  FEPDF+YPLENVTIA+GRDA FTCVVNNLGG+RV                       
Sbjct: 1   VAAFEPDFVYPLENVTIAKGRDATFTCVVNNLGGYRV----------------------- 37

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
              AWIKAD KA+LAIHEHVITNN RLSVTHND NTWTL IR+V+ EDRG YMCQVNT+P
Sbjct: 38  ---AWIKADAKAILAIHEHVITNNGRLSVTHNDYNTWTLVIRNVKMEDRGVYMCQVNTDP 94

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           M  Q AFLEVVIPPDI  EETSGDMMVPEGGSAKLVCKA+GYP PKITWRRED +EII R
Sbjct: 95  MKMQTAFLEVVIPPDIVYEETSGDMMVPEGGSAKLVCKARGYPKPKITWRREDGREIIAR 154

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +      K   VE E+LSLTKVTRSEMGAY CIA+NGVPP+VSKR+ L VH
Sbjct: 155 NGTHGKMKATVVEGEMLSLTKVTRSEMGAYMCIASNGVPPSVSKRMKLQVH 205

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.907	0.389	0.705	5.2e-81
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.920	0.582	0.443	6.2e-46
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.693	0.353	0.470	1.2e-45
UNIPROTKB|Q90773	353	Q90773 "Protein CEPU-1" [Gallu	0.668	0.450	0.305	3e-20
UNIPROTKB|Q98892	337	OPCML "Opioid-binding protein/	0.638	0.451	0.321	1.6e-19
UNIPROTKB|Q13449	338	LSAMP "Limbic system-associate	0.647	0.455	0.331	1.8e-19
RGD|71102	338	Lsamp "limbic system-associate	0.647	0.455	0.337	1.8e-19
MGI|MGI:1261760	341	Lsamp "limbic system-associate	0.647	0.451	0.337	1.9e-19
MGI|MGI:2446259	344	Ntm "neurotrimin" [Mus musculu	0.668	0.462	0.288	1.4e-18
UNIPROTKB|Q9P121	344	NTM "Neurotrimin" [Homo sapien	0.668	0.462	0.288	1.8e-18

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 163/231 (70%), Positives = 180/231 (77%)

Query:     4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
             V  FEPDF+ PLENVTIAQGRDA FTCVVNNLGGHRVS           GS      S+ 
Sbjct:    93 VGAFEPDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGD---------GS------SAP 137

Query:    64 MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
              KVAWIKAD KA+LAIHEHVITNN RLSV HND NTWTLNIR V+ ED G YMCQVNT+P
Sbjct:   138 AKVAWIKADAKAILAIHEHVITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDP 197

Query:   124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
             M  Q A LEVVIPPDI +EETSGDMMVPEGGSAKLVC+A+G+P PKITWRRED +EII R
Sbjct:   198 MKMQTATLEVVIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIAR 257

Query:   184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +      K  SVE E+L+L+K+TRSEMGAY CIA+NGVPPTVSKR+ L VH
Sbjct:   258 NGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVH 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 102/230 (44%), Positives = 145/230 (63%)

Query:     9 PDF-LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPT---DSSAM 64
             P F L  L++V  +Q   A F+  +NN    + S  + ++ V  G   +      D  + 
Sbjct:     6 PSFWLLLLQSVCFSQ---ASFS-ELNN-SDPKFSGPINNSTVPVGRDALLTCVVHDLVSF 60

Query:    65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
             KVAW++ DT+ +L+I  HVIT N R+S++H +   W L IR V+  DRG+YMCQ+NT+PM
Sbjct:    61 KVAWLRVDTQTILSIQNHVITKNHRISISHTEHRIWQLKIRDVQESDRGWYMCQINTDPM 120

Query:   125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
               QM +L+VV+PPDI   +TS D++   G +  L C A G P P ITWRRE+   I++  
Sbjct:   121 KSQMGYLDVVVPPDIVDYQTSQDVVRSTGQNVTLTCSATGVPMPTITWRREEATPILISD 180

Query:   185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +    ++VFSVE + L+L +V RS MGAY CIA+NGVPPTVSKR+ML V+
Sbjct:   181 D--GDREVFSVEGQNLTLWQVQRSHMGAYLCIASNGVPPTVSKRVMLVVN 228

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 81/172 (47%), Positives = 116/172 (67%)

Query:    65 KVAWIKADTKAVLAIHEHVITNNARLSVTHN--DAN-TWTLNIRSVRREDRGYYMCQVNT 121
             KVAW+  +  A+L +H HVIT N R+SVTH+  D + TW L+I +V+ EDRG YMCQ+NT
Sbjct:    82 KVAWMHFEQSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINT 141

Query:   122 NPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
                  Q  F++VV+PP+I    TS D++V EG +  L CKAKG P P I W+R+D  +I+
Sbjct:   142 VTAKTQYGFVKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIV 201

Query:   182 VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             +      + +V  +E++ L L +++R  MGAY CIA+NGVPP+VSKR+ + V
Sbjct:   202 INK----TLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSV 249

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q90773 Q90773 "Protein CEPU-1" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
 Identities = 54/177 (30%), Positives = 85/177 (48%)

Query:    60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
             D+   +VAW+  +  ++L         + R+ +  N    +++ I  V   D G Y C V
Sbjct:    58 DNRVTRVAWL--NRSSILYAGNDKWCLDPRVVLLANTKTQYSIQIHDVDVYDEGPYTCSV 115

Query:   120 NTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
              T+  P T ++  + V + P I+  ETS D+ + EGG+  L C A G P P ITWR    
Sbjct:   116 QTDNHPKTSRVHLI-VQVSPKIT--ETSSDISINEGGNVSLTCIATGRPDPTITWRHISP 172

Query:   178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             K +            F  E E L +T +TR + G Y+C A+N V   V +R+ + V+
Sbjct:   173 KAV-----------GFISEDEYLEITGITREQSGEYECSASNDVAAPVVQRVKVTVN 218

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q98892 OPCML "Opioid-binding protein/cell adhesion molecule homolog" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 55/171 (32%), Positives = 78/171 (45%)

Query:    60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
             D    +VAW+   T       +  I N  R+ +  N    +++ I +V   D G Y C V
Sbjct:    53 DDRVRRVAWLNRSTILYAGNDKWSIDN--RVVILSNTKTQYSIKIHNVDVYDEGPYTCSV 110

Query:   120 NTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
              T+  P T ++  + V +PP I +   S D+ V EG S  L+C A G P P +TWR    
Sbjct:   111 QTDNHPKTSRVHLI-VQVPPQIVN--ISSDITVNEGSSVTLMCLAFGRPEPTVTWRHLSG 167

Query:   178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK 227
             K            + F  E E L +T +TR + G Y+C A N V  P V K
Sbjct:   168 KG-----------QGFVSEDEYLEITGITREQSGEYECSAVNDVAVPDVRK 207

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q13449 LSAMP "Limbic system-associated membrane protein" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 57/172 (33%), Positives = 86/172 (50%)

Query:    65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-- 122
             KVAW+   +  + A H+   + + R+ +    +  ++L I+ V   D G Y C V T   
Sbjct:    61 KVAWLNR-SGIIFAGHDKW-SLDPRVELEKRHSLEYSLRIQKVDVYDEGSYTCSVQTQHE 118

Query:   123 PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
             P T Q+ +L V +PP IS+   S D+ V EG +  LVC A G P P ITWR         
Sbjct:   119 PKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWRHLT------ 169

Query:   183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 P+ ++ F  E E L +  +TR + G Y+C AAN V     K++ + V+
Sbjct:   170 ----PTGRE-FEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVN 216

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|71102 Lsamp "limbic system-associated membrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 58/172 (33%), Positives = 85/172 (49%)

Query:    65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-- 122
             KVAW+   +  + A H+   + + R+ +    A  ++L I+ V   D G Y C V T   
Sbjct:    61 KVAWLNR-SGIIFAGHDKW-SLDPRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHE 118

Query:   123 PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
             P T Q+ +L V +PP IS+   S D+ V EG +  LVC A G P P ITWR         
Sbjct:   119 PKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWRHLT------ 169

Query:   183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 P  ++ F  E E L +  +TR + G Y+C AAN V     K++ + V+
Sbjct:   170 ----PLGRE-FEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVN 216

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 58/172 (33%), Positives = 85/172 (49%)

Query:    65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-- 122
             KVAW+   +  + A H+   + + R+ +    A  ++L I+ V   D G Y C V T   
Sbjct:    61 KVAWLNR-SGIIFAGHDKW-SLDPRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHE 118

Query:   123 PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
             P T Q+ +L V +PP IS+   S D+ V EG +  LVC A G P P ITWR         
Sbjct:   119 PKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANGRPEPVITWRHLT------ 169

Query:   183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 P  ++ F  E E L +  +TR + G Y+C AAN V     K++ + V+
Sbjct:   170 ----PLGRE-FEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVN 216

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

MGI|MGI:2446259 Ntm "neurotrimin" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 51/177 (28%), Positives = 82/177 (46%)

Query:    60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
             D+   +VAW+   T  +L         + R+ +  N    +++ I++V   D G Y C V
Sbjct:    60 DNRVTRVAWLNRST--ILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSV 117

Query:   120 NTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
              T+  P T ++  + V + P I   E S D+ + EG +  L C A G P P +TWR    
Sbjct:   118 QTDNHPKTSRVHLI-VQVSPKIV--EISSDISINEGNNISLTCIATGRPEPTVTWRHISP 174

Query:   178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             K +            F  E E L +  +TR + G Y+C A+N V   V +R+ + V+
Sbjct:   175 KAV-----------GFVSEDEYLEIQGITREQSGEYECSASNDVAAPVVRRVKVTVN 220

GO:0005615 "extracellular space" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0031225 "anchored to membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0060076 "excitatory synapse" evidence=ISO

GO:0070492 "oligosaccharide binding" evidence=ISO

UNIPROTKB|Q9P121 NTM "Neurotrimin" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 51/177 (28%), Positives = 82/177 (46%)

Query:    60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
             D+   +VAW+   T  +L         + R+ +  N    +++ I++V   D G Y C V
Sbjct:    60 DNRVTRVAWLNRST--ILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSV 117

Query:   120 NTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
              T+  P T ++  + V + P I   E S D+ + EG +  L C A G P P +TWR    
Sbjct:   118 QTDNHPKTSRVHLI-VQVSPKIV--EISSDISINEGNNISLTCIATGRPEPTVTWRHISP 174

Query:   178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             K +            F  E E L +  +TR + G Y+C A+N V   V +R+ + V+
Sbjct:   175 KAV-----------GFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVKVTVN 220

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008038 "neuron recognition" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-11
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-10
smart00409	85	smart00409, IG, Immunoglobulin	4e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-09
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-08
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-07
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	5e-07
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-06
smart00409	85	smart00409, IG, Immunoglobulin	1e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-06
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	4e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	4e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	5e-05
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	3e-04
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	4e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	7e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	9e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	0.001
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.002
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.002
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.002
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.002
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.002
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.003
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.003
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.004
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
           EG S  L C A+G P P ITW + D K +            F      L++  V+  + G
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLK-DGKPL-------PESNRFVASGSTLTIKSVSLEDSG 52

Query: 212 AYQCIAANGV 221
            Y C+A N  
Sbjct: 53  LYTCVAENSA 62

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 56.5 bits (137), Expect = 9e-11
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
           D+ V EG SA+  C   G P P ++W + D + +       S +   + E    +LT   
Sbjct: 9   DVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPL-----RSSDRFKVTYEGGTYTLTISN 62

Query: 205 VTRSEMGAYQCIAANGV 221
           V   + G Y C+A N  
Sbjct: 63  VQPDDEGKYTCVATNSA 79

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VL 200
              + V EG S  L C+A G P P++TW ++  K +            FSV        L
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR-------FSVSRSGSTSTL 53

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +++ VT  + G Y C A N    + S    L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSS-GSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VL 200
              + V EG S  L C+A G P P++TW ++  K +            FSV        L
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR-------FSVSRSGSTSTL 53

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +++ VT  + G Y C A N    + S    L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSS-GSASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 20/66 (30%), Positives = 28/66 (42%)

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
             L C A G P P ITW +              S +  S  S  L+++ VT  + G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 216 IAANGV 221
           +A+N  
Sbjct: 61  VASNSA 66

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV-ESEVLSLTKVTRSEMG 211
           G +    C+A G P P I W++E ++ ++    PP S   FSV ++  L++T V RS++G
Sbjct: 1   GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 212 AYQCIAAN 219
            Y C   N
Sbjct: 61  YYICQTLN 68

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 147 DMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
           D  V  G  A L C   +G+P P ++WR+ D + + + +       V  V+   L + + 
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLDNER-----VRIVDDGNLLIAEA 58

Query: 206 TRSEMGAYQCIAANGVPPTVSK 227
            +S+ G Y+C+A N V    S 
Sbjct: 59  RKSDEGTYKCVATNMVGERESA 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP I   E   D++V +G  A L CKA+G PTP I W + + + +    + P S ++   
Sbjct: 1   PPRIV--EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLP 57

Query: 196 ESEVLSLTKV----TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
              +  L  V     RS+ G Y C+A N +   VS+   L V
Sbjct: 58  SGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP I + ++  +     G S  L C A G+P P +TW + D + I       S    F+ 
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKYS----FNE 55

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN 219
           +   +++  V + +   Y CIA N
Sbjct: 56  DGSEMTILDVDKLDEAEYTCIAEN 79

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G + +L C+A+G P P ITWR   N   I    P   ++V       L L+ V  ++   
Sbjct: 1   GETGRLDCEAEGIPQPTITWRL--NGVPIEELPPDPRRRVD---GGTLILSNVQPNDTAV 55

Query: 213 YQCIAANG 220
           YQC A+N 
Sbjct: 56  YQCNASNV 63

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G +  L C A G P P+I WR+ D            S    S+   VL +  +   + G 
Sbjct: 16  GQNVTLECFALGNPVPQIKWRKVD--------GSMPSSAEISMSGAVLKIPNIQFEDEGT 67

Query: 213 YQCIAAN 219
           Y+C A N
Sbjct: 68  YECEAEN 74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
           V EG    L C A G P P  TW + D   +       S    F+          V+  +
Sbjct: 11  VFEGEDVTLTCSAPGNPPPNYTWYK-DGVPL-----SSSQNGFFT--------PNVSAED 56

Query: 210 MGAYQCIAANGVPPTVSKRLMLHV 233
            G Y C+A+NG     S  + L V
Sbjct: 57  SGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 46  DTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102
              V  G S+      + S   +V W K   K        ++  + R SV+ +  +T TL
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGK--------LLAESGRFSVSRSG-STSTL 53

Query: 103 NIRSVRREDRGYYMCQV-NTNPMTKQMAFLEV 133
            I +V  ED G Y C   N++        L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 46  DTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL 102
              V  G S+      + S   +V W K   K        ++  + R SV+ +  +T TL
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGK--------LLAESGRFSVSRSG-STSTL 53

Query: 103 NIRSVRREDRGYYMCQV-NTNPMTKQMAFLEV 133
            I +V  ED G Y C   N++        L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
            VP G + +L C A G P P ITW + D K    + +     KV   +   L L  V  S
Sbjct: 5   AVPAGSTVRLKCPASGNPRPTITWLK-DGKP-FKKEHRIGGYKV-RKKKWTLILESVVPS 61

Query: 209 EMGAYQCIAAN 219
           + G Y CI  N
Sbjct: 62  DSGKYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 19/78 (24%)

Query: 152 EGGSAKLVCKAKGYPTPKITWRR------EDNK----EIIVRSNPPSSQKVFSVESEVLS 201
           E     L C+A+G P P+ITWRR      E +K     I+VR +   S          L+
Sbjct: 15  ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSS---------LT 65

Query: 202 LTKVTRSEMGAYQCIAAN 219
           L  V  ++ G Y C A+N
Sbjct: 66  LKDVQLTDAGRYDCEASN 83

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)

Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
           L C A+G PTP+I+W +            P+ +  F   ++ L +  V+  + G Y+C A
Sbjct: 3   LECIAEGLPTPEISWIKIG-------GELPADRTKFENFNKTLKIDNVSEEDDGEYRCTA 55

Query: 218 ANGV 221
           +N +
Sbjct: 56  SNSL 59

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           GG   + CK K  P P I+W +    E++      +S ++       L +  VT+S+ G 
Sbjct: 1   GGDVIIECKPKAAPKPTISWSK--GTELLT-----NSSRICIWPDGSLEILNVTKSDEGK 53

Query: 213 YQCIAAN 219
           Y C A N
Sbjct: 54  YTCFAEN 60

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
            +  C+  G P P + WR+ED +    R+          ++ + L +  VT  + G+Y C
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKGRAE--------ILDDKSLKIRNVTAGDEGSYTC 52

Query: 216 IAANGV 221
            A N V
Sbjct: 53  EAENMV 58

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G S +  CKA G P P   W +           P +S+    VE+  L +TK++ S+ G 
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKN--------GQPLASENRIEVEAGDLRITKLSLSDSGM 65

Query: 213 YQCIAAN 219
           YQC+A N
Sbjct: 66  YQCVAEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
           +  P G S +L C A G P P ITW + DNK +       S +K ++     LSL  +  
Sbjct: 4   IARPVGSSVRLKCVASGNPRPDITWLK-DNKPLTPTEIGESRKKKWT-----LSLKNLKP 57

Query: 208 SEMGAYQCIAANGV 221
            + G Y C  +N  
Sbjct: 58  EDSGKYTCHVSNRA 71

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAY 213
           A+L C A G+PTP+I W+++   +      P + ++   V  E +V  +  V   + G Y
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDF-----PAARERRMHVMPEDDVFFIVDVKIEDTGVY 55

Query: 214 QCIAAN 219
            C A N
Sbjct: 56  SCTAQN 61

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 37/127 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F    ++V + +G  A FTC V                  TG     P       V+W
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTV------------------TG----DPD----PTVSW 34

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K             + ++ R  VT+      TL I +V+ +D G Y C   TN   +  
Sbjct: 35  FKDGQP---------LRSSDRFKVTYEGGTY-TLTISNVQPDDEGKYTCVA-TNSAGEAE 83

Query: 129 AFLEVVI 135
           A  E+ +
Sbjct: 84  ASAELTV 90

Length = 90

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
           L C A+GYP P I W+    +     ++    + ++  + +  L +  V   + G Y C 
Sbjct: 3   LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCK 62

Query: 217 AANGVPPTVSKRLMLHV 233
            +N V    SK ++L V
Sbjct: 63  VSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
           L C A+G PTP++ W R D          P+  K  +  ++ L L  V  S+ G Y C A
Sbjct: 3   LECIAEGLPTPEVHWDRIDG------PLSPNRTKKLN-NNKTLQLDNVLESDDGEYVCTA 55

Query: 218 ANG 220
            N 
Sbjct: 56  ENS 58

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE----SEVLSLTKVTR 207
           E G+A L CKA+G P P+ITW+R  +       +     ++  V+       L +  V  
Sbjct: 15  ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRI-EVKGQHGESSLHIKDVKL 73

Query: 208 SEMGAYQCIAAN 219
           S+ G Y C AA+
Sbjct: 74  SDSGRYDCEAAS 85

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G  A L CKA+G P P I W   D K I       +S +    ++  L +   T  + G+
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLI------SNSSRTLVYDNGTLDILITTVKDTGS 54

Query: 213 YQCIAAN 219
           + CIA+N
Sbjct: 55  FTCIASN 61

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
           EG +   +C+A+GYP P I W +  ++  + R +      V S  S  L +++V   + G
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRH-----LVLS--SGTLRISRVALHDQG 53

Query: 212 AYQCIAANGVPPTVSKRLMLHV 233
            Y+C A N      S+R +  +
Sbjct: 54  QYECQAVN---IVGSQRTVAQL 72

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 40  VSSSVTDTHVNTGGSIVFP----TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT-- 93
           V+       V  GGS+  P    + S +  V W K        +  H +T+     V   
Sbjct: 4   VTQPPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPR 63

Query: 94  ---------HNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
                    +   N ++L I ++R  D G Y C V+    
Sbjct: 64  FKGRVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNE 103

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G S  L C   G P   +TW +E         +         V S  L+++ VT  + G 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLE---ESTTVGTDENRVSSITLTISNVTPEDSGT 57

Query: 213 YQCIA 217
           Y C+ 
Sbjct: 58  YTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFS 194
            P I+   +     V  GG   L C A+G P  P I+W R         S    S  + S
Sbjct: 1   KPVITVSPSP---SVTSGGGVTLTCSAEGGPPPPTISWYRNG-------SISGGSGGLGS 50

Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN 219
             S  L+L+ VT  + G Y C+A+N
Sbjct: 51  SGS-TLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM-GAYQCIAA 218
           C+AKG P P   W R + K   V  +P  S +  S    +         +  G YQC A 
Sbjct: 5   CEAKGNPVPTFQWTR-NGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFAR 63

Query: 219 NGVPPTVSKRLML 231
           N +   +S +++L
Sbjct: 64  NNLGTALSNKILL 76

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
           C+  G PTP + W +  N ++++   P    K+  V+   L +  + +S+ G YQCIA N
Sbjct: 6   CEVTGKPTPTVKWVK--NGDMVI---PSDYFKI--VKEHNLQVLGLVKSDEGFYQCIAEN 58

Query: 220 GV 221
            V
Sbjct: 59  DV 60

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 97  ANTWTLNIRSVRREDRGYYMCQVNTNPM 124
           A+  TL I+SV  ED G Y C    N  
Sbjct: 36  ASGSTLTIKSVSLEDSGLYTCVA-ENSA 62

Length = 63

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 11/36 (30%), Positives = 13/36 (36%)

Query: 84  ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
                R+         WTL + SV   D G Y C V
Sbjct: 35  FKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G    L+C+A G P P I+W   +   I +    PS +    V+ + +  +KV       
Sbjct: 1   GEDGTLICRANGNPKPSISW-LTNGVPIEIAPTDPSRK----VDGDTIIFSKVQERSSAV 55

Query: 213 YQCIAAN 219
           YQC A+N
Sbjct: 56  YQCNASN 62

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           GG   + CK K  P PK +W +    E++V     ++ ++   +   L +  +T+ + G+
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSK--GTELLV-----NNSRISIWDDGSLEILNITKLDEGS 53

Query: 213 YQCIAAN 219
           Y C A N
Sbjct: 54  YTCFAEN 60

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
           G +A+L C+ +G PTP ITW    N   I  ++P   +    V S  L LT V  S+   
Sbjct: 1   GETARLDCQVEGIPTPNITWSI--NGAPIEGTDPDPRRH---VSSGALILTDVQPSDTAV 55

Query: 213 YQCIAAN 219
           YQC A N
Sbjct: 56  YQCEARN 62

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
           A L C A+G P P++TW +     + +         + +  SE L ++ V   + GAY C
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNG---MDITPKLSKQLTLIANGSE-LHISNVRYEDTGAYTC 56

Query: 216 IAAN 219
           IA N
Sbjct: 57  IAKN 60

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
           A ++C A G P P+ITW ++      +  +  S+ ++  + S  L +     S+ G Y+C
Sbjct: 1   ATMLCAASGNPDPEITWFKD-----FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYEC 55

Query: 216 IAANGVPPTVSKRLMLHV 233
           +A N      S    L+V
Sbjct: 56  VATNSAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRR------EDNKEIIVRSNPPSSQKVFSVESEVL 200
           D++   GG   L C A+G P PKI W++        + E   +  P  S  + SV     
Sbjct: 8   DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE-RRQQLPNGSLLITSVVH--- 63

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKR 228
             +K  + + G YQC+A N    ++  R
Sbjct: 64  --SKHNKPDEGFYQCVAQNDSLGSIVSR 89

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
           P I+S  + G+    +     L C+A+G  T  I W       +   S     +   S +
Sbjct: 2   PVINSNNSVGNQPPEDNQPVTLTCEAEGQAT-YIWW-------VNNGSLLVPPRLQLSND 53

Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +  L+   VTRS+ G YQC A+N V    S   +L+V
Sbjct: 54  NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG3513|consensus	1051		99.93
KOG3513|consensus	1051		99.93
KOG4194|consensus	873		99.89
PHA02826	227	IL-1 receptor-like protein; Provisional	99.88
KOG4194|consensus	873		99.88
KOG4221|consensus	1381		99.87
PHA02785	326	IL-beta-binding protein; Provisional	99.86
KOG4221|consensus	1381		99.83
PHA02785	326	IL-beta-binding protein; Provisional	99.79
KOG4222|consensus	1281		99.75
KOG4222|consensus	1281		99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.65
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.64
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.62
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.61
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.61
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.61
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.6
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.6
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.59
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.58
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.58
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.58
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.58
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.58
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.58
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.57
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.57
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.57
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.57
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.56
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.56
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.56
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.56
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.56
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.56
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.56
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.55
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.55
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.55
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.55
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.55
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.54
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.54
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.53
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.53
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.53
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.53
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.53
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.52
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.52
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.51
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.51
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.51
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.51
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.51
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.51
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.5
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.5
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.5
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.5
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.5
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.49
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.49
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.49
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.49
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.49
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.49
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.49
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.49
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.48
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.48
PHA03376	221	BARF1; Provisional	99.48
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.48
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.48
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.47
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.47
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.47
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.47
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.46
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.46
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.45
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.45
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.45
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.44
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.44
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.44
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.44
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.44
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.44
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.44
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.44
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.43
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.43
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.42
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.42
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.41
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.41
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.41
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.41
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.41
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.4
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.4
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.39
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.39
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.38
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.37
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.37
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.37
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.37
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.36
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.35
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.35
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.35
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.35
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.35
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.34
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.34
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.33
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.33
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.33
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.32
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.32
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.32
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.32
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.32
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.32
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.31
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.29
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.29
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.29
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.29
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.28
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.28
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.28
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.28
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.28
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.27
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.27
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.25
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.25
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.24
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.24
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.24
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.24
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.24
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.23
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.22
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.22
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.22
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.22
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.21
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.21
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.21
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.21
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.2
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.19
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.19
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.17
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.16
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.15
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.15
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.15
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.14
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.14
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.14
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.13
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.13
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.13
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.12
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.12
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.12
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.12
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.11
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.11
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.11
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.11
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.1
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.09
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.09
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.09
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.07
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.06
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
PHA02826	227	IL-1 receptor-like protein; Provisional	99.04
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	99.04
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.03
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.03
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	99.02
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	99.01
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.01
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.01
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.0
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.99
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.99
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.99
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.98
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.98
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.98
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.97
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.97
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.97
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.97
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.97
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.97
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.96
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.96
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.96
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.96
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.95
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.95
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
smart00409	86	IG Immunoglobulin.	98.95
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.95
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.94
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.93
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.93
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.92
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.92
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.91
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.91
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.91
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.91
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.91
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.9
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.87
KOG3515|consensus	741		98.87
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.87
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.85
smart00409	86	IG Immunoglobulin.	98.85
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.85
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.83
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.82
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.8
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.8
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.78
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.78
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.78
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.76
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.74
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.73
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.73
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.71
smart00406	81	IGv Immunoglobulin V-Type.	98.7
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.69
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.69
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.68
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.67
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.66
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.65
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.63
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.62
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.62
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.61
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.58
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.57
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.56
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.55
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.55
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.52
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.5
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.48
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.47
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.46
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.46
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.44
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	98.44
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.4
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.4
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.39
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.38
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.38
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.38
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.34
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.34
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.33
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.32
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.31
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.3
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.3
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.29
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.26
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.26
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.24
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.23
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.22
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.22
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.2
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.16
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.12
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.11
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.08
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.07
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.07
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.06
KOG1480|consensus	909		98.02
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.01
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.01
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.01
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.01
KOG3515|consensus	741		97.97
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.93
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.93
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.91
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.9
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.88
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.88
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.86
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.86
smart00407	75	IGc1 Immunoglobulin C-Type.	97.86
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.82
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.82
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.81
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.81
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.8
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.77
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.76
smart00407	75	IGc1 Immunoglobulin C-Type.	97.75
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.74
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.73
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.7
PHA03271	490	envelope glycoprotein C; Provisional	97.7
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.69
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.69
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.69
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.68
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.67
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.65
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.63
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.63
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.61
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.6
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.56
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.54
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.52
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.51
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.48
smart00406	81	IGv Immunoglobulin V-Type.	97.47
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.44
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.44
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.43
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.42
PHA03270	466	envelope glycoprotein C; Provisional	97.32
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.29
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.22
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.21
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.17
PHA02633	63	hypothetical protein; Provisional	97.13
PHA03271	490	envelope glycoprotein C; Provisional	97.13
PHA03376	221	BARF1; Provisional	97.11
PHA03269	566	envelope glycoprotein C; Provisional	97.08
PHA02633	63	hypothetical protein; Provisional	97.01
PHA03269	566	envelope glycoprotein C; Provisional	96.87
PHA02982	251	hypothetical protein; Provisional	96.81
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.73
KOG4597|consensus	560		96.71
PHA03273	486	envelope glycoprotein C; Provisional	96.67
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.62
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.48
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.42
PHA03270	466	envelope glycoprotein C; Provisional	96.41
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.36
PHA02982	251	hypothetical protein; Provisional	96.31
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.94
PHA03042	286	CD47-like protein; Provisional	95.59
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.08
PHA03189	348	UL14 tegument protein; Provisional	95.02
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.96
KOG1480|consensus	909		94.72
PHA03273	486	envelope glycoprotein C; Provisional	94.65
PHA03042	286	CD47-like protein; Provisional	94.59
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.04
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.77
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.54
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	92.87
PHA02865	338	MHC-like TNF binding protein; Provisional	91.45
KOG4597|consensus	560		90.44
PHA02865	338	MHC-like TNF binding protein; Provisional	90.16
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.81
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	88.23
PHA03052	69	Hypothetical protein; Provisional	86.33
KOG0613|consensus	1205		82.81
PHA03052	69	Hypothetical protein; Provisional	82.27
PHA03240	258	envelope glycoprotein M; Provisional	80.8

>KOG3513|consensus

Probab=99.93  E-value=1.1e-24  Score=181.06  Aligned_cols=187  Identities=24%  Similarity=0.413  Sum_probs=151.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ...|.++..+++..+..|+++.+.|.+.                          +.|.|.+.|++++..+....      
T Consensus       329 ~a~P~w~~~~~d~~~~~gs~v~~eC~a~--------------------------g~P~p~v~WlkNg~pl~~~~------  376 (1051)
T KOG3513|consen  329 YAPPYWLQKPQDTEADTGSNVTLECKAS--------------------------GKPNPTVKWLKNGEPLEPAE------  376 (1051)
T ss_pred             ecCchhhcccceeEecCCCCeEEEEEec--------------------------CCCCCceEEeeCCeecCccC------
Confidence            3579999999999999999999999995                          46688899999887654211      


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC-CcccccccCCceeecCCCcEEEEEEEc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP-PDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                      .+.+..+...     +|+|.+++.+|+|.|.|.++|. +.....+.|.|... |.+...+......+..|..+.|.|...
T Consensus       377 r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~  451 (1051)
T KOG3513|consen  377 RDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPF  451 (1051)
T ss_pred             CCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccC
Confidence            1233555444     9999999999999999999886 55677889999854 777666666666788899999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +.|.|.+.|.++++ .+.      ...+.....+++|.|.+++.+|+|.|+|.|+|..|.+ ..+..|.|..++
T Consensus       452 asP~p~~~W~k~~~-~~~------~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~t  517 (1051)
T KOG3513|consen  452 ASPKPKVSWLKGGE-KLL------QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDAT  517 (1051)
T ss_pred             CCCcceEEEEcCCc-ccc------cCceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCc
Confidence            99999999999554 322      1244556678899999999999999999999999955 888888887654

>KOG3513|consensus

Probab=99.93  E-value=9.4e-24  Score=175.48  Aligned_cols=184  Identities=25%  Similarity=0.461  Sum_probs=143.7

Q ss_pred             ccccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           6 GFEPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         6 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ..+|.|... ++...+..|+++.|.|.+                          .|+|.|++.|.|.++....       
T Consensus       238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA--------------------------~G~P~P~i~W~k~~g~~~~-------  284 (1051)
T KOG3513|consen  238 EYAPKILVPFPETETALKGQSVKLECFA--------------------------LGNPTPQIKWRKVDGKPPP-------  284 (1051)
T ss_pred             ccCCccccCCCCcccccCCCeEEEEEEe--------------------------cCCCCCcEEEEeCCCCCCC-------
Confidence            346777643 557889999999999998                          4678999999999885321       


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                         .|......  + -+|.|.+++.+|+|.|.|.++|. +.......+.|..+|.+..  ...+..+..|+++.|.|.+.
T Consensus       285 ---~r~~~~~~--~-~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~--~~~d~~~~~gs~v~~eC~a~  356 (1051)
T KOG3513|consen  285 ---RRATYSNY--G-KVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQ--KPQDTEADTGSNVTLECKAS  356 (1051)
T ss_pred             ---cceeeecc--c-cEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhc--ccceeEecCCCCeEEEEEec
Confidence               12211111  1 19999999999999999999886 5556677788888888865  45667788999999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |.|.|.++|++ ++.++....    .........+.|.|.+++..|+|.|.|.|+|.+| ...+.+.|.|...
T Consensus       357 g~P~p~v~Wlk-Ng~pl~~~~----r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  357 GKPNPTVKWLK-NGEPLEPAE----RDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG-TIYANAELKVLAS  423 (1051)
T ss_pred             CCCCCceEEee-CCeecCccC----CCcceEEeCCEEEEEecccccCeEEEeeeecccc-eEeeeeEEEEEcc
Confidence            99999999999 666665322    1122345667899999999999999999999999 5588888988864

>KOG4194|consensus

Probab=99.89  E-value=1.2e-22  Score=158.94  Aligned_cols=206  Identities=25%  Similarity=0.367  Sum_probs=149.3

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.....+|++...|+.+.+..|..+.|+|.+.....                        .+..+.|.+++........+
T Consensus       497 vC~DspkpqI~~qPe~~~al~g~nirftC~a~sssa------------------------splsi~WR~dnevq~rv~ve  552 (873)
T KOG4194|consen  497 VCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSA------------------------SPLSIEWRKDNEVQPRVDVE  552 (873)
T ss_pred             eecCCCCcceecCchHhhhhhccceEEEEEeccCCC------------------------CCceeEeeeccccCcccchh
Confidence            445567899999999999999999999999975322                        25579999976532211111


Q ss_pred             eE--eecCccEEE-EEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941          82 HV--ITNNARLSV-THNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        82 ~~--~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~  156 (238)
                      ..  +....|-.. .........|.+.|++..|.|.|.|++.|.-  .-+.++.+.|...|.+..  .+.++.+..|..+
T Consensus       553 d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk--tP~dltl~tg~mA  630 (873)
T KOG4194|consen  553 DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK--TPEDLTLRTGQMA  630 (873)
T ss_pred             cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCcccc--Ccccceeecccce
Confidence            00  000000000 0011123479999999999999999998853  335577788888887764  4667889999999


Q ss_pred             EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      .|.|.+.|.|.|+|.|-++++..++.-..   ........+..+.|.++..+|.|.|+|.|.|.+| ..+...+|.|...
T Consensus       631 rl~CaAtG~P~PeIawqkdggtdFPAA~e---RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V~e~  706 (873)
T KOG4194|consen  631 RLECAATGHPRPEIAWQKDGGTDFPAARE---RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAG-QISANATLTVLET  706 (873)
T ss_pred             eeeeeccCCCCcceeehhcCCCCCchhhh---heeeecCCCCEEEEecccccccceeEEeeecccc-ceeeceEEEEecC
Confidence            99999999999999999977765544321   1222344556889999999999999999999999 5588999999887


Q ss_pred             c
Q psy7941         237 Y  237 (238)
Q Consensus       237 p  237 (238)
                      |
T Consensus       707 p  707 (873)
T KOG4194|consen  707 P  707 (873)
T ss_pred             C
Confidence            6

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.88  E-value=5.4e-21  Score=138.27  Aligned_cols=190  Identities=16%  Similarity=0.273  Sum_probs=112.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ....+.+.+|+++.|.|.+.+.....+..               ......+.+.|+|.+......... .......+...
T Consensus        28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~---------------~~~~~~~~V~W~k~~s~~~v~~~~-~~~~~~~i~~~   91 (227)
T PHA02826         28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFD---------------KTFITSYNVTWSKTDSLAFVRDSG-ARTKIKKITHN   91 (227)
T ss_pred             CcceEEecCCCCEEEEccccccccccccc---------------cccCCCccEEEEeCCeEEEEEcCC-Ccccccccccc
Confidence            45678899999999999986421100000               000224579999976432211100 00000000000


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-----cccC
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-----GYPT  167 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~  167 (238)
                      .......+|.|.+++.+|+|.|+|.+.+... ......|.|..+        .....+.+|+.+.|.|.+.     +.|.
T Consensus        92 ~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------~~~~~~~~G~~v~L~C~~~~~~~~~~p~  163 (227)
T PHA02826         92 EIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG--------TINYQFNSGKDSKLHCYGTDGISSTFKD  163 (227)
T ss_pred             ceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC--------CccceEecCCCEEEEeeCCCCccccCCC
Confidence            0011133899999999999999999987542 233334444321        1224567899999999975     3467


Q ss_pred             CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CC--CccceEEEEE
Q psy7941         168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PP--TVSKRLMLHV  233 (238)
Q Consensus       168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~--~~~~~~~l~V  233 (238)
                      |+++|++ ++..+....     .......++.|.|.++..+|+|.|+|.|.... |.  ..++.+.|+|
T Consensus       164 p~I~WyK-ng~~l~~~~-----r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~  226 (227)
T PHA02826        164 YTLTWYK-NGNIVLYTD-----RIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI  226 (227)
T ss_pred             ceEEEEE-CCEECCCCC-----CEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence            8999999 555543211     11122234579999999999999999999865 32  3355555543

>KOG4194|consensus

Probab=99.88  E-value=4.6e-21  Score=150.24  Aligned_cols=199  Identities=25%  Similarity=0.356  Sum_probs=144.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCe-----------------EEeccCCCCceEEEEeCCceeeeeee
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGS-----------------IVFPTDSSAMKVAWIKADTKAVLAIH   80 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~W~~~~~~~~~~~~   80 (238)
                      ..|.-++.+.|+|.++|.-|..++..+..++...+++                 .+-+.|.|.|+|.|.|+++...+...
T Consensus       579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~  658 (873)
T KOG4194|consen  579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAAR  658 (873)
T ss_pred             eeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhh
Confidence            3577899999999999999998888777776443333                 33447789999999998876433221


Q ss_pred             eeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941          81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                            ..|..+...+   -.+.|.|++.+|+|.|+|.+++. +..+..+.+.|...|.+..+  ..+..+..|+.+.|+
T Consensus       659 ------eRRl~Vmped---d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~get~vlq  727 (873)
T KOG4194|consen  659 ------ERRLHVMPED---DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGETLVLQ  727 (873)
T ss_pred             ------hheeeecCCC---CEEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecceEEEE
Confidence                  1233222221   27889999999999999999875 66778889999988887765  344667889999999


Q ss_pred             EEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         160 CKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       160 C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.+.+.|. |.+.|+++++........      .....+--|.+.+...+|+|.|+|...|..|.. ...+.+.|.
T Consensus       728 C~a~~~~a~pr~~W~k~d~pil~t~rh------~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~-~~~i~l~~~  796 (873)
T KOG4194|consen  728 CLAEGAPADPRLEWFKEDKPILITERH------TFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE-RIHICLLVY  796 (873)
T ss_pred             EecCCCCCCccccccCCCCceEEeecc------cCCCCCeEEEEEehhhhhcceEEEEEEeeccce-eeEEEEEEe
Confidence            99999877 899999966655443321      111223356677788899999999999999843 455555444

>KOG4221|consensus

Probab=99.87  E-value=1.4e-20  Score=156.95  Aligned_cols=184  Identities=27%  Similarity=0.474  Sum_probs=140.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .+.|...+.+..+..|+++.|.|.+..                          .|.+.+.|.+++..+..         +
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~--------------------------e~~p~i~w~kn~~pl~~---------~  184 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNA--------------------------EPVPTIMWLKNDQPLPL---------D  184 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcC--------------------------ccCceeEEecccccccC---------C
Confidence            577888888999999999999998853                          23457999998775432         3


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCc----ccccccCCceeecCCCcEEEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPD----ISSEETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~----~~~~~~~~~~~~~~g~~~~l~C~  161 (238)
                      +|+...-++    .|.|.+++..|.|.|.|.++++.  ..+..+.|+|...+.    ..+...+....+.+|+.+.|.|.
T Consensus       185 ~r~i~lpsG----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCv  260 (1381)
T KOG4221|consen  185 SRVIVLPSG----ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECV  260 (1381)
T ss_pred             CcEEEcCCC----cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEE
Confidence            355444433    89999999999999999998753  346677888874332    22344566677899999999999


Q ss_pred             EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +.+.|.|.|.|.+ ++..+....     ..+.....+.|.|++++..|+|.|+|.|.|... ...+...|.|..+|
T Consensus       261 vs~~p~p~v~Wlr-ng~~i~~ds-----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D-~idasaev~V~a~P  329 (1381)
T KOG4221|consen  261 VSGVPKPSVKWLR-NGEKISVDS-----YRIVLVGGSSLLISNATDDDSGKYTCRATNTND-SIDASAEVTVLAPP  329 (1381)
T ss_pred             ecCCCCCceEEee-CCeeeeecc-----eEEEEecccceEEeccccccCceEEEEecCCCc-ccccceEEEEEcCC
Confidence            9999999999999 666665422     344455567899999999999999999999554 33666777887766

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.86  E-value=1.6e-19  Score=138.53  Aligned_cols=187  Identities=17%  Similarity=0.250  Sum_probs=116.6

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeee----------------eecCCeEEecc--------CCCCceEEEEeCCce
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTGGSIVFPT--------DSSAMKVAWIKADTK   74 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~~~W~~~~~~   74 (238)
                      .+...|++.|.|.++|..+.. ..++.+++                ...|....+.|        +.|++.++|+++.. 
T Consensus        88 ~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-  165 (326)
T PHA02785         88 NPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-  165 (326)
T ss_pred             ccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-
Confidence            356689999999999876432 12221111                22344455555        36788999988532 


Q ss_pred             eeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cc----eeeEEEEEcCCcccccccCCcee
Q psy7941          75 AVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TK----QMAFLEVVIPPDISSEETSGDMM  149 (238)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~----~~~~l~v~~~~~~~~~~~~~~~~  149 (238)
                      +          ...++.....    ..|.|.+++.+|+|.|+|.+.+... ..    ..+.+.|..+...+....+....
T Consensus       166 ~----------~~~r~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~  231 (326)
T PHA02785        166 L----------RNKRLKQRTP----GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVV  231 (326)
T ss_pred             c----------CCcceEecCC----CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEE
Confidence            1          1233333211    2899999999999999999977422 21    12234444222111112235567


Q ss_pred             ecCCCcEEEEEEEccccC---CeEEEEeCCCeeeEeecCCCCCcce-----------EEEeeceEEEEEeecCCCeEEEE
Q psy7941         150 VPEGGSAKLVCKAKGYPT---PKITWRREDNKEIIVRSNPPSSQKV-----------FSVESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      +..|+.+.|.|.+.|.|.   +.+.|++ ++..+...+.. .....           .......|.|.++..+|.|.|+|
T Consensus       232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C  309 (326)
T PHA02785        232 TSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYEEDDED-GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTC  309 (326)
T ss_pred             ecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECCCcCCC-CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEE
Confidence            788999999999998776   4899999 55544321100 00000           01123479999999999999999


Q ss_pred             EeeeCCCC
Q psy7941         216 IAANGVPP  223 (238)
Q Consensus       216 ~~~n~~g~  223 (238)
                      .|.|..|.
T Consensus       310 ~A~n~~~~  317 (326)
T PHA02785        310 MAFTIPSI  317 (326)
T ss_pred             EEEeccCc
Confidence            99998863

>KOG4221|consensus

Probab=99.83  E-value=7.3e-20  Score=152.76  Aligned_cols=176  Identities=23%  Similarity=0.463  Sum_probs=133.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .|...+....+..||++.|.|.++                          +.|.|++.|++++.++...        +.|
T Consensus       239 ~fl~~p~~~~v~~g~~v~leCvvs--------------------------~~p~p~v~Wlrng~~i~~d--------s~r  284 (1381)
T KOG4221|consen  239 VFLDEPSNAVVVEGDDVVLECVVS--------------------------GVPKPSVKWLRNGEKISVD--------SYR  284 (1381)
T ss_pred             eeecCCCccccccCCcEEEEEEec--------------------------CCCCCceEEeeCCeeeeec--------ceE
Confidence            477888899999999999999995                          4567889999977765432        234


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      +.+....    +|.|.+++..|+|.|+|++.|. ......+.++|..+|.+..  .+..+...++.++.|.|.+.|.|.|
T Consensus       285 ivl~g~~----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~--~p~~l~A~e~~die~ec~~~g~p~p  358 (1381)
T KOG4221|consen  285 IVLVGGS----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK--APTTLVAHESMDIEFECPVSGKPIP  358 (1381)
T ss_pred             EEEeccc----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC--CCcceeeeeccceeEeCCCCCCCcc
Confidence            4433222    8999999999999999999773 4456678899999887764  3455677779999999999999999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+.|++ ++..+...      .......+..|.|..+-..|.|.|.|.++|..|.. .....+.|
T Consensus       359 ~v~w~k-Ngd~~ips------dy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a-~a~a~l~v  415 (1381)
T KOG4221|consen  359 TVRWYK-NGDRIIPS------DYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSA-QAAAQLEV  415 (1381)
T ss_pred             eEEEEe-cCcccCcc------cceEecCCCCcEEEEEecccchhhhhhhccCcccc-cchhhhee
Confidence            999999 55544332      22333344448888899999999999999999954 55444433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.79  E-value=1.4e-17  Score=127.92  Aligned_cols=173  Identities=16%  Similarity=0.322  Sum_probs=110.1

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ...+.+|+.+.|.|.+.+.                     +..+.|.+.+.|+|++.....           .... .. 
T Consensus        35 ~~~~~~ge~~~l~C~~~~~---------------------~~~g~p~~~i~W~K~g~~~~~-----------~~~~-~~-   80 (326)
T PHA02785         35 SFMELENEPVILPCPQINT---------------------LSSGYNILDILWEKRGADNDR-----------IIPI-DN-   80 (326)
T ss_pred             hhhhhcCCCEEEECCCccc---------------------cccCCCCceEEEEECCCccce-----------EEEc-cC-
Confidence            4456789999999987431                     013455778999998643110           0000 01 


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE-----EccccCCeE
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK-----AKGYPTPKI  170 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~  170 (238)
                       +. .|.|.++..+|+|.|+|.+.|... ....+.|+|................+.+|..+.|.|.     ..+.|.+.+
T Consensus        81 -g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i  158 (326)
T PHA02785         81 -GS-NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADI  158 (326)
T ss_pred             -Cc-eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceE
Confidence             11 577899999999999999987643 3445566665432211111122234668899999997     235688899


Q ss_pred             EEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC---ccceEEEEEE
Q psy7941         171 TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT---VSKRLMLHVH  234 (238)
Q Consensus       171 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~---~~~~~~l~V~  234 (238)
                      +|++ +.. +.       ........++.|.|.++..+|.|.|+|.+.|..|..   .++.+.|.|.
T Consensus       159 ~W~k-~~~-~~-------~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~  216 (326)
T PHA02785        159 IWSG-HRR-LR-------NKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR  216 (326)
T ss_pred             EEcc-CCc-cC-------CcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence            9987 332 11       012222234689999999999999999999988743   1334455554

>KOG4222|consensus

Probab=99.75  E-value=1.4e-17  Score=138.56  Aligned_cols=193  Identities=23%  Similarity=0.376  Sum_probs=144.2

Q ss_pred             CCEEEEeEEecCCCceeeeeeee---------------eeeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeEe
Q psy7941          24 RDAIFTCVVNNLGGHRVSSSVTD---------------THVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus        24 ~~~~l~C~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      +-+.|.|.++|..+...+....+               +....|+...+.|+    .|.+.+.|.|++..+....     
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~-----  177 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD-----  177 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc-----
Confidence            77799999999877766653322               23567888888877    5688999999887765211     


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  162 (238)
                        ..++.+.+-+    .|.|.|+...|.|.|.|+++|.  ...+..+.+.|+..|.+...  +....+..|..+.+.|.+
T Consensus       178 --~~~~~lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r--p~~~~v~~g~~~~f~c~v  249 (1281)
T KOG4222|consen  178 --VPIIALISGG----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR--PKDLAVLVGAAAEFDCRV  249 (1281)
T ss_pred             --ceeEEEecCC----cEEEeccccCCCceeeeeecccccccccccceeeeccCCccccc--cccceeeccccccccccc
Confidence              1222222222    8999999999999999999874  33455678888888877643  555778889999999999


Q ss_pred             ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.|.|.+.|.+++. .+...      .........+|.|.++...|.|.|.|.+.|..| ...++..++|+.+|
T Consensus       250 ~GdP~P~Vrwkk~~~-~~P~~------ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV~apP  316 (1281)
T KOG4222|consen  250 GGDPQPTVRWKKDDP-SLPRS------RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVG-GLEASATLTVQAPP  316 (1281)
T ss_pred             CCCCCCceeeeccCC-CCCcc------ceeeeeccccccccccCCCcccceeeecccccc-ccccccceEEecCc
Confidence            999999999999443 33211      222334446799999999999999999999999 55888888998876

>KOG4222|consensus

Probab=99.70  E-value=3.4e-16  Score=130.58  Aligned_cols=186  Identities=25%  Similarity=0.459  Sum_probs=142.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+....+..|+++.+.|.+.                          ++|.+++.|.+.+....          
T Consensus       224 e~P~f~~rp~~~~v~~g~~~~f~c~v~--------------------------GdP~P~Vrwkk~~~~~P----------  267 (1281)
T KOG4222|consen  224 EKPWFWKRPKDLAVLVGAAAEFDCRVG--------------------------GDPQPTVRWKKDDPSLP----------  267 (1281)
T ss_pred             cCCccccccccceeecccccccccccC--------------------------CCCCCceeeeccCCCCC----------
Confidence            578999999999999999999999984                          56788899999665532          


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ..|+.+.....   +|.|.+++..|.|.|.|.+.+. +.....+.++|+.+|.+...  +....+..|..+.|.|.+.|.
T Consensus       268 ~~ry~i~~d~q---tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk--p~dq~v~lg~~vt~pc~~~gn  342 (1281)
T KOG4222|consen  268 RSRYSILDDTQ---TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK--PRDQKVALGGTVTFPCETLGN  342 (1281)
T ss_pred             ccceeeeeccc---cccccccCCCcccceeeeccccccccccccceEEecCcccccc--cCccccccCceEEeeeecCCC
Confidence            44555443311   8999999999999999999875 56677889999999988754  344567779999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         166 PTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      |.|.+.|.+++...+..... .....+........|+|.++...|.|.|.|...+..|....+.....+
T Consensus       343 P~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  343 PPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             CCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence            99999999977665544322 111222223334489999999999999999998888866555554433

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=8.1e-16  Score=97.21  Aligned_cols=88  Identities=24%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.+.+.|++ ++..+....   ..........+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~---~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~   82 (98)
T cd05762           7 PEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE---GIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR   82 (98)
T ss_pred             CcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC---cEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce
Confidence            455778999999999999999999999999 555553211   0011111234579999999999999999999999955


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                       ..++.|.|..+|
T Consensus        83 -~~~~~l~V~~~P   94 (98)
T cd05762          83 -QAQVNLTVVDKP   94 (98)
T ss_pred             -eEEEEEEEecCC
Confidence             889999998876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.65  E-value=6.2e-15  Score=93.17  Aligned_cols=94  Identities=20%  Similarity=0.388  Sum_probs=71.8

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.|...++.+.+..|+++.|.|.+.                          +.|++.+.|+|++..+.         .+.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~--------------------------G~p~p~v~W~kdg~~l~---------~~~   45 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVT--------------------------GTQPITCTWMKFRKQIQ---------EGE   45 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEc--------------------------ccCCCceEEEECCEEec---------CCC
Confidence            6788899999999999999999995                          45678899999876542         123


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD  138 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~  138 (238)
                      ++.+.... ....|.|.++..+|+|.|+|.+.|. +.....+.|.|...|.
T Consensus        46 ~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          46 GIKIENTE-NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             cEEEEecC-CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCC
Confidence            34433222 2338999999999999999999886 4456677788876664

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.64  E-value=2.1e-15  Score=93.53  Aligned_cols=81  Identities=25%  Similarity=0.397  Sum_probs=63.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +.+..+.+|+.+.|.|.+.|.|.|.++|++++ ..+..       .......+..|.|.++..+|.|.|+|.|.|..|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~-~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   79 (88)
T cd05851           8 FKDTYALKGQNVTLECFALGNPVPVIRWRKIL-EPMPA-------TAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD   79 (88)
T ss_pred             cccEEEeCCCcEEEEEEecccCCCEEEEEECC-cCCCC-------CCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence            34566889999999999999999999999944 33321       11122345579999999999999999999999954


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       ...+.|.|+
T Consensus        80 -~~~~~l~V~   88 (88)
T cd05851          80 -KHQARVYVQ   88 (88)
T ss_pred             -EEEEEEEEC
Confidence             777777763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.63  E-value=2.6e-15  Score=90.11  Aligned_cols=74  Identities=30%  Similarity=0.632  Sum_probs=57.9

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +|+.+.|.|.+.|.|.|.+.|++ ++..+...      ........+.|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVD------RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEE-CCEECCCC------CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEE
Confidence            58899999999999999999999 55444321      11223345689999999999999999999999944 777776


Q ss_pred             EE
Q psy7941         232 HV  233 (238)
Q Consensus       232 ~V  233 (238)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            54

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.62  E-value=5e-15  Score=93.73  Aligned_cols=83  Identities=28%  Similarity=0.415  Sum_probs=63.9

Q ss_pred             CceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEE------EeeceEEEEEeecCCCeEEEEEee
Q psy7941         146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS------VESEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      ..+.+.+|+.+.|.|.+.| .|+|.+.|++ ++.++....    ......      .....|.|.++..+|+|.|+|.|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~   85 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKL----TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS   85 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCc----ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence            4567889999999999999 8899999999 565553211    011111      123579999999999999999999


Q ss_pred             eCCCCCccceEEEEEE
Q psy7941         219 NGVPPTVSKRLMLHVH  234 (238)
Q Consensus       219 n~~g~~~~~~~~l~V~  234 (238)
                      |..|. .+.++.|.|+
T Consensus        86 N~~G~-~~~t~~L~V~  100 (101)
T cd04975          86 NSDAS-KSLTFELYVN  100 (101)
T ss_pred             CCCcc-EEEEEEEEEE
Confidence            99994 4888888876

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.61  E-value=1.2e-14  Score=90.09  Aligned_cols=86  Identities=20%  Similarity=0.312  Sum_probs=64.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|...+.+..+.+|+++.|.|.+.                          +.|.|.++|+|++.....         .
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~--------------------------G~P~P~v~W~k~~~~~~~---------~   45 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFAL--------------------------GNPVPVIRWRKILEPMPA---------T   45 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEec--------------------------ccCCCEEEEEECCcCCCC---------C
Confidence            58889999999999999999999985                          466888999998754321         1


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .++...     ...|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        46 ~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          46 AEISMS-----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             CEEecC-----CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            122221     128999999999999999999886 33444555544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.61  E-value=7.3e-15  Score=91.45  Aligned_cols=82  Identities=28%  Similarity=0.490  Sum_probs=64.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .....+.+|+.+.|.|.+.|. .|.+.|++ ++..+...      .......+..|.|.++..+|+|.|.|.|.|..|..
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLLVPP------RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEECCCC------CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            445678899999999999999 99999999 44443211      11122334589999999999999999999999987


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      .+..+.|.|+
T Consensus        82 ~S~~~~L~V~   91 (91)
T cd05740          82 TSDPYILNVN   91 (91)
T ss_pred             EeeeEEEEeC
Confidence            7888888874

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=9.1e-15  Score=92.31  Aligned_cols=85  Identities=25%  Similarity=0.501  Sum_probs=64.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...    ............|.|.++..+|.|.|+|.|.|..|. 
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-   83 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-   83 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-
Confidence            344568899999999999999999999999 55444321    011111223447999999999999999999999995 


Q ss_pred             ccceEEEEEEe
Q psy7941         225 VSKRLMLHVHC  235 (238)
Q Consensus       225 ~~~~~~l~V~~  235 (238)
                      ...++.|.|..
T Consensus        84 ~~~~~~L~V~~   94 (95)
T cd05730          84 QEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEEEe
Confidence            47888888764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.60  E-value=7.3e-15  Score=90.57  Aligned_cols=82  Identities=23%  Similarity=0.404  Sum_probs=61.1

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-EeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+....   ....... ...+.|.|..+..+|+|.|+|.|.|..|.. 
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~~~---~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTETE---GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECccCC---CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-
Confidence            3567889999999999999999999999 555443211   0011111 123579999999999999999999999954 


Q ss_pred             cceEEEEE
Q psy7941         226 SKRLMLHV  233 (238)
Q Consensus       226 ~~~~~l~V  233 (238)
                      +.++.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            77777654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.60  E-value=5.8e-15  Score=87.94  Aligned_cols=73  Identities=25%  Similarity=0.544  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+...      .......++.|.|.++..+|.|.|+|.|.|..|.. +.+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~------~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNN------SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEe-CCEecccC------CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence            5789999999999999999999 44443211      22333345689999999999999999999999954 6666665


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.59  E-value=3.7e-14  Score=89.94  Aligned_cols=86  Identities=28%  Similarity=0.512  Sum_probs=61.4

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCC-eeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-KEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++... ..+...... ........   ....|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~-~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKS-PDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcC-cCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            45678899999999999999999999998532 222111100 01111111   23479999999999999999999999


Q ss_pred             CCCccceEEEEE
Q psy7941         222 PPTVSKRLMLHV  233 (238)
Q Consensus       222 g~~~~~~~~l~V  233 (238)
                      |.. .+++.|.|
T Consensus        88 G~~-~~~~~l~~   98 (98)
T cd05870          88 GGH-QKSMYLDI   98 (98)
T ss_pred             Ccc-eeEEEEeC
Confidence            944 77777764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.58  E-value=8.2e-15  Score=85.22  Aligned_cols=66  Identities=29%  Similarity=0.502  Sum_probs=52.9

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.|.+.|+|.|.+.|++ ++..+...           ...+.|.|.++..+|+|.|+|.|.|..| ..++++.+.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~-----------~~~~~L~i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYK-DGKLISGK-----------HSQHSLQIKDVTEASAGTYTLVLWNSAA-GLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEE-CCEECccc-----------CCcCEEEECCCCHHHCEEEEEEEEECCc-cEEEEEEEEEE
Confidence            4789999999999999999 56555311           1345799999999999999999999999 44777766653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.58  E-value=1.8e-14  Score=88.60  Aligned_cols=82  Identities=23%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             CcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCCcce-EEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         154 GSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSSQKV-FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       154 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      +++.|.|.+.|.|.|  .+.|++ ++..+............ .....+.|.|.+++..|+|.|+|.|.|..| ..++++.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g-~~~~~~~   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVD-SASASAT   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEE-CCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCC-CEEEEEE
Confidence            368999999999877  689999 55444321110010011 112345899999999999999999999999 4488999


Q ss_pred             EEEEeec
Q psy7941         231 LHVHCTY  237 (238)
Q Consensus       231 l~V~~~p  237 (238)
                      |.|..||
T Consensus        79 L~V~~~P   85 (85)
T cd05854          79 LVVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            9999887

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.58  E-value=3.1e-14  Score=88.54  Aligned_cols=81  Identities=22%  Similarity=0.447  Sum_probs=62.7

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ....+..|+.+.|.|.+.|.|. .+.|+++++..+...      .......+   ..|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~------~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G   80 (92)
T cd05866           8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS------QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   80 (92)
T ss_pred             cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC------CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence            3456888999999999999998 999998656544321      11222222   3799999999999999999999999


Q ss_pred             CCccceEEEEE
Q psy7941         223 PTVSKRLMLHV  233 (238)
Q Consensus       223 ~~~~~~~~l~V  233 (238)
                      ....+++.|.|
T Consensus        81 ~~~~~~i~l~~   91 (92)
T cd05866          81 QTQEATVVLEI   91 (92)
T ss_pred             cEEEEEEEEEE
Confidence            76688888876

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.58  E-value=2.1e-14  Score=88.96  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      |+.+.|.|.+.|.|.+.+.|++ ++..+....   .......     ...+.|.|.++..+|+|.|+|.|.|..|. .+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~~---~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~   75 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPEM---SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRG   75 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEee-CCEECCCCC---CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceE
Confidence            6789999999999999999999 444432111   0010110     11246999999999999999999999995 489


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      .+.|.|..+|
T Consensus        76 ~~~L~V~~~P   85 (88)
T cd05735          76 IIQLTVQEPP   85 (88)
T ss_pred             EEEEEEeCCC
Confidence            9999999877

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.58  E-value=2.8e-14  Score=89.39  Aligned_cols=83  Identities=18%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....    .......  ....|.|.++..+|+|.|+|.|.|..|
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD----HYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC----CEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence            445678899999999999999999999999 554443211    0111111  123699999999999999999999999


Q ss_pred             CCccceEEEEE
Q psy7941         223 PTVSKRLMLHV  233 (238)
Q Consensus       223 ~~~~~~~~l~V  233 (238)
                      .. +..+.|.|
T Consensus        83 ~~-~~~~~v~v   92 (92)
T cd05737          83 GE-TVDVTVSV   92 (92)
T ss_pred             cc-eEEEEEeC
Confidence            44 66666654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.58  E-value=4e-14  Score=88.89  Aligned_cols=83  Identities=17%  Similarity=0.384  Sum_probs=60.3

Q ss_pred             CceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEEEeeeC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ....+..|+.+.|.|.+.|.|. |.+.|++.++..+....     .......    .+.|.|.++..+|+|.|+|.|.|.
T Consensus         8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~-----~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ-----QRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC-----CeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            3446788999999999999985 69999985554332211     1111111    247999999999999999999999


Q ss_pred             CCCCccceEEEEE
Q psy7941         221 VPPTVSKRLMLHV  233 (238)
Q Consensus       221 ~g~~~~~~~~l~V  233 (238)
                      .|....+++.|.|
T Consensus        83 ~~g~~~~s~~l~v   95 (96)
T cd05865          83 DEGESEATVNVKI   95 (96)
T ss_pred             CCCcEEEEEEEEE
Confidence            8335477877776

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.57  E-value=1.1e-13  Score=86.50  Aligned_cols=91  Identities=19%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      .+++.+.+|+++.|.|.+.+                          .|.+.+.|++++..... ........+.|+.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g--------------------------~~~~~v~W~k~~~~~~~-~~~~~~~~~~r~~~~~   56 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKE--------------------------HDNSSLQWSNTAQQTLY-FGEKRALRDNRIQLVK   56 (95)
T ss_pred             cccEEEecCCcEEEEEEEeC--------------------------CCCCeEEEeccCccEEE-eCCeEEEeCCeEEEEe
Confidence            45788999999999999964                          34567999998765332 2223333456777665


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE  132 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~  132 (238)
                      .....++|.|.+++.+|+|.|+|.+.......+.+.+.
T Consensus        57 ~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~   94 (95)
T cd05882          57 STPTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVT   94 (95)
T ss_pred             CCCceEEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence            55567899999999999999999997655445555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.57  E-value=2.6e-14  Score=88.11  Aligned_cols=80  Identities=30%  Similarity=0.497  Sum_probs=62.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...      . .....++.|.|.++..+|+|.|+|.|.|..|. 
T Consensus         6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~~------~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-   76 (85)
T cd05728           6 ISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLASE------N-RIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-   76 (85)
T ss_pred             CCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCCC------C-eEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-
Confidence            445678899999999999999999999999 55444211      1 12335668999999999999999999999994 


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      ...++.|.|
T Consensus        77 ~~~~~~l~V   85 (85)
T cd05728          77 IYASAELAV   85 (85)
T ss_pred             EEEEEEEEC
Confidence            477776654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=2.1e-14  Score=86.61  Aligned_cols=75  Identities=35%  Similarity=0.498  Sum_probs=57.4

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.++|++ ++..+....   . .......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~~~~---~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSI-NGAPIEGTD---P-DPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEE-CCEECCCCC---C-CceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence            6789999999999999999999 555443211   1 11223345689999999999999999999999954 6677776


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.57  E-value=2.6e-14  Score=90.57  Aligned_cols=86  Identities=20%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ...+..|+.+.|.|.+.|+|.|.+.|++ ++.++.......   ..........+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            3567788999999999999999999999 555543221100   000000112357999999999999999999999994


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                       .+.++.|.|+
T Consensus        91 -~~~t~~l~V~  100 (101)
T cd05859          91 -KSYTFALQIQ  100 (101)
T ss_pred             -EEEEEEEEEE
Confidence             4778888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.57  E-value=1.1e-13  Score=86.05  Aligned_cols=91  Identities=21%  Similarity=0.405  Sum_probs=69.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      .+++.+.+|+++.|+|.+.+.....                          +.|++.+...+.... .....+.||.+..
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~--------------------------v~w~~~~~~~i~~~~-~~~~~d~Rf~~~~   56 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSV--------------------------IQLLNPNRQTIYFRD-VRPLKDSRFQLVN   56 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccE--------------------------EEEEecCCcEEEecC-ccccCCcCEEEEe
Confidence            4568899999999999998755433                          889987755443333 3444688999887


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE  132 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~  132 (238)
                      .....++|.|.+++.+|+|.|+|.+.........+.+.
T Consensus        57 ~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~   94 (95)
T cd05881          57 FSSNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT   94 (95)
T ss_pred             CCCCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence            56788899999999999999999997766555554443

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.56  E-value=4.4e-14  Score=87.82  Aligned_cols=81  Identities=26%  Similarity=0.421  Sum_probs=62.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..... .       ......++.|.|.++..+|+|.|+|.|.|..|. 
T Consensus         8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~-~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-   78 (88)
T cd04968           8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS-S-------AEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-   78 (88)
T ss_pred             CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC-c-------cEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-
Confidence            3446678899999999999999999999995543221 1       111235568999999999999999999999995 


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      ...+..|.|+
T Consensus        79 ~~~~~~l~V~   88 (88)
T cd04968          79 DTHQGRIYVQ   88 (88)
T ss_pred             EEEEEEEEEC
Confidence            4777777763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=2.2e-14  Score=87.21  Aligned_cols=78  Identities=26%  Similarity=0.510  Sum_probs=56.8

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.|+|.|.+.|+++++......... ..........++.|.|.++..+|+|.|.|.|.|..|...++++.|.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4799999999999999999544321111000 01122223345689999999999999999999999988788888765

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.56  E-value=2.2e-14  Score=85.76  Aligned_cols=72  Identities=26%  Similarity=0.451  Sum_probs=52.2

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe-e--ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-S--EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+....    ........ .  ..|.|.++..+|+|.|+|.|.|..|.. +.+..|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKR-NNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEE-CCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence            4799999999999999999 555543211    11111111 1  269999999999999999999999944 6666665


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        75 V   75 (75)
T cd05892          75 V   75 (75)
T ss_pred             C
Confidence            4

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.56  E-value=5.4e-14  Score=87.11  Aligned_cols=82  Identities=30%  Similarity=0.565  Sum_probs=63.0

Q ss_pred             CceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+...     .........+.|.|.++..+|+|.|+|.+.|..|..
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLD-----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCCC-----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence            45677899999999998 789999999999 55443321     112222335689999999999999999999999977


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .++.+.|.|
T Consensus        78 ~s~~~~l~V   86 (86)
T cd05724          78 ESAAARLSV   86 (86)
T ss_pred             eeeeEEEEC
Confidence            677777654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.56  E-value=2e-13  Score=92.35  Aligned_cols=120  Identities=23%  Similarity=0.364  Sum_probs=75.6

Q ss_pred             EEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccC-CeEEEEeCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT-PKITWRREDN  177 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~  177 (238)
                      +|.|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.+....  .......|..+.|.|.+.| +|. ..+.|++++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeC--CCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            7999999999999999999764 444556778888888775432  2233346888999999988 565 4899999543


Q ss_pred             eeeE----eecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         178 KEII----VRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       178 ~~~~----~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ....    ....    ......-.....+.|.+..-...+...|+|.+.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            2111    0000    0000000111223455544333445599999998764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.56  E-value=7.6e-14  Score=87.05  Aligned_cols=83  Identities=28%  Similarity=0.545  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      |+.+.|.|.+.|.|.|.+.|++++......... ...........++.|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence            678999999999999999999965433211110 01112222333557999999999999999999999995 4788899


Q ss_pred             EEEee
Q psy7941         232 HVHCT  236 (238)
Q Consensus       232 ~V~~~  236 (238)
                      .|..+
T Consensus        80 ~V~~~   84 (90)
T cd05726          80 EVTDV   84 (90)
T ss_pred             EEeec
Confidence            99864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.56  E-value=1.8e-14  Score=86.24  Aligned_cols=71  Identities=25%  Similarity=0.461  Sum_probs=51.8

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee----ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES----EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+....     ........    ..|.|.++..+|+|.|+|.|.|..|.. +.+..|
T Consensus         1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L   73 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKK-ENESLTHNT-----DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARL   73 (75)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECCCCC-----CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEE
Confidence            4799999999999999999 444442111     11112111    159999999999999999999999944 667766


Q ss_pred             EE
Q psy7941         232 HV  233 (238)
Q Consensus       232 ~V  233 (238)
                      .|
T Consensus        74 ~V   75 (75)
T cd05893          74 DV   75 (75)
T ss_pred             eC
Confidence            54

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.55  E-value=6.5e-14  Score=88.63  Aligned_cols=83  Identities=25%  Similarity=0.488  Sum_probs=58.6

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+..|+.+.|.|.+.|.|.|.++|++ ++..+...... .......   ...+.|.|.++..+|.|.|+|.|.|..|..
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   89 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEKT-LDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQD   89 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCccc-cCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCe
Confidence            345558999999999999999999999 44333211100 0111111   112479999999999999999999999944


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                       +.++.|.|
T Consensus        90 -~~~~~l~v   97 (97)
T cd05869          90 -SQSMYLEV   97 (97)
T ss_pred             -eEEEEEEC
Confidence             77777765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.55  E-value=2e-14  Score=85.40  Aligned_cols=71  Identities=28%  Similarity=0.481  Sum_probs=54.5

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.|.+.|.|.|.+.|+++++. +...      ..........|.|.++..+|.|.|+|.|.|..|. .++++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~-~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGP-LSPN------RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcC-CCCC------ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEEC
Confidence            46899999999999999995543 2211      1112334568999999999999999999999995 4788888763

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.55  E-value=1.4e-13  Score=86.02  Aligned_cols=78  Identities=26%  Similarity=0.517  Sum_probs=63.3

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..         ..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~--------------------------~p~~~v~W~~~~~~l~~---------~~   45 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSG--------------------------NPPPTVTWYKNGRPLTS---------SQ   45 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEE--------------------------SSSSEEEEEETTEEEES---------SS
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEe--------------------------CCCCcccccccccceee---------ee
Confidence            78899999999999999999999964                          34678999998665432         44


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ++.+.... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus        46 ~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen   46 RYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             SEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred             eeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence            55554433 5669999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.55  E-value=3.5e-14  Score=84.38  Aligned_cols=71  Identities=27%  Similarity=0.490  Sum_probs=53.4

Q ss_pred             cEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       155 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      ++.|.|.+.|.|.|.++|++++ ..+...      ........+.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g-~~~~~~------~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNG-DMVIPS------DYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECC-eECCCC------CCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence            3789999999999999999944 433211      11223344568899999999999999999999944 67776654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.55  E-value=4.1e-14  Score=85.17  Aligned_cols=75  Identities=25%  Similarity=0.520  Sum_probs=57.3

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.++|++ ++..+.....    .......+..|.+.+++.+|.|.|+|.|.|..|. ...++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~----~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLT-NGVPIEIAPT----DPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEE-CCEEccccCC----CceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEE
Confidence            5788999999999999999999 5655532111    1112234457899999999999999999999994 47777777


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            6

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=2.5e-14  Score=88.27  Aligned_cols=82  Identities=22%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             CcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         154 GSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       154 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      +.+.|.|.+.|.|.|  .+.|++ ++..+......... ........+.|.|.+++..|+|.|+|.|.|..|. .++++.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEE-CCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEE
Confidence            368999999999887  679999 55554322110000 0111223567999999999999999999999994 488999


Q ss_pred             EEEEeec
Q psy7941         231 LHVHCTY  237 (238)
Q Consensus       231 l~V~~~p  237 (238)
                      |.|..||
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            9999887

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.54  E-value=8e-14  Score=83.68  Aligned_cols=74  Identities=31%  Similarity=0.579  Sum_probs=57.0

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.+.|++.++..+...      ........+.|.|..+..+|.|.|+|.|.|..|. .+.++.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS------SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC------CeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence            6789999999999999999998555544311      1122334568999999999999999999999994 47777665


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        74 v   74 (74)
T cd05764          74 I   74 (74)
T ss_pred             C
Confidence            4

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.54  E-value=2.4e-13  Score=85.34  Aligned_cols=92  Identities=23%  Similarity=0.452  Sum_probs=65.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ++++.+.+|+++.|.|.+.+.                          |.+.+.|++.++..+.. .......++|+....
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~--------------------------p~~~v~W~~~~~~~l~~-~~~~~~~~~r~~~~~   56 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQN--------------------------DNTSLQWSNPAQQTLYF-DDKKALRDNRIELVR   56 (95)
T ss_pred             cceEEEecCCcEEEEEEEecC--------------------------CceEEEEeCCCCeEEEE-cCcccccCCCEEEEE
Confidence            467889999999999999643                          35669999865543321 111122356777644


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .....++|.|.+++.+|+|.|+|.+.+.......+.|.|
T Consensus        57 ~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v   95 (95)
T cd07701          57 ASWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV   95 (95)
T ss_pred             CCCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence            444667999999999999999999977655566666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.54  E-value=4.2e-14  Score=84.77  Aligned_cols=74  Identities=30%  Similarity=0.533  Sum_probs=56.5

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+...    .........++.|.|.++..+|+|.|+|.|.|..|...+..+.|.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~----~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFK-DFLPVDTT----SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECccC----CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            4789999999999999999 44443211    11222333455799999999999999999999999777888888763

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.53  E-value=5.4e-14  Score=84.95  Aligned_cols=75  Identities=31%  Similarity=0.486  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+.....    ..........|.|.++..+|.|.|+|.|.|..|.. ...+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRL-NGVPIEELPP----DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEE-CCEECCCCCC----cceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEE
Confidence            6789999999999999999999 5554432111    11233445689999999999999999999999954 7777777


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.53  E-value=5.3e-14  Score=90.74  Aligned_cols=83  Identities=20%  Similarity=0.417  Sum_probs=60.8

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcce---EEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccc
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV---FSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      .|..+.|.|.+.|.|.+.+.|++ ++..+.... .......   .....+.|.|.++. .+|.|.|+|.|.|..|.. ..
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~   98 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAK-NGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL   98 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEE-CCEECCCCC-CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence            56889999999999999999999 555443211 0000000   01113578999987 589999999999999955 89


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      ++.|.|..+|
T Consensus        99 ~i~L~~~~~p  108 (109)
T cd05773          99 DIQLVSTSRP  108 (109)
T ss_pred             EEEEEecCCC
Confidence            9999999887

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.53  E-value=7e-14  Score=83.63  Aligned_cols=73  Identities=27%  Similarity=0.506  Sum_probs=56.1

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.++|++ ++..+...      ........+.|.|.++..+|+|.|+|.|.|..|.. ..++.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSK-GTELLTNS------SRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEE-CCEEcccC------CCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence            6789999999999999999999 44443211      12223344579999999999999999999999944 6676665


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=1.1e-13  Score=86.26  Aligned_cols=82  Identities=27%  Similarity=0.429  Sum_probs=60.4

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....   ............|.|.++..+|.|.|+|.|.|..|.. .
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~-g~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~   83 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIA-GLIVIQTR---TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-N   83 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEEC-CEEccCCc---cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence            45588999999999999999999999994 44332111   0001111234479999999999999999999999954 7


Q ss_pred             ceEEEEE
Q psy7941         227 KRLMLHV  233 (238)
Q Consensus       227 ~~~~l~V  233 (238)
                      .++.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            7777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.53  E-value=2.9e-13  Score=84.77  Aligned_cols=74  Identities=27%  Similarity=0.401  Sum_probs=55.6

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      |+.+.+.+|+++.|.|.+.                          +.|.|.+.|+|++..+.         ...++.+..
T Consensus         8 p~~v~v~~G~~v~L~C~v~--------------------------G~P~p~v~W~k~g~~l~---------~~~~~~~~~   52 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVF--------------------------GDPDPEVSWLKNDQALA---------LSDHYNVKV   52 (92)
T ss_pred             CceEEEeCCCcEEEEEEEE--------------------------ecCCCeEEEEECCEECc---------cCCCEEEEE
Confidence            5567899999999999985                          35577899999876532         133444433


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ......+|.|.+++.+|+|.|+|.+.|..
T Consensus        53 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737          53 EQGKYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             cCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence            32334589999999999999999998853

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.52  E-value=3.2e-13  Score=84.62  Aligned_cols=82  Identities=24%  Similarity=0.427  Sum_probs=63.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+.         .
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~--------------------------g~P~p~v~W~k~g~~l~---------~   46 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVD--------------------------GEPAPTVTWMREGQIIV---------S   46 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEe--------------------------ecCCCEEEEEECCEECC---------C
Confidence            478999999999999999999999985                          35577899999865432         1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..++.+... ....+|.|.+++.+|+|.|.|.+.|..+
T Consensus        47 ~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   83 (92)
T cd05747          47 SQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEG   83 (92)
T ss_pred             CCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence            334444322 2234899999999999999999988543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=8.1e-14  Score=83.85  Aligned_cols=74  Identities=28%  Similarity=0.551  Sum_probs=54.1

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.|.|.|.++|++++........   .........+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAAR---ERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCccc---ccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence            47899999999999999995543221110   111112233457999999999999999999999994 477777776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.52  E-value=6.2e-14  Score=85.37  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             CcEEEEEEEcc--ccCCeEEEEeCCCeeeEeecCCCCCcceEE----EeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         154 GSAKLVCKAKG--YPTPKITWRREDNKEIIVRSNPPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       154 ~~~~l~C~~~~--~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      +++.|.|.+.+  .+.+.+.|++ ++.++....   .......    ...+.|.|.+++.+|+|.|+|.|.|..+ ..+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~~~---~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~-~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDFQK---DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD-KLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEE-CCEECcccC---CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC-ceEE
Confidence            36899999976  4577999999 666664211   1111222    2345899999999999999999999999 5599


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      +..|.|+.||
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            9999999998

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.51  E-value=1.7e-13  Score=86.71  Aligned_cols=84  Identities=26%  Similarity=0.500  Sum_probs=60.3

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++ ..+...... .......   .....|.|.++..+|.|.|+|.|.|..|.
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRAT-RNFSEGDKS-LDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECC-cccCCCCcc-ccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            456788999999999999999999999944 332211100 0011111   12347999999999999999999999995


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                      . +.++.|.|
T Consensus        88 ~-~~s~~l~v   96 (96)
T cd05732          88 D-QQSMYLEV   96 (96)
T ss_pred             c-EEEEEEeC
Confidence            4 77777764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.51  E-value=3.5e-13  Score=85.98  Aligned_cols=87  Identities=32%  Similarity=0.601  Sum_probs=59.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-----eecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-----VTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-----~~~~d~G~y~C~~~n  219 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+........ .......++.+.+..     +..+|+|.|+|.|.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N   85 (100)
T cd07693           8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPR-SHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN   85 (100)
T ss_pred             CceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCC-cceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence            445778899999999999999999999999 5554432111011 111122222333222     268899999999999


Q ss_pred             CCCCCccceEEEEE
Q psy7941         220 GVPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~~g~~~~~~~~l~V  233 (238)
                      ..|...++.+.|.|
T Consensus        86 ~~G~~~s~~~~l~v   99 (100)
T cd07693          86 SLGEAVSRNASLEV   99 (100)
T ss_pred             cccceecceEEEEe
Confidence            99976788888876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.51  E-value=2.1e-13  Score=84.96  Aligned_cols=81  Identities=27%  Similarity=0.453  Sum_probs=55.5

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCC---CeeeEeecCCC------CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRRED---NKEIIVRSNPP------SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~---~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |+.+.|.|.+.|.|.|.|+|++++   +..+.......      ............|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999952   11111000000      000001112347999999999999999999999995


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                      . .+++.|.|.
T Consensus        81 ~-~~sa~L~V~   90 (90)
T cd04974          81 S-HHSAWLTVL   90 (90)
T ss_pred             c-cCCEEEEeC
Confidence            4 778888873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.51  E-value=2.6e-13  Score=85.61  Aligned_cols=84  Identities=32%  Similarity=0.594  Sum_probs=61.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe-----ecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV-----TRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~n  219 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....    ........++.+.+.++     ...|.|.|+|.|.|
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~~~----~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNLVS----DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECcccc----CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            344567789999999999999999999999 555443211    11122333456777766     57899999999999


Q ss_pred             C-CCCCccceEEEEE
Q psy7941         220 G-VPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~-~g~~~~~~~~l~V  233 (238)
                      . .|...++.+.|.|
T Consensus        81 ~~~G~~~s~~~~l~v   95 (95)
T cd05722          81 DSLGSIVSRTARLTV   95 (95)
T ss_pred             CccCcEEEeeeEEeC
Confidence            9 9977788887765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.51  E-value=9.8e-14  Score=82.32  Aligned_cols=70  Identities=27%  Similarity=0.506  Sum_probs=53.9

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+...       .........|.|.++..+|+|.|+|.|.|..|. ..+++.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~-------~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYK-NGKLISEK-------NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCCC-------CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEEE
Confidence            4689999999999999999 55554321       122344568999999999999999999999984 4666666653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.51  E-value=4.5e-13  Score=84.93  Aligned_cols=95  Identities=19%  Similarity=0.408  Sum_probs=63.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+. .+.++.+.+|+++.|.|.+.                          +.|.|.++|++..........  ....+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~--------------------------G~P~p~i~W~k~~~g~~~~~~--~~~~~   52 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAE--------------------------GEPIPEITWKRASDGHTFSEG--DKSPD   52 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecc--------------------------cCCCCeEEEEECCCCceeccC--CcCcC
Confidence            56665 46789999999999999985                          456778999996422111100  00113


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE  132 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~  132 (238)
                      .|+.+.. .....+|.|.+++.+|+|.|+|.+.|. +.....+.|+
T Consensus        53 ~r~~v~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          53 GRIEVKG-QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD   97 (98)
T ss_pred             ceEEEee-cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence            4555432 123458999999999999999999876 4444444454

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.50  E-value=1.7e-13  Score=84.59  Aligned_cols=82  Identities=26%  Similarity=0.464  Sum_probs=59.9

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+..|+.+.|.|.+.|.|.|.+.|++ ++..+.....  ............|.|..+..+|+|.|+|.|.|..|. ...
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCCCCc--eeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEE
Confidence            357789999999999999999999999 5544432110  001111122346889999999999999999999994 477


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            777765

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.50  E-value=7.4e-13  Score=83.13  Aligned_cols=86  Identities=24%  Similarity=0.426  Sum_probs=57.7

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ..|....+..|+++.|.|.+..                          .| +|.++|++.++.....       ...++.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G--------------------------~P~~p~i~W~~~~g~~l~~-------~~~r~~   51 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAG--------------------------EAKDKDISWFSPNGEKLTP-------NQQRIS   51 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeC--------------------------CCCCCEEEEECCCCcCccc-------cCCeEE
Confidence            4566667899999999999953                          44 3589999844432211       122444


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEE
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL  131 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l  131 (238)
                      +........+|.|.+++.+|+|.|+|.+.|.......+.+
T Consensus        52 v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~   91 (96)
T cd05865          52 VVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV   91 (96)
T ss_pred             EEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence            3333333458999999999999999999886433333333

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.50  E-value=2.9e-13  Score=80.88  Aligned_cols=66  Identities=21%  Similarity=0.388  Sum_probs=46.7

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE  132 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~  132 (238)
                      .+.|.|.+.|+|++..+..        ...|+.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus         8 ~G~P~P~i~W~k~~~~i~~--------~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           8 SAIPPPKIFWKRNNEMVQY--------NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             EecCCCeEEEEECCEECcC--------CCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            3567889999998765421        1345665554445568999999999999999999886 3344455554

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.50  E-value=2.1e-13  Score=85.25  Aligned_cols=82  Identities=17%  Similarity=0.396  Sum_probs=60.2

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ....+..|+.+.|.|.+.|.| +.+.|++.++..+....     ......   ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           8 SQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQ-----QISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             CcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCC-----CEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            346688899999999999987 49999985554443211     111111   224799999999999999999999987


Q ss_pred             CCccceEEEEE
Q psy7941         223 PTVSKRLMLHV  233 (238)
Q Consensus       223 ~~~~~~~~l~V  233 (238)
                      ....+++.|+|
T Consensus        82 ~~~~~sv~l~~   92 (92)
T cd04977          82 TESEATVNLKI   92 (92)
T ss_pred             CcceeEEEEEC
Confidence            56677877764

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.50  E-value=5e-13  Score=83.04  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=61.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+..+.+.+|+++.|.|.+.                          +.|.|.+.|++++.....         .
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~---------~   45 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFAL--------------------------GNPVPQIKWRKVDGSMPS---------S   45 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEee--------------------------EeCCCEEEEEECCCcCCC---------c
Confidence            34566778888999999999999985                          345778999997764321         1


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      ......     ...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus        46 ~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          46 AEISMS-----GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             cEEEEe-----CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            111111     128999999999999999999875 33444555554

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.49  E-value=2.1e-13  Score=85.56  Aligned_cols=74  Identities=28%  Similarity=0.555  Sum_probs=55.7

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEE
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      +|+.+.|.|.+.|.|.|.++|++ ++..+....     .......++.|.|.++. .+|.|.|+|.|.|..|...++.+.
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~~~-----~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~   91 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLR-NGTEIDTES-----DYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREAL   91 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEE-CCeECccCC-----CceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEE
Confidence            47899999999999999999999 555543211     11223345678888875 699999999999999977666665


Q ss_pred             E
Q psy7941         231 L  231 (238)
Q Consensus       231 l  231 (238)
                      |
T Consensus        92 l   92 (94)
T cd05848          92 L   92 (94)
T ss_pred             E
Confidence            4

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.49  E-value=1.4e-13  Score=82.65  Aligned_cols=74  Identities=27%  Similarity=0.412  Sum_probs=53.4

Q ss_pred             cEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       155 ~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+.|.|.+.|.|.|.+.|++ ++..+....   ............|.|.++..+|+|.|+|.|.|..|. .+.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSK-DGKPLKLSG---RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEE-CCEEcCCCC---eEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence            36899999999999999999 454442110   000111112457999999999999999999999994 477777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=1.2e-13  Score=81.63  Aligned_cols=69  Identities=28%  Similarity=0.538  Sum_probs=52.5

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.|.|.|.+.|+++++. +..       ..........|.|.++..+|+|.|+|.|.|..|.. ..++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~-~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGE-LPK-------GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCcc-CCC-------CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence            47899999999999999995432 211       11222355689999999999999999999999944 66666654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.49  E-value=1.8e-13  Score=82.16  Aligned_cols=72  Identities=21%  Similarity=0.415  Sum_probs=52.0

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+....    ........   ...|.|.++..+|+|.|+|.|.|..|.. +.++.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~----~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKK-NNEMLTYNT----DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEE-CCEECCCCC----CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            4799999999999999999 555443211    11111111   1269999999999999999999999944 6666665


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus        75 v   75 (75)
T cd05744          75 V   75 (75)
T ss_pred             C
Confidence            4

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.49  E-value=4.1e-13  Score=84.28  Aligned_cols=73  Identities=23%  Similarity=0.473  Sum_probs=54.5

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      |+.+.|.|.+.|.|.|.++|++ ++..+....     .......++.|.|.++. .+|.|.|.|.|.|..|...++.+.|
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~-~g~~l~~~~-----~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKM-NGTEIKFAP-----ESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEE-CCEECccCC-----CceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            4689999999999999999999 555443211     11122345678887765 5899999999999999776776665

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.49  E-value=2.7e-13  Score=84.94  Aligned_cols=82  Identities=26%  Similarity=0.482  Sum_probs=60.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....   ..........+.|.|.++..+|.|.|+|.|.|..|. 
T Consensus        10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-   84 (92)
T cd05747          10 PRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQ---RHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-   84 (92)
T ss_pred             CccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCC---cEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-
Confidence            456788999999999999999999999999 454432110   001111112357999999999999999999999994 


Q ss_pred             ccceEEE
Q psy7941         225 VSKRLML  231 (238)
Q Consensus       225 ~~~~~~l  231 (238)
                      .+.++.|
T Consensus        85 ~~~~~~l   91 (92)
T cd05747          85 QEAQFTL   91 (92)
T ss_pred             EeEEEEe
Confidence            3665554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.49  E-value=2.7e-13  Score=81.89  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=54.0

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc-cceEEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV-SKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~-~~~~~l~V~  234 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+....    ...........|.|.++..+|+|.|.|.|.|..|... +..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQ----GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEE-CCEECCCCC----ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4799999999999999999 555442211    1111222345799999999999999999999999543 456777664

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.49  E-value=3.6e-13  Score=84.17  Aligned_cols=83  Identities=20%  Similarity=0.368  Sum_probs=59.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....    .......  ....|.|.++..+|+|.|+|.|.|..|
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSE----HYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCC----CEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            4557789999999999999999999999994 44332110    0011111  113699999999999999999999999


Q ss_pred             CCccceEEEEE
Q psy7941         223 PTVSKRLMLHV  233 (238)
Q Consensus       223 ~~~~~~~~l~V  233 (238)
                      .. ..++.|.|
T Consensus        83 ~~-~~~~~v~~   92 (92)
T cd05891          83 GE-TVDVTVSV   92 (92)
T ss_pred             ce-eeEEEEEC
Confidence            43 56655543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=3e-13  Score=82.77  Aligned_cols=79  Identities=25%  Similarity=0.490  Sum_probs=55.9

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCC--eeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDN--KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      |+.+.|.|.+.|.|.|.+.|+++..  ....... ..............|.|.++..+|+|.|+|.|.|..|. ....+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~   78 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRP-NHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFP   78 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecC-CcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEE
Confidence            6789999999999999999999531  1111111 00111122233457999999999999999999999995 477777


Q ss_pred             EEE
Q psy7941         231 LHV  233 (238)
Q Consensus       231 l~V  233 (238)
                      |.|
T Consensus        79 l~v   81 (81)
T cd05765          79 LSV   81 (81)
T ss_pred             EeC
Confidence            764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.48  E-value=1.8e-13  Score=80.56  Aligned_cols=67  Identities=22%  Similarity=0.492  Sum_probs=50.1

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      +.|.|.+.|.|.|.+.|++ ++.++...      .  ....+..|.|.++..+|+|.|+|.|.|..|.. ....++.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~~------~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~-~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYK-NGQLIVLN------H--TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE-EQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCCC------C--EEccCCEEEECcCCHHHCEEEEEEEEECCCce-eeEEEEE
Confidence            3689999999999999999 55555321      1  11234579999999999999999999999944 3433333

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.48  E-value=1.9e-13  Score=83.89  Aligned_cols=79  Identities=27%  Similarity=0.490  Sum_probs=58.0

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      +....|+.+.|.|.+.|.|.|.+.|++++ ..+....     ..........|.|.++..+|+|.|+|.+.|..|. ...
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~-~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~   76 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDN-KPLTPTE-----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INA   76 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECC-cCCcCCc-----cceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEE
Confidence            34567999999999999999999999944 3332111     0111122347999999999999999999999994 467


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ++.|.|
T Consensus        77 ~~~v~v   82 (82)
T cd05856          77 TYKVDV   82 (82)
T ss_pred             EEEEeC
Confidence            766654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>PHA03376 BARF1; Provisional

Probab=99.48  E-value=5.1e-12  Score=85.79  Aligned_cols=138  Identities=17%  Similarity=0.367  Sum_probs=84.7

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---ceeeee-ee----eeEeec
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TKAVLA-IH----EHVITN   86 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~~~~-~~----~~~~~~   86 (238)
                      ...+.+..|+.+.|+|..+-..                       ..+.+.|+|+|.+   .+.... .+    ..+..+
T Consensus        18 g~pVta~VGEda~LsC~lnp~s-----------------------sa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEy   74 (221)
T PHA03376         18 GQAVTAFLGERVTLTSYWRRVS-----------------------LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPF   74 (221)
T ss_pred             CcchhheeCCcEEEEecccCcc-----------------------CCCceEEEEEecCCCCCCEEEEEcCCeeeeeeecc
Confidence            3467889999999999986221                       1135679999952   222221 11    112345


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ++++.+.... ++++|.|.+++.+|.|.|+|.++.... ......|.+..|-.+.+...-++  ....+...+.|.+.|+
T Consensus        75 RGrtD~~~~~-gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~d--Fp~~~~~~i~C~sggf  151 (221)
T PHA03376         75 RGFFDIHRSA-NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ--FPDFSVLTVTCTVNAF  151 (221)
T ss_pred             ccEEEEEecC-CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEecccc--CCCCCeeEEEEecCCc
Confidence            6677665544 788999999999999999999976433 22222333322111111110000  1114556889998789


Q ss_pred             cCCeEEEEeCCCe
Q psy7941         166 PTPKITWRREDNK  178 (238)
Q Consensus       166 p~~~~~W~~~~~~  178 (238)
                      |.|.++|..+.+.
T Consensus       152 P~P~~~Wle~~~~  164 (221)
T PHA03376        152 PHPHVQWLMPEGV  164 (221)
T ss_pred             CCchheeccccCC
Confidence            9999999986553

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.48  E-value=2.7e-13  Score=84.70  Aligned_cols=84  Identities=30%  Similarity=0.548  Sum_probs=64.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|++ ++..+....   ............|.|.++..+|.|.|+|.+.|..|..
T Consensus         7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~   82 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQ---RYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA   82 (90)
T ss_dssp             SSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSS---SEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE
T ss_pred             cCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeee---eeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE
Confidence            456778999999999999999999999999 565554311   1111112245589999999999999999999998844


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                       +..+.|.|
T Consensus        83 -~~~~~l~V   90 (90)
T PF07679_consen   83 -TASVNLTV   90 (90)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEC
Confidence             77777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=1.1e-13  Score=82.41  Aligned_cols=70  Identities=27%  Similarity=0.560  Sum_probs=52.9

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.|.|.|.+.|+++++ .+...      ..........|.|.++..+|.|.|+|.|.|..| ..++++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~-~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGG-ELPAD------RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG-SARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCe-ECCCC------ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence            4789999999999999999543 22110      111222345799999999999999999999999 4477887776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.47  E-value=5.1e-13  Score=82.32  Aligned_cols=74  Identities=18%  Similarity=0.377  Sum_probs=56.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      |...|.+..+..|+++.|.|.+.                          +.|.|.+.|++++..+.         ...++
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~k~g~~~~---------~~~~~   46 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKAS--------------------------GNPRPAYRWLKNGQPLA---------SENRI   46 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEee--------------------------EeCCCEEEEEECCEECC---------CCCeE
Confidence            56678889999999999999986                          34577899999876532         12334


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .....     .|.|.++..+|+|.|+|.+.|...
T Consensus        47 ~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728          47 EVEAG-----DLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             EEeCC-----EEEEeeCCHHHCEEEEEEEECCCC
Confidence            33222     899999999999999999988643

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.47  E-value=4.3e-13  Score=83.61  Aligned_cols=80  Identities=28%  Similarity=0.438  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCC---CeeeEeecCCC----CCc--ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRRED---NKEIIVRSNPP----SSQ--KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~---~~~~~~~~~~~----~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |+.+.|.|.+.|.|.|.+.|++++   +..+.......    ...  .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999842   22221110000    000  000011247999999999999999999999995


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                       .++++.|.|
T Consensus        81 -~~~~a~L~V   89 (90)
T cd05858          81 -SHHSAWLTV   89 (90)
T ss_pred             -ccceEEEEE
Confidence             478888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.47  E-value=4.3e-13  Score=81.31  Aligned_cols=75  Identities=24%  Similarity=0.385  Sum_probs=56.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.++.+..|+.+.|.|.+.|.|.| .|.|++ ++.++...         .....+.|.|..+  .|.|.|.|.|.|..|.
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~~~---------~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLGDP---------PAPSPSVLNVPGL--NETSKFSCEAHNAKGV   72 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECCCC---------CCCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence            455778999999999999999999 799999 55544210         0122346777766  4789999999999997


Q ss_pred             CccceEEE
Q psy7941         224 TVSKRLML  231 (238)
Q Consensus       224 ~~~~~~~l  231 (238)
                      ..++.+.|
T Consensus        73 ~~s~~a~~   80 (81)
T cd05749          73 TTSRTGTV   80 (81)
T ss_pred             EEeeeEEe
Confidence            66666554

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.47  E-value=1.9e-13  Score=82.01  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             EEEEEEccccCCeEEEEeCCCeeeEeecCCCCC--cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS--QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      .+.|.+.|.|.|.++|++ ++..+.........  ........+.|.|.++..+|+|.|+|.|+|..|+. ++++.+.
T Consensus         2 ~i~~~v~G~P~Pti~W~k-ng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFH-EGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEE-CCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence            368999999999999999 66555322110000  00001123479999999999999999999999954 6766554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=6.2e-13  Score=83.11  Aligned_cols=73  Identities=25%  Similarity=0.478  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +..+.|.|.+.|.|.|.++|++ ++..+...     .. .....++.|.|.++. .+|+|.|.|.|.|..|...++.+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~-----~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRK-NNLDIDLT-----ND-RYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEE-CCEEccCC-----CC-eEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            4579999999999999999999 44443211     11 123345689998875 5899999999999999776766665


Q ss_pred             E
Q psy7941         232 H  232 (238)
Q Consensus       232 ~  232 (238)
                      .
T Consensus        92 ~   92 (93)
T cd05849          92 S   92 (93)
T ss_pred             e
Confidence            3

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.46  E-value=1.6e-13  Score=81.10  Aligned_cols=68  Identities=28%  Similarity=0.575  Sum_probs=51.6

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+...      ........+.|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNK-DGVQVTES------GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEE-CCEECCCC------CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            4799999999999999999 55444211      12223335689999999999999999999999954 666554

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.46  E-value=1.5e-12  Score=82.46  Aligned_cols=90  Identities=10%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ...+.+.+|+++.|.|.+..                         ..|+|.+.|+|++..+... ....+.....    .
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g-------------------------~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~----~   59 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEA-------------------------YPPPPHINWTYDNRTLTNK-LTEIVTSENE----S   59 (101)
T ss_pred             CceEEEECCCCEEEEEEEEe-------------------------cCCCCccEEEeCCeeCCCC-cceeEEEecc----C
Confidence            35778999999999999962                         1457789999987654321 1111110000    0


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ......+|.|.++..+|+|.|+|.+.|..+ ....+.|.|.
T Consensus        60 ~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          60 EYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             cceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            001123899999999999999999988643 3444455554

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.45  E-value=1.7e-12  Score=82.08  Aligned_cols=94  Identities=17%  Similarity=0.357  Sum_probs=62.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|...+....+..|+++.|.|.+.                          +.|.|.++|++++........    ...
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~v~W~~~~~~~~~~~~----~~~   51 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEAS--------------------------GDPIPSITWRTSTRNISSEEK----TLD   51 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEee--------------------------EeCCCEEEEEECCccccCCcc----ccC
Confidence            67887776666666789999999985                          345788999997644221100    012


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE  132 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~  132 (238)
                      +++.+.. ......|.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus        52 ~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          52 GHIVVRS-HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             ccEEEEc-CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            2333222 1223489999999999999999998863 344444444

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.45  E-value=7.6e-13  Score=78.77  Aligned_cols=71  Identities=27%  Similarity=0.492  Sum_probs=51.0

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.+.|+|++..+.         ...++.+....    +|
T Consensus         1 G~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~---------~~~r~~~~~~g----~L   41 (73)
T cd05852           1 GGRVIIECKPK--------------------------AAPKPKFSWSKGTELLV---------NNSRISIWDDG----SL   41 (73)
T ss_pred             CCeEEEEEecc--------------------------eeCCCEEEEEeCCEecc---------cCCCEEEcCCC----EE
Confidence            67899999985                          45678899999765432         23455543322    89


Q ss_pred             EEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLE  132 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~  132 (238)
                      .|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus        42 ~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852          42 EILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             EECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            99999999999999999886 3344444444

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=4.4e-13  Score=80.92  Aligned_cols=72  Identities=25%  Similarity=0.525  Sum_probs=51.6

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec----CCCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR----SEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|.++|++ ++..+....   ..........+.|.|..+..    +|+|.|+|.|.|..|...++.+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k-~g~~l~~~~---~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTR-NGTHFDPEK---DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCCCC---CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            4789999999999999999 554442211   11122223456888888754    689999999999999776766654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.45  E-value=1.1e-12  Score=78.52  Aligned_cols=66  Identities=20%  Similarity=0.376  Sum_probs=45.7

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE  132 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~  132 (238)
                      .+.|.|.+.|+|++..+..        ...++.+.....+..+|.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus         8 ~G~P~P~v~W~k~~~~l~~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           8 SGVPHPQIFWKKENESLTH--------NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             eEecCCEEEEEECCEECCC--------CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            3567889999998765421        13455554443344479999999999999999998863 344455554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.44  E-value=1e-12  Score=79.73  Aligned_cols=76  Identities=13%  Similarity=0.360  Sum_probs=56.4

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ...+.+|+.+.|.|.+.+. .+.+.|++ ++.++...      .. ....+..|.|.++..+|+|.|+|.|.|..|.. .
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~------~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~   72 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN------NR-TRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-T   72 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC------ce-EEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-c
Confidence            3567889999999999885 56899999 55554321      11 12234579999999999999999999999843 5


Q ss_pred             ceEEEE
Q psy7941         227 KRLMLH  232 (238)
Q Consensus       227 ~~~~l~  232 (238)
                      ..+.|.
T Consensus        73 ~~~~v~   78 (79)
T cd04973          73 TYFSVN   78 (79)
T ss_pred             EEEEEe
Confidence            555444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.44  E-value=7.4e-13  Score=77.96  Aligned_cols=68  Identities=29%  Similarity=0.600  Sum_probs=48.4

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....      . .......|.|.++  .|+|.|+|.|.|..|. ...++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~-g~~l~~~~------~-~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~-~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKG-GEELTKED------E-MPVGRNVLELTNI--YESANYTCVAISSLGM-IEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEEC-CEECCCcc------c-eecCccEEEEecc--ccCeeEEEEEEeCCCE-EEEEEEE
Confidence            57899999999999999999994 44432111      1 1123346888776  4799999999999994 3555544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.44  E-value=2.1e-12  Score=81.47  Aligned_cols=89  Identities=17%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             cceecc--CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           9 PDFLYP--LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         9 p~~~~~--~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      |.|...  +..+.+..|+++.|.|.+.                          +.|.|.+.|++++..+...        
T Consensus         2 p~i~~~~~~~~~~~~~G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~--------   47 (95)
T cd05730           2 PTIRARQSEVNATANLGQSVTLACDAD--------------------------GFPEPTMTWTKDGEPIESG--------   47 (95)
T ss_pred             CccccCCcccceEEeCCCCEEEEEecc--------------------------EeCCCEEEEEECCEECcCC--------
Confidence            444433  3456789999999999985                          3457889999977643211        


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      ..++.....   ...|.|.+++.+|.|.|+|.+.|.. .....+.|.|.
T Consensus        48 ~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          48 EEKYSFNED---GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCEEEEeCC---CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            122222211   1279999999999999999998864 34555556654

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.44  E-value=2.3e-12  Score=80.57  Aligned_cols=84  Identities=27%  Similarity=0.369  Sum_probs=58.1

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .|..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..         ..++...
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~--------------------------g~P~p~i~W~k~~~~~~~---------~~~~~~~   51 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVF--------------------------GNPDPEVIWFKNDQDIEL---------SEHYSVK   51 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEE--------------------------EeCCCeEEEEECCEECCC---------CCCEEEE
Confidence            45678899999999999985                          345678999998765321         2333333


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .......+|.|.+++.+|+|.|+|.+.|... ...+.+.|
T Consensus        52 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~v   90 (92)
T cd05891          52 LEQGKYASLTIKGVTSEDSGKYSINVKNKYG-GETVDVTV   90 (92)
T ss_pred             EcCCCEEEEEECCCChhhCEEEEEEEEeCCC-ceeeEEEE
Confidence            2222334899999999999999999987532 33334443

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.44  E-value=3.1e-13  Score=79.72  Aligned_cols=69  Identities=20%  Similarity=0.363  Sum_probs=49.7

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|.+.|++ ++.++....      ......+..|.|.++..+|+|.|+|.|.|... ......++|
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~~------~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLK-DGLPAAEKC------SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEE-CCEECCCCC------cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            3689999999999999999 554442210      11223445899999999999999999999864 333444444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.44  E-value=2.2e-12  Score=79.50  Aligned_cols=74  Identities=19%  Similarity=0.327  Sum_probs=55.1

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ..+.+..|+++.|.|.+.                          +.|.|.+.|++++..+...        ..++.+...
T Consensus         3 ~~~~v~~G~~v~l~c~~~--------------------------G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~   48 (86)
T cd05894           3 NTIVVVAGNKLRLDVPIS--------------------------GEPAPTVTWSRGDKAFTET--------EGRVRVESY   48 (86)
T ss_pred             CEEEEEcCCEEEEEeeEe--------------------------ecCCCeEEEEECCEECccC--------CCeEEEEEc
Confidence            357789999999999995                          4668899999987654321        224444332


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .....|.|.++..+|+|.|+|.+.|..+
T Consensus        49 -~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   76 (86)
T cd05894          49 -KDLSSFVIEGAEREDEGVYTITVTNPVG   76 (86)
T ss_pred             -CCeEEEEECCCccCcCEEEEEEEEeCCC
Confidence             2244899999999999999999988644

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.44  E-value=2.9e-12  Score=79.90  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ..++..+.+..|+++.|.|.+.                          +.|.|.+.|++++..+..         .....
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~--------------------------G~P~p~v~W~~~g~~~~~---------~~~~~   48 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAE--------------------------GSPLPKVEWIIAGLIVIQ---------TRTDT   48 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEE--------------------------EcCCCeEEEEECCEEccC---------CccEE
Confidence            4566777799999999999995                          456888999998765321         11111


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE  132 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~  132 (238)
                      .. ......+|.|.++..+|.|.|+|.+.|..+ ....+.|.
T Consensus        49 ~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          49 LE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            11 112234899999999999999999988643 34444443

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.44  E-value=2e-12  Score=78.74  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=58.1

Q ss_pred             CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEE
Q psy7941          24 RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLN  103 (238)
Q Consensus        24 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (238)
                      +++.|+|.+...                        ..+++.+.|++++..+...      ....+|...........|.
T Consensus         1 ~~~~l~C~v~~d------------------------~~l~~~~~W~~dg~~i~~~------~~~~~~~~~~~~~~~~~L~   50 (85)
T cd05853           1 ESIVLPCQVSHD------------------------HSLDIVFTWSFNGHLIDFQ------KDGDHFERVGGQDSAGDLM   50 (85)
T ss_pred             CcEEEEEEeccC------------------------CCCCcEEEEEECCEECccc------CCCccEEEeccCCCCCcEE
Confidence            468899998642                        2335679999988765321      1123444322212233899


Q ss_pred             EcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941         104 IRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP  137 (238)
Q Consensus       104 i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~  137 (238)
                      |.+++..|+|.|+|.+++. ......+.|.|..||
T Consensus        51 I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          51 IRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             EecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            9999999999999999885 556778889998776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.44  E-value=2.4e-12  Score=81.40  Aligned_cols=93  Identities=23%  Similarity=0.362  Sum_probs=61.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|. .+.+..+.+|+++.|.|.+.+                          .|.|.+.|++++..+....    ....
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~----~~~~   50 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEG--------------------------DPIPEITWRRATRNFSEGD----KSLD   50 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeE--------------------------cCCCcEEEEECCcccCCCC----cccc
Confidence            57775 566788999999999999853                          4567899999763321100    0012


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE  132 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~  132 (238)
                      +++.+.. .....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.
T Consensus        51 ~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          51 GRIVVRG-HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             ceEEEeC-CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            2333322 22345899999999999999999988633 34444443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.43  E-value=4.8e-13  Score=81.25  Aligned_cols=72  Identities=19%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcce------EEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV------FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      .|.|.+.|.|.|.++|++ ++..+.....  .....      .....+.|.|.++..+|+|.|+|.|.|..|.. ++++.
T Consensus         2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~   77 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYH-NGAVLNESDY--IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSIS   77 (81)
T ss_pred             eEEEEeEeeCCCcEEEEE-CCEECcCCCc--eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEE
Confidence            468999999999999999 6655532211  00000      01123469999999999999999999999943 66665


Q ss_pred             EE
Q psy7941         231 LH  232 (238)
Q Consensus       231 l~  232 (238)
                      |.
T Consensus        78 ~~   79 (81)
T cd04971          78 AH   79 (81)
T ss_pred             ee
Confidence            43

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.43  E-value=4.6e-12  Score=79.85  Aligned_cols=91  Identities=22%  Similarity=0.446  Sum_probs=61.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      .+.+.+.+|+++.|.|.+.+.                          +.+.+.|++.++..... .........|+.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~~p~~~~~~~-~~~~~~~~~r~~~~~   56 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNN--------------------------DNSSLQWSNPNQQTLYF-NDKRALRDNRIQLVN   56 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCC--------------------------CCceEEEeCCCCcEEEe-ccccccccCcEEEEc
Confidence            356789999999999998542                          24469999865443221 111112345777654


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE  132 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~  132 (238)
                      .....++|.|.+++.+|+|.|+|.+.......+.+.|.
T Consensus        57 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~   94 (95)
T cd05717          57 FSANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVT   94 (95)
T ss_pred             CCCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEE
Confidence            44456799999999999999999997655445555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.43  E-value=2.4e-12  Score=79.70  Aligned_cols=82  Identities=27%  Similarity=0.452  Sum_probs=57.1

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc---CCCe
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN---DANT   99 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   99 (238)
                      |+++.|.|.+.+                          .|++.+.|++++..+..        ...++.+...   ....
T Consensus         1 g~~~~l~C~~~g--------------------------~p~~~i~W~k~~~~i~~--------~~~r~~~~~~~~~~~~~   46 (88)
T cd05735           1 GQKKEMSCTAHG--------------------------EKPIIVRWEKEDRIINP--------EMSRYLVSTKEVGDEVI   46 (88)
T ss_pred             CCeEEEEEEEEC--------------------------CCCCEEEEeeCCEECCC--------CCCcEEEEEecCCCcEE
Confidence            789999999963                          45778999998754321        1123333211   1122


Q ss_pred             EEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD  138 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~  138 (238)
                      .+|.|.++..+|+|.|+|.+.|. +.....+.|.|..+|.
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~   86 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD   86 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence            48999999999999999999886 4456667788876654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=9e-13  Score=82.47  Aligned_cols=81  Identities=21%  Similarity=0.354  Sum_probs=58.6

Q ss_pred             eeecCCCcEEEEEEEcc-----ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG-----YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+.+|+.+.|.|.+.+     .|.+.+.|++++........   . .......++.|.|..+..+|+|.|+|.+.|..|
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~---~-~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE---E-RSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccc---c-cceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            45678999999999988     68889999995533211110   0 111222456899999999999999999999998


Q ss_pred             CCccceEEEEE
Q psy7941         223 PTVSKRLMLHV  233 (238)
Q Consensus       223 ~~~~~~~~l~V  233 (238)
                       ..+..+.|.|
T Consensus        85 -~~~~~~~L~v   94 (94)
T cd05756          85 -CMKVSISLTV   94 (94)
T ss_pred             -cEEEEEEEEC
Confidence             4466666654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.42  E-value=7e-12  Score=78.36  Aligned_cols=77  Identities=23%  Similarity=0.398  Sum_probs=55.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ...|..+.+..|+++.|.|.+.+.                          | +.+.|++.++.....        ..++.
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~--------------------------p-~~i~W~~~~~~~~~~--------~~~~~   48 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGE--------------------------P-KDISWFSPNGEKLVT--------QQQIS   48 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEee--------------------------C-CeEEEECCCCCEecc--------CCCEE
Confidence            345677889999999999999642                          2 369999855433221        22333


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .........+|+|.+++.+|+|.|+|.+.|..
T Consensus        49 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977          49 VVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             EEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            33333445599999999999999999998863

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.41  E-value=1.4e-12  Score=78.58  Aligned_cols=72  Identities=28%  Similarity=0.513  Sum_probs=50.1

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee----cCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT----RSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|.++|++ ++..+....   .........++.|.|..+.    .+|.|.|+|.|.|..|...++.+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFFNVAK---DPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEccCcC---CCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4689999999999999999 554432111   1111222345678888764    2469999999999999776666654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.41  E-value=1.4e-12  Score=78.18  Aligned_cols=72  Identities=26%  Similarity=0.399  Sum_probs=50.2

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      +|+++.|.|.+.                          +.|.|.++|+|++..+..         +.++.....    .+
T Consensus         1 eG~~v~l~C~~~--------------------------g~P~p~i~W~k~g~~~~~---------~~~~~~~~~----~~   41 (74)
T cd05745           1 EGQTVDFLCEAQ--------------------------GYPQPVIAWTKGGSQLSV---------DRRHLVLSS----GT   41 (74)
T ss_pred             CCCeEEEEeECC--------------------------EecCCEEEEEECCEECCC---------CCCeEEccC----Ce
Confidence            589999999984                          456888999997664321         222222111    28


Q ss_pred             EEEcccCcccCeEEEEEEecCC-CcceeeEEE
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE  132 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~  132 (238)
                      |.|.+++.+|+|.|+|.+.|.. .....+.|.
T Consensus        42 L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745          42 LRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             EEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            9999999999999999998863 334444443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.41  E-value=4.1e-12  Score=78.98  Aligned_cols=78  Identities=22%  Similarity=0.440  Sum_probs=56.7

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ...+..+.+..|+++.|.|.+.+                          .|. .+.|+++++....        ...|+.
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G--------------------------~P~-~v~W~k~~g~~~~--------~~~r~~   48 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIG--------------------------EPE-SIDWYNPQGEKIV--------SSQRVV   48 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEE--------------------------eCC-eEEEEeCCCeEec--------CCCCEE
Confidence            45677888999999999999864                          334 6999986554322        134554


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT  125 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  125 (238)
                      +.. .....+|.|.++..+|+|.|+|.+.|..+.
T Consensus        49 ~~~-~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866          49 VQK-EGVRSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             EEe-CCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            432 223448999999999999999999886543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.41  E-value=1.9e-12  Score=78.03  Aligned_cols=75  Identities=31%  Similarity=0.523  Sum_probs=55.2

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +.|.|.+.|.|.|.+.|++ ++..+....   .........+..|.|.++..+|.|.|+|.+.|..|.. ..++.|.|..
T Consensus         1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~---~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLK-NGMDITPKL---SKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEE-CCEECCCCC---CccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEEc
Confidence            4689999999999999999 444432211   1111122233479999999999999999999999954 7888888863

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.41  E-value=1.4e-12  Score=78.60  Aligned_cols=72  Identities=24%  Similarity=0.503  Sum_probs=50.1

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC----CCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS----EMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|+++|++ ++..+....   .........++.|.|..+..+    |.|.|+|.|.|..|...++.+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            4789999999999999999 454432111   111222234567888777643    78999999999999766666654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.40  E-value=7.2e-12  Score=79.84  Aligned_cols=95  Identities=18%  Similarity=0.320  Sum_probs=59.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|...+..+.+.+|+++.|.|.+.                          +.|.|.+.|+|++..+......    ..
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~----~~   50 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAE--------------------------GRPTPTIQWLKNGQPLETDKDD----PR   50 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCC--------------------------cCCCCEEEEEECCEECccccCC----CC
Confidence            58888899999999999999999985                          3557789999987654321000    00


Q ss_pred             ccEEEEEcCCCeEEEE--EcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLN--IRSVRREDRGYYMCQVNTNPMT--KQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~--i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v  133 (238)
                      .+.... .......+.  ..+++.+|+|.|+|.+.|..+.  +..+.|.|
T Consensus        51 ~~~~~~-~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          51 SHRIVL-PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             cceEEe-cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            111111 111111222  2334789999999999886443  33444443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.40  E-value=9.5e-12  Score=76.46  Aligned_cols=67  Identities=22%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941          65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP  137 (238)
Q Consensus        65 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~  137 (238)
                      .+.|++++..+....      .+.++..........+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus        18 ~v~W~~~g~~i~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          18 TFTWSLDDFPIDLDK------PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EEEEEECCeEccccC------CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            689999865542111      1223322111122348999999999999999999886 445667778887654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.39  E-value=5.9e-12  Score=75.50  Aligned_cols=65  Identities=20%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLE  132 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~  132 (238)
                      +.|.|.+.|+|++..+..        ...++.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.
T Consensus         9 G~P~P~v~W~k~~~~i~~--------~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           9 AIPPPQIFWKKNNEMLTY--------NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             ecCCCeEEEEECCEECCC--------CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            466888999998765421        1234555444344558999999999999999999886 3344444444

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.39  E-value=1.2e-12  Score=79.26  Aligned_cols=68  Identities=28%  Similarity=0.425  Sum_probs=49.2

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      |+.+.|.|.+.|.|.|.+.|++++ ..+....   ............|.|.++..+|.|.|+|.|.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~-~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNW-GHVPDSA---RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECC-eECCCCC---CEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            678999999999999999999944 3322110   0000111123579999999999999999999999943

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=8.2e-12  Score=77.25  Aligned_cols=74  Identities=23%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .|..+.+.+|+++.|.|.+.                         .+.|.+.+.|++++..+...        ..++...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~-------------------------~g~p~p~i~W~k~g~~~~~~--------~~~~~~~   48 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPP-------------------------RGHPEPTVSWRKDGQPLNLD--------NERVRIV   48 (86)
T ss_pred             CCccEEEeCCCCEEEEEECC-------------------------CCCCCCEEEEEECCEECCCC--------CCCEEEc
Confidence            46778899999999999873                         23457789999976553321        2233332


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .    ..+|.|.+++.+|+|.|+|.+.|...
T Consensus        49 ~----~~~L~I~~~~~~D~G~Y~C~a~N~~G   75 (86)
T cd05724          49 D----DGNLLIAEARKSDEGTYKCVATNMVG   75 (86)
T ss_pred             c----CCEEEEeECCcccCEEEEEEEEeccC
Confidence            2    12899999999999999999988643

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.37  E-value=7.5e-12  Score=78.52  Aligned_cols=78  Identities=18%  Similarity=0.367  Sum_probs=55.7

Q ss_pred             cceeccCceeEEE---ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           9 PDFLYPLENVTIA---QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         9 p~~~~~~~~~~v~---~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      |.|+..|.++.+.   .|+++.|.|.+.                          +.|.|.++|+|++..+...       
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~i~W~k~g~~l~~~-------   48 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEAR--------------------------GNPVPTYRWLRNGTEIDTE-------   48 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEee--------------------------ecCCCEEEEEECCeECccC-------
Confidence            7788888887665   468999999985                          4568889999987654211       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM  124 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~  124 (238)
                      .+.++.....     +|.|.++. .+|+|.|+|.+.|...
T Consensus        49 ~~~~~~~~~g-----~L~i~~~~~~~D~G~Y~C~A~N~~G   83 (94)
T cd05848          49 SDYRYSLIDG-----NLIISNPSEVKDSGRYQCLATNSIG   83 (94)
T ss_pred             CCceEEeeCC-----eEEEccCCccCcCEEEEEEEEcCCC
Confidence            1122322221     78898875 6999999999988644

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.37  E-value=5.2e-12  Score=76.08  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=50.9

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.++|++++..+....      ...++....     .+|
T Consensus         1 G~~v~l~C~~~--------------------------G~P~p~i~W~k~g~~i~~~~------~~~~~~~~~-----~~L   43 (76)
T cd05867           1 GETARLDCQVE--------------------------GIPTPNITWSINGAPIEGTD------PDPRRHVSS-----GAL   43 (76)
T ss_pred             CCeEEEEEEee--------------------------EeCCCeEEEEECCEECCCCC------CCceEEeeC-----CEE
Confidence            78899999985                          35677899999776432211      112333221     289


Q ss_pred             EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        44 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          44 ILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             EECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            99999999999999999885 44444555554

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.37  E-value=2e-12  Score=77.78  Aligned_cols=72  Identities=22%  Similarity=0.452  Sum_probs=49.2

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      +.|.|.+.| .|.|.+.|++ ++..+...................|.|..+..+|.|.|+|.|.|..|.. ..++
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND-TVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEc-CCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce-eEEE
Confidence            468999999 9999999999 5554432211100000011223579999999999999999999999943 4443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.37  E-value=1.7e-11  Score=76.31  Aligned_cols=77  Identities=22%  Similarity=0.427  Sum_probs=55.1

Q ss_pred             ccee--ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           9 PDFL--YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         9 p~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      |.+.  ..+..+.+.+|+++.|.|.+..                          . .|.+.|++++..+.          
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g--------------------------~-~p~i~W~kng~~l~----------   44 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEG--------------------------Q-ATYIWWVNNGSLLV----------   44 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCC--------------------------C-CCEEEEEECCEECC----------
Confidence            4453  3455788999999999999964                          3 45699999875532          


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT  125 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  125 (238)
                      ..++.+...   ..+|.|.+++.+|+|.|.|.+.|....
T Consensus        45 ~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T cd05740          45 PPRLQLSND---NRTLTFNNVTRSDTGHYQCEASNEVSN   80 (91)
T ss_pred             CCCEEEeCC---CCEEEECcCChhhCEEEEEEEEcCCCC
Confidence            123322211   128999999999999999999886543

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.36  E-value=3.4e-12  Score=78.31  Aligned_cols=79  Identities=18%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCee---eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccce
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKE---IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKR  228 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~  228 (238)
                      |+++.|.|.+.+.|.+.+.|++.+...   +.....  . ..........|.|.+++.+|+|.|+|.|.|..+ ...+++
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s   77 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE--V-KVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK   77 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE--E-ecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence            678999999999999999999744321   110000  0 000112345799999999999999999999765 344788


Q ss_pred             EEEEEE
Q psy7941         229 LMLHVH  234 (238)
Q Consensus       229 ~~l~V~  234 (238)
                      +.|+|.
T Consensus        78 v~i~V~   83 (84)
T cd05861          78 VNITVH   83 (84)
T ss_pred             EEEEEe
Confidence            888875

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.36  E-value=1.3e-11  Score=78.20  Aligned_cols=88  Identities=14%  Similarity=0.210  Sum_probs=57.4

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ...+..|+.+.|.|.+.                          +.|+|.+.|+|++..+...... ........   ...
T Consensus        12 ~~~~~~~~~~~l~~~v~--------------------------g~P~P~v~W~kdg~~l~~~~~~-~~~~~~~~---~~~   61 (101)
T cd05859          12 LEFANLHEVKEFVVEVE--------------------------AYPPPQIRWLKDNRTLIENLTE-ITTSEHNV---QET   61 (101)
T ss_pred             eEEEecCCcEEEEEEEE--------------------------EeCCCceEEEECCEECcCCcce-EEeccccc---cce
Confidence            66788999999999996                          3567789999988765422111 11000000   000


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ....+|.|.+++.+|+|.|+|.+.|... .+..+.|.|.
T Consensus        62 ~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          62 RYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             eeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            1123899999999999999999988643 3444555553

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.35  E-value=1.2e-11  Score=77.42  Aligned_cols=85  Identities=18%  Similarity=0.352  Sum_probs=56.8

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCC-CCcceEEE----eeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP-SSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      .+..+..|+++.|.|.+.+.|.|.+.|++++...+....... ...+....    ....|.|.++..+|.|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            456788999999999999999999999995543222111100 00111111    2358999999999999999999883


Q ss_pred             CCCCccceEEEE
Q psy7941         221 VPPTVSKRLMLH  232 (238)
Q Consensus       221 ~g~~~~~~~~l~  232 (238)
                      .  ...+..+|.
T Consensus        85 ~--~~~~~~~~~   94 (95)
T cd05882          85 P--VRTAKATVT   94 (95)
T ss_pred             c--cccEEEEEE
Confidence            3  324444444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.35  E-value=1.4e-11  Score=78.04  Aligned_cols=80  Identities=19%  Similarity=0.330  Sum_probs=56.9

Q ss_pred             CceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEE-------eeceEEEEEeecCC-CeEEEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKVTRSE-MGAYQCI  216 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~y~C~  216 (238)
                      ....+.+|+.+.|.|.+.|.|.| .+.|++ ++..+.....    ......       ..+.|.|.++..+| .|.|+|.
T Consensus         9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~----~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~   83 (98)
T cd05758           9 ATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELESGSS----GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT   83 (98)
T ss_pred             CcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccCCCC----CCEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence            34567889999999999999999 699999 5544432110    111111       11379999999855 8999999


Q ss_pred             eeeCCCCCccceEEE
Q psy7941         217 AANGVPPTVSKRLML  231 (238)
Q Consensus       217 ~~n~~g~~~~~~~~l  231 (238)
                      |.|..|.. ...+.|
T Consensus        84 A~N~~G~~-~~~~~L   97 (98)
T cd05758          84 AWNSFGSG-TAIISL   97 (98)
T ss_pred             EEcCCCcc-cEEEEe
Confidence            99999954 555554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.35  E-value=1.3e-11  Score=76.09  Aligned_cols=81  Identities=19%  Similarity=0.354  Sum_probs=53.6

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      .+.+.+|+++.|.|.+.                          +.|.|.++|+|++..+......      ..+..   .
T Consensus         3 ~~~v~~G~~~~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~------~~~~~---~   47 (85)
T cd05857           3 LHAVPAANTVKFRCPAA--------------------------GNPTPTMRWLKNGKEFKQEHRI------GGYKV---R   47 (85)
T ss_pred             cEEcCCCCEEEEEEEcC--------------------------CCCCCEEEEEECCEECCCCCce------eeeEE---e
Confidence            34578899999999985                          3457789999987654321100      01111   1


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE  132 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~  132 (238)
                      ...++|.|.+++.+|+|.|+|.+.|..+ ....+.|.
T Consensus        48 ~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857          48 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            2234899999999999999999988633 33343343

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.35  E-value=7.8e-12  Score=75.20  Aligned_cols=74  Identities=19%  Similarity=0.363  Sum_probs=50.6

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+.+.|.|.+.                          +.|.|.++|++++..+.....      ........     ..|
T Consensus         1 g~~~~l~C~a~--------------------------G~P~P~i~W~k~g~~i~~~~~------~~~~~~~~-----~~l   43 (76)
T cd05868           1 GEDGTLICRAN--------------------------GNPKPSISWLTNGVPIEIAPT------DPSRKVDG-----DTI   43 (76)
T ss_pred             CCCEEEEEEee--------------------------EeCCCeEEEEECCEEccccCC------CceEEecC-----CEE
Confidence            67899999985                          456888999997654321100      11111111     178


Q ss_pred             EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        44 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          44 IFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             EECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            89999999999999999886 44555666665

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.35  E-value=1.5e-11  Score=76.82  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=54.8

Q ss_pred             ccceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           8 EPDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      .|.|...|..+.+.++   +++.|.|.+.                          +.|.|.++|+|++..+..       
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~--------------------------G~P~P~i~W~k~~~~i~~-------   47 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRAR--------------------------ANPFPIYKWRKNNLDIDL-------   47 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCc--------------------------cCCCCEEEEEECCEEccC-------
Confidence            3677777777665544   4799999985                          456889999998765321       


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM  124 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~  124 (238)
                       ...++.+..     ..|.|.++. .+|+|.|.|.+.|...
T Consensus        48 -~~~~~~~~~-----g~L~I~~~~~~~D~G~Y~C~A~N~~G   82 (93)
T cd05849          48 -TNDRYSMVG-----GNLVINNPDKYKDAGRYVCIVSNIYG   82 (93)
T ss_pred             -CCCeEEEEC-----CEEEECcCCcCCCCEEEEEEEEeCcc
Confidence             122333322     289999885 6899999999988644

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=1.4e-11  Score=76.79  Aligned_cols=82  Identities=29%  Similarity=0.487  Sum_probs=56.0

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.+.|++++........ .......++.+...    .+|
T Consensus         1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~~----~~L   49 (90)
T cd05726           1 GRTVTFQCEAT--------------------------GNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQT----GDL   49 (90)
T ss_pred             CCEEEEEEECC--------------------------ccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECCC----CeE
Confidence            68899999874                          456778999998654322111 01112345555332    279


Q ss_pred             EEcccCcccCeEEEEEEecC-CCcceeeEEEEEc
Q psy7941         103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVI  135 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  135 (238)
                      .|.+++.+|+|.|+|.+.|. +.....+.|.|..
T Consensus        50 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   83 (90)
T cd05726          50 TITNVQRSDVGYYICQTLNVAGSILTKAYLEVTD   83 (90)
T ss_pred             EEeeCChhhCEEEEEEEEcCCCceEEEEEEEEee
Confidence            99999999999999999885 4455667777764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.34  E-value=5.8e-12  Score=77.48  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCcEEEEEEEccc--cCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941         153 GGSAKLVCKAKGY--PTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       153 g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      |+.+.|.|.+.+.  |.+.+.|.+++.......... ...........+.|.|.+++.+|+|.|+|.|.|..|. .+.+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence            6789999999998  888999987443221110000 0000011123457999999999999999999999984 36677


Q ss_pred             EEEE
Q psy7941         230 MLHV  233 (238)
Q Consensus       230 ~l~V  233 (238)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            6665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.33  E-value=2.1e-11  Score=73.92  Aligned_cols=67  Identities=19%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      |+...+.+|+++.|.|.+...                           .+.+.|+|++..+.         .+.++.+..
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~---------------------------~~~v~W~k~g~~l~---------~~~~~~~~~   44 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD---------------------------VQSINWTKDGVQLG---------ENNRTRITG   44 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC---------------------------CceEEEeeCCcCCC---------CCceEEEeC
Confidence            456778999999999998642                           34699999876542         123444432


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .     +|.|.+++.+|+|.|+|.+.+.
T Consensus        45 ~-----~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973          45 E-----EVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             C-----EEEECCCChhhCEEEEEEEeCC
Confidence            2     8999999999999999999765

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.33  E-value=1.1e-11  Score=77.52  Aligned_cols=71  Identities=28%  Similarity=0.597  Sum_probs=51.6

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec-CCCeEEEEEeeeCCCCCccce
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-SEMGAYQCIAANGVPPTVSKR  228 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~n~~g~~~~~~  228 (238)
                      .+..+.|.|.+.|.|.|.++|++ ++..+....    ... ....++.|.|.++.. +|.|.|+|.|.|..|...++.
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k-~~~~l~~~~----~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~   89 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLM-NGTEIDDEP----DSR-YSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE   89 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEE-CCEECCCCC----CCC-EEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence            34679999999999999999999 554442111    111 233456788988774 899999999999999654443

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.33  E-value=2.8e-11  Score=75.95  Aligned_cols=79  Identities=20%  Similarity=0.329  Sum_probs=56.0

Q ss_pred             cceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           9 PDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         9 p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      |.|...|..+.+.+|   +++.|.|.+.                          ++|.+.++|++++..+...       
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~--------------------------g~P~p~i~W~~~g~~l~~~-------   48 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRAR--------------------------ASPPATYRWKMNGTEIKFA-------   48 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEce--------------------------eCCCCEEEEEECCEECccC-------
Confidence            677888888877665   5799999985                          4567889999987654211       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCCc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPMT  125 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~  125 (238)
                      .+.++.+...     +|.|.++. ..|+|.|.|.+.|..+.
T Consensus        49 ~~~~~~~~~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~   84 (94)
T cd05850          49 PESRYTLVAG-----NLVINNPQKARDAGSYQCLAINRCGT   84 (94)
T ss_pred             CCceEEEECC-----eEEEccCCccCcCEEEEEEEEcCcCc
Confidence            1223333321     78888865 59999999999886443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.32  E-value=1.1e-11  Score=74.68  Aligned_cols=77  Identities=23%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.+...|+...+.+|++++|+|.+.+...                         ...+.|+|++..+..         . 
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~-------------------------~~~~~W~kng~~l~~---------~-   45 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPE-------------------------QNSTQWYHNGKLLET---------T-   45 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCC-------------------------CccEEEEECCEEeec---------c-
Confidence            45677888899999999999999864211                         235999998765310         0 


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEE
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE  132 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~  132 (238)
                                ..+|.|.++ .+|+|.|+|.+.+. ..+..+.|+
T Consensus        46 ----------~~~l~i~~~-~~dsG~Y~C~a~~~-~~S~~v~l~   77 (78)
T cd05752          46 ----------TNSYRIRAA-NNDSGEYRCQTQGS-SLSDPVHLE   77 (78)
T ss_pred             ----------CCeEEEeec-ccCCEEeEEECCCC-cCCCCEEEe
Confidence                      118899999 99999999999654 334444443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.32  E-value=4e-11  Score=73.89  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941          65 KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP  137 (238)
Q Consensus        65 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~  137 (238)
                      .+.|++++..+....      .+.++..........+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus        18 ~~~W~~~g~~i~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          18 TFTWSFNGVPIDFDK------DGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             EEEEEECCeEeeccC------CCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            579999766543211      0111211111122338999999999999999999875 445667778887664

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.32  E-value=1.1e-11  Score=72.11  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=40.3

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV  134 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  134 (238)
                      +.|.|.++|+|++..+..         +         .....|.|.++..+|+|.|+|.+.|. +.......+++.
T Consensus         9 g~P~P~v~W~kdg~~l~~---------~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           9 AYPPPEFQWYKDGKLISG---------K---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             EeCCCEEEEEECCEECcc---------c---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            456888999998765421         0         01128999999999999999999876 333445555543

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.32  E-value=1.7e-11  Score=76.31  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=60.2

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ..+.+..|+.+.|.|.+.+ |.+.+.|++++. .+.....   ...........|.|.++..+|+|.|+|.|.+..+...
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~-~~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~   78 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGG-PLQRKEE---PEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQT   78 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCc-ccccccC---cCceEEEcCCCEEEccCCHHHCEEEEEEEecCcccee
Confidence            3456788999999999977 888999999543 3221110   0111222334699999999999999999998876566


Q ss_pred             cceEEEEEE
Q psy7941         226 SKRLMLHVH  234 (238)
Q Consensus       226 ~~~~~l~V~  234 (238)
                      ..++.|.|.
T Consensus        79 ~~~~~l~V~   87 (89)
T cd04979          79 LATYSLNVL   87 (89)
T ss_pred             EeEEEEEEe
Confidence            778888775

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.32  E-value=1.7e-11  Score=73.26  Aligned_cols=62  Identities=24%  Similarity=0.481  Sum_probs=46.1

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.+.+.|++++..+.         ...++.+....    +|
T Consensus         1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~~~~~~---------~~~~~~~~~~~----~L   41 (73)
T cd04969           1 GGDVIIECKPK--------------------------AAPKPTISWSKGTELLT---------NSSRICIWPDG----SL   41 (73)
T ss_pred             CCeEEEEEeee--------------------------EcCCCEEEEEECCEEcc---------cCCCEEECCCC----eE
Confidence            67899999985                          34577899999876532         23344433222    79


Q ss_pred             EEcccCcccCeEEEEEEecCC
Q psy7941         103 NIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.+++.+|+|.|+|.+.|..
T Consensus        42 ~i~~v~~~D~G~Y~C~a~N~~   62 (73)
T cd04969          42 EILNVTKSDEGKYTCFAENFF   62 (73)
T ss_pred             EEccCChhHCEEEEEEEECCC
Confidence            999999999999999998863

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.32  E-value=4.4e-11  Score=77.13  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=61.9

Q ss_pred             ccceeccCceeEE-E---ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           8 EPDFLYPLENVTI-A---QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         8 ~p~~~~~~~~~~v-~---~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      +|.|..++....+ .   .|.++.|.|.+.                          +.|.+.+.|++++..+...     
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--------------------------G~P~p~i~W~k~g~~l~~~-----   52 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQ--------------------------GVPRVQFRWAKNGVPLDLG-----   52 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECc--------------------------ccCCCEEEEEECCEECCCC-----
Confidence            6777766663332 2   457899999985                          3557789999977654211     


Q ss_pred             eecCccEEEEE--c-CCCeEEEEEcccC-cccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941          84 ITNNARLSVTH--N-DANTWTLNIRSVR-REDRGYYMCQVNTN-PMTKQMAFLEVVIPP  137 (238)
Q Consensus        84 ~~~~~~~~~~~--~-~~~~~~L~i~~~~-~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~  137 (238)
                         +.++....  . .....+|.|.++. .+|.|.|+|.+.|. +.....+.|.+..+|
T Consensus        53 ---~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          53 ---NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             ---CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence               11222111  0 1113489999997 59999999999886 444556667766544

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.31  E-value=2.2e-11  Score=72.30  Aligned_cols=59  Identities=17%  Similarity=0.408  Sum_probs=39.6

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFL  131 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l  131 (238)
                      +.|.|.++|+|++..+..         ..++.+....    .|.|.+++.+|+|.|+|.+.|..+ ....+.|
T Consensus        10 G~P~p~v~W~k~g~~~~~---------~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   69 (71)
T cd05723          10 GKPTPTVKWVKNGDMVIP---------SDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQL   69 (71)
T ss_pred             EeCCCEEEEEECCeECCC---------CCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            456788999998765421         2334333322    688889999999999999988643 3333344

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.30  E-value=3.3e-11  Score=72.94  Aligned_cols=65  Identities=29%  Similarity=0.496  Sum_probs=47.7

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.+.|++++..+.         ...++.+... .....|
T Consensus         1 G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~---------~~~~~~~~~~-~~~~~L   44 (78)
T cd05743           1 GETVEFTCVAT--------------------------GVPTPIINWRLNWGHVP---------DSARVSITSE-GGYGTL   44 (78)
T ss_pred             CCEEEEEEEEE--------------------------EecCCEEEEEECCeECC---------CCCCEEEEEC-CCEEEE
Confidence            68899999985                          34577899999765432         2234444332 234589


Q ss_pred             EEcccCcccCeEEEEEEecCC
Q psy7941         103 NIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.+++.+|+|.|+|.+.|..
T Consensus        45 ~I~~v~~~D~G~Y~C~a~N~~   65 (78)
T cd05743          45 TIRDVKESDQGAYTCEAINTR   65 (78)
T ss_pred             EECCCChHHCEEEEEEEEecC
Confidence            999999999999999998753

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=1.4e-11  Score=76.75  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=27.6

Q ss_pred             EEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             eEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            8999999999999999999885 44556667766

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.29  E-value=3.4e-11  Score=72.53  Aligned_cols=70  Identities=17%  Similarity=0.382  Sum_probs=53.8

Q ss_pred             CceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ....+.+|+.+.|.|.+.+.|.+ .+.|++ ++..+.             ..++.|.|.++ .+|+|.|+|.|.|.   .
T Consensus         8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~-------------~~~~~l~i~~~-~~dsG~Y~C~a~~~---~   69 (78)
T cd05752           8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLE-------------TTTNSYRIRAA-NNDSGEYRCQTQGS---S   69 (78)
T ss_pred             CCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEee-------------ccCCeEEEeec-ccCCEEeEEECCCC---c
Confidence            34567899999999999987754 799999 554431             13457889999 99999999999875   3


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .+..++|+|
T Consensus        70 ~S~~v~l~V   78 (78)
T cd05752          70 LSDPVHLEV   78 (78)
T ss_pred             CCCCEEEeC
Confidence            467777665

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.29  E-value=3.5e-11  Score=74.98  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=28.2

Q ss_pred             EEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .+|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            48999999999999999999875 44566667766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.29  E-value=2.7e-11  Score=73.05  Aligned_cols=74  Identities=18%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.+.|++++..+......      .+..     .....|
T Consensus         1 G~~~~l~C~~~--------------------------g~P~p~i~W~~~g~~~~~~~~~------~~~~-----~~~~~L   43 (76)
T cd04978           1 GETGRLDCEAE--------------------------GIPQPTITWRLNGVPIEELPPD------PRRR-----VDGGTL   43 (76)
T ss_pred             CCeEEEEEEce--------------------------eeCCCEEEEEECCEECCCCCCc------ceEE-----ccCCEE
Confidence            68899999884                          4567889999977654321100      0111     111289


Q ss_pred             EEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        44 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          44 ILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             EECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            99999999999999999885 33444555554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.29  E-value=6.6e-11  Score=74.54  Aligned_cols=78  Identities=23%  Similarity=0.444  Sum_probs=53.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      |...|....+.+|+++.|.|.+.                          +.|.|.+.|+|++..+....       +.+.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~--------------------------g~P~p~i~W~k~g~~l~~~~-------~~~~   48 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAE--------------------------GEPPPKIEWKKDGVLLNLVS-------DERR   48 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecc--------------------------cCCCCEEEEEECCeECcccc-------Ccce
Confidence            55677888889999999999985                          34578899999776543211       1112


Q ss_pred             EEEEcCCCeEEEEEccc-----CcccCeEEEEEEecC-CCc
Q psy7941          91 SVTHNDANTWTLNIRSV-----RREDRGYYMCQVNTN-PMT  125 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~-~~~  125 (238)
                      ......    +|.|.++     +.+|.|.|.|.+.|. .+.
T Consensus        49 ~~~~~~----~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722          49 QQLPNG----SLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             EEccCC----eEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            211111    4555554     689999999999887 443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.28  E-value=1.9e-11  Score=74.77  Aligned_cols=73  Identities=29%  Similarity=0.376  Sum_probs=58.1

Q ss_pred             eecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         149 MVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      .+.+|+.++|.|.+.+ .+.+.+.|+++ +..+..           ......|.|..+..+|+|.|+|.+.+..|+..++
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~-----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~   77 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKY-----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSE   77 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccc-----------cCCCceEEECccCHHHCEEEEEEEEeCCceecCC
Confidence            5788999999999854 66779999994 433321           1124579999999999999999999999987788


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      .+.|+|
T Consensus        78 ~~~i~~   83 (83)
T cd05753          78 PVSITV   83 (83)
T ss_pred             CEEEEC
Confidence            888775

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.28  E-value=5e-11  Score=74.13  Aligned_cols=83  Identities=25%  Similarity=0.394  Sum_probs=56.1

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ++..+.+.+|+++.|+|.+..                           |.+.+.|++++........     ...++...
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~---------------------------p~~~i~W~k~~~~~~~~~~-----~~~~~~~~   49 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS---------------------------NLASVVWLFQGGPLQRKEE-----PEERLLVT   49 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC---------------------------CCceEEEEECCcccccccC-----cCceEEEc
Confidence            456788999999999999742                           3557999998765322110     11233332


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      ..     .|.|.+++.+|+|.|.|.+.+.......+.+.|
T Consensus        50 ~~-----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l   84 (89)
T cd04979          50 ED-----GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL   84 (89)
T ss_pred             CC-----CEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence            21     699999999999999999976654444444443

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.28  E-value=1.2e-10  Score=73.84  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+ ..+..+.+..|+++.|.|.+.                          +.|.| .+.|++++..+...       .
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~--------------------------g~P~P~~v~W~~~~~~i~~~-------~   47 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIF--------------------------STPPPDRIVWTWKENELESG-------S   47 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEc--------------------------ccCCCCEeEEEECCEEccCC-------C
Confidence            3444 556778899999999999995                          34566 59999977654221       1


Q ss_pred             CccEEEEEcC---CCeEEEEEcccCccc-CeEEEEEEecCCC
Q psy7941          87 NARLSVTHND---ANTWTLNIRSVRRED-RGYYMCQVNTNPM  124 (238)
Q Consensus        87 ~~~~~~~~~~---~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~  124 (238)
                      ..++.+....   ....+|.|.++..+| .|.|.|.+.|..+
T Consensus        48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            2344443321   123489999999955 8999999988643

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.28  E-value=6.8e-11  Score=74.20  Aligned_cols=87  Identities=18%  Similarity=0.363  Sum_probs=58.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      ...+.+.+|+++.|.|.+.+.|.+.+.|++.+...+...+.. ....+...    .....|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            345778999999999999999999999997443322211110 01112111    1234799999999999999999998


Q ss_pred             CCCCCccceEEEEE
Q psy7941         220 GVPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~~g~~~~~~~~l~V  233 (238)
                      ..+  .+....|.|
T Consensus        84 ~~~--~~~~~~l~v   95 (95)
T cd07701          84 MPV--KTSKAYLTV   95 (95)
T ss_pred             ecC--ccEEEEEEC
Confidence            543  255666554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.28  E-value=5.4e-11  Score=72.76  Aligned_cols=69  Identities=19%  Similarity=0.288  Sum_probs=51.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .|+...+..|+++.|.|.+..                           +.+++.|++++..+...        ..++.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~---------------------------~~~~i~W~~ng~~i~~~--------~~r~~~~   46 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS---------------------------NLARVVWKFDGKVLTPE--------SAKYLLY   46 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC---------------------------CCCeEEEEECCEECCCC--------CceEEEE
Confidence            567889999999999999742                           24579999987654321        1244333


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..     .|.|.+++.+|+|.|+|.+...
T Consensus        47 ~~-----~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          47 RD-----GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CC-----cEEEeCCCHHHCEEEEEEEEec
Confidence            22     7999999999999999999765

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.27  E-value=4.9e-11  Score=70.41  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=36.6

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      +.|.|.+.|+|+++...          ..++.....    .+|.|.+++.+|+|.|+|.+.|..
T Consensus         9 g~P~p~v~W~k~~~~~~----------~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~   58 (69)
T cd05725           9 GDPVPTVLWRKEDGELP----------KGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMV   58 (69)
T ss_pred             cCCCCEEEEEECCccCC----------CCcEEEeeC----CEEEECcCChhHCEEEEEEEEcCC
Confidence            45678899999865431          233333322    289999999999999999998863

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.27  E-value=1e-10  Score=70.11  Aligned_cols=55  Identities=20%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.+.|+|++..+.         ...++.+... .....|.|.+++.+|+|.|+|.+.|..+
T Consensus        10 G~P~p~v~W~k~g~~l~---------~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05748          10 GRPTPTVTWSKDGKPLK---------LSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAG   64 (74)
T ss_pred             eeCCCeEEEEECCEEcC---------CCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCc
Confidence            46688899999876542         1233333322 2344899999999999999999988643

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.25  E-value=7.6e-11  Score=70.64  Aligned_cols=64  Identities=25%  Similarity=0.423  Sum_probs=44.9

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.+.|++.++.....        ..++.....    .+|
T Consensus         1 G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~--------~~~~~~~~~----~~L   42 (74)
T cd05764           1 GQRATLRCKAR--------------------------GDPEPAIHWISPDGKLISN--------SSRTLVYDN----GTL   42 (74)
T ss_pred             CCeEEEEEEcc--------------------------CcCCCEEEEEeCCCEEecC--------CCeEEEecC----CEE
Confidence            68899999984                          3457789999865543321        122222111    179


Q ss_pred             EEcccCcccCeEEEEEEecCCC
Q psy7941         103 NIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.++..+|.|.|+|.+.|...
T Consensus        43 ~i~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05764          43 DILITTVKDTGSFTCIASNAAG   64 (74)
T ss_pred             EEEECChhhCEEEEEEEECCCC
Confidence            9999999999999999988643

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.25  E-value=5.9e-11  Score=71.57  Aligned_cols=54  Identities=22%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.++|+|++..+...        ..++.+...   ..+|.|.+++.+|+|.|.|.+.|..+
T Consensus         9 g~P~p~v~W~k~g~~l~~~--------~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G   62 (77)
T cd05760           9 GHPRPTYQWFRDGTPLSDG--------QGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNAFG   62 (77)
T ss_pred             ecCCCcEEEEECCEECCCC--------CccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeCCC
Confidence            4567889999987653211        122222211   12899999999999999999988643

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.24  E-value=4.3e-11  Score=73.27  Aligned_cols=69  Identities=20%  Similarity=0.495  Sum_probs=48.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      +.+..|+++.|.|.+.                          +.|.|.+.|++++..+.....         .   ....
T Consensus         4 ~~~~~G~~v~L~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~---------~---~~~~   45 (82)
T cd05856           4 IARPVGSSVRLKCVAS--------------------------GNPRPDITWLKDNKPLTPTEI---------G---ESRK   45 (82)
T ss_pred             eeccCCCeEEEEEEee--------------------------EeCCCcEEEEECCcCCcCCcc---------c---eecC
Confidence            4567899999999985                          245677999998765422110         0   0111


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ...+|.|.+++.+|+|.|+|.+.|...
T Consensus        46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G   72 (82)
T cd05856          46 KKWTLSLKNLKPEDSGKYTCHVSNRAG   72 (82)
T ss_pred             ceEEEEEccCChhhCEEEEEEEEcCCc
Confidence            234899999999999999999987543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.24  E-value=6.4e-11  Score=74.08  Aligned_cols=77  Identities=19%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|+++.|.|.+.+...                     ...|.+.+.|||++.......     ..+.|+...  
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~---------------------~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~~~--   58 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYI---------------------AQSPGLNLTWYKSDGKTPIPT-----EERSRMHQQ--   58 (94)
T ss_pred             eEEEEecCCCeEEECCCCCccc---------------------ccCCCceEEEEEcCCCCcccc-----cccceeeec--
Confidence            4567889999999999853100                     003466799999875432110     012233221  


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                         ...|.|.+++.+|+|.|+|.+.|..
T Consensus        59 ---~~~L~I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756          59 ---KDLLWFLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             ---CCeEEEccCCcccCeEEEEEEcCCC
Confidence               1289999999999999999998754

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.24  E-value=6.5e-11  Score=70.16  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      +.|.|.+.|+|++..+...         .++...     ..+|.|.+++.+|+|.|+|.+.|... ......+.|
T Consensus         9 g~P~p~v~W~k~g~~l~~~---------~~~~~~-----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           9 AYPPPEIQWYKNGKLISEK---------NRTKKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             EeCCCEEEEEECCEECCCC---------CEEEcC-----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4567889999987654321         122211     12899999999999999999988543 334444444

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.24  E-value=6.7e-11  Score=70.17  Aligned_cols=52  Identities=23%  Similarity=0.334  Sum_probs=36.4

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.+.|+|++..+...          +....   ....+|.|.+++.+|+|.|+|.+.|...
T Consensus         9 G~P~P~v~W~k~~~~~~~~----------~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05876           9 GLPTPEVHWDRIDGPLSPN----------RTKKL---NNNKTLQLDNVLESDDGEYVCTAENSEG   60 (71)
T ss_pred             EecCCeEEEEECCcCCCCC----------ceeEE---cCCCEEEEcccCHHhCEEEEEEEEcCCC
Confidence            4668899999987653211          11111   1122899999999999999999988643

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.24  E-value=8.5e-11  Score=72.47  Aligned_cols=82  Identities=29%  Similarity=0.489  Sum_probs=57.5

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+..|+.+.|.|.+.+.|.+.+.|++ ++..+.......  ..........|.|..+..+|.|.|+|.+.|..|. .+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFKKEHRIG--GYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECcccCcee--EEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEE
Confidence            346679999999999999999999999 444332111000  0001112236889999999999999999999994 467


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            776654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.23  E-value=8.2e-11  Score=71.32  Aligned_cols=70  Identities=11%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      |...|+++.+.+|+++.|.|.+.                          +.|.| .+.|++++..+..           +
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~--------------------------G~P~P~~I~W~k~g~~l~~-----------~   43 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAV--------------------------GPPEPVEILWWQGGSPLGD-----------P   43 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEee--------------------------eecCCeEEEEEECCEECCC-----------C
Confidence            45678889999999999999985                          46678 6999998765421           0


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..     .....|.|.++  .|+|.|.|.+.|..+
T Consensus        44 ~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749          44 PA-----PSPSVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             CC-----CCCCEEEEccc--cCCeEEEEEEEeccC
Confidence            00     11127888877  478999999988644

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.22  E-value=3.2e-11  Score=72.63  Aligned_cols=71  Identities=23%  Similarity=0.493  Sum_probs=47.6

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      +.|.|.+.+ .|.+.+.|++ ++..+....... ......  ...+.|.|.++..+|+|.|+|.+.|..|.. +.++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPD-NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND-SVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEE-CCcccccCCCCC-ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce-eEEE
Confidence            478999864 7888999999 555443211110 001111  123579999999999999999999999943 4444

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.22  E-value=3e-10  Score=71.56  Aligned_cols=87  Identities=20%  Similarity=0.403  Sum_probs=57.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      ...+.+.+|+.+.|.|.+.+.+.+.+.|++.++..+...... ....+...    .....|.|.+++.+|+|.|+|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            455778999999999999888888999987443322211110 01111111    1234799999999999999999997


Q ss_pred             CCCCCccceEEEEE
Q psy7941         220 GVPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~~g~~~~~~~~l~V  233 (238)
                      ... . +.++.|.|
T Consensus        84 ~~~-~-~~~~~~~v   95 (95)
T cd05717          84 MPV-Q-TAKATVTV   95 (95)
T ss_pred             CCC-c-eEEEEEEC
Confidence            653 2 55555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.22  E-value=1.2e-10  Score=70.00  Aligned_cols=66  Identities=26%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .+.|.|.++|+|++.......      ...++.....   ...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus         8 ~G~P~P~v~W~k~~~~~~~~~------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           8 TGHPTPQIAWQKDGGTDFPAA------RERRMHVMPE---DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             ccccCCEEEEEeCCCccCCcc------cccceEEecC---CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            356788999999875422110      1223333221   127999999999999999999885 33444555554

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.22  E-value=1.1e-10  Score=72.64  Aligned_cols=79  Identities=20%  Similarity=0.434  Sum_probs=52.3

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-----ecCccEEE
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-----TNNARLSV   92 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~~~~~~   92 (238)
                      +.+.+|++++|+|.++.                          .+.+.+.|++++.+..........     ....|+..
T Consensus         2 v~~~~G~~VtL~C~~s~--------------------------~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~   55 (94)
T cd07690           2 VLGKKGDTAELPCTASQ--------------------------KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS   55 (94)
T ss_pred             eEeeCCCCEEEEEEeCC--------------------------CCCcEEEEEECCcEEccCcCCEEEEecccccCCCCce
Confidence            56889999999999863                          235679999765443221111111     12334443


Q ss_pred             EE--cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          93 TH--NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        93 ~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..  ...+.++|.|.+++.+|+|.|+|.+.+.
T Consensus        56 ~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~   87 (94)
T cd07690          56 RRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK   87 (94)
T ss_pred             ecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence            33  1345678999999999999999999653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.21  E-value=8.6e-11  Score=72.40  Aligned_cols=76  Identities=22%  Similarity=0.416  Sum_probs=56.5

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+..|+.++|.|.+.+ .|.+.+.|++++.. +...         ....++.|.|..+..+|+|.|+|.+.|..|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~~~---------~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   77 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSR---------AMDFNGILTIRNVQLSDAGTYVCTGSNMLDT   77 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc-CCCc---------ccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence            44567889999999999865 78889999995433 2110         1123457999999999999999999999984


Q ss_pred             CccceEEE
Q psy7941         224 TVSKRLML  231 (238)
Q Consensus       224 ~~~~~~~l  231 (238)
                      . ..++.|
T Consensus        78 ~-~~~~~l   84 (85)
T cd05754          78 D-EATATL   84 (85)
T ss_pred             E-eEEEEE
Confidence            3 554443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.21  E-value=1.4e-10  Score=72.55  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEEeecCC-CeEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTKVTRSE-MGAYQCIA  217 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d-~G~y~C~~  217 (238)
                      .....+.+|+.+.|.|.+.+.|.| .+.|.+. +..+....  .....+..     ...+.|.|.++...| .|.|.|.|
T Consensus         8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~-~~~i~~~~--~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a   84 (98)
T cd05898           8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWK-ENVLESGT--SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA   84 (98)
T ss_pred             CceEEEeCCCcEEEEEEEccCCCCcEEEEEEc-cccccCCC--CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence            344668899999999999888887 6899884 33332211  01111111     123579999998777 68999999


Q ss_pred             eeCCCCCccceEEE
Q psy7941         218 ANGVPPTVSKRLML  231 (238)
Q Consensus       218 ~n~~g~~~~~~~~l  231 (238)
                      .|..|.+ ...+.|
T Consensus        85 ~N~~G~d-~~~i~L   97 (98)
T cd05898          85 WNSFGSG-TAIIQL   97 (98)
T ss_pred             EeCCccc-eEEEEe
Confidence            9999955 666654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.21  E-value=1e-10  Score=68.80  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=40.2

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      +.|.|.+.|+|++..+..         +.++.  .    ...|.|.++..+|+|.|+|.+.|..+ ......+.+
T Consensus         9 G~P~P~v~W~k~g~~l~~---------~~~~~--~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           9 GYPPPEVKWYKNGQLIVL---------NHTFK--R----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EeCCCEEEEEECCEECCC---------CCEEc--c----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            467888999998766432         11111  1    12799999999999999999988643 344444444

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.21  E-value=5.3e-10  Score=68.53  Aligned_cols=68  Identities=21%  Similarity=0.374  Sum_probs=43.5

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|+|.+.+                          .|.+.+.|++.+.........     ..+... .......+|
T Consensus         1 Ge~~~l~C~~~~--------------------------~~~~~~~W~~~~~~~~~~~~~-----~~~~~~-~~~~~~s~L   48 (84)
T cd05861           1 GETITVNCIVQG--------------------------NEVVDFSWTYPGKDIGKGIPE-----VEEVKV-PATTLRSTL   48 (84)
T ss_pred             CCcEEEEEEEEC--------------------------CCccEEEEEECCccCCCCceE-----EEEEec-CCcEEEEEE
Confidence            789999999964                          345679999866432111000     000000 011123499


Q ss_pred             EEcccCcccCeEEEEEEecC
Q psy7941         103 NIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .|.+++.+|+|.|.|.+.+.
T Consensus        49 ~I~~~~~~DsG~Y~C~a~n~   68 (84)
T cd05861          49 TFPHATVEDSGTYECAAHES   68 (84)
T ss_pred             EECCCCcCCCEEEEEEEEEC
Confidence            99999999999999999764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.20  E-value=9.2e-11  Score=69.18  Aligned_cols=52  Identities=19%  Similarity=0.380  Sum_probs=37.0

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.+.|+|++..+.         ...++.+...    .+|.|.+++.+|+|.|+|.+.|..+
T Consensus         9 g~P~p~i~W~k~g~~~~---------~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G   60 (69)
T cd05746           9 GDPEPTITWNKDGVQVT---------ESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIG   60 (69)
T ss_pred             EeCCCEEEEEECCEECC---------CCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCC
Confidence            45678899999765432         1233333222    2899999999999999999987643

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.20  E-value=1.6e-10  Score=69.09  Aligned_cols=63  Identities=22%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV  133 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v  133 (238)
                      +.|.|.+.|+|++..+...       .+.++.....    .+|.|.+++.+|+|.|+|.+.|..+.  +..+.|.|
T Consensus         9 G~P~p~v~W~k~~~~~~~~-------~~~~~~~~~~----g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           9 GNPDPEITWFKDFLPVDTT-------SNGRIKQLRS----GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EecCCEEEEEECCEECccC-------CCCCEEEcCC----cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4568889999986543211       1234443222    27999999999999999999886543  34444444

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=1.6e-10  Score=71.89  Aligned_cols=67  Identities=22%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             eeecCCCcEEEEEEEcc-c----cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG-Y----PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+..|....|.|...+ .    |.|.+.|++ ++.++...      ... ...++.|.|.++..+|+|.|+|.+.|..+
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~~------~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGD------RKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCCC------ccE-EecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            34677899999998743 2    577999999 55554321      111 12566899999999999999999999887

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.19  E-value=1.1e-10  Score=72.52  Aligned_cols=72  Identities=22%  Similarity=0.422  Sum_probs=54.5

Q ss_pred             ceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         147 DMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...+.+|..+.|.|.. .|+|.+.+.|+++ +.+.....   .........++.|.+.++..+|+|.|+|.|+|...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~---d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPE---DGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-Cccccccc---CCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            3568889999999976 6799999999994 33321111   11233444467999999999999999999999875

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.19  E-value=2.7e-10  Score=69.97  Aligned_cols=82  Identities=20%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.+.                        ..|.+.+.|++++..........     .+...........+|
T Consensus         1 Ge~~~L~C~~~g~------------------------~~~~~~i~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~L   51 (84)
T cd05742           1 GETLVLNCTVLTE------------------------LNEGVDFQWTYPGKKRGRGKSMV-----TRQSLSEATELSSTL   51 (84)
T ss_pred             CCeEEEEEEEEeC------------------------CCccEEEEEecCCcccCCceEee-----cccccccceEEEEEE
Confidence            7899999999642                        12467899998765432111110     011101111123489


Q ss_pred             EEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      .|.+++.+|+|.|+|.+.+... ....+.+.|
T Consensus        52 ~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          52 TIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            9999999999999999987533 333444433

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.17  E-value=2.8e-10  Score=69.48  Aligned_cols=69  Identities=25%  Similarity=0.417  Sum_probs=43.9

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee-eeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV-LAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      |+++.|.|.+.                          +.|.|.+.|+|+..... ......  ....++...    ...+
T Consensus         1 G~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~~~~----~~~~   48 (81)
T cd05765           1 GETASFHCDVT--------------------------GRPPPEITWEKQVHGKENLIMRPN--HVRGNVVVT----NIGQ   48 (81)
T ss_pred             CCcEEEEeecc--------------------------ccCCCcEEEEecCCCCcceeecCC--cccCCEEEc----cccE
Confidence            78899999874                          45677899999742110 000000  001122221    1238


Q ss_pred             EEEcccCcccCeEEEEEEecCC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      |.|.+++.+|+|.|+|.+.|..
T Consensus        49 L~I~~~~~~D~G~Y~C~a~N~~   70 (81)
T cd05765          49 LVIYNAQPQDAGLYTCTARNSG   70 (81)
T ss_pred             EEEccCCcccCEEEEEEEecCC
Confidence            9999999999999999998853

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.16  E-value=2.7e-10  Score=66.97  Aligned_cols=60  Identities=18%  Similarity=0.362  Sum_probs=42.0

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+.                          +.|.|.++|+|++..+..         ..++..     ....|
T Consensus         1 G~~v~L~C~a~--------------------------G~P~P~v~W~k~g~~l~~---------~~~~~~-----~~~~L   40 (69)
T cd05739           1 GGSVNLTCVAV--------------------------GAPMPYVKWMKGGEELTK---------EDEMPV-----GRNVL   40 (69)
T ss_pred             CCeEEEEEEee--------------------------ecCCCEEEEEECCEECCC---------ccceec-----CccEE
Confidence            67899999985                          567889999998765321         112211     11278


Q ss_pred             EEcccCcccCeEEEEEEecCCC
Q psy7941         103 NIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+++  |+|.|+|.+.|...
T Consensus        41 ~i~~~~--d~G~Y~C~A~N~~G   60 (69)
T cd05739          41 ELTNIY--ESANYTCVAISSLG   60 (69)
T ss_pred             EEeccc--cCeeEEEEEEeCCC
Confidence            888874  79999999987643

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.16  E-value=6e-10  Score=66.72  Aligned_cols=67  Identities=18%  Similarity=0.302  Sum_probs=47.0

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +.|.|...+ .|.+.+.|++ ++..+............ ....+.|.+.....+|.+.|+|.|.|+++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k-~~~~l~~~~~~~~~~~~-~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYR-DRKELKGVISQQENGKT-VSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEE-CCEECCCCcccccCCce-EEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999855 8999999999 66655432211111222 2234478888888888889999999998753

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.15  E-value=2.5e-10  Score=69.85  Aligned_cols=69  Identities=22%  Similarity=0.458  Sum_probs=52.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....+..|+++.|.|.+.+ |.+.+.|++ ++.++....     .. ....++.|.|.++..+|+|.|+|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~-----~r-~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPES-----AK-YLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCC-----ce-EEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34567889999999999864 678999999 565553211     12 23445679999999999999999999764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.15  E-value=9.9e-10  Score=71.08  Aligned_cols=85  Identities=14%  Similarity=0.315  Sum_probs=58.8

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeeee-eEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIHE-HVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~~-~~~~~   86 (238)
                      ..++..+.+.+|+++.|.|.+....                          ...+.||+....  ..  ..... .....
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~--------------------------~~~v~W~k~~~~~~~~~l~~~~~~~~~~~   55 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTST--------------------------FYYLFWYRQYPGQGPQFLIYISSNGEEKE   55 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCC--------------------------ccEEEEEEECCCCCeEEEEEEecCCCccc
Confidence            3567788999999999999997432                          345999986422  11  11100 00124


Q ss_pred             CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .+|+.+... ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          56 KGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             CCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            567776543 347889999999999999999999654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.15  E-value=2.3e-10  Score=69.91  Aligned_cols=65  Identities=15%  Similarity=0.281  Sum_probs=46.8

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|++++|+|.+..                         +.+..++.|+|++..+..       .          
T Consensus         7 p~~~V~~G~~vtL~C~~~~-------------------------~~~~~~~~w~k~g~~~~~-------~----------   44 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWK-------------------------NKPVYKVTYYRDGKAKKY-------S----------   44 (83)
T ss_pred             CcceecCCCCEEEEeeCCC-------------------------CCcceEEEEEECCeEccc-------c----------
Confidence            3447889999999999742                         122446999997653210       0          


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                       .....|.|.+++.+|+|.|+|.+.+..
T Consensus        45 -~~~~~l~I~~~~~~dsG~Y~C~~~~~~   71 (83)
T cd05753          45 -HSNSNLSIPQATLSDSGSYHCSGIIGS   71 (83)
T ss_pred             -CCCceEEECccCHHHCEEEEEEEEeCC
Confidence             011289999999999999999997754

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.14  E-value=2.9e-10  Score=67.51  Aligned_cols=52  Identities=25%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.+.|++++..+..          .+....   ....+|.|.+++.+|+|.|+|.+.|...
T Consensus         9 g~P~p~v~W~k~~~~~~~----------~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05731           9 GLPTPEISWIKIGGELPA----------DRTKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLG   60 (71)
T ss_pred             EecCCeEEEEECCeECCC----------CceeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCc
Confidence            356788999998764321          111111   1122899999999999999999988643

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.14  E-value=3.9e-10  Score=69.86  Aligned_cols=72  Identities=24%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             CCceeecCCCcEEEEEE-EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      ...+.+.+|+.+.|.|. ..|+|.|.+.|+.++...+.      ...+.....++.|.|.++..+|+| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            35577899999999997 58999999999974433222      123444445679999999999999 89999999874

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.14  E-value=6.7e-10  Score=69.02  Aligned_cols=84  Identities=21%  Similarity=0.307  Sum_probs=56.3

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee-CCCCCcc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVS  226 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n-~~g~~~~  226 (238)
                      +...+|+.+.|.|.. +.|.|.+.|++.++..........  ........+.|.|.++..+|+|.|+|.+.+ ..+.. .
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~--~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~   81 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKT--EERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-L   81 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccc--cccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-E
Confidence            457789999999996 478899999984322111000000  111223445799999999999999999985 55533 5


Q ss_pred             ceEEEEEEe
Q psy7941         227 KRLMLHVHC  235 (238)
Q Consensus       227 ~~~~l~V~~  235 (238)
                      ..++|.|..
T Consensus        82 ~~~~l~v~~   90 (91)
T cd05871          82 AKYTLHVIE   90 (91)
T ss_pred             EEEEEEEec
Confidence            577787764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.13  E-value=7.6e-10  Score=68.11  Aligned_cols=81  Identities=26%  Similarity=0.382  Sum_probs=53.5

Q ss_pred             CCcEEEEEEEcccc--CCeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccce
Q psy7941         153 GGSAKLVCKAKGYP--TPKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR  228 (238)
Q Consensus       153 g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~  228 (238)
                      |+.+.|.|.+.+.+  ...+.|...+...........  ..........+.|.|.+++.+|+|.|+|.|.|..| ....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~-~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM-IAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce-Eeccc
Confidence            67899999998755  448899875543211110000  00000112345899999999999999999999888 44777


Q ss_pred             EEEEEE
Q psy7941         229 LMLHVH  234 (238)
Q Consensus       229 ~~l~V~  234 (238)
                      ..|.|+
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            777775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.13  E-value=8.2e-10  Score=66.31  Aligned_cols=57  Identities=11%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEE----EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLS----VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .++|.|.++|+|++..+..         +.++.    ..........|.|.++..+|+|.|+|.|.|..+
T Consensus         8 ~G~P~Pti~W~kng~~l~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G   68 (79)
T cd05855           8 KGNPKPTLQWFHEGAILNE---------SEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG   68 (79)
T ss_pred             eEeCCCceEEEECCEECCC---------CcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc
Confidence            4578999999998766432         11111    111112344899999999999999999988643

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.13  E-value=7.4e-10  Score=71.73  Aligned_cols=83  Identities=17%  Similarity=0.318  Sum_probs=57.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-e-E--
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-H-V--   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~-~--   83 (238)
                      ...|..+.+.+|++++|.|.+.. .                          ...+.|||....  +  +..... . .  
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~--------------------------~~~v~Wykq~~g~~~~~l~~~~~~~~~~~   54 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-G--------------------------HDNMYWYRQDPGKGLQLLFYSNGGSLNEE   54 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-C--------------------------CCEEEEEEECCCCCcEEEEEEcCCCceEe
Confidence            35677889999999999999864 2                          235999996431  1  111100 0 0  


Q ss_pred             -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                       ....+||.........++|.|.+++.+|+|.|+|.+..
T Consensus        55 ~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~   93 (110)
T cd05899          55 EGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSL   93 (110)
T ss_pred             cCccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeC
Confidence             11245777665444677999999999999999999854

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.12  E-value=7.3e-10  Score=67.20  Aligned_cols=60  Identities=23%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.|.+.|+++++...... .......+++.....    .+|.|.+++.+|+|.|.|.+.|..+
T Consensus         9 G~P~P~v~W~~~~~~~~~~~-~~~~~~~~r~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G   68 (79)
T cd05734           9 GYPPPTIVWKHSKGRGHPQH-THTCCLAGRIQLLSN----GSLLIKHVLEEDSGYYLCKVSNDVG   68 (79)
T ss_pred             EeCCCEEEEEECCCcccccc-ccccccCCCEEEecC----CeEEECcCCcccCEEEEEEEEeCCC
Confidence            45678899999754321110 000112344544322    3899999999999999999988643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.12  E-value=6.1e-10  Score=69.49  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=53.4

Q ss_pred             cceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           9 PDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         9 p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      |.|...+..+.+..+   .++.|.|.+.                          ++|.+.++|++++..+...       
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~--------------------------g~p~p~i~W~k~~~~l~~~-------   48 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRAR--------------------------GSPPPTYRWLMNGTEIDDE-------   48 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeee--------------------------EcCCCEEEEEECCEECCCC-------
Confidence            677777777765444   5799999985                          3457789999976543211       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCc-ccCeEEEEEEecCCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM  124 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~  124 (238)
                      ...++.....     .|.|.++.. +|+|.|+|.+.|...
T Consensus        49 ~~~~~~~~~~-----~L~i~~~~~~~d~G~Y~C~a~N~~G   83 (91)
T cd04967          49 PDSRYSLVGG-----NLVISNPSKAKDAGRYQCLASNIVG   83 (91)
T ss_pred             CCCCEEEECC-----EEEEecCCccCCCEEEEEEEEcCCC
Confidence            1223333222     788988874 899999999987644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.12  E-value=6.7e-10  Score=68.42  Aligned_cols=71  Identities=23%  Similarity=0.360  Sum_probs=51.9

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ...|..+.+.+|+++.|.|.+..                         +.|.+.+.|++++..+..           +..
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~~~~~~~-----------~~~   48 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKS-------------------------KSPAYTLVWTRVGGGLPS-----------RAM   48 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCC-------------------------CCCCcEEEEEECCCcCCC-----------ccc
Confidence            35677888999999999999853                         124667999998754211           000


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                           .....|.|.+++.+|+|.|.|.+.|..
T Consensus        49 -----~~~~~L~I~~v~~~DsG~Y~C~a~n~~   75 (85)
T cd05754          49 -----DFNGILTIRNVQLSDAGTYVCTGSNML   75 (85)
T ss_pred             -----ccCCEEEECCCCHHHCEEEEEEEeccC
Confidence                 012289999999999999999997753

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.12  E-value=6.3e-10  Score=65.64  Aligned_cols=50  Identities=28%  Similarity=0.421  Sum_probs=35.8

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      +.|+|.+.|+|++..+...        ..++....     .+|.|.+++.+|+|.|+|.+.+.
T Consensus         9 g~P~P~v~W~kdg~~l~~~--------~~~~~~~~-----~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           9 AFPAPEVIWLKDGLPAAEK--------CSRYHVDG-----YSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             EcCCCeEEEEECCEECCCC--------CcEEEeCC-----CEEEECcCCHHHCEEEEEEEEcc
Confidence            4678889999987653211        12222211     28999999999999999999775

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.11  E-value=2.4e-09  Score=68.08  Aligned_cols=45  Identities=24%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             ccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          88 ARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      +|+.+...  ..+.++|.|.+++.+|+|.|+|.+.+.... ..+.+.+
T Consensus        51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l   97 (100)
T cd05713          51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFY-EEATVEL   97 (100)
T ss_pred             ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEE
Confidence            45554332  235679999999999999999999865433 4444443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.11  E-value=1.7e-09  Score=67.22  Aligned_cols=84  Identities=23%  Similarity=0.358  Sum_probs=52.7

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ..+.+.+|+++.|.|...                           .|.+.+.||+++......   .......++.....
T Consensus         4 ~~~~~~eG~~v~L~C~~~---------------------------~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~~   53 (91)
T cd05871           4 KVVYGVENNSTFLECLPK---------------------------SPQASVKWLFQRGGDQRK---EEVKTEERLIHTER   53 (91)
T ss_pred             eEEEEecCCcEEEEEECC---------------------------CCCceEEEEEECCCCCcc---ccccccccEEEecC
Confidence            456788999999999952                           235679999854321110   00112334443322


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV  134 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~  134 (238)
                           .|.|.+++.+|+|.|.|.+.+...  ....+.|.|.
T Consensus        54 -----~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          54 -----GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             -----eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence                 799999999999999999975332  2334445543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=4.6e-10  Score=69.56  Aligned_cols=78  Identities=19%  Similarity=0.476  Sum_probs=57.9

Q ss_pred             cceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           9 PDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         9 p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      |.|.. ..+.+.|.+|+.+.|.|...                         .+.|.|.+.|++++...+        ..+
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP-------------------------~g~P~P~i~W~~~~~~~i--------~~~   49 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPP-------------------------KSAVPLRIYWMNSDLLHI--------TQD   49 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCC-------------------------CCCCCCEEEEECCCCccc--------ccc
Confidence            55553 45788999999999999852                         456688999998654322        234


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNP  123 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~  123 (238)
                      .|+.+...    .+|.|.+++.+|.| .|.|.+.+..
T Consensus        50 ~Ri~~~~~----GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          50 ERVSMGQN----GNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             ccEEECCC----ceEEEEEEehhhCCCCeEEEEEccc
Confidence            56655443    39999999999999 8999997653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.11  E-value=7.7e-10  Score=67.25  Aligned_cols=72  Identities=29%  Similarity=0.564  Sum_probs=56.2

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+..|+.+.|.|.+.+.|.+.+.|++ ++..+...             ...+.+..+..+|.|.|+|.+.+..+...+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~-------------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~   74 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSS-------------QNGLFIPNVSPEDSGNYTCRASNGSGSNTST   74 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEE-------------SSEEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeee-------------eeeeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence            457889999999999998889999999 55444311             1126677889999999999999977656677


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ++.|.|
T Consensus        75 ~~~v~V   80 (80)
T PF13895_consen   75 SVNVTV   80 (80)
T ss_dssp             EEEEEE
T ss_pred             eEEeeC
Confidence            777765

...

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.10  E-value=8.4e-10  Score=63.56  Aligned_cols=63  Identities=35%  Similarity=0.678  Sum_probs=48.2

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +|+.+.|.|.+.+.|.+.+.|++ ++..+..       ..........|.|.++...|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLPE-------SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEE-CCEECCC-------CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999998888899999999 4433320       112233445799999999999999999998765

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.09  E-value=2.7e-09  Score=65.65  Aligned_cols=72  Identities=21%  Similarity=0.396  Sum_probs=49.4

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      .+.+..|+++.|.|.+..                          .|.+.+.|++++..+..         ...+......
T Consensus         3 ~~~~~~G~~~~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~---------~~~~~~~~~~   47 (85)
T cd05729           3 LHAVPAGSTVRLKCPASG--------------------------NPRPTITWLKDGKPFKK---------EHRIGGYKVR   47 (85)
T ss_pred             eeEecCCCcEEEEEEcCC--------------------------CCCCeEEEEECCEECcc---------cCceeEEEcc
Confidence            456778999999999853                          34667999998654321         1111111112


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...+.|.|.++..+|+|.|.|.+.+..
T Consensus        48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~   74 (85)
T cd05729          48 KKKWTLILESVVPSDSGKYTCIVENKY   74 (85)
T ss_pred             CcEEEEEEeECCcccCEEEEEEEEECC
Confidence            233489999999999999999997753

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.09  E-value=2.1e-09  Score=65.20  Aligned_cols=69  Identities=6%  Similarity=0.037  Sum_probs=41.9

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE--EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT--HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .+.|.|.++|+|++..+.......     ..+...  ........|.|.+++.+|+|.|+|.+.|..+ .....+.|
T Consensus         8 ~G~P~P~v~W~k~g~~i~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~   78 (81)
T cd04971           8 RGNPKPTLTWYHNGAVLNESDYIR-----TEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG-QDSKSISA   78 (81)
T ss_pred             EeeCCCcEEEEECCEECcCCCcee-----EEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence            356789999999876543211000     000000  0112344899999999999999999988643 23334444

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.09  E-value=1.8e-09  Score=64.98  Aligned_cols=64  Identities=23%  Similarity=0.392  Sum_probs=41.8

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      +.|.|.+.|+|++..+...       ...++.....   ...|.|.+++.+|.|.|+|.+.|. +.....+.|.|
T Consensus         9 g~P~p~v~W~k~~~~l~~~-------~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           9 GIPLPRLTWLKNGMDITPK-------LSKQLTLIAN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             ecCCCEEEEEECCEECCCC-------CCccEEEeCC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            3457789999987654211       1223333221   127999999999999999999876 33444555555

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.07  E-value=9.5e-10  Score=68.31  Aligned_cols=74  Identities=20%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ..+.+.+.+|+.+.|.|...                         .+.|.+.+.|++++......       .+.|..+.
T Consensus         9 ~~~~~~v~eG~~~~L~C~pP-------------------------~g~P~p~~~W~k~~~~~~~~-------~d~r~~~~   56 (96)
T cd05727           9 ERDEVKVKEGWGVVLFCDPP-------------------------PHYPDLSYRWLLNEFPNFIP-------EDGRRFVS   56 (96)
T ss_pred             CcCceeeeeCCcEEEeeCCC-------------------------CCCCCCEEEEEECCcccccc-------cCCCeEEe
Confidence            34566789999999999863                         45668899999986442211       12222222


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .   .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus        57 ~---~~G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          57 Q---TNGNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             C---CCCcEEEeecCHhhCceeEEEEEec
Confidence            2   1239999999999999999999774

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.06  E-value=2.8e-09  Score=66.32  Aligned_cols=87  Identities=20%  Similarity=0.327  Sum_probs=60.3

Q ss_pred             CceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcc--eEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+.+.+|+++.|.|.+.++|.|. +.|.+++.. +...........  ....-.+.|.+.++..++.|.|+|.|.|..+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~-l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT-LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc-cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            446789999999999999999996 999985432 211111000000  0011235799999999999999999999988


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                       ..+.++.|.|+
T Consensus        90 -~~s~tF~l~v~  100 (101)
T cd05860          90 -SASVTFNVYVN  100 (101)
T ss_pred             -eEEEEEEEEEe
Confidence             33666666664

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=4.3e-09  Score=61.03  Aligned_cols=64  Identities=30%  Similarity=0.447  Sum_probs=42.5

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+..                         ..+...+.|++++..................        ...|
T Consensus         1 G~~v~L~C~~~~-------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--------~~~L   47 (64)
T PF00047_consen    1 GSSVTLTCSVSS-------------------------GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS--------TSRL   47 (64)
T ss_dssp             TSEEEEEEEEEE-------------------------SSSTSEEEEEETTTTTSEEEEEEEEETTTEE--------EEEE
T ss_pred             CCeEEEEeecCC-------------------------CCCCcEEEEEECCccccCcceeEeeccccee--------eeEE
Confidence            789999999921                         2235579999987765443322221111110        0049


Q ss_pred             EEcccCcccCeEEEEEE
Q psy7941         103 NIRSVRREDRGYYMCQV  119 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~  119 (238)
                      .|.+++.+|+|.|+|.|
T Consensus        48 ~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   48 TISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EESSCTGGGTEEEEEEE
T ss_pred             EEccCCHHHCEEEEEEC
Confidence            99999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.04  E-value=4.4e-09  Score=76.54  Aligned_cols=90  Identities=20%  Similarity=0.370  Sum_probs=62.0

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeee--------eecCCeEEeccC--------CCCceEEEEeCCceeeeeeeee
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------VNTGGSIVFPTD--------SSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .+...|++.|.|.++|..+. ...++.+.+        +..|+.+.+.|.        .|.|.++|+|++..+..     
T Consensus       104 ~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~-----  177 (227)
T PHA02826        104 NVINIDEGIYICTISSGNIC-EESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY-----  177 (227)
T ss_pred             CCChHHCEEEEEEEEECCcc-eEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC-----
Confidence            46788999999999996544 233333332        345777777764        35789999998765421     


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                          +.++.+...   ..+|.|.+++.+|+|.|+|.+..
T Consensus       178 ----~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        178 ----TDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             ----CCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEE
Confidence                234433321   12899999999999999999965

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=99.04  E-value=4.4e-09  Score=68.83  Aligned_cols=85  Identities=18%  Similarity=0.356  Sum_probs=57.8

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-eE----
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-HV----   83 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~~----   83 (238)
                      ..+..+.+.+|+++.|.|.+.+..                        .+.+.+.||+....  .  +..... ..    
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~------------------------~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~   58 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGID------------------------FSTTYIHWYRQKPGQALERLLYVSSTSTQRKL   58 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCC------------------------ccccEEEEEEECCCCCCEEEEEEecCCCcEEe
Confidence            467788899999999999986520                        12346999996321  1  111110 00    


Q ss_pred             -eecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 -ITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 -~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                       .....||.+..... ..++|.|.+++.+|+|.|.|.+..
T Consensus        59 ~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          59 SGGTKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CcccCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence             11246787766544 678999999999999999998853

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.03  E-value=3e-09  Score=68.39  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeee-Eee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEH-VIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~-~~~   85 (238)
                      +...|..+.+.+|++++|.|.+.+..+                         ...+.|||...  ..  +...... ...
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~-------------------------~~~~~Wyrq~~g~~~~~l~~~~~~~~~~   57 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVS-------------------------SNYLAWYQQKPGQAPKLLIYGASTLASG   57 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCC-------------------------CCcEEEEEECCCCCcEEEEECccccCCC
Confidence            456778889999999999999864321                         23489998642  11  1111110 111


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...|+.... ....+.|.|.+++.+|+|.|.|.+.+
T Consensus        58 ~~~r~~~~~-~~~~~~L~I~~~~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          58 TPSRFSGSG-SGTDFTLTISRVEPEDAAVYYCQQYG   92 (106)
T ss_pred             CCCCEEEec-cCCEEEEEECCCChHHCEEEEEEEeC
Confidence            235676643 34667899999999999999998843

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.03  E-value=3.4e-09  Score=65.90  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=48.8

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ...+.+|.++.|.|.......                     ...|.+.+.|+|++..+..         ..+. ..   
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~---------------------~~~~~p~i~Wyk~~~~i~~---------~~~~-~~---   49 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFK---------------------NENTLPPVQWYKDCKLLEG---------DRKR-FV---   49 (92)
T ss_pred             eEEEeeccCCEEECCChHHcc---------------------CCCCCCcEEEeECCEECCC---------CccE-Ee---
Confidence            345789999999998643110                     1235778999998765421         1111 11   


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                       ....|.|.+++.+|+|.|+|.+.+.
T Consensus        50 -~~~~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757          50 -KGSKLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             -cCCEEEEeeCChhhCEEEEEEEEec
Confidence             1229999999999999999999764

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=99.02  E-value=3.1e-09  Score=67.02  Aligned_cols=81  Identities=17%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEeecC----ccEEE
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVITNN----ARLSV   92 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~----~~~~~   92 (238)
                      ..|++++|+|.....  ..                       ...+.|++..........    .......    .|+.+
T Consensus         2 ~~G~sVtL~c~~~~~--~~-----------------------~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~   56 (97)
T cd05775           2 ILGGSVTLPLNIPDG--TE-----------------------IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF   56 (97)
T ss_pred             ccCCeEEEeCCCCCC--cE-----------------------EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe
Confidence            469999999987531  11                       225899997543332221    1111112    23333


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceee
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA  129 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  129 (238)
                         ....++|.|.+++.+|+|.|.|.+..........
T Consensus        57 ---~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~   90 (97)
T cd05775          57 ---SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITK   90 (97)
T ss_pred             ---cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEE
Confidence               3346799999999999999999997654433333

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=99.01  E-value=6e-09  Score=66.91  Aligned_cols=81  Identities=21%  Similarity=0.435  Sum_probs=54.1

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeeee----EeecCcc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHEH----VITNNAR   89 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~~----~~~~~~~   89 (238)
                      +.+.+|++++|.|.+.+..                         +...+.|++....  .  +......    .....+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r   55 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSF-------------------------SSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGR   55 (105)
T ss_pred             CeecCCCCEEEEEEEeCCc-------------------------CcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCc
Confidence            3578999999999997540                         1345899996431  1  1111110    1123456


Q ss_pred             EEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          90 LSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        90 ~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      +.+..... ..++|.|.+++.+|+|.|.|.+.+..
T Consensus        56 ~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~   90 (105)
T cd00099          56 FSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSG   90 (105)
T ss_pred             EEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            76665443 67899999999999999999996544

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.01  E-value=1.4e-08  Score=63.57  Aligned_cols=83  Identities=16%  Similarity=0.269  Sum_probs=56.4

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.++.+.....+.+|+++.|.|.+...+                         ++..+.|...+..+..       ....
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P-------------------------~P~~i~W~w~~~~i~~-------~~~~   49 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTP-------------------------PPDRIAWAWKENVLES-------GTSE   49 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCC-------------------------CCcEEEEEEccccccC-------CCCC
Confidence            3445788888999999999999994221                         1235677775442211       1134


Q ss_pred             cEEEEEcC---CCeEEEEEcccCccc-CeEEEEEEecCC
Q psy7941          89 RLSVTHND---ANTWTLNIRSVRRED-RGYYMCQVNTNP  123 (238)
Q Consensus        89 ~~~~~~~~---~~~~~L~i~~~~~~d-~G~Y~C~~~~~~  123 (238)
                      |+.+....   .....|.|.++..+| .|.|.|.+.|.-
T Consensus        50 r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~   88 (98)
T cd05898          50 RYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF   88 (98)
T ss_pred             CEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence            66665432   345589999998877 799999998753

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.01  E-value=4.6e-09  Score=63.21  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCc----ccCeEEEEEEecCCCc
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR----EDRGYYMCQVNTNPMT  125 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~  125 (238)
                      .++|.|+++|+|++..+...       .+.++.....   ..+|.|..+..    .|.|.|+|.+.|..+.
T Consensus         8 ~G~P~P~i~W~k~g~~l~~~-------~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05874           8 KGKPPPSFSWTRNGTHFDID-------KDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERGA   68 (77)
T ss_pred             cccCCCeEEEEECCeECCCc-------CCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence            45678999999987654211       1223332211   12677766654    4789999999886543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.00  E-value=1.4e-08  Score=65.26  Aligned_cols=81  Identities=20%  Similarity=0.318  Sum_probs=49.8

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---e-e-eeee-e--eE-eecCccEEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---A-V-LAIH-E--HV-ITNNARLSV   92 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~-~-~~~~-~--~~-~~~~~~~~~   92 (238)
                      .|++++|.|.+.......                    ......+.|+|....   . . .... .  .. ....+|+.+
T Consensus         1 ~G~~vtL~C~~~~~~~~~--------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   60 (106)
T cd05877           1 RGGNVTLPCRYHYEPELS--------------------APRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFL   60 (106)
T ss_pred             CCCcEEEEeEeECCCcCC--------------------CCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEe
Confidence            489999999986431000                    011346999996421   1 1 1110 0  00 112356666


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .....+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~   90 (106)
T cd05877          61 RRAHDLDASLVITDLRLEDYGRYRCEVIDG   90 (106)
T ss_pred             cCCCCCcEEEEEccCChHHCEEEEEEEEec
Confidence            544456779999999999999999999654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.99  E-value=4.3e-09  Score=63.42  Aligned_cols=56  Identities=16%  Similarity=0.306  Sum_probs=35.8

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCc----ccCeEEEEEEecCCC
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR----EDRGYYMCQVNTNPM  124 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~  124 (238)
                      .+.|.|.++|+|++..+...       .+.++....   ...+|.|.++..    +|+|.|.|.+.|..+
T Consensus         8 ~G~P~P~v~W~k~g~~l~~~-------~~~~~~~~~---~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05733           8 KGNPPPTFSWTRNGTHFDPE-------KDPRVTMKP---DSGTLVIDNMNGGRAEDYEGEYQCYASNELG   67 (77)
T ss_pred             cccCCCeEEEEECCeECCCC-------CCCCEEEeC---CCCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence            35678899999987654221       122332221   122788887753    789999999988654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.99  E-value=6.3e-09  Score=62.59  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=36.1

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccC----cccCeEEEEEEecCCCcc
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVR----REDRGYYMCQVNTNPMTK  126 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~~~~~~~~~  126 (238)
                      .+.|.|.++|+|++..+...       .+.++.+...   ..+|.|.++.    ..|+|.|.|.+.|..+..
T Consensus         8 ~G~P~P~v~W~k~g~~~~~~-------~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           8 KGNPVPTFQWTRNGKFFNVA-------KDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             cccCCCEEEEEECCEEccCc-------CCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            35678899999987543111       1333433211   1278887764    246999999998875533

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.99  E-value=1.1e-08  Score=64.66  Aligned_cols=46  Identities=35%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v  133 (238)
                      +|+.........++|.|.+++.+|+|.|.|.+.....  ....+.|+|
T Consensus        49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            3444444445677999999999999999999966433  333444554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.98  E-value=1.7e-08  Score=65.68  Aligned_cols=86  Identities=22%  Similarity=0.480  Sum_probs=57.0

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc---e-eee-e---eeeeE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT---K-AVL-A---IHEHV   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~-~~~-~---~~~~~   83 (238)
                      ..++..+.+.+|+++.|.|.+. . ..                       ....+.|++...   . .+. .   .....
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~-~-~~-----------------------~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~   59 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYS-S-SS-----------------------NQSSVYWYRQSPGQGPQLIIRYSLSSTNET   59 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEE-S-SS-----------------------SGSEEEEEEEETTSEEEEEEEEETTEEEEE
T ss_pred             EEeCCeEEEecCCCEEEEEEEe-C-CC-----------------------CcceEEEEEECccccceeeeeeccceeeec
Confidence            3457788999999999999997 1 11                       133599999533   1 111 0   00111


Q ss_pred             --eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 --ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 --~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                        ....+|+.+..+. ...++|.|.+++.+|+|.|.|.+...
T Consensus        60 ~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   60 PTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EETTETTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             cccceeeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence              1123466555443 37889999999999999999999654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.98  E-value=1.2e-08  Score=64.57  Aligned_cols=85  Identities=22%  Similarity=0.413  Sum_probs=49.6

Q ss_pred             CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e-eeeee---eeEee--cCccEEEEEc
Q psy7941          24 RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A-VLAIH---EHVIT--NNARLSVTHN   95 (238)
Q Consensus        24 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~-~~~~~---~~~~~--~~~~~~~~~~   95 (238)
                      ++++|.|.+.......                       ...+.|+|....  . .....   ...+.  ...|..+...
T Consensus         1 ~~v~L~C~~~~~~~~~-----------------------~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~   57 (98)
T cd05718           1 ESVTLECSFPVPGPVQ-----------------------ITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS   57 (98)
T ss_pred             CCEEEEeEeeCCCCce-----------------------EEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC
Confidence            5789999987543211                       335999996542  1 11000   00011  1334444433


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEE
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL  131 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l  131 (238)
                      ....++|.|.+++.+|+|.|.|.+...........+
T Consensus        58 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~   93 (98)
T cd05718          58 SLEDATISISNLRLEDEGNYICEFATFPQGNRQKVT   93 (98)
T ss_pred             CCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEE
Confidence            336679999999999999999998654333333333

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.98  E-value=2.4e-09  Score=66.55  Aligned_cols=80  Identities=20%  Similarity=0.384  Sum_probs=54.5

Q ss_pred             eecCCCcEEEEEEE-ccc----cCCeEEEEeCCCeeeEeecCCCCCcceEE-EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         149 MVPEGGSAKLVCKA-KGY----PTPKITWRREDNKEIIVRSNPPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       149 ~~~~g~~~~l~C~~-~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..|.+..|.|.- .++    +.+.++|++ ++.++....     ..... .....|.|.++..+|+|.|+|.+.+..|
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKDN-----EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCCC-----cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            45678889999973 333    567999999 565543211     11111 1234799999999999999999999875


Q ss_pred             C---CccceEEEEEE
Q psy7941         223 P---TVSKRLMLHVH  234 (238)
Q Consensus       223 ~---~~~~~~~l~V~  234 (238)
                      .   ..++++.|.|.
T Consensus        80 g~~y~vtr~~~l~v~   94 (95)
T cd05897          80 GKKYNITRIIKLRIV   94 (95)
T ss_pred             CEEEEEEEEEEEEEc
Confidence            2   34566666653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.97  E-value=1.8e-09  Score=67.14  Aligned_cols=75  Identities=15%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEee-------cCCCCCcceE------EEeeceEEEEEeecCCCeEEE
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR-------SNPPSSQKVF------SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +.+..|+++.|.|.+.+.+.+.+.|++++.+.....       .......+..      ......|.|.++..+|+|.|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            356789999999999988899999996432221100       0000000100      111236999999999999999


Q ss_pred             EEeeeCCC
Q psy7941         215 CIAANGVP  222 (238)
Q Consensus       215 C~~~n~~g  222 (238)
                      |.+.|..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99998765

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.97  E-value=7.4e-09  Score=67.70  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--eee-eee--eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AVL-AIH--EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~~-~~~--~~~~~   85 (238)
                      +...+..+.+.+|+++.|+|.+.....                         ...+.||+....  +.. ...  .....
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~Wyrq~~~~~~~~l~~~~~~~~~~   56 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWT-------------------------NYYIFWYKQLPSGEMTFLIRQKSIYGNA   56 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCC-------------------------ceEEEEEEECCCCceEEEEEecCccCCc
Confidence            356677889999999999999864211                         235899996322  111 110  01112


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .++|+.+... ....++|.|.+++.+|+|.|.|.+..
T Consensus        57 ~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          57 TKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             cCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            2468887643 34678999999999999999999864

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.97  E-value=2.1e-08  Score=64.44  Aligned_cols=93  Identities=24%  Similarity=0.348  Sum_probs=53.1

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--c--e-eeee-eeeeE---eecCccEEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--T--K-AVLA-IHEHV---ITNNARLSV   92 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~--~-~~~~-~~~~~---~~~~~~~~~   92 (238)
                      .|++++|.|.+.......                    ....+.+.|++..  .  . .... .....   .....|+..
T Consensus         1 ~G~~V~L~C~~~~~~~~~--------------------~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~   60 (106)
T cd05714           1 LGGNVTLPCRFHLEPALS--------------------APHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPL   60 (106)
T ss_pred             CCCCEEEeEEeECCcccC--------------------CCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEe
Confidence            489999999987532100                    0114569999972  1  1 1111 11111   111223333


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      .......++|+|.+++.+|+|.|.|.+.+... ......|.|.
T Consensus        61 ~~~~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          61 YPADPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             eCCCCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            22344677999999999999999999976522 2334445543

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.97  E-value=1.2e-08  Score=64.59  Aligned_cols=81  Identities=22%  Similarity=0.409  Sum_probs=53.5

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeeeeEeecCccEEEE
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHEHVITNNARLSVT   93 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~   93 (238)
                      +.+.+|++++|+|.+....                         ....+.|+|.....    +...........+|+.+.
T Consensus         2 v~~~~G~~vtl~C~~~~~~-------------------------~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~   56 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKN-------------------------RSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT   56 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCC-------------------------CCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE
Confidence            5688999999999986421                         12358999975321    110111111224567665


Q ss_pred             E-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          94 H-NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        94 ~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      . ...+.++|+|.+++.+|+|.|.|.+...+
T Consensus        57 ~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          57 DDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             ecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            3 33467899999999999999999986543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.97  E-value=2.9e-08  Score=64.61  Aligned_cols=89  Identities=19%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---ce--eeeeeee-eEeec
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TK--AVLAIHE-HVITN   86 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~--~~~~~~~-~~~~~   86 (238)
                      ..+..+.+.+|++++|.|.+......                      .....+.|++..   ..  ....... .....
T Consensus         3 ~~~~~v~~~~G~~v~L~C~~s~~~~~----------------------~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~   60 (115)
T cd05880           3 YTSKEVEAVNGTDVRLKCTFSSSAPI----------------------GDTLVITWNFRPLDGGREESVFYYHKRPYPPP   60 (115)
T ss_pred             ecCceEEEEcCCCEEEEEEEEeCCCC----------------------CCcEEEEEEEECCCCCceeEEEEECCCccccC
Confidence            34678899999999999998642211                      012358997531   11  1111111 10111


Q ss_pred             C----ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          87 N----ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        87 ~----~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .    .|+.... .....++|.|.+++.+|+|.|+|.+.+..
T Consensus        61 ~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~  102 (115)
T cd05880          61 DGRFKGRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPP  102 (115)
T ss_pred             cccccCeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCC
Confidence            1    2333332 23356799999999999999999997643

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.97  E-value=8e-09  Score=61.95  Aligned_cols=57  Identities=18%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.+.|+|++..+......      ..+.+. ......+|.|.+++.+|+|.|+|.+.|...
T Consensus        11 ~P~p~~~W~k~g~~l~~~~~~------~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   67 (75)
T cd05750          11 YPSLRFKWFKDGKELNRKNKP------RNIKIR-NKKKNSELQINKAKLADSGEYTCVVENILG   67 (75)
T ss_pred             CCCceEEEEcCCeeccccCCc------ceEEEE-ecCceEEEEEccCCcccCeEEEEEEEEcCC
Confidence            567889999986654321100      011111 122334899999999999999999987643

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.96  E-value=2.8e-08  Score=62.00  Aligned_cols=46  Identities=24%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v  133 (238)
                      +|.........+.+|.|.|++.+|+|.|.|.+.+....+..  +.|+|
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            46655444456779999999999999999999775444444  44444

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.96  E-value=1.5e-08  Score=64.40  Aligned_cols=89  Identities=22%  Similarity=0.346  Sum_probs=53.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee-eeeeeeeEe---------
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA-VLAIHEHVI---------   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~---------   84 (238)
                      +....+.+|+++.|.|....  .                        +...+.|+|..... ......+..         
T Consensus         5 ~~p~~~~~G~~V~L~v~~~p--~------------------------~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp   58 (105)
T cd05774           5 LVPPQVAEGENVLLLVHNLP--E------------------------NLLAYAWYKGKTVSPNFLIASYIISTNSSTPGP   58 (105)
T ss_pred             ccCCcccCCCCEEEEecCCC--C------------------------CceEEEEEcCCCCCCCEEEEEEECCCcccccCc
Confidence            33445789999999997531  1                        13369999963221 001111111         


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      ...+|..+..+.    +|.|.+++.+|+|.|+|.+.+.......+.+.+
T Consensus        59 ~~~gR~~~~~ng----SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          59 AYSGRETIYPNG----SLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             ccCCcEEEeCCC----cEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence            123454444433    999999999999999999977654444444433

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.96  E-value=9.4e-09  Score=62.45  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      .+.+.+..|+++.|.|.....                           .+.+.|++++..+.         .+.++....
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~---------------------------~A~v~W~~ng~~l~---------~~~r~~~~~   46 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN---------------------------LASPVWLFNGTPLN---------AQFSYRVGT   46 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC---------------------------CccEEEEECCcccC---------CCcceEEeC
Confidence            456789999999999998532                           45699999887642         234444443


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .     .|.|.+++.+|+|.|.|.+...+.....+.+.+
T Consensus        47 ~-----GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l   80 (85)
T cd05872          47 D-----GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSL   80 (85)
T ss_pred             C-----CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEE
Confidence            3     688999999999999999965555444333333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.96  E-value=1.8e-08  Score=65.80  Aligned_cols=87  Identities=17%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-----eeeee-eeeEee-c
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-----AVLAI-HEHVIT-N   86 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~~~~~-~~~~~~-~   86 (238)
                      .|..+.+.+|++++|.|.+......                      .....+.|++....     ..... ...... .
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~----------------------~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~   61 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPI----------------------SDDISVTWSFQPEGSGDTESIFHYHKGPYYPLK   61 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCc----------------------CCceEEEEEEecCCCCCcEEEEEEcCCcccccc
Confidence            4677889999999999998643211                      01235899874321     11111 111110 1


Q ss_pred             C----ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 N----ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~----~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .    .|+.+... ..+.++|+|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~  102 (116)
T cd05715          62 DGRFKDRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNP  102 (116)
T ss_pred             CccccCcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeC
Confidence            1    34444332 224579999999999999999999754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.95  E-value=7.6e-09  Score=64.72  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-------eeeEe--ecCccEEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-------HEHVI--TNNARLSVT   93 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-------~~~~~--~~~~~~~~~   93 (238)
                      |++++|.|.+....                          ...+.|++.........       .....  ...+|+.+.
T Consensus         1 G~~VtL~c~~~~~~--------------------------~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~   54 (92)
T cd05741           1 GESVTLPVSNLPEN--------------------------LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY   54 (92)
T ss_pred             CCcEEEEcccCCCC--------------------------CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc
Confidence            78999999875311                          33599999754322111       00011  112344443


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCcce
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ  127 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  127 (238)
                      ..    .+|.|.+++.+|+|.|+|.+........
T Consensus        55 ~~----~sL~I~~l~~~DsG~Y~c~v~~~~~~~~   84 (92)
T cd05741          55 PN----GSLLIQNLTKEDSGTYTLQIISTNGVTE   84 (92)
T ss_pred             CC----ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence            32    5999999999999999999976543333

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.95  E-value=1.5e-08  Score=60.89  Aligned_cols=57  Identities=16%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.+.+.|++++..+....     ....++.... .....+|.|.+++.+|+|.|+|.+.|..
T Consensus        11 ~p~~~~~W~~~g~~i~~~~-----~~~~~~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~a~N~~   67 (76)
T cd05895          11 YPSLRFKWFKNGKEIGAKN-----KPDNKIKIRK-KKKSSELQISKASLADNGEYKCMVSSKL   67 (76)
T ss_pred             CCCCceEEEECCcccccCC-----CCCceEEEEe-CCcEEEEEECcCCcccCEEEEEEEEeCC
Confidence            4567899999765442110     0112222221 2234489999999999999999998754

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=1.2e-08  Score=61.90  Aligned_cols=77  Identities=22%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.+..++  ..+.+|+++.|.|.+..                          .|.+++.|++++..+...        ..
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~--------------------------~p~~~~~w~~~~~~~~~~--------~~   45 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSG--------------------------NPPPQVQWYKNGSPINSS--------QN   45 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEES--------------------------SSSSEEEEEETTEEEEEE--------SS
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEc--------------------------ccceeeeeeeeeeeeeee--------ee
Confidence            4454444  55789999999999862                          335679999976443210        00


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                                  .+.+.+++.+|.|.|+|.+.+.........+.|
T Consensus        46 ------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen   46 ------------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             ------------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             ------------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence                        367788999999999999977544334444444

...

>smart00409 IG Immunoglobulin

Probab=98.95  E-value=2.9e-08  Score=60.76  Aligned_cols=80  Identities=30%  Similarity=0.546  Sum_probs=56.6

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++++..+...     ........  ...|.|.++..+|.|.|+|.+.+..+.. 
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-   77 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-   77 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-
Confidence            456789999999999888888999999524333211     01111111  2479999999999999999999888744 


Q ss_pred             cceEEEEE
Q psy7941         226 SKRLMLHV  233 (238)
Q Consensus       226 ~~~~~l~V  233 (238)
                      ...+.|.|
T Consensus        78 ~~~~~l~V   85 (86)
T smart00409       78 SSTTTLTV   85 (86)
T ss_pred             EEEEEEEE
Confidence            44466665

>smart00410 IG_like Immunoglobulin like

Probab=98.95  E-value=2.9e-08  Score=60.76  Aligned_cols=80  Identities=30%  Similarity=0.546  Sum_probs=56.6

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ..+..|+.+.|.|.+.+.+.+.+.|+++++..+...     ........  ...|.|.++..+|.|.|+|.+.+..+.. 
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-   77 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES-----GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-   77 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC-----CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-
Confidence            456789999999999888888999999524333211     01111111  2479999999999999999999888744 


Q ss_pred             cceEEEEE
Q psy7941         226 SKRLMLHV  233 (238)
Q Consensus       226 ~~~~~l~V  233 (238)
                      ...+.|.|
T Consensus        78 ~~~~~l~V   85 (86)
T smart00410       78 SSTTTLTV   85 (86)
T ss_pred             EEEEEEEE
Confidence            44466665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.94  E-value=3.1e-08  Score=63.78  Aligned_cols=98  Identities=17%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeE-e--ecCccEEEEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHV-I--TNNARLSVTH   94 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~-~--~~~~~~~~~~   94 (238)
                      .|++++|.|.+.......-+.            -  ..+...+.+.|+|...  +  ......... +  ...+|+++..
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~------------~--~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~   66 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGA------------P--TVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPN   66 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccc------------c--ccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecc
Confidence            489999999997532110000            0  0001135799998632  1  111111111 1  1234777654


Q ss_pred             c--CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          95 N--DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        95 ~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .  ....++|+|.+++.+|+|.|+|.+..+ ........|.|
T Consensus        67 ~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          67 YPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEE
Confidence            2  346779999999999999999999754 22333334444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.93  E-value=4.4e-08  Score=63.55  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=54.7

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-Cce-----eeeeeeeeEee--
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTK-----AVLAIHEHVIT--   85 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~-----~~~~~~~~~~~--   85 (238)
                      .+..+.+..|+++.|.|.+.....                      ..+..++.|.+. ...     .........+.  
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~----------------------~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~   61 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEW----------------------ISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDD   61 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCC----------------------CCCcEEEEEEEcCCCCCccEEEEEeCCCceeccc
Confidence            456788999999999999964321                      112456889442 211     11111111111  


Q ss_pred             ---cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 ---NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ---~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                         ..+|+...... .++.+|.|.+++.+|.|.|+|.+.+.
T Consensus        62 ~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~  102 (116)
T cd05879          62 VGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNP  102 (116)
T ss_pred             ccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcC
Confidence               12355544332 36679999999999999999999874

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.93  E-value=1.2e-08  Score=63.73  Aligned_cols=84  Identities=17%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             eeecCCCcEEEEEEE-c-----ccc-----CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941         148 MMVPEGGSAKLVCKA-K-----GYP-----TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~-~-----~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      ..+.+|+.+.|.|.. .     +++     ...+.|++++........ ...........+..|.|..+..+|+|.|+|.
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~-~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIE-IIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCc-ccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            557889999999986 1     122     337999995422221111 0011123345667899999999999999999


Q ss_pred             eeeCCCCCccceEEEEE
Q psy7941         217 AANGVPPTVSKRLMLHV  233 (238)
Q Consensus       217 ~~n~~g~~~~~~~~l~V  233 (238)
                      +.|... ....++.|+|
T Consensus        89 ~rN~t~-C~~~~i~l~V  104 (104)
T cd05896          89 LRNSTY-CMKVSMSLTV  104 (104)
T ss_pred             ECCCCc-ceEEEEEEEC
Confidence            999876 3344555443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.92  E-value=1.7e-08  Score=60.71  Aligned_cols=79  Identities=24%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.| .|.+.|.|++ ++..+.................+.|.+ .+..+|.| .|+|.|.|+.-.....++.|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFK-GNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEE-CCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            689999977 8999999999 555554321100001011112234555 45666666 9999999987556678888988


Q ss_pred             Eee
Q psy7941         234 HCT  236 (238)
Q Consensus       234 ~~~  236 (238)
                      ++.
T Consensus        80 ~y~   82 (82)
T cd05883          80 QYK   82 (82)
T ss_pred             EEC
Confidence            863

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.92  E-value=1.2e-08  Score=64.58  Aligned_cols=78  Identities=23%  Similarity=0.339  Sum_probs=51.0

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-eEeecCccEEEE
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-HVITNNARLSVT   93 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~~~~~~~~~~~~   93 (238)
                      .+.+|+++.|.|.++...                        .....+.||+....  +  +..... ......+|+...
T Consensus         2 ~v~~G~~v~l~C~~~~~~------------------------~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~   57 (98)
T cd04984           2 SVSPGETVTITCTGSSGN------------------------ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS   57 (98)
T ss_pred             ccCCCCCEEEEEEEcCCC------------------------cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE
Confidence            578999999999986431                        01234899986532  1  111111 101124577765


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ... ..++|.|.+++.+|+|.|.|.+.+
T Consensus        58 ~~~-~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          58 KSG-NTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             ccC-CEEEEEECCCChhhCEEEEEEEcc
Confidence            543 677999999999999999998853

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.91  E-value=9.7e-09  Score=64.14  Aligned_cols=84  Identities=18%  Similarity=0.392  Sum_probs=51.3

Q ss_pred             CceeEEEecCCEEEEeEEecC---CCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNL---GGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      .....+.+|+.+.|.|..-..   .+...                  .......+.|+|++........  ......|+.
T Consensus         7 ~~~~~~~~GE~v~l~C~~~~~~~~~~~~~------------------~~~~~~~v~WyK~~~~~~~~~~--~~~~~~Ri~   66 (104)
T cd05896           7 LKKYMVLAGEPVRIKCALFYGYIRTNYSM------------------AQSAGLSLMWYKSSGDGEEPIE--IIFDGVRMS   66 (104)
T ss_pred             eeeEEEcCCCeEEEECCCccccccccccc------------------cccCCceEEEEECCCCCCCCCc--ccccceeEE
Confidence            355789999999999996210   00000                  0011235999998643322111  000112444


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ....     .|.|.++..+|+|.|+|++.|..
T Consensus        67 ~~~~-----~Lwf~Pa~~eDSG~Y~C~~rN~t   93 (104)
T cd05896          67 KEED-----SIWFRPAELQDSGLYTCVLRNST   93 (104)
T ss_pred             EeCC-----EEEEEeCChhhCeEEEEEECCCC
Confidence            4443     99999999999999999997754

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.91  E-value=1.4e-08  Score=62.03  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=48.2

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEE
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l  231 (238)
                      +.|.|.+.| +|.+.++|++ ++..+........  .........+.|.+.....+|.|.|+|.|.|... ....++++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999987 7888999999 5554432110000  0000111223577777777788899999999874 344666666


Q ss_pred             EE
Q psy7941         232 HV  233 (238)
Q Consensus       232 ~V  233 (238)
                      .|
T Consensus        81 ~v   82 (82)
T cd05759          81 DV   82 (82)
T ss_pred             cC
Confidence            54

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.91  E-value=4.9e-08  Score=62.97  Aligned_cols=97  Identities=20%  Similarity=0.339  Sum_probs=56.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee-e-eeeeeE-e--ecCccEEEEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV-L-AIHEHV-I--TNNARLSVTH   94 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~-~-~~~~~~-~--~~~~~~~~~~   94 (238)
                      .|++++|+|.+.........                +.+.....+.|+|...  ... . ...... .  ...+|+.+..
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~----------------~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~   64 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPP----------------SNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPN   64 (110)
T ss_pred             CCCCEEEeeEeeCCcccccc----------------ccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEecc
Confidence            38999999999753211000                0001135699999632  111 1 111111 1  1234666543


Q ss_pred             --cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941          95 --NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV  134 (238)
Q Consensus        95 --~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  134 (238)
                        ...+..+|+|.+++.+|+|.|.|.+... ........|.|.
T Consensus        65 ~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          65 YPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             CCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence              2346779999999999999999999654 344555556654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.91  E-value=3e-09  Score=61.71  Aligned_cols=59  Identities=27%  Similarity=0.531  Sum_probs=41.3

Q ss_pred             CCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec----eEEEEEeecCCCeEEEEEe
Q psy7941         153 GGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       153 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~y~C~~  217 (238)
                      |+.+.|.|.+ .+.+...+.|++++.........      .......    .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT------NRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE------EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee------EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999 66778899999965433322110      0000111    3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.91  E-value=5.6e-08  Score=60.69  Aligned_cols=47  Identities=26%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      +|+........+.+|.|.|++.+|+|.|+|.+.+.......+.+.|.
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            45555443335679999999999999999999887666677666664

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=2.9e-08  Score=61.05  Aligned_cols=84  Identities=21%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTL  102 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (238)
                      |+++.|.|.+....                        .+...+.|..++.........    ...+...........+|
T Consensus         1 Ge~~~L~C~~~~~~------------------------~~~~~~~W~~p~~~~~~~~~~----~~~~~~~~~~~~~~s~L   52 (86)
T cd05862           1 GEKLVLNCTARTEL------------------------NVGIDFQWDYPGKKEQRAKSV----SENRRSLQEHTELSSTL   52 (86)
T ss_pred             CCcEEEEEEEEeCC------------------------CCcEEEEEEcCCcccccceec----ccccccccccceeeeEE
Confidence            78999999996421                        123458999876543211100    00011111111123499


Q ss_pred             EEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941         103 NIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus       103 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      .|.+++.+|+|.|+|.+.+... ....+.+.|+
T Consensus        53 ~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          53 TIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             EEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            9999999999999999987532 3444455553

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.90  E-value=1.8e-08  Score=66.12  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=57.1

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeE----e
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHV----I   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~----~   84 (238)
                      ..|+.+.+.+|++++|.|.+.......                    ......+.||+....    .........    .
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~--------------------~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~   63 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWP--------------------VSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHE   63 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCccccc--------------------CCCceEEEEEeCCCCCCCCCcEEEcCCCccccc
Confidence            457788999999999999885321100                    001235899997532    111111100    1


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...+|+.+.. ...+.++|.|.+++.+|+|.|.|.+..
T Consensus        64 ~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          64 STRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             cccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence            1235777753 355678999999999999999999854

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.87  E-value=3e-08  Score=59.45  Aligned_cols=58  Identities=17%  Similarity=0.332  Sum_probs=40.2

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .++|++.++||+++.++....  .....+..+....      +|.+.-....|++.|+|++.|...
T Consensus        10 ~skP~a~i~W~k~~~~l~~~~--~~~~~~~~~t~~s------~L~~~~~~~Ddg~~~~C~A~n~a~   67 (80)
T cd05885          10 RSKPAATLRWYRDRKELKGVI--SQQENGKTVSVSN------TIRFPVDRKDDGAILSCEASHPAL   67 (80)
T ss_pred             CccCCCeEEEEECCEECCCCc--ccccCCceEEEEE------EEEEEeeeccCCcEEEEEEEChhh
Confidence            456799999999887764321  1112233444433      799988889999999999988543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>KOG3515|consensus

Probab=98.87  E-value=7.1e-08  Score=79.95  Aligned_cols=172  Identities=21%  Similarity=0.357  Sum_probs=105.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|....+.-...+..|+.+.|.|.+..                         +.|..++.|++.+..+.           
T Consensus         7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~-------------------------~pp~~~~eW~h~~~~~~-----------   50 (741)
T KOG3515|consen    7 VPVCESSSLTVGLRLGEDVPLPCRVNS-------------------------NPPEIDVEWYHSTSGEH-----------   50 (741)
T ss_pred             CccccCCCCChhhccCCcceeeeecCC-------------------------CCCCcceEEEecCcccc-----------
Confidence            444444433448999999999999963                         44577899999765432           


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE--c
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA--K  163 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~  163 (238)
                      .|......    -+|..........+.|.|++.+.  ........+.+..++.-...  .......++..+.+.|.+  .
T Consensus        51 ~~~~~~~~----~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~  124 (741)
T KOG3515|consen   51 GRYATIAD----PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVA  124 (741)
T ss_pred             cccccccC----CceeeecchhhhhhhhhhhhcccccCceecceeeccccCcccccc--ccchhhhcCCeEEEEEeecCC
Confidence            11111111    17777777788889999999664  22233344666665553321  222345667889999965  3


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCC----CcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPS----SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +.|.+.+.|..+.............    ...........+.+...+..+.|.|+|.|.|..
T Consensus       125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~  186 (741)
T KOG3515|consen  125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRN  186 (741)
T ss_pred             CCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccccc
Confidence            4778899999843222222110000    011111334567888888999999999999963

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.87  E-value=1.4e-08  Score=63.51  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEee-------c----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVR-------S----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      |++++|.|.....+...+.|++.........       .    ......+.....+..|.|.+++.+|+|.|+|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            6789999988766666999998543211100       0    0112233344455789999999999999999999888


Q ss_pred             CCCccceEEEEE
Q psy7941         222 PPTVSKRLMLHV  233 (238)
Q Consensus       222 g~~~~~~~~l~V  233 (238)
                      |....+.+.|.|
T Consensus        81 ~~~~~~~~~l~v   92 (92)
T cd05741          81 GVTENAKFFLRV   92 (92)
T ss_pred             CcEEEEEEEEEC
Confidence            755566665543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>smart00410 IG_like Immunoglobulin like

Probab=98.85  E-value=1.5e-07  Score=57.53  Aligned_cols=72  Identities=28%  Similarity=0.529  Sum_probs=51.4

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-CceeeeeeeeeEeecCccEEEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ..+.+..|+++.|.|.+...                          +.+.+.|+++ +..+.         ...++....
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~--------------------------~~~~~~W~~~~~~~v~---------~~~~~~~~~   46 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGS--------------------------PPPEVTWYKQGGKLLA---------ESGRFSVSR   46 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccC--------------------------CCCeEEEEECCCEEcC---------CCCcEEEEE
Confidence            45678899999999999743                          2557999997 33221         233444333


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ... ..+|.|.++..+|+|.|.|.+.+..
T Consensus        47 ~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00410       47 SGS-NSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             cCC-eeEEEEEeeccccCeEEEEEEEcCC
Confidence            322 4489999999999999999997543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.85  E-value=1.5e-07  Score=57.53  Aligned_cols=72  Identities=28%  Similarity=0.529  Sum_probs=51.4

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC-CceeeeeeeeeEeecCccEEEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA-DTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ..+.+..|+++.|.|.+...                          +.+.+.|+++ +..+.         ...++....
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~--------------------------~~~~~~W~~~~~~~v~---------~~~~~~~~~   46 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGS--------------------------PPPEVTWYKQGGKLLA---------ESGRFSVSR   46 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccC--------------------------CCCeEEEEECCCEEcC---------CCCcEEEEE
Confidence            45678899999999999743                          2557999997 33221         233444333


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ... ..+|.|.++..+|+|.|.|.+.+..
T Consensus        47 ~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~   74 (86)
T smart00409       47 SGS-NSTLTISNVTPEDSGTYTCAATNSS   74 (86)
T ss_pred             cCC-eeEEEEEeeccccCeEEEEEEEcCC
Confidence            322 4489999999999999999997543

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.85  E-value=3.4e-08  Score=63.13  Aligned_cols=75  Identities=20%  Similarity=0.492  Sum_probs=49.3

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----e--eeeeee--eE-----ee
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----A--VLAIHE--HV-----IT   85 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~--~~~~~~--~~-----~~   85 (238)
                      .+.+|++++|.|.+.+...                          ..+.||+....    .  +.....  ..     ..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~--------------------------~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~   55 (104)
T cd05720           2 DAELGQKVELKCEVLNSSP--------------------------TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEEL   55 (104)
T ss_pred             cccCCCeEEEEEEecCCCC--------------------------CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccC
Confidence            3678999999999854322                          24899997532    1  111111  10     01


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...|+..... ...++|.|.+++.+|+|.|.|.+.
T Consensus        56 ~~~rf~~~~~-~~~~~L~I~~~~~sDsgtY~Ca~~   89 (104)
T cd05720          56 SSKRFSGSRS-SNSFVLTLKNFQKENEGYYFCSVA   89 (104)
T ss_pred             CCceEEEEec-CCEEEEEECCCCHHHCEEEEEEEc
Confidence            1456766443 477899999999999999999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.83  E-value=1.2e-07  Score=65.07  Aligned_cols=96  Identities=20%  Similarity=0.292  Sum_probs=62.6

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEeec--CccEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVITN--NARLSV   92 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~--~~~~~~   92 (238)
                      ..+.|.+|+++.|.|.....                         ...+++.|+|......... ....+..  .+|+..
T Consensus        23 ~~v~V~ege~VtLsCs~t~s-------------------------~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~   77 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSS-------------------------FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY   77 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCC-------------------------CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE
Confidence            35678999999999997421                         1245699999754322111 1111211  346665


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEcC
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVIP  136 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~  136 (238)
                      ........+|.|.+++.+|+|.|.|.+..-+   ..+..+-|+|+..
T Consensus        78 mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         78 LSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             eccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            4444556699999999999999999996542   3345556777653

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.82  E-value=1.4e-07  Score=59.87  Aligned_cols=46  Identities=24%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC--CCcceeeEEEE
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN--PMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v  133 (238)
                      +|.++... .....+|.|.+++.+|+|.|.|.+.+.  +.....+.|.|
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            45555432 335679999999999999999999763  22333444444

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.80  E-value=4.2e-08  Score=56.26  Aligned_cols=61  Identities=26%  Similarity=0.505  Sum_probs=42.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      +|+++.|.|.+..                          .+.+.+.|++++....           ......   .....
T Consensus         1 ~g~~~~l~C~~~~--------------------------~~~~~v~W~~~~~~~~-----------~~~~~~---~~~~~   40 (63)
T smart00408        1 EGQSVTLTCPAEG--------------------------DPVPNITWLKDGKPLP-----------ESNRLS---ASGST   40 (63)
T ss_pred             CCceEEEEeeCcc--------------------------CCCCeEEEEECCEECC-----------CCCEEe---cCCcE
Confidence            4788999999632                          3356799999765432           011111   11228


Q ss_pred             EEEcccCcccCeEEEEEEecC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      |.|.+++.+|+|.|+|.+.+.
T Consensus        41 L~i~~~~~~d~G~Y~C~~~n~   61 (63)
T smart00408       41 LTIKSVSLEDSGEYTCVAENS   61 (63)
T ss_pred             EEEeeCCcccCEEEEEEEecC
Confidence            999999999999999999764

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.80  E-value=7.9e-08  Score=61.80  Aligned_cols=78  Identities=15%  Similarity=0.390  Sum_probs=49.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eee----ee-ee-eEe---
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVL----AI-HE-HVI---   84 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~----~~-~~-~~~---   84 (238)
                      +.|.+|++++|.|.+.....                         ...+.||+....    ...    .. .. ...   
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~-------------------------~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~   55 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISE-------------------------NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEE   55 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCC-------------------------CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccc
Confidence            35789999999999864221                         224899996432    110    00 00 111   


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....|++... .....+.|+|.+++.+|+|.|.|...
T Consensus        56 ~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   92 (107)
T cd07700          56 VSQEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTV   92 (107)
T ss_pred             cccCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence            1135676543 23456789999999999999999874

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.78  E-value=1.8e-07  Score=58.26  Aligned_cols=74  Identities=24%  Similarity=0.344  Sum_probs=49.9

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      .++.+.+|+++.|.|.+.+.....+.|++.+...+..... .....++..    .....|.|..++.+|.|.|+|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            4577899999999999988766778998754322211111 111112211    1233699999999999999999975

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.78  E-value=1.3e-07  Score=61.73  Aligned_cols=84  Identities=17%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeE---
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHV---   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~---   83 (238)
                      .|..+.+.+|++++|.|.......                        ....+.||+....  +  +....   ...   
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~------------------------~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~   58 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTF------------------------TSYGVNWVRQAPGKGLEWIGFINPGGGETYYA   58 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCc------------------------ccceEEEEEECCCCCcEEEEEEecCCCceEeC
Confidence            456778999999999999754220                        0124899996431  1  11111   000   


Q ss_pred             eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....+||...... ...+.|.|.+++.+|+|.|.|.+..
T Consensus        59 ~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          59 DSVKGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             cccCCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            1113578776554 3557899999999999999998743

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.78  E-value=2.5e-07  Score=59.33  Aligned_cols=48  Identities=25%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             CccEEEEEcC--CCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          87 NARLSVTHND--ANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      .+|+.+....  .++.+|.|.+++.+|+|.|.|.+..+. .......|.|.
T Consensus        57 ~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          57 QGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            4567665432  367899999999999999999997643 23334445443

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.76  E-value=6.5e-07  Score=57.66  Aligned_cols=97  Identities=25%  Similarity=0.383  Sum_probs=56.6

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC----------ceeeeeeeeeEe---ecCcc
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD----------TKAVLAIHEHVI---TNNAR   89 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----------~~~~~~~~~~~~---~~~~~   89 (238)
                      |++++|+|.+.-....+-+               -......+.|.|++..          ............   ...+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~---------------~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gR   66 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPS---------------VITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGR   66 (117)
T ss_pred             CCCEEEeeEEEecCCCCCc---------------ccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCc
Confidence            6889999999743211100               0012335689998851          111112221111   22456


Q ss_pred             EEEEEc--CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEE
Q psy7941          90 LSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVV  134 (238)
Q Consensus        90 ~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  134 (238)
                      ..+...  ..++.+|.|.+++.+|+|.|.|.+... ........|.|.
T Consensus        67 v~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          67 VSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            666533  336779999999999999999999654 333445556554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.74  E-value=3.4e-07  Score=57.63  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v  133 (238)
                      .+|.........+.+|.|.+++.+|.|.|.|.+.+...  ....+.|.|
T Consensus        50 ~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          50 RERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cCcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            35666554444677999999999999999999987433  333444444

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.73  E-value=2.1e-07  Score=59.24  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCe----ee-EeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNK----EI-IVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~-~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+|+++.|.|.....+...+.|++....    .+ .....       +....+.....+++|.|.++..+|+|.|+|.
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~   88 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ   88 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence            467899999999654333448999994211    11 11111       1122344455567999999999999999999


Q ss_pred             eeeCCCCCccceEEEE
Q psy7941         217 AANGVPPTVSKRLMLH  232 (238)
Q Consensus       217 ~~n~~g~~~~~~~~l~  232 (238)
                      +.+.........+.|.
T Consensus        89 v~~~~~~~~~~~v~l~  104 (105)
T cd05774          89 TITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEeCCccEEEEEEEEE
Confidence            9998753434555544

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.73  E-value=1.5e-07  Score=58.54  Aligned_cols=74  Identities=16%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+. ..|..|++++|+|....                           +...+.|+|++......         
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~~---------------------------~~~~f~l~k~g~~~~~~---------   44 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGPY---------------------------GAVEYRLYREGSTFAVK---------   44 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecCC---------------------------CCCEEEEEECCCCcccc---------
Confidence            455555554 46789999999998742                           23458899876542210         


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                          ..........+.|.+++.+|+|.|+|+..+.
T Consensus        45 ----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          45 ----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence                0001122338999999999999999999764

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.71  E-value=1.2e-07  Score=56.65  Aligned_cols=75  Identities=23%  Similarity=0.423  Sum_probs=46.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+.......+. +.|+|.+....                         +.+.++|+. .......      ...
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~-------------------------~~~~~~W~~-~~~~~~~------~~~   47 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGP-------------------------PPPSISWYD-SNPSFNS------NSR   47 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEE-------------------------SSEEEEEET-EEEEEEE------EEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEcccc-------------------------CCeEEEEEe-cCCceee------eee
Confidence            46666666666655555 99999996432                         155799991 1110000      001


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....      ...+|.|.++..+|.|.|+|.+.|
T Consensus        48 ~~~~------~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   48 GSSS------SNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEE------EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eccc------eeeEEEEccCCHHhCcEEEEEEEC
Confidence            1111      122899999999999999999864

...

>smart00406 IGv Immunoglobulin V-Type

Probab=98.70  E-value=1.8e-07  Score=56.76  Aligned_cols=33  Identities=33%  Similarity=0.685  Sum_probs=27.4

Q ss_pred             CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+|+...... ...++|.|.+++.+|+|.|.|.+
T Consensus        48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            5677776654 67889999999999999999963

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.69  E-value=7e-08  Score=60.82  Aligned_cols=82  Identities=22%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             CCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeec----C------CCCCcceEE-EeeceEEEEEeecCCCeEEEEEeee
Q psy7941         152 EGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRS----N------PPSSQKVFS-VESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~----~------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      .|++++|.|.... .....+.|++.....+....    .      .....+... ..+..|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5899999998754 45568999984322221111    0      000111222 2236899999999999999999999


Q ss_pred             CCCCCccceEEEEE
Q psy7941         220 GVPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~~g~~~~~~~~l~V  233 (238)
                      ..|....+.+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            88877777887776

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.69  E-value=4.7e-07  Score=55.18  Aligned_cols=57  Identities=14%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEe-ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVI-TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.+.+.|++++..+......... ..+..+...+      .|.+......|.|.|+|.+.+..
T Consensus        12 ~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s------~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759          12 KPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVS------TLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             cCCCEEEEEECCEEccCceeeeeEecCCCeEEEEE------EEEEeCceecCCCEEEEEEcCcc
Confidence            356689999987654322111111 1112222222      78888777788899999997753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.68  E-value=8.4e-07  Score=55.35  Aligned_cols=78  Identities=10%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ..+.|.+|+.+.|.|.+...                          |+|+ +.|.+++..+.....+. +..+.    ..
T Consensus        11 ~~~~v~~gE~~~L~V~ieAY--------------------------P~p~~~~W~~~~~~l~~~~~~~-~~~~~----~~   59 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAY--------------------------PKPEHQQWIYMNRTLTNTSDHY-VKSRN----ES   59 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeC--------------------------CCCeeeEEEcCCcccCccccce-eEEec----cC
Confidence            46779999999999999643                          4554 99999765432222111 11110    01


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .......|.|.++..+|.|.|+|.+.|...
T Consensus        60 ~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          60 NNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            111334899999999999999999987643

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.67  E-value=6.3e-08  Score=60.23  Aligned_cols=72  Identities=17%  Similarity=0.343  Sum_probs=45.3

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (238)
                      .+..|.++.|.|.--.  +..                   ...+.+.++|||++..+..        .+.++.....   
T Consensus         6 ~~~~~~~~~l~Cp~~~--~f~-------------------~~~~~~~v~WYKd~~~l~~--------~~~~~~~~~~---   53 (95)
T cd05897           6 ILFTSTSGKLVCPDLS--DFT-------------------INRTDVELQWYKDSVLLDK--------DNEKFYSLKG---   53 (95)
T ss_pred             EeccccCcEEECCCHH--Hcc-------------------cCCCCCcEEEccCCEECcC--------CCcceEecCC---
Confidence            4567888999997211  110                   1234668999998755321        1122222111   


Q ss_pred             eEEEEEcccCcccCeEEEEEEecC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...|.|.++..+|+|.|+|.+.+.
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEe
Confidence            117999999999999999999764

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.66  E-value=4.4e-07  Score=58.29  Aligned_cols=82  Identities=21%  Similarity=0.460  Sum_probs=53.5

Q ss_pred             CCCcEEEEEEEcccc------CCeEEEEeCCCe-----eeEeec-C-----CCCCcceEEE----eeceEEEEEeecCCC
Q psy7941         152 EGGSAKLVCKAKGYP------TPKITWRREDNK-----EIIVRS-N-----PPSSQKVFSV----ESEVLSLTKVTRSEM  210 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p------~~~~~W~~~~~~-----~~~~~~-~-----~~~~~~~~~~----~~~~l~i~~~~~~d~  210 (238)
                      .|++++|.|.....|      ...+.|++....     .+.... .     .....+....    ...+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378999999986543      347999985321     111110 0     1111222221    134799999999999


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEE
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.|.|.+.+..+ .....+.|.|.
T Consensus        81 G~Y~C~v~~~~~-~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLE-DESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEeccc-ceEEEEEEEEE
Confidence            999999999887 44888888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.65  E-value=1.4e-07  Score=56.34  Aligned_cols=57  Identities=37%  Similarity=0.690  Sum_probs=41.1

Q ss_pred             EEEEEEEcccc-CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         156 AKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       156 ~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      +.|.|.+.+.+ .+.+.|+. .......      .........+.|.+..+..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~-~~~~~~~------~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYD-SNPSFNS------NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEET-EEEEEEE------EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEe-cCCceee------eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999999877 77999991 1111110      0122344556799999999999999999987

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.63  E-value=6.3e-07  Score=57.76  Aligned_cols=82  Identities=17%  Similarity=0.354  Sum_probs=52.8

Q ss_pred             CCCcEEEEEEEcccc------------CCeEEEEeCCC--e-eeE-eecC-----CCCCcceEE------EeeceEEEEE
Q psy7941         152 EGGSAKLVCKAKGYP------------TPKITWRREDN--K-EII-VRSN-----PPSSQKVFS------VESEVLSLTK  204 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p------------~~~~~W~~~~~--~-~~~-~~~~-----~~~~~~~~~------~~~~~l~i~~  204 (238)
                      .|++++|.|......            .+.|.|++...  + .+. ....     .....+...      ..+..|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999986422            35899998421  1 111 1110     011112211      1356899999


Q ss_pred             eecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         205 VTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       205 ~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      ++.+|+|.|+|.+.+... ..+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIE-DNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence            999999999999997766 44777777775

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.62  E-value=3.4e-07  Score=58.82  Aligned_cols=83  Identities=22%  Similarity=0.453  Sum_probs=54.3

Q ss_pred             CCCcEEEEEEEcccc------CCeEEEEeCC--C--e-eeEe-ecC-----CCCCcceEE----EeeceEEEEEeecCCC
Q psy7941         152 EGGSAKLVCKAKGYP------TPKITWRRED--N--K-EIIV-RSN-----PPSSQKVFS----VESEVLSLTKVTRSEM  210 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p------~~~~~W~~~~--~--~-~~~~-~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  210 (238)
                      .|+++.|.|.....+      ...+.|++..  .  . .+.. ...     .........    ....+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999986543      4589999852  1  1 1111 110     001111111    1345899999999999


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      |.|.|.+.+..+ .....+.|.|..
T Consensus        81 G~Y~C~v~~~~~-~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIE-DEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCC-ceEEEEEEEEEE
Confidence            999999998766 448888888863

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.62  E-value=2.2e-07  Score=57.86  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=53.3

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC-CC-CCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG-VP-PTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~-~g-~~~  225 (238)
                      ..+..|++++|.|... .+...+.|++++. ......      .........+.|..+..+|+|.|+|.+.+. .+ +..
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~-~~~~~~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~   82 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGS-TFAVKK------PPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEP   82 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCC-Cccccc------cCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCC
Confidence            3578899999999875 5667899999543 221110      001223346899999999999999999986 33 344


Q ss_pred             cceEEEEE
Q psy7941         226 SKRLMLHV  233 (238)
Q Consensus       226 ~~~~~l~V  233 (238)
                      +..+.|.|
T Consensus        83 Sd~lel~V   90 (91)
T cd05751          83 SDPLELVV   90 (91)
T ss_pred             CCcEEEEe
Confidence            66677665

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.61  E-value=7.7e-07  Score=57.77  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CceeecCCCcEEEEEEEccc----cCCeEEEEeCC-Cee----e-EeecC-------CCCCcceE-----EEeeceEEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY----PTPKITWRRED-NKE----I-IVRSN-------PPSSQKVF-----SVESEVLSLT  203 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~~-~~~----~-~~~~~-------~~~~~~~~-----~~~~~~l~i~  203 (238)
                      ..+.+..|+.+.|.|.....    +...+.|.... +..    + .....       .....+..     ...+.++.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            44567889999999998553    23489994311 100    0 00000       00111221     1234589999


Q ss_pred             EeecCCCeEEEEEeeeCCC-CCccceEEEE
Q psy7941         204 KVTRSEMGAYQCIAANGVP-PTVSKRLMLH  232 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n~~g-~~~~~~~~l~  232 (238)
                      +++.+|.|.|+|.+.|.-+ ......+.|.
T Consensus        86 nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             cCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            9999999999999999865 2323444443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.58  E-value=1e-06  Score=55.93  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCcEEEEEEEcccc---CCeEEEEeCCCeeeEeecC--C--------CCCcceEE------EeeceEEEEEeecCCCeEE
Q psy7941         153 GGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSN--P--------PSSQKVFS------VESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       153 g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~~~~--~--------~~~~~~~~------~~~~~l~i~~~~~~d~G~y  213 (238)
                      |+++.|.|......   ...+.|++...........  .        ....+...      .....|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999985321   2268998854322211100  0        00112111      1124799999999999999


Q ss_pred             EEEeeeCCCCCccceEEEEE
Q psy7941         214 QCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       214 ~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +|.+.+..+. ....+.|.|
T Consensus        81 ~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEecCCcE-EEEEEEEEE
Confidence            9999987774 466777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.57  E-value=4.4e-07  Score=55.18  Aligned_cols=66  Identities=15%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...+..|+.+.|.|...+. .+.+.|++ ++..+...      ... .....-|.|..+..+|+|.|.|.+. +.|
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~------~r~-~~~~~GLlI~~~~~~dsG~Y~C~s~-E~g   70 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQ------FSY-RVGTDGLLILVTSPEHSGTYRCYSE-EEG   70 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCC------cce-EEeCCCCEEEECCHhhCEEEEEEEe-cCC
Confidence            4568889999999998764 67999999 44443211      122 2233348899999999999999987 445

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.56  E-value=4.5e-07  Score=58.53  Aligned_cols=77  Identities=16%  Similarity=0.261  Sum_probs=51.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCe--e-eEeec-CC---CCCcceEEE-----eeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK--E-IIVRS-NP---PSSQKVFSV-----ESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~--~-~~~~~-~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+++.|.|.+.+.+...+.|++....  + ..... ..   ....+....     ....|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            4456789999999999998777779999984321  1 11111 00   011122111     24489999999999999


Q ss_pred             EEEEeeeCC
Q psy7941         213 YQCIAANGV  221 (238)
Q Consensus       213 y~C~~~n~~  221 (238)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.55  E-value=2.5e-06  Score=51.33  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=40.3

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV  134 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~  134 (238)
                      ++|.+.|+|++++.++.... ........++...+      +|.|......|...|+|++.+...  ......|+|+
T Consensus        11 SkP~A~I~W~k~~~~l~~~~-~~~~~~~~~~t~~S------~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883          11 SKPAATIRWFKGNKELTGKS-TVEETWSRMFTVTS------QLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             CCCCCEEEEEECCEECcCcc-cceeccCCCcEEEE------EEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            46788999999876653321 11112233344443      788866666667799999977532  2223345554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.55  E-value=6.9e-07  Score=54.40  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC-CCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN-PPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.|.|.+.+ +|.+.+.|++ ++..+..... ... ..... ...+.|.+.....++.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~~~~~~~~~~~~~~~-~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFK-GDKELKGVKLKEEDENGKTF-TVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEE-CCEEccCceeeEecCCCCEE-EEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999966 7989999999 4554432110 000 01111 11223444433444455999999998753

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.52  E-value=5.9e-07  Score=58.09  Aligned_cols=76  Identities=14%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee--eEeecCC------C-CCcceEE----EeeceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE--IIVRSNP------P-SSQKVFS----VESEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~--~~~~~~~------~-~~~~~~~----~~~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|+++.|.|.+.+ +.+.+.|++...  .+  +......      . ...+...    .....|.|.+++.+|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            44567899999999999987 677899998532  11  1100000      0 0111111    123479999999999


Q ss_pred             CeEEEEEeeeCC
Q psy7941         210 MGAYQCIAANGV  221 (238)
Q Consensus       210 ~G~y~C~~~n~~  221 (238)
                      +|.|.|.+.+..
T Consensus        84 sg~Y~Ca~~~~~   95 (110)
T cd05899          84 SAVYLCASSLGG   95 (110)
T ss_pred             CEEEEEEeeCCC
Confidence            999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.50  E-value=2.3e-06  Score=55.23  Aligned_cols=83  Identities=22%  Similarity=0.397  Sum_probs=53.3

Q ss_pred             CCCcEEEEEEEcccc----------CCeEEEEeCCC-ee-e-E-eecC-----CCCCcceEE------EeeceEEEEEee
Q psy7941         152 EGGSAKLVCKAKGYP----------TPKITWRREDN-KE-I-I-VRSN-----PPSSQKVFS------VESEVLSLTKVT  206 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p----------~~~~~W~~~~~-~~-~-~-~~~~-----~~~~~~~~~------~~~~~l~i~~~~  206 (238)
                      .|++++|.|.....+          ...+.|++... .. . . ....     .....+...      .....|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999986533          25799998531 11 1 1 1110     011112111      123579999999


Q ss_pred             cCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         207 RSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       207 ~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .+|+|.|.|.+..... ...+.+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~-~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIE-DEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence            9999999999998665 447888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.48  E-value=3.6e-06  Score=51.22  Aligned_cols=58  Identities=21%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.+.|++++..+...........++.|...+      .|.+......+.+.|+|++.+...
T Consensus        12 ~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s------~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761          12 KPAATIRWFKGDKELKGVKLKEEDENGKTFTVTS------SLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             CcCCeEEEEECCEEccCceeeEecCCCCEEEEEE------EEEEEcchhhCCCEEEEEEeChhc
Confidence            4567899999876553211111112233444433      566655555566799999977543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.47  E-value=4.3e-06  Score=54.41  Aligned_cols=88  Identities=17%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             CCceeecCCCcEEEEEEEcccc----CCeEEEEeC---CCee--eEeecCC-------CCCcceEE-----EeeceEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP----TPKITWRRE---DNKE--IIVRSNP-------PSSQKVFS-----VESEVLSLT  203 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~---~~~~--~~~~~~~-------~~~~~~~~-----~~~~~l~i~  203 (238)
                      +..+.+.+|+++.|.|.....+    ...+.|++.   ++..  +......       ....+...     ..+..|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4456788999999999975422    236999752   1221  1111100       00011111     123479999


Q ss_pred             EeecCCCeEEEEEeeeCCCC-CccceEEEE
Q psy7941         204 KVTRSEMGAYQCIAANGVPP-TVSKRLMLH  232 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~  232 (238)
                      +++.+|+|.|+|.+.|..+. .....+.|.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            99999999999999987653 223455554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.46  E-value=2.8e-06  Score=51.76  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=42.9

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC--CCccceE
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP--PTVSKRL  229 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g--~~~~~~~  229 (238)
                      +.|.|.+.| +|.+.|+|++ ++..+.....   ....... ....+.|.+.....++...|+|.+.|...  ...+.+.
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~~~~~~~~~~~~~t-~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~   79 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRK-GDQELEGAPTSVLEDGNGKT-FTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQ   79 (83)
T ss_pred             EEEEEEecCccCCCEeEEEE-CCEECCCcceeEEECCCCCE-EEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEE
Confidence            689999977 7989999999 5544322110   0000011 11112344433344455599999999874  2444555


Q ss_pred             EEEE
Q psy7941         230 MLHV  233 (238)
Q Consensus       230 ~l~V  233 (238)
                      .|+|
T Consensus        80 ~~~~   83 (83)
T cd07705          80 RIEV   83 (83)
T ss_pred             EeeC
Confidence            5543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.46  E-value=3.9e-06  Score=54.80  Aligned_cols=89  Identities=16%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             CCceeecCCCcEEEEEEEcccc----CCeEEEEeCCC-----eeeEee-cC-------CCCCcceEEE-----eeceEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP----TPKITWRREDN-----KEIIVR-SN-------PPSSQKVFSV-----ESEVLSL  202 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~~~-----~~~~~~-~~-------~~~~~~~~~~-----~~~~l~i  202 (238)
                      +..+.+..|+.+.|.|......    ...+.|++...     ..+... ..       .....+....     .+..|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            3446678999999999885422    24699986322     111110 00       0000111111     1247999


Q ss_pred             EEeecCCCeEEEEEeeeCCCCCc-cceEEEEE
Q psy7941         203 TKVTRSEMGAYQCIAANGVPPTV-SKRLMLHV  233 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~n~~g~~~-~~~~~l~V  233 (238)
                      .+++.+|+|.|.|.+.|.-+... ...+.|.|
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            99999999999999998765321 34555543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.44  E-value=1.6e-06  Score=55.46  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             eecCCCcEEEEEEEccc-cCCeEEEEeCCCe----eeEeecCC------CCCcceEEE-----eeceEEEEEeecCCCeE
Q psy7941         149 MVPEGGSAKLVCKAKGY-PTPKITWRREDNK----EIIVRSNP------PSSQKVFSV-----ESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~----~~~~~~~~------~~~~~~~~~-----~~~~l~i~~~~~~d~G~  212 (238)
                      .+.+|+.+.|.|.+.+. +...+.|++....    .+......      ....+....     ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999875 6678999984331    11111100      011111111     23479999999999999


Q ss_pred             EEEEeeeCCC
Q psy7941         213 YQCIAANGVP  222 (238)
Q Consensus       213 y~C~~~n~~g  222 (238)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999997664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=98.44  E-value=4.9e-06  Score=53.03  Aligned_cols=83  Identities=14%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------eeEeecC
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------EHVITNN   87 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~   87 (238)
                      .+....+..|+++.|.|.++...-   +                    ....+.|+|+.........      .......
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~---s--------------------~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~   60 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGF---S--------------------KEFRASLLKGADSAVEVCAVTGNMSNQLQTSL   60 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCcc---c--------------------cEEEEEEEEeCCCCcEEEEEEeCCCccccccC
Confidence            445667889999999999964211   1                    0135889986433211111      1111224


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEE
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .|+..... ..+..+|+|.+++.+|++.|.|..
T Consensus        61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence            56655443 336779999999999999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.40  E-value=3e-06  Score=53.53  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             CcEEEEEEEcccc---CCeEEEEeCCCe---eeEeecC-------CCCCcceEEE----eeceEEEEEeecCCCeEEEEE
Q psy7941         154 GSAKLVCKAKGYP---TPKITWRREDNK---EIIVRSN-------PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       154 ~~~~l~C~~~~~p---~~~~~W~~~~~~---~~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      +++.|.|.....+   ...+.|++....   .+.....       .....+....    ....|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999986643   447999985432   1110000       0001111111    245899999999999999999


Q ss_pred             eee-CCCCCccceEEEEE
Q psy7941         217 AAN-GVPPTVSKRLMLHV  233 (238)
Q Consensus       217 ~~n-~~g~~~~~~~~l~V  233 (238)
                      +.. +.| ...+.+.|.|
T Consensus        81 v~~~~~g-~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQG-NRQKVTTLTV   97 (98)
T ss_pred             EEeCCCC-cEEEEEEEEe
Confidence            976 456 4477777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.40  E-value=1.9e-06  Score=55.92  Aligned_cols=89  Identities=21%  Similarity=0.354  Sum_probs=55.3

Q ss_pred             CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCC---eeeEe-ecC--------CCCCcceEEEee-----ceEEEEEee
Q psy7941         145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDN---KEIIV-RSN--------PPSSQKVFSVES-----EVLSLTKVT  206 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~---~~~~~-~~~--------~~~~~~~~~~~~-----~~l~i~~~~  206 (238)
                      +..+.+..|+++.|.|... ......+.|++...   ..... ...        ...........+     ..|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            3446788999999999988 44556899998433   11111 000        111122222222     369999999


Q ss_pred             cCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         207 RSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       207 ~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+|+|.|.|.+...........+.|.|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999999873323344555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.39  E-value=1.6e-06  Score=55.63  Aligned_cols=76  Identities=17%  Similarity=0.341  Sum_probs=48.4

Q ss_pred             CCceeecCCCcEEEEEEEcccc-CCeEEEEeCCC--e--eeEeecCC--C-CCcceEE---EeeceEEEEEeecCCCeEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDN--K--EIIVRSNP--P-SSQKVFS---VESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~--~--~~~~~~~~--~-~~~~~~~---~~~~~l~i~~~~~~d~G~y  213 (238)
                      +..+.+.+|+++.|.|.+.+.. ...+.|++...  .  .+......  . .......   .....|.|.+++.+|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            4456789999999999987654 56899997431  1  11111100  0 0011111   1223699999999999999


Q ss_pred             EEEeeeC
Q psy7941         214 QCIAANG  220 (238)
Q Consensus       214 ~C~~~n~  220 (238)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9999754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.38  E-value=1.1e-05  Score=55.76  Aligned_cols=90  Identities=17%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             CceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC----CC-CCcceEE----EeeceEEEEEeecCCCeEEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN----PP-SSQKVFS----VESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~----~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      ..+.+.+|+++.|.|... +...+.+.|.+.++....-...    .. ...+...    .....|.|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            345688999999999984 5567789999854322211111    00 0111111    134589999999999999999


Q ss_pred             EeeeC-CCCCccceEEEEEEe
Q psy7941         216 IAANG-VPPTVSKRLMLHVHC  235 (238)
Q Consensus       216 ~~~n~-~g~~~~~~~~l~V~~  235 (238)
                      ...-- .|...+.+..|.|..
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEc
Confidence            99753 353557777787764

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.38  E-value=1.6e-06  Score=54.24  Aligned_cols=74  Identities=12%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.+... ....|..|++++|+|.... .                          ...+.|+|++........      ..
T Consensus         2 P~l~a~-p~~vV~~G~~VTL~C~~~~-~--------------------------~~~f~l~k~g~~~~~~~~------~~   47 (94)
T cd05711           2 PFLSAH-PSPVVPSGENVTLQCHSDI-R--------------------------FDRFILYKEGRSKPVLHL------YE   47 (94)
T ss_pred             CEEEec-CCCccCCCCeEEEEEecCC-C--------------------------CCEEEEEECCCCCCceec------cc
Confidence            444443 3556779999999998753 1                          234899998754221100      00


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                          .........+.|..++.+|+|.|.|...
T Consensus        48 ----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          48 ----KHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             ----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence                0011123388999999999999999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.38  E-value=9e-06  Score=51.19  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             ceEEEEEeecCCCeEEEEEeee-CCCCCccceEEEEE
Q psy7941         198 EVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHV  233 (238)
Q Consensus       198 ~~l~i~~~~~~d~G~y~C~~~n-~~g~~~~~~~~l~V  233 (238)
                      .+|.|.+++.+|.|.|+|.+.+ +.| ..+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g-~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTG-NRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence            6899999999999999999999 567 4578888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.34  E-value=2.5e-06  Score=53.92  Aligned_cols=72  Identities=11%  Similarity=0.294  Sum_probs=45.7

Q ss_pred             eecCCCcEEEEEEEccc--cCCeEEEEeCCCe--e--eEeecC---CCCCcceEE---EeeceEEEEEeecCCCeEEEEE
Q psy7941         149 MVPEGGSAKLVCKAKGY--PTPKITWRREDNK--E--IIVRSN---PPSSQKVFS---VESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~--~--~~~~~~---~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+|+++.|.|...+.  ....+.|++....  +  +.....   .....+...   .....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998764  4567999984321  1  111110   001111111   1233699999999999999999


Q ss_pred             eeeC
Q psy7941         217 AANG  220 (238)
Q Consensus       217 ~~n~  220 (238)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            9754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.34  E-value=7.2e-06  Score=51.66  Aligned_cols=80  Identities=23%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             CCcEEEEEEEccccC-CeEEEEeCCCe---eeEee---cC----CCCCcceEE----EeeceEEEEEeecCCCeEEEEEe
Q psy7941         153 GGSAKLVCKAKGYPT-PKITWRREDNK---EIIVR---SN----PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       153 g~~~~l~C~~~~~p~-~~~~W~~~~~~---~~~~~---~~----~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~  217 (238)
                      |++++|.|....... -.+.|++..+.   .+...   ..    .....+...    .....|.|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654322 37999985332   11100   00    000111111    12457999999999999999998


Q ss_pred             ee-CCCCCccceEEEEE
Q psy7941         218 AN-GVPPTVSKRLMLHV  233 (238)
Q Consensus       218 ~n-~~g~~~~~~~~l~V  233 (238)
                      .. +.| ..+..+.|.|
T Consensus        81 ~~~p~g-~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDG-SKSGTMCLTV   96 (97)
T ss_pred             EeCCCC-CeeeEEEEEE
Confidence            75 456 5577777877

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.33  E-value=1.4e-05  Score=49.44  Aligned_cols=84  Identities=14%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-eecC
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-ITNN   87 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~   87 (238)
                      |.|......+... |+.+.+.|.+.+                         +.|++.|.|+.++........... ....
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~-------------------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~   54 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSG-------------------------GYPPPQITWYLDGGPVVASNTTQSSSPDN   54 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEE-------------------------EBS-EEEEEEETTCEECEEEEEEEEETTT
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCC-------------------------eECCeEEEEEECCCceeeeeeeeeeccCC
Confidence            3444444444433 779999999863                         456889999998877622222222 2334


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.+...+      +|.+..-...+...++|.+.+...
T Consensus        55 ~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   55 GLFTVSS------TLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TTEEEEE------EEEEETTGGGTTEEEEEEEEETTC
T ss_pred             CcceEEE------EEEEEcChHHCCeEEEEEEECCcc
Confidence            4444443      677765445566799999977543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.32  E-value=4.5e-06  Score=54.52  Aligned_cols=75  Identities=19%  Similarity=0.371  Sum_probs=49.0

Q ss_pred             CCceeecCCCcEEEEEEEcc--ccCCeEEEEeCCC--ee--eEeecCC--------CCCcceEE--E---eeceEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRREDN--KE--IIVRSNP--------PSSQKVFS--V---ESEVLSLTKV  205 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~--~~--~~~~~~~--------~~~~~~~~--~---~~~~l~i~~~  205 (238)
                      +..+.+.+|+++.|.|.+.+  .+.+.+.|++...  .+  +......        ....+...  .   ....|.|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44567889999999999877  6777999998421  11  1110000        00111111  1   2347999999


Q ss_pred             ecCCCeEEEEEeee
Q psy7941         206 TRSEMGAYQCIAAN  219 (238)
Q Consensus       206 ~~~d~G~y~C~~~n  219 (238)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999974

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.31  E-value=3.5e-06  Score=52.85  Aligned_cols=74  Identities=18%  Similarity=0.375  Sum_probs=48.8

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEEEEEcCCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLSVTHNDAN   98 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   98 (238)
                      ..|+.+.|.|.+.+..+.                        .+.++|++++........  ......++.+...+    
T Consensus        11 ~~~~~~~L~C~a~g~~P~------------------------~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s----   62 (95)
T cd00098          11 LLGGSVTLTCLATGFYPP------------------------DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSS----   62 (95)
T ss_pred             HcCCCeEEEEEEeeEECC------------------------CcEEEEEECCEECCCceeccccccCCCCCEEEEE----
Confidence            468999999999754211                        346999998766543321  22223344555544    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.+......|.|.|+|++.+...
T Consensus        63 --~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          63 --QLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             --EEEECHHHhCCCCCEEEEEEeCCC
Confidence              677766666799999999977543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.30  E-value=2.1e-05  Score=53.12  Aligned_cols=87  Identities=14%  Similarity=0.294  Sum_probs=54.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeee--------
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVL--------   77 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~--------   77 (238)
                      .+|.+...+.......|+.+.|.|.+.+.                         .|. +.+.|++++.....        
T Consensus        37 ~~P~v~~~~~~~~~~~~~~~~L~C~a~g~-------------------------~P~~~~i~W~~~g~~~~~~~~~~~~~   91 (139)
T cd05771          37 EPPRVRLSLEKLVSMIEEPQTLICHIAGY-------------------------YPLDVQVEWTREPPGDSPPPVSLSNV   91 (139)
T ss_pred             cCCceEEeCCCceeecCCcEEEEEEECCC-------------------------CCCCeEEEEEECCCCCccceeccCCe
Confidence            35666555555555578999999999642                         222 47999998654211        


Q ss_pred             eeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          78 AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .........++.|.+.+      .|.+......+.+.|+|++.+...
T Consensus        92 ~~~~~~~~~dgt~~~~s------~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          92 SFSSHRQHQDGTYSLSS------HLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             EecceEeCCCCCEEEEE------EEEecCCccCCCCEEEEEEEcCCC
Confidence            11112233455666655      788876665667799999976543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.30  E-value=2.6e-06  Score=53.44  Aligned_cols=71  Identities=24%  Similarity=0.448  Sum_probs=43.6

Q ss_pred             cCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|..+.|.|.+.|+ |. ..++|++ ++..+.....   ............+.|.+......+.+.|+|.|.|...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            357899999999996 64 5899999 5544422211   0001111111223455555555688999999999765

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.29  E-value=1.2e-05  Score=50.31  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC---C-C
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV---P-P  223 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~---g-~  223 (238)
                      ..+..|++++|.|.... +...+.|++++........ ...   ........+.|..++.+|+|.|.|......   . +
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~-~~~---~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS   84 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL-YEK---HHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWS   84 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec-ccc---cCCeEEEEEEecCCCcccCEEEEEEEECCCCCcccc
Confidence            45778999999998754 4568999995543211000 000   001122368999999999999999975322   1 2


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                      ..+..+.|.|
T Consensus        85 ~~Sdpl~l~V   94 (94)
T cd05711          85 APSDPLKIVV   94 (94)
T ss_pred             CCCCCeEEeC
Confidence            4455655543

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.26  E-value=1.4e-05  Score=48.23  Aligned_cols=62  Identities=21%  Similarity=0.432  Sum_probs=46.4

Q ss_pred             eecCCCcEEEEEEEcccc--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         149 MVPEGGSAKLVCKAKGYP--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      .+..|++++|.|.....+  .+.++|...++.....          .......|.+..+...|+|.++|.+...
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----------~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----------LNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----------ccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            467899999999985534  4599999866543321          1234457899999999999999999854

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.26  E-value=3e-05  Score=47.18  Aligned_cols=58  Identities=19%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEeecC-ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVITNN-ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.|.|++++..+...........+ ..|....      .|.+......|...|+|++.+...
T Consensus        12 ~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s------~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705          12 KPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSS------SVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             cCCCEeEEEECCEECCCcceeEEECCCCCEEEEEE------EEEEEecchhCCCEEEEEEECccc
Confidence            456789999987654322111111112 2343333      676655666677899999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.24  E-value=1.6e-05  Score=50.99  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=51.2

Q ss_pred             CCcEEEEEEEcccc-------CCeEEEEeCC----CeeeE-ee--cC-----CCCCcceEEE------eeceEEEEEeec
Q psy7941         153 GGSAKLVCKAKGYP-------TPKITWRRED----NKEII-VR--SN-----PPSSQKVFSV------ESEVLSLTKVTR  207 (238)
Q Consensus       153 g~~~~l~C~~~~~p-------~~~~~W~~~~----~~~~~-~~--~~-----~~~~~~~~~~------~~~~l~i~~~~~  207 (238)
                      |+++.|.|...-.|       .+.+.|.+..    ..... ..  ..     ..-..+....      .+..|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67899999965322       3589998742    11111 10  00     1111122221      234899999999


Q ss_pred             CCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         208 SEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       208 ~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +|+|.|.|.+..... .....+.|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~-~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGIN-DEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence            999999999998654 44778888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.23  E-value=2e-05  Score=49.95  Aligned_cols=78  Identities=21%  Similarity=0.371  Sum_probs=48.2

Q ss_pred             cEEEEEEEcccc---CCeEEEEeCCCe----eeEe-ec--C----CCCCcceEE-----EeeceEEEEEeecCCCeEEEE
Q psy7941         155 SAKLVCKAKGYP---TPKITWRREDNK----EIIV-RS--N----PPSSQKVFS-----VESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       155 ~~~l~C~~~~~p---~~~~~W~~~~~~----~~~~-~~--~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      ++.|.|.....+   ...+.|++....    .+.. ..  .    .+...+...     ..+..|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            589999885433   338999984321    1111 10  1    100011111     124589999999999999999


Q ss_pred             Eeee-CCCCCccceEEEEE
Q psy7941         216 IAAN-GVPPTVSKRLMLHV  233 (238)
Q Consensus       216 ~~~n-~~g~~~~~~~~l~V  233 (238)
                      .+.+ +.| .....+.|.|
T Consensus        82 ~v~~~p~g-~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAG-NFEAELVLTV   99 (100)
T ss_pred             EEEeCCCC-CeeeEEEEEe
Confidence            9998 556 4477777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.22  E-value=2.4e-05  Score=47.57  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.|.|.+.| +|...++|++ ++..+.....  ............+.|.+..-...+...|+|.+.|..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~k-ng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFK-NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEE-CCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            589999987 8888999999 5554422110  0000111112223455543333344499999999875

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.22  E-value=1.4e-05  Score=50.09  Aligned_cols=71  Identities=18%  Similarity=0.383  Sum_probs=45.6

Q ss_pred             ecCCCcEEEEEEEcc-ccCCe--EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPP  223 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~  223 (238)
                      +.+|+.++|.|.+.| .|.+.  +.|++ ++..+........... ......++.+ .+.++|.| .|+|.|.+..+.
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~-~~~~~stlt~-~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKS-PVNAPATITI-TVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCC-CceeEEEEEE-ecchhhCCcEEEEEEEeccCc
Confidence            568999999999977 88886  79999 5555533221110001 1112224444 46677888 999999998763

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.20  E-value=6.8e-05  Score=48.41  Aligned_cols=37  Identities=24%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.+|.|.+++.+|.|.|.|.+.+... .....+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~-~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIE-DTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCc-ccEEEEEEEEE
Confidence            45899999999999999999998876 44788888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=3.9e-05  Score=47.92  Aligned_cols=79  Identities=18%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             CcEEEEEEEccc-cCCeEEEEeCCC---eeeEeecC-------CCCCcceEE----EeeceEEEEEeecCCCeEEEEEee
Q psy7941         154 GSAKLVCKAKGY-PTPKITWRREDN---KEIIVRSN-------PPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       154 ~~~~l~C~~~~~-p~~~~~W~~~~~---~~~~~~~~-------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      +++.|.|..... ....++|.+..+   ..+..-..       ..-..+...    ..+.+|.|.++..+|.|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            368999998642 334899987432   11111100       011111111    225589999999999999999986


Q ss_pred             e-CCCCCccceEEEEE
Q psy7941         219 N-GVPPTVSKRLMLHV  233 (238)
Q Consensus       219 n-~~g~~~~~~~~l~V  233 (238)
                      + +.| ..+.+..|.|
T Consensus        81 tfP~G-~~~~~~~l~~   95 (96)
T cd05887          81 TFPLG-NTQSSTTVTV   95 (96)
T ss_pred             eCCCC-CeeEEEEEEE
Confidence            5 557 5577777776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.16  E-value=3.4e-05  Score=46.92  Aligned_cols=58  Identities=22%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             CCCceEEEEeCCceeeeeeeeeE-eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHV-ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.++|+|++..+........ ...++.|...+      .|.+..-...+...|+|++.+...
T Consensus        12 ~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s------~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884          12 KPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSS------TLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             cCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEE------EEEEEcccccCCCEEEEEEechhc
Confidence            45678999998776432221111 12334454444      677765555667799999977543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.12  E-value=3.2e-05  Score=48.55  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=44.8

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce--EEEEeCCceeeeeeeeeEeecCccE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK--VAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      ..+....+.+|+.++|+|.+.+.                         .|.++  |.||+++..+.......  ......
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~-------------------------~P~a~L~i~W~rG~~~l~~~~~~~--~~~~~~   58 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGV-------------------------APRQNLTVVLLRGNETLSRQPFGD--NTKSPV   58 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCc-------------------------CCCCcEEEEEeeCCEEcccceecc--ccCCCc
Confidence            34444457899999999999753                         44555  69999876653211100  001111


Q ss_pred             EEEEcCCCeEEEEEcccCcccCe-EEEEEEecC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRG-YYMCQVNTN  122 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~  122 (238)
                      .      ...+|.+. +..+|.| .|+|++...
T Consensus        59 ~------~~stlt~~-~~r~D~g~~~sC~A~l~   84 (100)
T cd05755          59 N------APATITIT-VDREDHGANFSCETELD   84 (100)
T ss_pred             e------eEEEEEEe-cchhhCCcEEEEEEEec
Confidence            1      12266665 4455555 999999654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.11  E-value=2.2e-05  Score=49.56  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             eeecCCCcEEEEEEEcc-ccCCeEEEEeCCCee---eEeecC---CCCCcceEEE-----eeceEEEEEeecCCCeEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTPKITWRREDNKE---IIVRSN---PPSSQKVFSV-----ESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~---~~~~~~---~~~~~~~~~~-----~~~~l~i~~~~~~d~G~y~C  215 (238)
                      +.+.+|++++|.|.... .+...+.|++.....   +.....   .....+....     ....|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35678999999999765 455689999854211   111000   1111112111     12379999999999999999


Q ss_pred             EeeeCC
Q psy7941         216 IAANGV  221 (238)
Q Consensus       216 ~~~n~~  221 (238)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            998654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.08  E-value=6e-05  Score=48.51  Aligned_cols=70  Identities=14%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             ecCCCcEEEEEEEcc-ccC-CeEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPT-PKITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      ...|+.++|.|.+.| +|. ..++|++ ++..+......   ...... ....+.|.+. ....|.| .|+|.+.|...
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~~~~~~~~p~~d~~t-y~~~S~L~~~-~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELSAEQPNITPEGDSVS-YNVTSTVQVK-LTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECcccccceeeCCCCCc-EEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence            446788999999988 675 4999999 55554321110   011101 1122234444 3344545 59999999763

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.07  E-value=3.2e-05  Score=49.63  Aligned_cols=72  Identities=22%  Similarity=0.430  Sum_probs=44.3

Q ss_pred             eecCCCcEEEEEEEccc-cCCeEEEEeCCCe--e------eEeecC------CCC-CcceE-E-E---eeceEEEEEeec
Q psy7941         149 MVPEGGSAKLVCKAKGY-PTPKITWRREDNK--E------IIVRSN------PPS-SQKVF-S-V---ESEVLSLTKVTR  207 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~--~------~~~~~~------~~~-~~~~~-~-~---~~~~l~i~~~~~  207 (238)
                      .+..|++++|.|...+. ....+.|++....  +      +.....      ... ..... . .   ....|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998663 3458999984332  0      100000      000 11111 1 1   123699999999


Q ss_pred             CCCeEEEEEeeeC
Q psy7941         208 SEMGAYQCIAANG  220 (238)
Q Consensus       208 ~d~G~y~C~~~n~  220 (238)
                      +|+|.|.|...+.
T Consensus        82 ~Dsg~YyCa~~~~   94 (107)
T cd07700          82 EDSGTYFCMTVGS   94 (107)
T ss_pred             HHCEEEEEeEcCC
Confidence            9999999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.07  E-value=7.9e-05  Score=44.98  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=45.1

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (238)
                      .+..|++++|+|.....                        ..|.+.++|+..+.+....     .           ..+
T Consensus        10 ~lL~G~sLtLtl~~~s~------------------------s~p~~~i~w~~P~n~~~~~-----~-----------~~~   49 (88)
T cd07694          10 HVLSGTNLTLTLHGSSN------------------------SLPAFKVEWRGPGNKSKQI-----L-----------NQD   49 (88)
T ss_pred             eeecCCcEEEEEecCCC------------------------CCCCccEEEeCCCCcccee-----c-----------cCC
Confidence            67899999999998431                        1234479999976652210     0           111


Q ss_pred             eEEEEEcccCcccCeEEEEEEecC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .-+|.+..+...|+|.++|.+...
T Consensus        50 ~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          50 KKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             ccEEEeceeCcccCCEEEEEEEEC
Confidence            228999999999999999999543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.06  E-value=3.6e-05  Score=48.19  Aligned_cols=82  Identities=27%  Similarity=0.417  Sum_probs=48.9

Q ss_pred             ccCceeEEEecCCEEEEeEEecC-CCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEeecCccE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNL-GGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVITNNARL   90 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~   90 (238)
                      .+|....+..|+.++|.|.+.+. .+.                        ...++|+|+++...... .......++.|
T Consensus         4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~------------------------~i~v~W~r~~~~~~~~~~~~~~~~~dgty   59 (96)
T cd07696           4 LPPSPKQLLLTKSVKLTCLVTNLTSPE------------------------GVNVTWTRGSGEPVKASIQPPESHNNATL   59 (96)
T ss_pred             cCcCHHHhccCCCeEEEEEEeCCCCCC------------------------CcEEEEEECCeEeeeEEecccccCCCCCE
Confidence            34444456678999999999875 222                        44689999875432211 11122334455


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .+..      .|.+..-...+...|.|.+.+.+.
T Consensus        60 ~~~s------~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          60 SVTS------TLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             EEEE------EEEeCHHHccCCCcEEEEEECCCC
Confidence            5544      565554333345689999987543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=98.02  E-value=1.9e-06  Score=70.93  Aligned_cols=187  Identities=20%  Similarity=0.310  Sum_probs=105.9

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      ..|.|+..++...+..|..+.|+|.++.....++                      ...-.|..+......      ...
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~----------------------kc~~~wv~~~~~~~~------~~~   74 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRF----------------------KCNSEWVHQSRHEKL------EGT   74 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCccccccc----------------------ccChhhhcCccceee------ecc
Confidence            4678888999999999999999999865333321                      112345554322111      111


Q ss_pred             Cc--cEEEEEcCCCeEEEEEcccCcccCe---EEEEEEe--cC-CC-cceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941          87 NA--RLSVTHNDANTWTLNIRSVRREDRG---YYMCQVN--TN-PM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        87 ~~--~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~--~~-~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      +.  .....     .....|.+...++.|   .|+|+--  .. +. .+..+.+++.+- ...+...+.-..+..+..+.
T Consensus        75 d~tsg~~~~-----~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~-rk~f~~~p~~q~V~~~s~~~  148 (909)
T KOG1480|consen   75 DETSGLGVR-----EVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYL-RKHFEQSPVGQEVQEETTLQ  148 (909)
T ss_pred             CcccceeEE-----eeeeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHH-HHhhccChhhheeccccccc
Confidence            11  01111     114555555544443   7888652  11 11 111111111110 11112223333466778888


Q ss_pred             EEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         158 LVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       158 l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.. .+.|...+.|++ ++..+.. +     ..........+++..+...|.|+|+|.|.|..+...+-++.+.|.
T Consensus       149 l~cr~pe~~paae~~w~k-~e~~~~p-d-----~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  149 LPCRPPEGDPKAEVEWLK-NEVVIDP-D-----ANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             ccccCcccchhhhhhccc-cCCCCCc-c-----ccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            99876 678888999999 4433322 1     223344555799999999999999999999998665555555443

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.01  E-value=0.0001  Score=47.50  Aligned_cols=75  Identities=17%  Similarity=0.370  Sum_probs=44.1

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC-ccEEEEEcCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN-ARLSVTHNDA   97 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   97 (238)
                      ....|+.++|.|.+.+.-+.                        ...++|++++..+...........+ ..|...+   
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~------------------------~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S---   69 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPR------------------------DITVKWLKNGNELSAEQPNITPEGDSVSYNVTS---   69 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCC------------------------CCEEEEEECCEECcccccceeeCCCCCcEEEEE---
Confidence            44578889999999753221                        3579999987765322111111122 2454443   


Q ss_pred             CeEEEEEcccCcccCe-EEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRG-YYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G-~Y~C~~~~~~~  124 (238)
                         .|.+.. ...|.| .|+|.+.+.+.
T Consensus        70 ---~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          70 ---TVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ---EEEEEC-ccccccCceEEEEEeCCC
Confidence               565543 444544 69999987653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.01  E-value=4.4e-05  Score=48.28  Aligned_cols=81  Identities=14%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARL   90 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~   90 (238)
                      .++.......++.+.|.|.+.+..+.                        ...+.|++++.......  .......++.|
T Consensus         7 ~~p~~~~~~~~~~~~L~C~~~gfyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~dgty   62 (100)
T cd07699           7 FPPSSEELEKSGKATLVCLINDFYPG------------------------FATVQWKVDGATVSSGVQTSTTEQQSDNTY   62 (100)
T ss_pred             ECCCHHHHccCCCcEEEEEEEeEECC------------------------CCEEEEEECCEECcccEeccccEECCCCCE
Confidence            33444445567889999999864322                        35699999877653211  11122235566


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ....      .|.+..-...+...|+|.+.+.+
T Consensus        63 ~~~s------~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          63 SLSS------YLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             EEEE------EEEEcHHHhCCCCeEEEEEEecC
Confidence            6554      66665444445679999997754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.01  E-value=0.00015  Score=45.26  Aligned_cols=69  Identities=17%  Similarity=0.399  Sum_probs=40.9

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCeE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  100 (238)
                      |+.+.|.|.+.+.-+.                        ...+.|++++.......  .......++.|...+      
T Consensus        14 ~~~~~L~C~a~gF~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s------   63 (93)
T cd07698          14 DGSLTLSCHATGFYPR------------------------DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWV------   63 (93)
T ss_pred             CCcEEEEEEEEEEeCC------------------------CcEEEEEECCEECcccccccceEECCCCeEEEEE------
Confidence            7899999999863222                        23699999874222111  111122334444433      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.   ..+.+.|+|++.+.+.
T Consensus        64 ~l~v~---~~~~~~ytC~V~H~~~   84 (93)
T cd07698          64 TLEVP---PEDKARYSCRVEHSGL   84 (93)
T ss_pred             EEEEC---CCCCCEEEEEEEeCCC
Confidence            55553   4478999999977544

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.01  E-value=5.4e-05  Score=47.20  Aligned_cols=73  Identities=16%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   99 (238)
                      .++.+.|.|.+.+.-+.                        ...+.|++++..+...  .......+++.|....     
T Consensus        13 ~~~~~~L~C~a~gFyP~------------------------~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S-----   63 (94)
T cd05847          13 TSETIQLLCLISGYTPG------------------------TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTS-----   63 (94)
T ss_pred             CCCCEEEEEEEEeEECC------------------------CCEEEEEECCEECcCceeecccEECCCCcEEEEE-----
Confidence            56778999999864332                        3469999987654221  1122233445565544     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+..-...+...|.|++.+.+.
T Consensus        64 -~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          64 -ELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             -EEEEchHHhcCCCeEEEEEEECCe
Confidence             666654433456799999977543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG3515|consensus

Probab=97.97  E-value=2e-05  Score=65.87  Aligned_cols=168  Identities=15%  Similarity=0.245  Sum_probs=92.5

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-eeeeEeecCccEEEEEcC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-IHEHVITNNARLSVTHND   96 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   96 (238)
                      ....+|+.+.|.|.+.                         .++|.+.+.|+++....... ....   ....+...   
T Consensus       216 qsF~~g~~inlvc~~~-------------------------gg~P~~~~~w~~~s~~~~~~sl~~~---~~sg~~v~---  264 (741)
T KOG3515|consen  216 QSFTEGQTINLVCNAQ-------------------------GGNPSQQQTWYKDSRPQSESSLLSQ---EPSGDTVS---  264 (741)
T ss_pred             CcccccceEEEEehhh-------------------------cCCcchhhhhccccccchhhhcccC---CCCCCccc---
Confidence            4577899999999653                         35668889999987654322 0000   01111111   


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cccCCeEEEEeC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRRE  175 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~  175 (238)
                         .++.+..-...+.-...|.+.+  .......+.+..++..... ......+..|+...+.|... .+|.+.+.|+++
T Consensus       265 ---~~~~~~~~r~~~~~~~kc~a~n--~~~~~~~tav~~~~~~~~I-st~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~  338 (741)
T KOG3515|consen  265 ---STLVLRVGRQDLQAQLKCKASN--LLAASQITAVQVKPTAVPI-STSDSGLSSGRSARSSCVSSSSKPPAHIAWYKD  338 (741)
T ss_pred             ---ccccccccccchhhhhhccccC--ccccceeeecccccccccc-cCcccccccccccccceeccCCCCccceeeecc
Confidence               1444444444555677899876  2222333444433332211 12233467788899999874 488889999994


Q ss_pred             CCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ......................-.+..-...+.|.|.|+|.+.+...
T Consensus       339 ~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~  385 (741)
T KOG3515|consen  339 TKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLEL  385 (741)
T ss_pred             CcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccc
Confidence            33222211111111111111122344456667888999999998775

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.93  E-value=0.00011  Score=45.78  Aligned_cols=67  Identities=22%  Similarity=0.359  Sum_probs=37.4

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ++.+.|.|.+.| +|.. .++|.+++............  .........+.|   .+...+.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l---~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTL---EVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEE---EECCCCCCEEEEEEEeCCC
Confidence            677999999999 5665 89999944222211110000  000001111123   3444567799999998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd00096 Ig Immunoglobulin domain

Probab=97.93  E-value=2.7e-05  Score=45.23  Aligned_cols=65  Identities=32%  Similarity=0.558  Sum_probs=42.0

Q ss_pred             EEEEEEEccccCCeEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +.|.|.+.+.+...+.|++.+ ......... .............|.+..+...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNG-KPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECC-EECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368999988777799999943 322111100 00111123334468888999999999999998866

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.91  E-value=0.00033  Score=43.78  Aligned_cols=76  Identities=20%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             cEEEEEEEcc-ccCCeEEEEeCCC---eeeEee-c--C----CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941         155 SAKLVCKAKG-YPTPKITWRREDN---KEIIVR-S--N----PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       155 ~~~l~C~~~~-~p~~~~~W~~~~~---~~~~~~-~--~----~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      ++.|.|.... .....++|.+.++   ..+..- .  .    ..-..+....    .+.+|.|.++..+|.|.|+|.+..
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence            5789998753 3455789987432   111110 0  0    0111121111    246899999999999999999976


Q ss_pred             C-CCCCccceEEE
Q psy7941         220 G-VPPTVSKRLML  231 (238)
Q Consensus       220 ~-~g~~~~~~~~l  231 (238)
                      - .| ...+.+.|
T Consensus        82 ~P~g-~~~~~i~~   93 (96)
T cd05889          82 YPQG-SWEKVIEV   93 (96)
T ss_pred             CCCC-CeEEEEEE
Confidence            4 56 43555543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.90  E-value=7e-05  Score=48.86  Aligned_cols=75  Identities=16%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCC--eee-Eeec-C---CCCCcceEEE-----eeceEEEEEeecCCCe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDN--KEI-IVRS-N---PPSSQKVFSV-----ESEVLSLTKVTRSEMG  211 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~--~~~-~~~~-~---~~~~~~~~~~-----~~~~l~i~~~~~~d~G  211 (238)
                      +..+.+..|+++.|.|.... .....+.|++...  .+. .... .   .....+....     ....|.|.+++.+|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            34567889999999999865 3456799998422  111 1110 0   1111222111     1347999999999999


Q ss_pred             EEEEEeee
Q psy7941         212 AYQCIAAN  219 (238)
Q Consensus       212 ~y~C~~~n  219 (238)
                      .|.|.+..
T Consensus        86 ~Y~C~~~~   93 (116)
T cd07706          86 KYFCALST   93 (116)
T ss_pred             EEEEEEEC
Confidence            99999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.88  E-value=0.00017  Score=43.93  Aligned_cols=70  Identities=20%  Similarity=0.428  Sum_probs=46.1

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   99 (238)
                      .++++.|.|.+.+..+.                        ...|.|++++..+....  .......++.|.+.+     
T Consensus         7 ~~~~~~L~C~v~~f~P~------------------------~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s-----   57 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPK------------------------DITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS-----   57 (83)
T ss_dssp             STSEEEEEEEEEEEBSS------------------------TEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE-----
T ss_pred             CCCCEEEEEEEEEEECC------------------------CcEEEEEeccceeeeeeeecccccccccceeeeE-----
Confidence            38899999999875433                        33699999876543211  112224567777665     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+.   ..+...|.|.+.+...
T Consensus        58 -~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen   58 -SLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             -EEEEE---TTTTGGEEEEEEETTS
T ss_pred             -EEEec---CCCCCEEEEEEEECCC
Confidence             66665   5566699999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.88  E-value=0.00013  Score=47.21  Aligned_cols=91  Identities=14%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEee-cCcc
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVIT-NNAR   89 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~-~~~~   89 (238)
                      .++.......++.++|.|.+.+.-+.                        ...+.|++++..+.....  ..... +++.
T Consensus         8 ~~ps~~e~~~~~~~tL~Cla~gFyP~------------------------~I~V~W~kng~~l~~g~~~~~~~~~~~~gT   63 (115)
T cd05769           8 FPPSEAEIRNKRKATLVCLATGFYPD------------------------HVSLSWKVNGKEVTDGVATDPQALRENTST   63 (115)
T ss_pred             ECcChHHhccCCCcEEEEEEEeEeCC------------------------CcEEEEEECCEECCCCcccccceecCCCCe
Confidence            34444445567889999999864332                        246999998765432111  01111 1245


Q ss_pred             EEEEEcCCCeEEEEEcccCccc-CeEEEEEEecCCCcceeeEEEE
Q psy7941          90 LSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      |...+      .|.+......+ ...|+|.+.+.+.......-.+
T Consensus        64 Ys~~S------~L~v~~~~w~~~~~~ytC~V~H~g~~~~~~~~~~  102 (115)
T cd05769          64 YSISS------RLRVSATEWFNPRNTFTCIVQFYGGTDTDKWQSI  102 (115)
T ss_pred             EEEEE------EEEEChHHhccCCCeEEEEEEEeCCccceeeeee
Confidence            55544      66665443333 5699999987655444433333

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.86  E-value=6.1e-05  Score=48.07  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=44.0

Q ss_pred             ecCCCcEEEEEEEccccCCeEEEEeCCCe----e--eEeecCCCC---------CcceEE---EeeceEEEEEeecCCCe
Q psy7941         150 VPEGGSAKLVCKAKGYPTPKITWRREDNK----E--IIVRSNPPS---------SQKVFS---VESEVLSLTKVTRSEMG  211 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~--~~~~~~~~~---------~~~~~~---~~~~~l~i~~~~~~d~G  211 (238)
                      +..|++++|.|.........+.|++....    +  +........         ......   .....|.|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            57899999999986554557999984422    1  111110000         111111   12336999999999999


Q ss_pred             EEEEEeee
Q psy7941         212 AYQCIAAN  219 (238)
Q Consensus       212 ~y~C~~~n  219 (238)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.86  E-value=5.3e-05  Score=46.82  Aligned_cols=68  Identities=28%  Similarity=0.554  Sum_probs=38.9

Q ss_pred             CCcEEEEEEEc-cccCCeEEEEeCCCeeeEe--ecCCCCCcceEEEeeceEEEEEeecCCC-eEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAK-GYPTPKITWRREDNKEIIV--RSNPPSSQKVFSVESEVLSLTKVTRSEM-GAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~y~C~~~n~~g  222 (238)
                      |+.+.+.|.+. ++|.|.++|+.++......  ........... ...+.|.+. +..+|. ..++|.|.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~S~l~~~-~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLF-TVSSTLTLT-PTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTE-EEEEEEEEE-TTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcc-eEEEEEEEE-cChHHCCeEEEEEEECCcc
Confidence            67899999875 5999999999955444111  11001111111 112245554 344444 499999999865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.86  E-value=0.00034  Score=41.64  Aligned_cols=54  Identities=15%  Similarity=0.377  Sum_probs=33.2

Q ss_pred             ceEEEEeCCceeeeeee-e-eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          64 MKVAWIKADTKAVLAIH-E-HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        64 ~~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ..+.|+|++..+..... . .....++.|...+      .|.+......+...|+|++.+.+
T Consensus        16 i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407       16 ITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CEEEEEECCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEcC
Confidence            47999998764322111 1 1122455666554      67776656677789999997654

>cd00096 Ig Immunoglobulin domain

Probab=97.82  E-value=0.00019  Score=41.46  Aligned_cols=55  Identities=22%  Similarity=0.367  Sum_probs=33.5

Q ss_pred             CceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          63 AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        63 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...+.|++.+..........      .............|.|.++...|.|.|.|.+.+..
T Consensus        12 ~~~~~W~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          12 PPTITWLKNGKPLPSSVLTR------VRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CCcEEEEECCEECCCcccEE------eccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            55799999765432211110      00011111234489999999999999999996644

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.82  E-value=0.00016  Score=47.32  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=47.0

Q ss_pred             CCceeecCCCcEEEEEEEcccc------CCeEEEEeCCCe----e-eEeecC-----CCCCcceEE-----EeeceEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP------TPKITWRREDNK----E-IIVRSN-----PPSSQKVFS-----VESEVLSLT  203 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~~~~----~-~~~~~~-----~~~~~~~~~-----~~~~~l~i~  203 (238)
                      +..+.+..|+.++|.|......      ...+.|++....    . ......     .....+...     .....|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4456788999999999864321      236999985422    1 111110     011112111     123479999


Q ss_pred             EeecCCCeEEEEEeeeC
Q psy7941         204 KVTRSEMGAYQCIAANG  220 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n~  220 (238)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.81  E-value=0.0007  Score=42.22  Aligned_cols=58  Identities=9%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .++|.+.|+|+++.....  ........++++...+      .|.+......|...|+|++.+...
T Consensus        26 ~gkPaa~IsW~~~~~g~~--~~~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          26 NGRPPARISWSSTLGGNA--NTTSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             CCCCCcEEEEEcCCCCCe--eEEEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCccc
Confidence            356788999999732211  1111122244555544      777766656666799999987543

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.81  E-value=0.00011  Score=46.55  Aligned_cols=82  Identities=13%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeE--ee--cC
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHV--IT--NN   87 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~--~~--~~   87 (238)
                      .++....+..|+.++|.|.+.+.-+.                        ...+.|++++....... ....  ..  .+
T Consensus         6 ~~p~~~~~~~~~~~tL~C~a~gFyP~------------------------~i~v~W~k~g~~~~~~~~~~~~~~~~~~~d   61 (102)
T cd05768           6 LPPPSEELSLQETATLTCLVKGFSPS------------------------DIFVKWLQNGQPLSKQKYVTTAPMQEPGGN   61 (102)
T ss_pred             eCcChHHhCcCCceEEEEEEeeEeCC------------------------CCEEEEEECCEECCcccccccCcccccCCC
Confidence            34444445567899999999864332                        34689999876532211 0000  11  13


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.|.+..      .|.+..-...+...|+|.+.+.+.
T Consensus        62 gTy~~~s------~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          62 ESYFLYS------KLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CeEEEEE------EEEEcHHHhcCCCcEEEEeEeCCC
Confidence            4555544      566633323355689999977543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.80  E-value=0.00043  Score=43.17  Aligned_cols=71  Identities=14%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeEeecCccEEEEEcCCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   98 (238)
                      ..|+.++|.|.+.+.-+.                        ...+.|++++......  ........++.|....    
T Consensus        12 ~~~~~~~L~C~~~gFyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s----   63 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPP------------------------EITVKWFKNGQEETEGVVSTELIPNGDWTYQILV----   63 (94)
T ss_pred             cCCCCeEEEEEEeeecCC------------------------CCEEEEEECCeecCCCceecceEECCCCcEEEEE----
Confidence            368999999999864332                        3468999987664331  1122222344565544    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.+.   .++...|.|++.+.+.
T Consensus        64 --~L~~~---~~~~~~ysC~V~H~~l   84 (94)
T cd05766          64 --MLETT---PSRGDTYTCVVEHSSL   84 (94)
T ss_pred             --EEEEc---CCCCCEEEEEEEeCCC
Confidence              55543   4567799999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.77  E-value=0.00073  Score=42.10  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=43.3

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   99 (238)
                      .|+..+|.|.+.+.-+.                        ...++|++++..+..  .........++.|....     
T Consensus        14 ~~~~~tL~C~a~gFyP~------------------------~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s-----   64 (94)
T cd05767          14 LGEPNTLICFVDNFFPP------------------------VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFS-----   64 (94)
T ss_pred             CCCCeEEEEEEEEEECC------------------------cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEE-----
Confidence            46668999999864332                        346899998765432  11222233455565544     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+.   .++...|+|.+.+.+.
T Consensus        65 -~L~v~---~~~~~~ytC~V~H~~l   85 (94)
T cd05767          65 -YLNFT---PEEGDIYSCIVEHWGL   85 (94)
T ss_pred             -EEEEE---CCCCCeEEEEEEeCCC
Confidence             56554   3566799999977543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.76  E-value=0.0002  Score=44.63  Aligned_cols=69  Identities=16%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .++|.+ ++..+.....   .. ..... ....+.|.+..-...+...|+|.+.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~~~~~~~s~~~~~~~~T-y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLV-DGQVATLVAASTAPQKEEGST-FSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEECcCceeecccEECCCCc-EEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            3466899999999 6764 899999 5544311110   00 01111 11222444443333345699999999764

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.75  E-value=0.00019  Score=42.79  Aligned_cols=65  Identities=28%  Similarity=0.473  Sum_probs=36.3

Q ss_pred             EEEEEEEcc-ccCC-eEEEEeCCCeeeEee-cCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         156 AKLVCKAKG-YPTP-KITWRREDNKEIIVR-SNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       156 ~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.|.|.+.| +|.. .+.|++ ++..+... ....   ..... ....+.|.+.....++...|+|.+.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt-~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGT-YFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCC-EEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            689999998 6664 899999 55432111 0000   00111 11122454444344555699999998754

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.74  E-value=0.00022  Score=44.67  Aligned_cols=81  Identities=15%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             ccCceeEEEecCCEEEEeEEecCC-CceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLG-GHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      .+|.......++.+.|.|.+.+.. ..                        ...+.|.++++. ...........++.|.
T Consensus         9 ~pPs~e~l~~~~~atLtClV~~f~~P~------------------------~i~V~W~~~g~~-~~~~t~~~~~~dgTys   63 (99)
T cd04986           9 QRPALEDLLLGSSASLTCTLSGLRDPE------------------------GAVFTWTPSGGK-EAVQTSAESDQCGCYS   63 (99)
T ss_pred             ECcChHHhCcCCccEEEEEEeccCCCC------------------------CeEEEEEECCcc-CcEEcCcccCCCCCEE
Confidence            444444455788999999998754 22                        346999998765 2111112223355666


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.+      .|.+..-.-.....|+|.+.+...
T Consensus        64 ~~S------~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          64 VSS------VLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             EEE------EEEeCHHHhcCCCeEEEEEECCCc
Confidence            655      666552222333579999977543

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.73  E-value=0.00058  Score=42.66  Aligned_cols=58  Identities=12%  Similarity=0.210  Sum_probs=33.4

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .++|.++|.|+++.....  ........++.+...+      .|.+......|...|+|++.+...
T Consensus        26 ~gkP~a~ItW~~~~~~~~--~~~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          26 NGKPPATISWETTLGGEA--ETQSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             CCcCCCEEEEEeCCCCcc--eeEeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCccc
Confidence            356789999999621111  0111112233455444      677765555566699999977543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.70  E-value=0.0003  Score=43.87  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee-cCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR-SNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|..+.|.|.+.| +|.. .+.|++ ++..+... ....   ...... ...+.|.   +..++...|+|.+.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgTy-~~~s~L~---~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFK-NGQEETEGVVSTELIPNGDWTY-QILVMLE---TTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEE-CCeecCCCceecceEECCCCcE-EEEEEEE---EcCCCCCEEEEEEEeCCC
Confidence            35788999999999 6766 899999 44443221 0000   000011 1111233   333445599999999765

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.70  E-value=0.0063  Score=47.43  Aligned_cols=79  Identities=24%  Similarity=0.480  Sum_probs=51.2

Q ss_pred             CCeEEEEEcccCcccCeEEEEEEec---CCCcceeeEEEEE-cCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--e
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNT---NPMTKQMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--K  169 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~---~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~  169 (238)
                      ..++.|.|.++...|+|.|+-...+   .....+...+.+. -+|.+.....    .+..|+...-.|.+.. +|+-  .
T Consensus       204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~----PVL~Ge~YkAtC~vAnYYPP~Svr  279 (490)
T PHA03271        204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP----PVLSGENYKASCIVRHFYPPGSVY  279 (490)
T ss_pred             cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC----ccccCCCceEEEEeeeecCCCceE
Confidence            3678999999999999966444332   1222223333333 4555554433    2678999999999977 5544  7


Q ss_pred             EEEEeCCCeee
Q psy7941         170 ITWRREDNKEI  180 (238)
Q Consensus       170 ~~W~~~~~~~~  180 (238)
                      +.|+++ +...
T Consensus       280 lrWf~n-G~~V  289 (490)
T PHA03271        280 VSWRQN-GNIA  289 (490)
T ss_pred             EEEEeC-Cccc
Confidence            999995 5444

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.69  E-value=0.00018  Score=45.52  Aligned_cols=72  Identities=22%  Similarity=0.361  Sum_probs=39.6

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--C-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--P-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...++.+.|.|.+.| +|.. .+.|++ ++..+.....  . .....-.....+.|.+..-...+...|+|.+.+...
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKV-DGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEE-CCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            334677999999998 7744 899999 5544421110  0 000000111122344433333345599999999764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.69  E-value=0.00075  Score=42.08  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             CcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         154 GSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       154 ~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      ....+.|.+. |.|.+.|+|+++............. .... .-.+.|.+. ...+|.| .|+|.+.|..-
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~-~gt~-tv~S~l~~~-P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENG-DGTV-TVTSEYSLV-PTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCC-CCCE-EEEEEEEEe-cCHHHCCCEEEEEEeCccc
Confidence            4578899885 5999999999852222111111111 1111 111234443 4455666 99999999864

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.69  E-value=0.00075  Score=42.14  Aligned_cols=77  Identities=16%  Similarity=0.264  Sum_probs=42.0

Q ss_pred             CCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-CCccceE
Q psy7941         153 GGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP-PTVSKRL  229 (238)
Q Consensus       153 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g-~~~~~~~  229 (238)
                      .....+.|.+ .|+|.+.|+|+++........... ..... ..-.+.|.+ ....+|.| .|+|.+.|..- .....++
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~-~~~g~-~tv~S~l~~-~p~~~d~G~~~tC~v~h~~l~~~~~~~~   91 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKE-NPNGT-VTVTSEYRL-VPSREANGKELTCVVSHPTLQEPQRFSV   91 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeec-CCCCC-EEEEEEEEE-ecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            3457889998 569999999999421111111100 00111 111223444 34556666 99999999874 2334444


Q ss_pred             EEE
Q psy7941         230 MLH  232 (238)
Q Consensus       230 ~l~  232 (238)
                      .|.
T Consensus        92 ~L~   94 (95)
T cd05719          92 TLN   94 (95)
T ss_pred             Eee
Confidence            443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.68  E-value=0.00039  Score=45.35  Aligned_cols=75  Identities=25%  Similarity=0.387  Sum_probs=46.2

Q ss_pred             CCceeecCCCcEEEEEEEcccc--CCeEEEEeCCC--ee--eEeecC--------CCCCcceEEE--e---eceEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP--TPKITWRREDN--KE--IIVRSN--------PPSSQKVFSV--E---SEVLSLTKV  205 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~--~~--~~~~~~--------~~~~~~~~~~--~---~~~l~i~~~  205 (238)
                      +..+.+..|+.++|.|...+..  ...+.|++...  .+  +.....        .....+....  .   ...|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            3446788999999999876532  45799998432  11  111100        0011111111  1   126899999


Q ss_pred             ecCCCeEEEEEeee
Q psy7941         206 TRSEMGAYQCIAAN  219 (238)
Q Consensus       206 ~~~d~G~y~C~~~n  219 (238)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.67  E-value=0.0009  Score=41.70  Aligned_cols=83  Identities=17%  Similarity=0.329  Sum_probs=46.0

Q ss_pred             ceeecCCCcEEE-EEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-
Q psy7941         147 DMMVPEGGSAKL-VCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP-  222 (238)
Q Consensus       147 ~~~~~~g~~~~l-~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g-  222 (238)
                      ...+.+|..+.+ .|.+ .|.|.+.|+|+.+............. ....... +.+.+. ..++|.| .++|.+.+..- 
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~-ngT~TV~-S~~~l~-p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHP-NGTTTVT-SEYIWV-PSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCC-CCCEEEE-EEEEEE-eCHHHCCcEEEEEEeCcccC
Confidence            345677888888 8987 56999999999853222211111111 1111111 234443 3445555 99999999864 


Q ss_pred             CCccceEEEE
Q psy7941         223 PTVSKRLMLH  232 (238)
Q Consensus       223 ~~~~~~~~l~  232 (238)
                      .....+..|.
T Consensus        87 ~~~~~~~~L~   96 (97)
T cd07704          87 QDFRITHILN   96 (97)
T ss_pred             CCceeeEEee
Confidence            2333444443

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.65  E-value=0.00041  Score=43.42  Aligned_cols=72  Identities=17%  Similarity=0.289  Sum_probs=38.9

Q ss_pred             ecCCCcEEEEEEEccc--cCC-eEEEEeCCCeeeEeecC-CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKGY--PTP-KITWRREDNKEIIVRSN-PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~--p~~-~~~W~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..++.+.|.|.+.|.  |.. .++|.++++........ .. ..... ....+.|.+..-...+.-.|+|.+.+...
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgt-y~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNAT-LSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCC-EEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            4557889999999887  544 79999955433221111 00 00111 11111333332222223389999999764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.63  E-value=0.0011  Score=41.34  Aligned_cols=73  Identities=16%  Similarity=0.358  Sum_probs=42.2

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDA   97 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   97 (238)
                      ....++.++|.|.+.+.-+.                        ...+.|++++........ .....+++.|...+   
T Consensus        12 e~~~~~~~tL~C~a~gFyP~------------------------~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S---   64 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPD------------------------VIQVHWREGNSPSILGSQKSEKDKDNDVYSTTS---   64 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCC------------------------CeEEEEEECCEECcCCeEeccEecCCCEEEEEE---
Confidence            34456789999999874333                        345899998765432111 11222233454443   


Q ss_pred             CeEEEEEcccCcc-cCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRRE-DRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~-d~G~Y~C~~~~~~~  124 (238)
                         .|.+.   .+ ....|+|.+.+.+.
T Consensus        65 ---~L~vt---~~~~~~~ysC~V~H~g~   86 (96)
T cd07697          65 ---WLTVT---KDSLGKKFRCIYKHEGI   86 (96)
T ss_pred             ---EEEEC---chhCCCeEEEEEEECCC
Confidence               55543   33 34469999987543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.63  E-value=0.00036  Score=45.17  Aligned_cols=70  Identities=21%  Similarity=0.333  Sum_probs=40.3

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcc-eEEEeeceEEEEEeecCCC-eEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQK-VFSVESEVLSLTKVTRSEM-GAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~i~~~~~~d~-G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .+.|.+ ++..+.....   ...... -.....+.|.+..-+..+. ..|+|.+.+...
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~   93 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG   93 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence            4667899999999 6765 899999 5544321110   000000 1112233455554444343 489999998765

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.61  E-value=0.00036  Score=43.69  Aligned_cols=72  Identities=24%  Similarity=0.301  Sum_probs=40.2

Q ss_pred             ecCCCcEEEEEEEcc-c-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-Y-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+..+.|.|.+.+ + |.. .+.|.++++..... ........-.....+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            335778999999998 6 544 89999965431111 111111111122223455443333333479999999764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.60  E-value=0.0019  Score=40.09  Aligned_cols=71  Identities=14%  Similarity=0.320  Sum_probs=43.1

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCe
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANT   99 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   99 (238)
                      ..|....|.|.+.+.-+.                        ...+.|++++..+..... ......+..|....     
T Consensus        13 ~~g~~~~L~C~a~gFyP~------------------------~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s-----   63 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPP------------------------DIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLK-----   63 (93)
T ss_pred             cCCCceEEEEEEEEEeCC------------------------CCEEEEEECCEECCCcEECcEEECCCCCEEEEE-----
Confidence            346667999999864333                        346899998766431111 11123344555443     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+   ...+...|.|.+.+.+.
T Consensus        64 -~l~~---~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          64 -STEF---TPTKGDEYACRVRHNSM   84 (93)
T ss_pred             -EEEE---CCCCCCeEEEEEEECCC
Confidence             4544   35678899999987543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.56  E-value=0.00044  Score=43.86  Aligned_cols=69  Identities=14%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCC---cceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSS---QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..+.|.|.+.| +|.. .++|.+ ++..+.....    ....   ...+ ...+.|.+..-...+...|+|.+.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~~~~~~~~~~~~~~~~dgTy-~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLSKQKYVTTAPMQEPGGNESY-FLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEE-CCEECCcccccccCcccccCCCCeE-EEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            4678999999999 6655 789999 4444321110    0000   1111 1122344432222344589999999764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.54  E-value=0.00063  Score=42.37  Aligned_cols=66  Identities=20%  Similarity=0.351  Sum_probs=36.8

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+....|.|.+.| +|.. .++|.+ ++..+.....    ....... ......|.+   ...+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~~~~~~~~~~~~~Dgt-y~~~s~L~v---~~~~~~~ytC~V~H~~l   85 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVTDGVSETRYYPRQDLS-FQKFSYLNF---TPEEGDIYSCIVEHWGL   85 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEE-CCeEccCceEEeeeEeCCCCc-EEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence            3556799999999 7755 899999 4444321100    0000111 111123433   33455599999998653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.52  E-value=0.00078  Score=42.10  Aligned_cols=66  Identities=20%  Similarity=0.475  Sum_probs=36.3

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      .+..+.|.|.+.| +|.. .++|.+ ++..+.....   ...... .....+.|.+   ..++.| .|+|.+.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~~~~~~~~~~~~~d-ty~~~S~L~v---t~~~~~~~ysC~V~H~g~   86 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWRE-GNSPSILGSQKSEKDKDND-VYSTTSWLTV---TKDSLGKKFRCIYKHEGI   86 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEE-CCEECcCCeEeccEecCCC-EEEEEEEEEE---CchhCCCeEEEEEEECCC
Confidence            3567899999999 6755 899999 5544321100   000111 1122223433   332234 69999999553

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.51  E-value=0.0038  Score=38.95  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             cCceeEEEecCCEEE-EeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941          14 PLENVTIAQGRDAIF-TCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV   92 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~   92 (238)
                      +-..+.+.+|+.+.+ .|.+.                         .++|+++|.|+.+..... . .......++.+.+
T Consensus         7 ~~~~~~~~~g~~~~vA~C~sa-------------------------~gkPaa~IsW~~~~~G~~-~-~~~~~~~ngT~TV   59 (97)
T cd07704           7 PGPSLLIDGGNGTTLAACCAA-------------------------EGRPAADVTWETNVYGTS-E-SHSQEHPNGTTTV   59 (97)
T ss_pred             CCCeeEeecCcceeEEEEEcc-------------------------CCccCCEeEEeCCCCCcc-c-eeeecCCCCCEEE
Confidence            344566788999999 99986                         356789999998633221 1 1112223456666


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .+      .|.+......|.-.++|++.+...
T Consensus        60 ~S------~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          60 TS------EYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             EE------EEEEEeCHHHCCcEEEEEEeCccc
Confidence            65      777766666677799999977543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.48  E-value=0.0008  Score=41.79  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEE---EEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL---TKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|....|.|.+.| +|.. .++|.+ ++..+. ...  . .......+.+..+   ..+...+...|+|.+.+...
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~-~~~--~-~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l   84 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP-KVE--Q-SDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM   84 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC-CcE--E-CcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence            4556789999999 6655 899999 555443 111  0 0111111222221   13345556689999999653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.47  E-value=0.00062  Score=40.92  Aligned_cols=63  Identities=22%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             cEEEEEEEccccC--CeEEEEeCCC-e---eeEeec--C----C-CCCcceEE-----EeeceEEEEEeecCCCeEEEEE
Q psy7941         155 SAKLVCKAKGYPT--PKITWRREDN-K---EIIVRS--N----P-PSSQKVFS-----VESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       155 ~~~l~C~~~~~p~--~~~~W~~~~~-~---~~~~~~--~----~-~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      ++.|.|.+.....  ..+.|++... .   .+....  .    . ....+...     .....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            3689998866443  3799987432 1   111110  0    0 11112211     1224799999999999999996


Q ss_pred             e
Q psy7941         217 A  217 (238)
Q Consensus       217 ~  217 (238)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.44  E-value=0.00059  Score=38.99  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=23.0

Q ss_pred             EEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      +|.+........|.|.|.+.+   ......|.|.
T Consensus        34 tlnLGs~~~DPRG~Y~C~~s~---~~~~~~LQVy   64 (69)
T cd07691          34 LLDLGSRINDPRGTYSCKESE---PNKEKTLQVY   64 (69)
T ss_pred             EEeccCcccCCCcceEecCcc---CCCcEEEEEE
Confidence            888888888999999998854   2334456654

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.44  E-value=0.00033  Score=42.60  Aligned_cols=67  Identities=28%  Similarity=0.555  Sum_probs=38.7

Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+..+.|.|.+.+ +|.. .+.|++ ++..+.....    ....... ....+.|.+.   ..+...|+|.+.+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~~~~~~~~~~~~~dgt-y~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLK-NGKEVTEGVETTPPPPNSDGT-YSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEE-TTEEETTTEEEEEEEEETTSE-EEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEe-ccceeeeeeeecccccccccc-eeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            34788999999998 6755 899999 4443211000    0000111 1111234443   5555599999999765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.0015  Score=40.76  Aligned_cols=71  Identities=8%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   99 (238)
                      .++.+.|.|.+.+.-+.                        ...+.|++++.. ....  ......+++.|....     
T Consensus        15 ~~~~~~L~C~a~gFyP~------------------------~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s-----   64 (95)
T cd04985          15 SSDSVTLGCLATGFLPE------------------------PVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS-----   64 (95)
T ss_pred             CCCcEEEEEEEeeEECC------------------------CcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE-----
Confidence            46779999999864333                        346899998765 2111  111122245555544     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                       .|.+....-.....|+|++.+.+
T Consensus        65 -~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          65 -QLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             -EEEEeHHHcCCCCcEEEEEEeCC
Confidence             55554322223568999998765

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.42  E-value=0.00092  Score=41.50  Aligned_cols=71  Identities=20%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             ecCCCcEEEEEEEcc-ccC--CeEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPT--PKITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~--~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      +..|..+++.|.+.+ +|.  ..+.|++ +...+........ ...........+.+.. .++|.| +|+|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEec-CcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            467999999999976 776  4899998 4443332221100 0000001112334333 578888 99999985543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.32  E-value=0.053  Score=42.73  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             EEEEcccCcccCeEEEEEEecC-CCcce--eeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--eEEEEe
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTN-PMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--KITWRR  174 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W~~  174 (238)
                      .|.|..++...+|.|+=...+. .....  .+.+....+|.+.+...+    +.+|+...-.|.+.. ||..  .+.|++
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            6999999999999999987442 22222  234455567776554333    678999999999976 5544  799999


Q ss_pred             CCC
Q psy7941         175 EDN  177 (238)
Q Consensus       175 ~~~  177 (238)
                      ++.
T Consensus       259 ng~  261 (466)
T PHA03270        259 GGD  261 (466)
T ss_pred             CCc
Confidence            544

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.29  E-value=0.00051  Score=38.95  Aligned_cols=50  Identities=26%  Similarity=0.482  Sum_probs=32.7

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      .|..++|.|+...   ..+.|.+++ .....             .+..+.+.+.. ++.|.|.|.+.+
T Consensus         6 sGTtVtlTCP~~~---~~i~W~~n~-~~~~g-------------~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLSG---DDIKWKKND-QVSQG-------------SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCCC---CCceEEeCC-ccCCC-------------CCceEEeeccC-CCCceEEEEeCC
Confidence            4889999998652   239999944 22211             22234444555 889999999963

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.22  E-value=0.0021  Score=36.76  Aligned_cols=60  Identities=25%  Similarity=0.485  Sum_probs=40.0

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      .+.+.|.|.+    .-+|.|++ +......             ....|.+.....+-.|.|.|.+++     .++...|.
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-------------~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQ   62 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV-------------SNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQ   62 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc-------------cccEEeccCcccCCCcceEecCcc-----CCCcEEEE
Confidence            4578999965    24699999 5433211             144677777788889999999877     13444556


Q ss_pred             EEe
Q psy7941         233 VHC  235 (238)
Q Consensus       233 V~~  235 (238)
                      |.+
T Consensus        63 VyY   65 (69)
T cd07691          63 VYY   65 (69)
T ss_pred             EEE
Confidence            654

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.21  E-value=0.00044  Score=45.27  Aligned_cols=82  Identities=18%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---eecCccEEEEEc
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---ITNNARLSVTHN   95 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~   95 (238)
                      ...-++++.|+|.+.+.....                     .+.+.+.|..++...........   .....+..+...
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~n---------------------i~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l   81 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANN---------------------ISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISEL   81 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SS---------------------GGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGG
T ss_pred             EEecCCCEEEEeEeccccccc---------------------cceEEEEEEECCeEEEEEcCccceecccCccccchhHh
Confidence            455788999999997643221                     22556999998765443332111   111122233222


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..++++|.+.....- .|+|+|.+...
T Consensus        82 ~kG~aSL~~~~~~a~-~GnYTCeVt~~  107 (130)
T PF08204_consen   82 LKGNASLKMDKSDAV-EGNYTCEVTEL  107 (130)
T ss_dssp             GGTB--EEEEHHHHH--EEEEEEEEET
T ss_pred             hCCCEEEEEcchhcc-ccceEEEEEec
Confidence            336668888875444 89999999653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.17  E-value=0.0018  Score=40.44  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=35.6

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEe-ecCCCCCc-ceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIV-RSNPPSSQ-KVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ++.+.|.|.+.| +|.. .++|.+ ++..... ........ .-.....+.|.+..-.......|+|.+.+..
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k-~g~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNS-GSNSTSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeE-CCEECCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            566899999999 6655 899999 4543111 00000000 0011112234333222222448999999865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02633 hypothetical protein; Provisional

Probab=97.13  E-value=0.0012  Score=36.82  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       196 ~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .+..|.|.++..+|+|.|.|.+.|..- ....++.|.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEee
Confidence            344688899999999999999998664 335566777654

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.13  E-value=0.019  Score=44.95  Aligned_cols=130  Identities=15%  Similarity=0.250  Sum_probs=67.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---   83 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---   83 (238)
                      .+|.+...+.  .+..|+...-.|.+.+.-+..                       ...+.|++++...........   
T Consensus       246 RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~-----------------------SvrlrWf~nG~~V~~~~~rdt~~~  300 (490)
T PHA03271        246 RPASVDVLAP--PVLSGENYKASCIVRHFYPPG-----------------------SVYVSWRQNGNIATPRKDRDGSFW  300 (490)
T ss_pred             cCCCccccCC--ccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCccccCccccceeEE
Confidence            4454543333  467899999999998764333                       346999998765433221111   


Q ss_pred             -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe--cCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941          84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN--TNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                       +.....++..+      +|.+.+...+..-..+|.+.  .+...   .+.+.-.|..+|.+.       +..+.|   .
T Consensus       301 w~d~~~g~S~VS------Tltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS-------v~FedG---~  364 (490)
T PHA03271        301 WFESGRGATLVS------TITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS-------LAFKDG---Y  364 (490)
T ss_pred             EecCCCceeEEE------EEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE-------EEEeCC---E
Confidence             11222233222      56665544444558999983  11111   111112233333332       223334   4


Q ss_pred             EEEEEccccC-CeEEEEeCCC
Q psy7941         158 LVCKAKGYPT-PKITWRREDN  177 (238)
Q Consensus       158 l~C~~~~~p~-~~~~W~~~~~  177 (238)
                      ..|.+.--|. ..+.|...++
T Consensus       365 AVCtA~CVP~gV~lrWlVgD~  385 (490)
T PHA03271        365 AICTIECVPSGITVRWLVHDE  385 (490)
T ss_pred             EEEeccccCCCcEEEEEecCC
Confidence            4576655443 3899987443

>PHA03376 BARF1; Provisional

Probab=97.11  E-value=0.012  Score=41.09  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             eeecCCCcEEEEEEEcc---ccCCeEEEEeCCC---eeeEeecCC-----CC--CcceEE---EeeceEEEEEeecCCCe
Q psy7941         148 MMVPEGGSAKLVCKAKG---YPTPKITWRREDN---KEIIVRSNP-----PS--SQKVFS---VESEVLSLTKVTRSEMG  211 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~---~p~~~~~W~~~~~---~~~~~~~~~-----~~--~~~~~~---~~~~~l~i~~~~~~d~G  211 (238)
                      +....|+.+.|.|....   .+.-.|.|++.+.   ..+......     +.  ......   ..+-.|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            45667999999998652   2333799999421   112111110     00  011111   22347899999999999


Q ss_pred             EEEEEeeeCC
Q psy7941         212 AYQCIAANGV  221 (238)
Q Consensus       212 ~y~C~~~n~~  221 (238)
                      .|+|.+....
T Consensus       101 tY~C~fQkge  110 (221)
T PHA03376        101 NYLCRMKLGE  110 (221)
T ss_pred             eEEEEEEcCC
Confidence            9999998654

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.08  E-value=0.021  Score=45.57  Aligned_cols=81  Identities=20%  Similarity=0.305  Sum_probs=55.5

Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecC--CCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTN--PMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--  168 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--  168 (238)
                      ..+.+.|.|..++..++|.|+=++.+.  +..  ...+.+.+...|.+.....    .+.+|+...-.|.+.. ||..  
T Consensus       285 ~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~----PVL~Ge~YkAtC~vA~YYPp~Sv  360 (566)
T PHA03269        285 TTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD----PVLLGNPYAAYCKVNKYYPPHSV  360 (566)
T ss_pred             CCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC----ccccCCCceEEEEeeeecCCCce
Confidence            346778999999999999998665331  222  2334455556776655433    3778999999999977 5544  


Q ss_pred             eEEEEeCCCeeeE
Q psy7941         169 KITWRREDNKEII  181 (238)
Q Consensus       169 ~~~W~~~~~~~~~  181 (238)
                      .+.|+++ +..+.
T Consensus       361 rlrWf~n-g~~V~  372 (566)
T PHA03269        361 IVKWTSN-FGNIG  372 (566)
T ss_pred             EEEEEeC-CcccC
Confidence            7999995 44443

>PHA02633 hypothetical protein; Provisional

Probab=97.01  E-value=0.0018  Score=36.08  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             EEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEE
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVV  134 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~  134 (238)
                      .|.|.++..+|+|.|.|...+.... ..+..+.|.
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            8999999999999999999865442 223344444

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.87  E-value=0.032  Score=44.63  Aligned_cols=122  Identities=19%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--EeecCccEEEEE
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--VITNNARLSVTH   94 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~   94 (238)
                      ...+..|+...-.|.+.+.-+..                       ...+.|+++++++.......  ....++.|+..+
T Consensus       336 p~PVL~Ge~YkAtC~vA~YYPp~-----------------------SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVS  392 (566)
T PHA03269        336 GDPVLLGNPYAAYCKVNKYYPPH-----------------------SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVS  392 (566)
T ss_pred             CCccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCcccCccccccceeecCCCceEEEE
Confidence            34577999999999998764332                       34699999977765322111  112344455444


Q ss_pred             cCCCeEEEEEcccCccc--CeEEEEEEe--cCCCc----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941          95 NDANTWTLNIRSVRRED--RGYYMCQVN--TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP  166 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d--~G~Y~C~~~--~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  166 (238)
                            +|.+......|  --..+|.+.  .+...    +..+.-.|..+|.+.+       ....|   ...|.+.--|
T Consensus       393 ------TLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-------~FedG---~AVCtA~CVP  456 (566)
T PHA03269        393 ------ALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-------EIIDG---HIVCLAKCVP  456 (566)
T ss_pred             ------EEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-------EEeCC---EEEEeccccc
Confidence                  66664332233  457799883  11111    1122223444444332       23333   4567776665


Q ss_pred             C--CeEEEEeCCC
Q psy7941         167 T--PKITWRREDN  177 (238)
Q Consensus       167 ~--~~~~W~~~~~  177 (238)
                      .  ..+.|..++.
T Consensus       457 ~~~V~l~WlVgD~  469 (566)
T PHA03269        457 RGVVHFNWWINDI  469 (566)
T ss_pred             CCCceEEEEecCC
Confidence            4  3789987443

>PHA02982 hypothetical protein; Provisional

Probab=96.81  E-value=0.1  Score=37.10  Aligned_cols=126  Identities=10%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe-ec
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI-TN   86 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~-~~   86 (238)
                      ..++.+..++++.|.|.+.+...                         -.+..|+++++.......       ...+ .+
T Consensus        31 ~~dv~a~vd~~V~L~C~~~~~~~-------------------------i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~   85 (251)
T PHA02982         31 TADVNATVDQEVKLQCLFKDADE-------------------------ISRAMWKGDAGFMLAQEANGGTGINAFNYVPG   85 (251)
T ss_pred             hhhhhccCCCcEEEEecCCCcch-------------------------hhhheeeCCCCeEEEeeecCcceeccccccCC
Confidence            34566778999999999754322                         224789986644322111       1000 00


Q ss_pred             --CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEEEcCCcccccccCCceeecCC-CcEEEEEE
Q psy7941          87 --NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDISSEETSGDMMVPEG-GSAKLVCK  161 (238)
Q Consensus        87 --~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~g-~~~~l~C~  161 (238)
                        ...+. .+......+|+|.++..+..|-|+|++..+.....+  .-+.|+......        ...++ ....+.|-
T Consensus        86 ~~kd~y~-~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~--------~W~e~nNeT~V~Cy  156 (251)
T PHA02982         86 PYKDKYA-LSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY--------VVEEHNNETIITCF  156 (251)
T ss_pred             ccceeEE-EEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE--------EEEecCCeEEEEEE
Confidence              11222 222334559999999999999999999765433332  224443211111        11222 34567898


Q ss_pred             EccccCCeEEEEe
Q psy7941         162 AKGYPTPKITWRR  174 (238)
Q Consensus       162 ~~~~p~~~~~W~~  174 (238)
                      +-.+..+-..|..
T Consensus       157 VgS~~~dvp~W~V  169 (251)
T PHA02982        157 VGSKHGDVPRFIV  169 (251)
T ss_pred             EEeccCCCccEEE
Confidence            7544333338887

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.73  E-value=0.0025  Score=41.83  Aligned_cols=81  Identities=14%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             ecCCCcEEEEEEEccc-----cCCeEEEEeCCCeeeEeecCCCCCc------c--e--EEEeeceEEEEEeecCCCeEEE
Q psy7941         150 VPEGGSAKLVCKAKGY-----PTPKITWRREDNKEIIVRSNPPSSQ------K--V--FSVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~------~--~--~~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      ..-++++.|+|.+...     +.-.+.|.. ++..+...+......      .  .  ....+.+|.+...+.- .|+|+
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            3457889999998652     222699998 444443333211100      0  0  0011235777664444 89999


Q ss_pred             EEeeeCCCCCccceEEEEE
Q psy7941         215 CIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       215 C~~~n~~g~~~~~~~~l~V  233 (238)
                      |.+.....+. ...+.|..
T Consensus       102 CeVt~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREG-ETTIELKY  119 (130)
T ss_dssp             EEEEETTEEE-EEEEEEEE
T ss_pred             EEEEecCCCc-eEEEEEEE
Confidence            9999877633 66666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=96.71  E-value=0.0045  Score=49.01  Aligned_cols=87  Identities=13%  Similarity=0.226  Sum_probs=61.0

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeC--CCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ....+..+++..+.|.+.|.|.+.|+|.+-  +...+.-. ...........+...|.|-+.+..|+|.|+|.+.+..|.
T Consensus       204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             chhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            345677889999999999999999999752  22222111 111223333445567999999999999999999999994


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                       ..+.+.+.+.
T Consensus       283 -~~rdv~c~s~  292 (560)
T KOG4597|consen  283 -LRRDVPCSSV  292 (560)
T ss_pred             -eeccceeeee
Confidence             3666665554

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.67  E-value=0.047  Score=43.42  Aligned_cols=78  Identities=21%  Similarity=0.375  Sum_probs=53.8

Q ss_pred             eEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE--EcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--eEEE
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV--VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--KITW  172 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W  172 (238)
                      .+.|.|..++..++|.|+=+..+. +.......++|  ..+|.+.+...    .+.+|+...-.|.+.. +|..  .+.|
T Consensus       197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rW  272 (486)
T PHA03273        197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH----PSLKGENYRAVCVVASYFPHSSVKLRW  272 (486)
T ss_pred             ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEE
Confidence            367999999999999998655332 22233344444  56777665433    3778999999999977 5544  7999


Q ss_pred             EeCCCeeeE
Q psy7941         173 RREDNKEII  181 (238)
Q Consensus       173 ~~~~~~~~~  181 (238)
                      ++ ++.++.
T Consensus       273 f~-dg~~V~  280 (486)
T PHA03273        273 YK-NAKEVD  280 (486)
T ss_pred             Ee-CCeecc
Confidence            99 454444

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.62  E-value=0.0033  Score=45.98  Aligned_cols=50  Identities=20%  Similarity=0.301  Sum_probs=39.1

Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ..|.+.|..++++.+...      ........+.|.+.++...++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~l~gn------~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGN------SYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCC------CeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            467899999777766432      33445667789999999999999999998765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.48  E-value=0.021  Score=36.69  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             eeecCCCcEEEEEEEcccc--C-CeEEEEeCCCee--eEeecC------CCCCcceE-E----EeeceEEEEEeecCCCe
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--T-PKITWRREDNKE--IIVRSN------PPSSQKVF-S----VESEVLSLTKVTRSEMG  211 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~-~~~~W~~~~~~~--~~~~~~------~~~~~~~~-~----~~~~~l~i~~~~~~d~G  211 (238)
                      ..+..|..++|.|.+.|.-  . -.+.|.+.....  ......      ........ .    ...-.|.+.+++.+|.+
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa   87 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD   87 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence            4567788899999997743  3 368998843221  111110      00111111 1    11127889999999999


Q ss_pred             EEEEEeee
Q psy7941         212 AYQCIAAN  219 (238)
Q Consensus       212 ~y~C~~~n  219 (238)
                      .|.|..+.
T Consensus        88 ~Y~Ca~e~   95 (115)
T cd05721          88 IYFCKIEL   95 (115)
T ss_pred             EEEEEeee
Confidence            99997653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.42  E-value=0.012  Score=33.49  Aligned_cols=20  Identities=20%  Similarity=0.409  Sum_probs=13.9

Q ss_pred             EEEEcccCcccCeEEEEEEec
Q psy7941         101 TLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .+.+.+-. ++.|.|.|.+.+
T Consensus        36 ~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692          36 KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eEEeeccC-CCCceEEEEeCC
Confidence            34444444 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.41  E-value=0.21  Score=39.52  Aligned_cols=120  Identities=17%  Similarity=0.256  Sum_probs=62.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeEeecCccEEEEEc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHVITNNARLSVTHN   95 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~   95 (238)
                      ..+..|+...-.|.+.+.-+..                       ...+.||+++.....  ..........+.|+..+ 
T Consensus       229 ~PvL~Ge~Y~AtC~va~YYPp~-----------------------Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vS-  284 (466)
T PHA03270        229 HAVLEGEPFGATCVAANYYPGD-----------------------RAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATS-  284 (466)
T ss_pred             CccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCccccCcceeeeeeEecCCCeeEEE-
Confidence            3477899999999998764332                       346999998876532  11122222223333332 


Q ss_pred             CCCeEEEEEcccCc-ccCeEEEEEEe--cCCCc----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          96 DANTWTLNIRSVRR-EDRGYYMCQVN--TNPMT----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        96 ~~~~~~L~i~~~~~-~d~G~Y~C~~~--~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                           +|++..... ...-+.+|.+.  .+...    +..+.-.|+.+|.+.+       ....|   ...|.+.--|.-
T Consensus       285 -----tvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv-------~F~dG---~AVCtA~CVPeg  349 (466)
T PHA03270        285 -----TLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM-------EFGGD---EAVCTAACVPEG  349 (466)
T ss_pred             -----EEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE-------EEeCC---EEEEeccccCCC
Confidence                 555544332 22348899883  11111    1122223344444332       23333   445776554433


Q ss_pred             -eEEEEeCC
Q psy7941         169 -KITWRRED  176 (238)
Q Consensus       169 -~~~W~~~~  176 (238)
                       .+.|...+
T Consensus       350 V~l~W~V~D  358 (466)
T PHA03270        350 VTLAWLLGA  358 (466)
T ss_pred             CEEEEEecC
Confidence             89998744

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.36  E-value=0.027  Score=35.10  Aligned_cols=17  Identities=18%  Similarity=0.489  Sum_probs=14.0

Q ss_pred             EEecCCEEEEeEEecCC
Q psy7941          20 IAQGRDAIFTCVVNNLG   36 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~   36 (238)
                      +.+|..+++.|.+.+..
T Consensus        12 l~~G~~vtv~C~v~~v~   28 (99)
T cd07689          12 LEEGKPVTVKCEVPDVY   28 (99)
T ss_pred             ccCCceEEEEEEecCcc
Confidence            36899999999997643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02982 hypothetical protein; Provisional

Probab=96.31  E-value=0.018  Score=40.70  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=51.0

Q ss_pred             eeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC-----------C----CCCcceEEEeeceEEEEEeecCCCe
Q psy7941         148 MMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN-----------P----PSSQKVFSVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~l~i~~~~~~d~G  211 (238)
                      +....++.+.|.|... +.......|..+++..+.....           +    ...........++|+|..+..+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            3455688999999963 3556688999866654441110           0    0011122344568999999999999


Q ss_pred             EEEEEeeeCCCCC
Q psy7941         212 AYQCIAANGVPPT  224 (238)
Q Consensus       212 ~y~C~~~n~~g~~  224 (238)
                      -|+|.+....+..
T Consensus       114 CYtc~~ks~~~k~  126 (251)
T PHA02982        114 CFTCEAKDAEGKE  126 (251)
T ss_pred             ceEEEEecCCCch
Confidence            9999999866533

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.94  E-value=0.013  Score=42.94  Aligned_cols=47  Identities=17%  Similarity=0.390  Sum_probs=36.2

Q ss_pred             CCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        62 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.|.++|..+++..+.        .+.++.+...+    .|.+.+...+++|.|+|...
T Consensus        11 iDP~y~W~GP~g~~l~--------gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLs   57 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLS--------GNSYVNITETG----KLMFKNFQESMSGSYTCTLS   57 (271)
T ss_pred             CCCceEEECCCCcccC--------CCCeEEEccCc----eEEeeccccccCCceEEEEE
Confidence            3677999998877543        34455555544    89999999999999999984

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03042 CD47-like protein; Provisional

Probab=95.59  E-value=0.17  Score=37.55  Aligned_cols=70  Identities=21%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             cCCCcEEEEEEEccc-----cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         151 PEGGSAKLVCKAKGY-----PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      .-++++.++|.+...     ..-.+.|.. ++......+.+         ...+|.+. ....-.|+|+|.|.+...+. 
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf-~~~~If~~n~t---------n~aSL~~~-f~~~l~GNYTCEv~~l~n~g-   96 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKF-NNKVIFKKNNT---------NTSSLKFN-FSKNLSGNYTCEAINKFNKI-   96 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEe-CCeeEEEecCC---------cceEEEEe-ccccCCCceeEEEeecccCc-
Confidence            347889999998652     233699999 44444332221         11234443 33445899999999876534 


Q ss_pred             cceEEEE
Q psy7941         226 SKRLMLH  232 (238)
Q Consensus       226 ~~~~~l~  232 (238)
                      .+.+.|.
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            4555443

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.08  E-value=0.081  Score=33.28  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=32.1

Q ss_pred             EEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       194 ~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      ...+-.|.|..++..|+|.|...+++..|....+.++|.|.
T Consensus        67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            34455899999999999999999999999766777777764

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03189 UL14 tegument protein; Provisional

Probab=95.02  E-value=0.48  Score=35.77  Aligned_cols=25  Identities=8%  Similarity=0.127  Sum_probs=19.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGH   38 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~   38 (238)
                      ++..+.+..||.+++.|.+-...-.
T Consensus        58 spAP~l~pyGdrvtVpC~fp~H~WP   82 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFPTHDWP   82 (348)
T ss_pred             CCCccccCCCceeeeeeeecCCCCc
Confidence            3566778899999999998655433

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.96  E-value=1.4  Score=34.78  Aligned_cols=135  Identities=15%  Similarity=0.298  Sum_probs=74.0

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee---eeeeee-----eEeec
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA---VLAIHE-----HVITN   86 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~~~-----~~~~~   86 (238)
                      -+.+.+..|..+.+.|.++-.+.+.                       -....|+..+-+.   ......     .-+..
T Consensus       271 ~~~~~~~~g~~v~~~c~~s~~~~e~-----------------------i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~  327 (500)
T PHA02914        271 FDEVMLEVGKRVDIECFFSMCGNEN-----------------------ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAE  327 (500)
T ss_pred             cceeEeccCcEEEEEEEEeecCCcc-----------------------cccceEEecCCcccceeEEEEecceeeccccc
Confidence            3466777899999999987543333                       2357898765322   111111     11222


Q ss_pred             CccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCCcce-eeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      +..|.+...     +-...+|+|.++..+.+|-|+|++..+..... ..-+.|.....+.       ............|
T Consensus       328 ~~~~~i~~~~~~s~dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~-------W~~e~~n~T~V~C  400 (500)
T PHA02914        328 DDDFMISAHANYSDDLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK-------WNTEGDNETKVAC  400 (500)
T ss_pred             CCceEEEEecccccchhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE-------EEeccCceEEEEE
Confidence            344544432     22456999999999999999999965533221 1112222111110       0111123456678


Q ss_pred             EEccc--cCCeEEEEeCCCeee
Q psy7941         161 KAKGY--PTPKITWRREDNKEI  180 (238)
Q Consensus       161 ~~~~~--p~~~~~W~~~~~~~~  180 (238)
                      -+-.+  .++.+.|.. +|...
T Consensus       401 yv~sy~~kp~si~wkv-nGV~~  421 (500)
T PHA02914        401 YAAQYDMQPFSILWKS-NGVSF  421 (500)
T ss_pred             EEEecccCCceeEEEE-ccEEe
Confidence            87443  455899998 55433

>KOG1480|consensus

Probab=94.72  E-value=0.013  Score=49.33  Aligned_cols=75  Identities=19%  Similarity=0.307  Sum_probs=50.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .|...+.-..|..+..+.+.|...                         .+.|..-+.|++++..... . .+...    
T Consensus       131 ~f~~~p~~q~V~~~s~~~l~cr~p-------------------------e~~paae~~w~k~e~~~~p-d-~n~~~----  179 (909)
T KOG1480|consen  131 HFEQSPVGQEVQEETTLQLPCRPP-------------------------EGDPKAEVEWLKNEVVIDP-D-ANVIR----  179 (909)
T ss_pred             hhccChhhheecccccccccccCc-------------------------ccchhhhhhccccCCCCCc-c-ccchh----
Confidence            345566667788888888888863                         3455667899997654322 1 11110    


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                         .    ....|++..+...|.|+|+|++.+-
T Consensus       180 ---~----~d~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  180 ---A----SDHNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             ---h----hcCCccccchhhhhcccceeeeehh
Confidence               0    1117889999999999999999764

>PHA03273 envelope glycoprotein C; Provisional

Probab=94.65  E-value=1.9  Score=34.78  Aligned_cols=120  Identities=21%  Similarity=0.345  Sum_probs=65.7

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-eeee--eEeecCccEEEEE
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-AIHE--HVITNNARLSVTH   94 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~   94 (238)
                      ..+..|+...-.|.+.+.-+..                       ...+.|++++..... ....  .....++.++..+
T Consensus       245 ~PvL~Ge~y~A~C~aa~YYPp~-----------------------Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vS  301 (486)
T PHA03273        245 HPSLKGENYRAVCVVASYFPHS-----------------------SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRIS  301 (486)
T ss_pred             CccccCCCceEEEEeeeecCCC-----------------------ceEEEEEeCCeeccccccceeeEEEecCCceEEEE
Confidence            3577899999999998764332                       346999999876551 1111  1112223333333


Q ss_pred             cCCCeEEEEEcccCc-ccCeEEEEEEe--cCCCcc----eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941          95 NDANTWTLNIRSVRR-EDRGYYMCQVN--TNPMTK----QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT  167 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~-~d~G~Y~C~~~--~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  167 (238)
                            +|.+..... +..-..+|.+.  .+....    ..+.-.|..+|.+.+       ....|   ...|.+.--|.
T Consensus       302 ------tlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-------~F~~G---~AVCtA~CVP~  365 (486)
T PHA03273        302 ------TLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-------TVEDG---DAVCTAKCVPS  365 (486)
T ss_pred             ------EEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-------EEeCC---EEEEecccccC
Confidence                  676665433 44558999983  121111    112223334443332       23333   55687776665


Q ss_pred             --CeEEEEeCC
Q psy7941         168 --PKITWRRED  176 (238)
Q Consensus       168 --~~~~W~~~~  176 (238)
                        ..+.|..++
T Consensus       366 egV~l~W~v~D  376 (486)
T PHA03273        366 TGVFVSWSVND  376 (486)
T ss_pred             CCeeEEEEccC
Confidence              489998755

>PHA03042 CD47-like protein; Provisional

Probab=94.59  E-value=0.26  Score=36.56  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCe
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (238)
                      -.-++++.++|.+++..-..                     .....+.|..++.........                +.
T Consensus        28 T~CN~TV~IpC~v~n~~~~n---------------------i~~~~V~Wkf~~~~If~~n~t----------------n~   70 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYN---------------------ISNIHINWKFNNKVIFKKNNT----------------NT   70 (286)
T ss_pred             EecCceEEEEeecCChhhcC---------------------ccceEEEEEeCCeeEEEecCC----------------cc
Confidence            45789999999997742211                     124469999977654322111                11


Q ss_pred             EEEEEcccCcccCeEEEEEEec
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .+|.+.. ...-.|+|+|++.+
T Consensus        71 aSL~~~f-~~~l~GNYTCEv~~   91 (286)
T PHA03042         71 SSLKFNF-SKNLSGNYTCEAIN   91 (286)
T ss_pred             eEEEEec-cccCCCceeEEEee
Confidence            2555533 34458999999954

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.04  E-value=0.92  Score=28.68  Aligned_cols=43  Identities=21%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .|+....   .+.+|.|+.++..|+|.|.-++.+..+.-......|
T Consensus        62 ~r~~F~~---enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV  104 (108)
T PF11465_consen   62 NRFNFTS---ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV  104 (108)
T ss_dssp             HHEEEET---TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred             ceEeeec---cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence            3555543   344999999999999999999977655444444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.77  E-value=1.6  Score=34.50  Aligned_cols=41  Identities=10%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                      ...++.+.|++.+|.|.|.|...-.......-.+.|.+.|.
T Consensus        79 keYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK  119 (500)
T PHA02914         79 KEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK  119 (500)
T ss_pred             ceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence            45688899999999999999996544433333344444443

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.54  E-value=0.95  Score=27.19  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=16.0

Q ss_pred             eEEEEEeecCCCeEEEEEee
Q psy7941         199 VLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       199 ~l~i~~~~~~d~G~y~C~~~  218 (238)
                      .........+|+|.+.|.|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEc
Confidence            45556677899999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.87  E-value=1.4  Score=27.26  Aligned_cols=76  Identities=16%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             cEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         155 SAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       155 ~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+.-.|.+ .|.|++.|+|.-+-+........... ........ .+.+-.....|.-..+|.+.+... ....++.|.|
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~-~GT~TV~S-~y~lVPs~~~~gk~lTCvV~h~~~-~~~~~~~L~v   98 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQ-NGTVTVIS-RYRLVPSREAHKQKLTCIVNYRND-RFTDSVTLNV   98 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCC-CCCEEEEE-EEEEeECHHHcCCEeEEEEEeccc-cccccEEecC
Confidence            35668984 88999999998632222221111111 11111111 233333334444599999998754 4455665543

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.45  E-value=0.81  Score=35.52  Aligned_cols=21  Identities=24%  Similarity=0.714  Sum_probs=18.0

Q ss_pred             cEEEEEEEcc-ccCC-eEEEEeC
Q psy7941         155 SAKLVCKAKG-YPTP-KITWRRE  175 (238)
Q Consensus       155 ~~~l~C~~~~-~p~~-~~~W~~~  175 (238)
                      .+.|.|.+.| ||.. .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            4799999999 7766 8999995

>KOG4597|consensus

Probab=90.44  E-value=0.67  Score=37.37  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---eeeeeeeeEeec
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---AVLAIHEHVITN   86 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~~~~~~~~   86 (238)
                      .+...+....+..+++..++|.+.                          +.|.+.|+|-+.-..   +... ..+.+  
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~--------------------------G~q~r~V~c~qv~anr~~vv~~-~nq~~--  248 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQ--------------------------GRQYRVVTCEQVFANRENVVMR-PNQTV--  248 (560)
T ss_pred             ccccCcchhhcccchhhccccccc--------------------------CCcCceeeeehhhccccceeec-Ccccc--
Confidence            344445566677888888888874                          344667999875322   1111 11111  


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                       ++..+    .+...|.|.+....|+|.|+|.+.+. +.....+.+.+
T Consensus       249 -e~p~v----tstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s  291 (560)
T KOG4597|consen  249 -ENPVV----TSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS  291 (560)
T ss_pred             -CCcce----eeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence             11111    13458999999999999999999765 33333444433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.16  E-value=1.7  Score=33.75  Aligned_cols=17  Identities=18%  Similarity=0.245  Sum_probs=12.4

Q ss_pred             cCcccCeEEEEEEecCC
Q psy7941         107 VRREDRGYYMCQVNTNP  123 (238)
Q Consensus       107 ~~~~d~G~Y~C~~~~~~  123 (238)
                      +..++...|+|.+.+.+
T Consensus       288 v~~~~~~~Y~C~V~Hsg  304 (338)
T PHA02865        288 VPTDMSNQIVCVVFHST  304 (338)
T ss_pred             eCCCCCCCcEEEEEeCC
Confidence            44567778999997655

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.81  E-value=2.3  Score=26.18  Aligned_cols=72  Identities=11%  Similarity=0.317  Sum_probs=41.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ++...+..|.+++..|.+.+.-.                     .......+.|..++.. ..         ..+++...
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~---------------------~~~~a~~I~Wkln~~~-iP---------~~qy~~in   58 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCS---------------------HSVNASQIVWKLNGEK-IP---------GSQYRVIN   58 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCH---------------------CT-STTCEEEECSSCE-ST---------CGCEEEES
T ss_pred             cCCCEEeCCCCEEEEEEEECCCC---------------------CCcccceEEEEECCEE-CC---------hhHcceeC
Confidence            45556789999999999974211                     0134567999997663 32         22222221


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                        ....++++.+......-.|-|..
T Consensus        59 --~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   59 --DTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             --TTEEEEEESS--SSEEEEEEEEE
T ss_pred             --CeEEEEEEccCCCCCceEEEEEE
Confidence              12237778887777777888875

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=88.23  E-value=8  Score=28.04  Aligned_cols=97  Identities=19%  Similarity=0.316  Sum_probs=47.9

Q ss_pred             eEEEEeCCceeeeeeeeeE--eecCccEEEEEcCCCeEEEEE-cccCcccCeEEEEEEec--CCCccee----eEEEEEc
Q psy7941          65 KVAWIKADTKAVLAIHEHV--ITNNARLSVTHNDANTWTLNI-RSVRREDRGYYMCQVNT--NPMTKQM----AFLEVVI  135 (238)
Q Consensus        65 ~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~--~~~~~~~----~~l~v~~  135 (238)
                      .+.|+.++..+........  ...++.++..+      +|.+ .+...+..-..+|.+.=  +......    +.-.|..
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vS------tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~   81 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVS------TLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYP   81 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEE------EEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceec
Confidence            5899998875542221111  11123344333      7777 33444556689999831  1111111    1112333


Q ss_pred             CCcccccccCCceeecCCCcEEEEEEEccccC--CeEEEEeCCC
Q psy7941         136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPT--PKITWRREDN  177 (238)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~  177 (238)
                      +|.+..       ...+|   ...|.+.--|.  -.+.|..++.
T Consensus        82 ~P~vsv-------~F~~g---~AVC~A~CVP~~~v~l~W~v~d~  115 (211)
T PF02124_consen   82 KPRVSV-------RFEDG---YAVCTARCVPRGNVTLRWSVGDD  115 (211)
T ss_pred             CCEEEE-------EecCC---EEEEEcceeeCCCeEEEEEECCc
Confidence            333322       22223   56787766553  4899998443

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03052 Hypothetical protein; Provisional

Probab=86.33  E-value=3.6  Score=23.59  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA   75 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~   75 (238)
                      |+.+.+..|..+++.|.+.--.+                       .+.+.+.|.-++...
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g-----------------------~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPP-----------------------TTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCC-----------------------CcceEEEEEeCCcEE
Confidence            47788999999999999964222                       235678999987654

>KOG0613|consensus

Probab=82.81  E-value=4.6  Score=36.98  Aligned_cols=78  Identities=10%  Similarity=-0.037  Sum_probs=49.8

Q ss_pred             CceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+....+..+.+.|...+.+.|. +.|+.++........-  ............+.+..+...+.+.|.|.|.|..|..
T Consensus       342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~  419 (1205)
T KOG0613|consen  342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA--LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE  419 (1205)
T ss_pred             ceeccccCcceeecccccCCcCCchheeecccccccccccc--cccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence            334566778899999999988774 9999843322211100  0011111222346667788888999999999998854


Q ss_pred             c
Q psy7941         225 V  225 (238)
Q Consensus       225 ~  225 (238)
                      .
T Consensus       420 ~  420 (1205)
T KOG0613|consen  420 Q  420 (1205)
T ss_pred             c
Confidence            3

>PHA03052 Hypothetical protein; Provisional

Probab=82.27  E-value=4.4  Score=23.26  Aligned_cols=34  Identities=12%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             CceeecCCCcEEEEEEE-ccc--cCCeEEEEeCCCeee
Q psy7941         146 GDMMVPEGGSAKLVCKA-KGY--PTPKITWRREDNKEI  180 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~-~~~--p~~~~~W~~~~~~~~  180 (238)
                      ..+.+..|+.+++.|.+ .|.  ..+.+.|.. ++...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence            44678889999999998 343  355789987 44433

>PHA03240 envelope glycoprotein M; Provisional

Probab=80.80  E-value=2.7  Score=30.13  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=17.1

Q ss_pred             CeEEEEEcccCcccCeEEEEEE
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+.+|.|.++..+|.|+| |+-
T Consensus       103 ~NstL~i~~vn~sd~~nY-cr~  123 (258)
T PHA03240        103 HNSTLIIAHLNLSDAGEY-CRK  123 (258)
T ss_pred             ccceEEEEEEeecCcchh-hhc
Confidence            345999999999999999 443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		1e-09
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		8e-09
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-08
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		7e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-07
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		6e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		9e-07
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		4e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		5e-06
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		8e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		8e-06
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		2e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-05
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		7e-05
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		8e-05
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		9e-05
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		9e-05
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		9e-05
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		1e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-04
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		2e-04
4fs0_A	225	Crystal Structure Of Mutant F136d Of Mouse Nectin-2		2e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		3e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		7e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-04
1s3k_H	222	Crystal Structure Of A Humanized Fab (Hu3s193) In C		4e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		5e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		5e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		6e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		6e-04
4fmk_A	225	Crystal Structure Of Mouse Nectin-2 Extracellular F		7e-04

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 79  IHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD 138
           ++ +   N   L+ T  +A+     I   R ED G Y C  +     K  A +EV   PD
Sbjct: 35  MYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD 94
Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE 198
           I+  + S +    EG  A + CK+ GYP P+  WR+++N      SN  SS + F +  E
Sbjct: 95  ITGHKRSENK--NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN--SSGRFFIINKE 150
Query: 199 VLSLTKVTRSEM----GAYQCIAANGV 221
             +   +   ++    G Y+C A N +
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSI 177

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 81  EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS 140
           E +  N  R+SV  ND ++ TL I +   +D G Y C V     T+  A + V I   + 
Sbjct: 43  EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
            +         EG  A +VC       P I W+ +  +++I++ +     +   + +  L
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDV----RFIVLSNNYL 157
Query: 201 SLTKVTRSEMGAYQC---IAANG------------VPPTVSKR 228
            +  + +++ G Y+C   I A G            VPPTV  R
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR 200

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           L I +V     G + C        +Q    L V +PP    E T  D    +G  AK+ C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPT--DKAFAQGSDAKVEC 736
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
           KA G+P P++TW++          +   S  +  VE   L +  + ++  G Y C A NG
Sbjct: 737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI-RVEEGTLHVDNIQKTNEGYYLCEAING 795
Query: 221 VPPTVSKRLMLHVH 234
           +   +S  +M+ V 
Sbjct: 796 IGSGLSAVIMISVQ 809

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 28  FTCVVNNLGGHRVSSSV----------------TDTHVNTGGSIVFP---TDSSAMKVAW 68
           +TC   N  G   SS+V                 D H   G  + F      S  ++V+W
Sbjct: 76  YTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 69  IKADTKAVLAIHEHVITNNARL--SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-- 124
            K            ++ ++A L  S  HN A   TL I    +   G Y C   +NP+  
Sbjct: 136 YKDG---------ELLKDDANLQTSFIHNVA---TLQILQTDQSHVGQYNCSA-SNPLGT 182
Query: 125 ---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
              + ++   E  +PP    +  S D+ + E G+ K  C   G    KITW + DN+EI 
Sbjct: 183 ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI- 238
Query: 182 VRSNPPSSQKVFSVE-SEVLSLTKVTRSEMGAYQCIAAN 219
               P  + K+  VE +  L++ KVT+ + G Y C A+N
Sbjct: 239 ---RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 98  NTWTLNIRSVRREDRGYYMCQVN--TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
           N   L I SV   D G Y C  N       +    L+V + P I+      ++ + EG  
Sbjct: 60  NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI--NVKIIEGLK 117
Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
           A L C   G P P ++W + D+    +R N     ++  +ES  L +  V + + G Y+C
Sbjct: 118 AVLPCTTMGNPKPSVSWIKGDSA---LREN----SRIAVLESGSLRIHNVQKEDAGQYRC 170
Query: 216 IAANGVPPTVSKRLMLHVH 234
           +A N +    SK + L V 
Sbjct: 171 VAKNSLGTAYSKLVKLEVE 189

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 58  PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
           P  S  +  AWI          +E+    + R  V+    N   L I  V + D G Y C
Sbjct: 127 PPHSGELSYAWI---------FNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTC 174
Query: 118 QVNTNPMTKQMAFLEVVIPPD---------ISSEETSGDMMVPE------GGSAKLVCKA 162
            V TN +T      +V+ PP          +   E   ++  PE      G + KL C A
Sbjct: 175 VV-TNTVTNH----KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA 229
Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
            G P P I WRR D K I  ++    S       + +L +    + + G+Y+C+A N   
Sbjct: 230 LGNPVPTILWRRADGKPIARKARRHKS-------NGILEIPNFQQEDAGSYECVAENSRG 282
Query: 223 PTVSK 227
             V+K
Sbjct: 283 KNVAK 287

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 58  PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
           P  S  +  AWI          +E+    + R  V+    N   L I  V + D G Y C
Sbjct: 126 PPHSGELSYAWI---------FNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTC 173
Query: 118 QVNTNPMTKQMAFLEVVIPPD---------ISSEETSGDMMVPE------GGSAKLVCKA 162
            V TN +T      +V+ PP          +   E   ++  PE      G + KL C A
Sbjct: 174 VV-TNTVTNH----KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA 228
Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
            G P P I WRR D K I  ++    S       + +L +    + + G+Y+C+A N   
Sbjct: 229 LGNPVPTILWRRADGKPIARKARRHKS-------NGILEIPNFQQEDAGSYECVAENSRG 281
Query: 223 PTVSK 227
             V+K
Sbjct: 282 KNVAK 286

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 102 LNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           L +R++   D G Y+C+  N     ++ AFL+V + P I   +        E G   LVC
Sbjct: 60  LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNE---TTYENGQVTLVC 116
Query: 161 KAKGYPTPKITWRR--------EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA 212
            A+G P P+ITW+R        E +K +  R             S  L +  V  S+ G 
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG-----SSSLHIKDVKLSDSGR 171
Query: 213 YQCIAANGVPPTVSKRLMLHVHCTYL 238
           Y C AA+        R+  H    YL
Sbjct: 172 YDCEAAS--------RIGGHQKSMYL 189

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 119 VNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
           +N N +  + AFLE V      + P  +  +T  DM V EG +A+  CK +GYP P++ W
Sbjct: 18  INANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEVMW 75
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESE-----VLSLTKVTRSEMGAYQCIAANGV 221
            ++D        NP    + F ++ +      L++++V   +   Y C A N +
Sbjct: 76  FKDD--------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 119 VNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
           +N N +  + AFLE V      + P  +  +T  DM V EG +A+  CK +GYP P++ W
Sbjct: 18  INANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMDVVEGSAARFDCKVEGYPDPEVMW 75
Query: 173 RREDNKEIIVRSNPPSSQKVFSVESE-----VLSLTKVTRSEMGAYQCIAANGV 221
            ++D        NP    + F ++ +      L++++V   +   Y C A N +
Sbjct: 76  FKDD--------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 84  ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDISS 141
           IT + R  V+  + N +  N+ +    D+G Y C V++  +TK +   F+ ++  P+ ++
Sbjct: 53  ITMDKRRFVSQTNGNLYIANVEA---SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109
Query: 142 EETSGDMMVP-------EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           +    D++V         G +  L C A G P P I WR+       V    PS+ ++ S
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-------VLEPMPSTAEI-S 161
Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN 219
               VL +  +   + G Y+C A N
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAEN 186

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 81  EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS 140
           E +  N  R+SV  ND ++ TL I +   +D G Y C V     T+  A + V I   + 
Sbjct: 43  EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Query: 141 SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
            +         EG  A +VC       P I W+ +  +++I++ +     +   + +  L
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDV----RFIVLSNNYL 157
Query: 201 SLTKVTRSEMGAYQC 215
            +  + +++ G Y+C
Sbjct: 158 QIRGIKKTDEGTYRC 172

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL 202
           +  GD+ V EG   ++ CK  G PTP ++W+  D K +     P S+ K+   E+ V SL
Sbjct: 14  QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV----RPDSAHKMLVRENGVHSL 68
Query: 203 --TKVTRSEMGAYQCIAAN 219
               VT  + G Y CIA N
Sbjct: 69  IIEPVTSRDAGIYTCIATN 87

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 82  HVITNNARLSVTHNDANTWT---LNIRSVRREDRGYYMCQVNT---NPMTKQMAFLEVVI 135
            ++  N +++ ++ D  T+    +  +SV RED G Y C V+    N   +    L V++
Sbjct: 47  RLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV 106
Query: 136 PP-----DISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSS 189
           PP     +I S  T G+  V       L C  + G P  + TW     K+ IV    P S
Sbjct: 107 PPSKPTVNIPSSATIGNRAV-------LTCSEQDGSPPSEYTWF----KDGIVMPTNPKS 155
Query: 190 QKVFSVESEVLSLTK-------VTRSEMGAYQCIAANG 220
            + FS  S VL+ T        ++ S+ G Y C A NG
Sbjct: 156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           TL I SV  ED G Y C+   N   +      +++       +   D     G + +  C
Sbjct: 257 TLQIPSVSFEDEGTYECEAE-NSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGC 315
Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            A G P P + W R           P +SQ    V +  L  +K++  + G YQC+A N
Sbjct: 316 AAAGKPRPTVRWLR--------NGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAEN 366

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
           L+I++V  ED G Y C+   N   +      ++I       +   D     G   +  C 
Sbjct: 259 LHIQNVDFEDEGTYECEAE-NIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
           A G P P + W R+          P +SQ    V    L  +K+   + G YQC+A N
Sbjct: 318 ASGKPRPAVRWLRD--------GQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAEN 367

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
            PP I   E   D++V +G  A L CKA+G PTP I W +   + +    + P S ++  
Sbjct: 8   FPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 195 VESEVLSLTKV----TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
               +  L  V    +R + G Y C+A N +   VS    L V
Sbjct: 65  PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 26/180 (14%)
Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVR-REDRGYYMC----- 117
           ++ W+K   K           ++ R  V   +D     L I+ +R + D   Y C     
Sbjct: 37  RITWMKKGKK----------VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 118 --QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRR 174
             ++NT+   K     E  +PP   S +    + V E   +A ++C A G P P+I+W  
Sbjct: 87  LGEINTS--AKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW-- 142
Query: 175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              K+ +      S+ ++  + S  L +     S+ G Y+C+A N      S    L+V 
Sbjct: 143 --FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVR 200

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99  TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
           TW++ + SV   D+G Y C V         T Q+  +E      I       +  V  G 
Sbjct: 72  TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 131
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
           + + +CK    P P I W +  E N   I   N P  Q + +        E EVL L  V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 206 TRSEMGAYQCIAANGV 221
           +  + G Y C+A N +
Sbjct: 192 SFEDAGEYTCLAGNSI 207

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99  TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
           TW++ + SV   D+G Y C V         T Q+  +E      I       +  V  G 
Sbjct: 73  TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 132
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
           + + +CK    P P I W +  E N   I   N P  Q + +        E EVL L  V
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 192
Query: 206 TRSEMGAYQCIAANGV 221
           +  + G Y C+A N +
Sbjct: 193 SFEDAGEYTCLAGNSI 208

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 99  TWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
           TW++ + SV   D+G Y C V         T Q+  +E      I       +  V  G 
Sbjct: 72  TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGS 131
Query: 155 SAKLVCKAKGYPTPKITWRR--EDNKEIIVRSNPPSSQKVFSV-------ESEVLSLTKV 205
           + + +CK    P P I W +  E N   I   N P  Q + +        E EVL L  V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 206 TRSEMGAYQCIAANGV 221
           +  + G Y C+A N +
Sbjct: 192 SFEDAGEYTCLAGNSI 207

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
            PP I   E   D++V +G  A L CKA+G PTP I W +   + +    + P S ++  
Sbjct: 8   FPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLL 64
Query: 195 VESEVLSLTKV----TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
               +  L  V    +R + G Y C+A N +   VS    L V
Sbjct: 65  PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
           V +PP + + +++ +       S  L C A G+P P +TW + D + I    N    +  
Sbjct: 8   VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTK-DGEPIEQEDN--EEKYS 64
Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAAN 219
           F+ +   L + KV +S+   Y CIA N
Sbjct: 65  FNYDGSELIIKKVDKSDEAEYICIAEN 91

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDISSEETSGDMMVPEGGSAKLV 159
           +L+I+ V+  D G Y C+  +     Q + +L++   P   S +T       EG    + 
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI--YYSWEGNPINIS 121
Query: 160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-VLSLTKVTRSEMGAYQCIAA 218
           C  K  P   I WRR+   ++++ +   ++ K +S   + +L +   + ++ G Y C A 
Sbjct: 122 CDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 219 NGV 221
           N +
Sbjct: 179 NHI 181

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 87  NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVIPPDISSEETS 145
           + R+ V     ++ +L+I+ V+  D G Y C+  +     Q + +L++   P   S +T 
Sbjct: 51  DGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI 109
Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-VLSLTK 204
                 EG    + C  K  P   I WRR+   ++++ +   ++ K +S   + +L +  
Sbjct: 110 --YYSWEGNPINISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMILEIAP 164
Query: 205 VTRSEMGAYQCIAANGV 221
            + ++ G Y C A N +
Sbjct: 165 TSDNDFGRYNCTATNHI 181

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 102 LNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV 159
           L+++SV R D G Y CQV     T+  Q  +L V   P  + E    D+ VP     +L 
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPK--DLAVPPNAPFQLS 119
Query: 160 CKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA 218
           C+A G P P  I W R   K   +    PS          VL++T VT+S    + C A 
Sbjct: 120 CEAVGPPEPVTIVWWRGTTK---IGGPAPS--------PSVLNVTGVTQST--XFSCEAH 166
Query: 219 N 219
           N
Sbjct: 167 N 167

>pdb|4FS0|A Chain A, Crystal Structure Of Mutant F136d Of Mouse Nectin-2 Extracellular Fragment D1-D2 Length = 225

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 58  PTDSSAMKVAWIKADTKAVLAIHEHVITN-------NARLSV------THNDANTWTLNI 104
           PT     +V W + D   V A H     +         RLS       T+ D    TL  
Sbjct: 28  PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87
Query: 105 RSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
           R +R ED G Y C+  T+P    + + +L V+  P+ +  E     + P+  +       
Sbjct: 88  RGLRVEDEGNYTCEFATDPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARCVST 146
Query: 163 KGYPTPKITW 172
            G P  +ITW
Sbjct: 147 GGRPPARITW 156

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 50/211 (23%)
Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
           FL    NV   +G+DA+  C V+                       +P  S      W++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSG----------------------YPPPS----FTWLR 257
Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-TNPMTKQMA 129
            +    L   ++ +   + L +++            V  +D G Y C V   N      A
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLISN------------VTDDDSGTYTCVVTYKNENISASA 305
Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
            L V++PP   +  +  ++   E    +  C   G P P + W +  N ++++ S+    
Sbjct: 306 ELTVLVPPWFLNHPS--NLYAYESMDIEFECAVSGKPVPTVNWMK--NGDVVIPSD---- 357
Query: 190 QKVFS-VESEVLSLTKVTRSEMGAYQCIAAN 219
              F  V    L +  V +S+ G YQC+A N
Sbjct: 358 --YFQIVGGSNLRILGVVKSDEGFYQCVAEN 386

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
           T+   MV  G    L C A G PTP I W ++         + PS +  F   ++ L +T
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKG-------GDLPSDKAKFENFNKALRIT 280
Query: 204 KVTRSEMGAYQCIAAN 219
            V+  + G Y C+A+N
Sbjct: 281 NVSEEDSGEYFCLASN 296

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 24/179 (13%)
Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVR-REDRGYYMC------ 117
           ++ W+K   K         +++     +  +D     L I+ +R + D   Y C      
Sbjct: 38  RITWMKKGKK---------VSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSL 88
Query: 118 -QVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKGYPTPKITWRRE 175
            ++NT+   K     E  +P    + +    + V E G +A ++C A G P P+I+W   
Sbjct: 89  GEINTS--AKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW--- 143
Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             K+ +      S+ ++  + S  L +     S+ G Y+C+A N      S    L+V 
Sbjct: 144 -FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVR 201

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 61  SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
           S  +KV W K +T+    I E   ++  R+S   + A    L + ++  ED G Y C+  
Sbjct: 126 SPEIKVLWYKDETE----IQE---SSKFRMSFVESVA---VLEMYNLSVEDSGDYTCEAH 175
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           N          L+V  PP    +    + +  +G    L C+ +G P  +++W + D +E
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK-DKRE 232
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGV 221
           +        S K + + SE     + +  V  +++G YQC A+N V
Sbjct: 233 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP    +  S D+ + E G+ K  C   G    KITW + DN+EI     P  + K+  V
Sbjct: 5   PPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI----RPGGNYKMTLV 57
Query: 196 E-SEVLSLTKVTRSEMGAYQCIAAN 219
           E +  L++ KVT+ + G Y C A+N
Sbjct: 58  ENTATLTVLKVTKGDAGQYTCYASN 82

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 61  SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
           S  +KV W K +T+    I E   ++  R+S   + A    L + ++  ED G Y C+  
Sbjct: 126 SPEIKVLWYKDETE----IQE---SSKFRMSFVESVA---VLEMYNLSVEDSGDYTCEAH 175
Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           N          L+V  PP    +    + +  +G    L C+ +G P  +++W + D +E
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHK-DKRE 232
Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGV 221
           +        S K + + SE     + +  V  +++G YQC A+N V
Sbjct: 233 L-------RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP    +  S D+ + E G+ K  C   G    KITW + DN+EI     P  + K+  V
Sbjct: 5   PPFFDLKPVSVDLALGESGTFK--CHVTGTAPIKITWAK-DNREI----RPGGNYKMTLV 57
Query: 196 E-SEVLSLTKVTRSEMGAYQCIAAN 219
           E +  L++ KVT+ + G Y C A+N
Sbjct: 58  ENTATLTVLKVTKGDAGQYTCYASN 82

>pdb|1S3K|H Chain H, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex With The Lewis Y Tetrasaccharide Length = 222

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 76  VLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
           V AI ++  T   R +++  N  NT  L + S+R ED G Y C   T   +   A+    
Sbjct: 54  VGAITDYPDTVKGRFTISRDNSKNTLFLQMDSLRPEDTGVYFCARGTRDGS-WFAYWGQG 112
Query: 135 IPPDISSEETSGDMMVP--------EGGSAKLVCKAKGY-PTP-KITW 172
            P  +SS  T G  + P         GG+A L C  K Y P P  ++W
Sbjct: 113 TPVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 160

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
           ++V EG +A       G+P P+++W R+   ++I  S  P  Q  FS     L++  VT+
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVSWFRDG--QVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 208 SEMGAYQCIAANG 220
           +  G Y   A NG
Sbjct: 73  ANSGRYSLKATNG 85

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 109 REDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAKG 164
           + D G Y C+        ++ F ++++    PP IS  + S +     G      C+A G
Sbjct: 66  KSDEGIYRCEGRVE-ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 124
Query: 165 YPTPKITWRR-----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            P P I+W R     E+N++ I++ +           +  L++  +  S+ G Y C A N
Sbjct: 125 SPEPAISWFRNGKLIEENEKYILKGS-----------NTELTVRNIINSDGGPYVCRATN 173

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
           ++V EG +A       G+P P+++W R  + ++I  S  P  Q  FS     L++  VT+
Sbjct: 15  VVVLEGSTATFEAHISGFPVPEVSWFR--DGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 208 SEMGAYQCIAANG 220
           +  G Y   A NG
Sbjct: 73  ANSGRYSLKATNG 85

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 21/120 (17%)
Query: 109 REDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAKG 164
           + D G Y C+        ++ F ++++    PP IS  + S +     G      C+A G
Sbjct: 162 KSDEGIYRCEGRVEARG-EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG 220
Query: 165 YPTPKITWRR-----EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            P P I+W R     E+N++ I++ +              L++  +  S+ G Y C A N
Sbjct: 221 SPEPAISWFRNGKLIEENEKYILKGSNTE-----------LTVRNIINSDGGPYVCRATN 269

>pdb|4FMK|A Chain A, Crystal Structure Of Mouse Nectin-2 Extracellular Fragment D1-D2 Length = 225

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 16/130 (12%)
Query: 58  PTDSSAMKVAWIKADTKAVLAIHEHVITN-------NARLSV------THNDANTWTLNI 104
           PT     +V W + D   V A H     +         RLS       T+ D    TL  
Sbjct: 28  PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87
Query: 105 RSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
           R +R ED G Y C+  T P    + + +L V+  P+ +  E     + P+  +       
Sbjct: 88  RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPE-NHAEAQEVTIGPQSVAVARCVST 146
Query: 163 KGYPTPKITW 172
            G P  +ITW
Sbjct: 147 GGRPPARITW 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-54
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-31
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-41
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-39
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-36
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-14
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-36
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-34
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-09
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-34
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-33
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-31
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-30
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-29
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-29
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-27
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-27
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-15
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-27
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-27
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-27
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	4e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-27
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-27
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-27
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-26
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-25
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-07
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-26
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-26
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-26
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-25
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-25
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-24
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-08
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-25
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-25
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-25
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-25
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-07
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-24
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-21
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-24
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-23
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-22
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-06
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-21
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-20
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-20
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-20
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-20
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-15
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-19
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-19
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-18
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-18
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-15
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-18
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-08
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-17
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-17
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-15
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-15
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-15
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-15
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-15
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	9e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-07
2ens_A	96	Advanced glycosylation END product-specific recept	1e-14
2ens_A	96	Advanced glycosylation END product-specific recept	2e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-09
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-08
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-13
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	5e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-13
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	8e-07
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	7e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-12
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-12
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-11
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-09
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-11
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	9e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-10
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-10
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	9e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	4e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-10
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-04
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	1e-09
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-09
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	7e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	9e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	8e-07
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	3e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	9e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	3e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-06
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	1e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	9e-06
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	4e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-07
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	4e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	5e-07
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	5e-07
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	6e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	6e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	9e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-06
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	3e-06
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	3e-06
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	3e-06
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	3e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	4e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	5e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	5e-06
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	5e-06
3sob_L	237	Antibody light chain; beta propeller, protein bind	1e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-04
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	2e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-04
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	2e-05
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	4e-05
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	5e-05
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	6e-05
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	7e-05
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	8e-05
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	9e-05
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	1e-04
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	1e-04
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	1e-04
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	1e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-04
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	2e-04
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	2e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	2e-04
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	2e-04
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	3e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	3e-04
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	3e-04
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	3e-04
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	3e-04
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	3e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	3e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-04
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	4e-04
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	4e-04
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	5e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	5e-04
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	6e-04
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	7e-04
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	8e-04
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	9e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  176 bits (447), Expect = 1e-54
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 38/227 (16%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                      I+ G    F C V                           D+    ++W
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAG-------------------------DAKDKDISW 37

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
              +        E +  N  R+SV  ND ++ TL I +   +D G Y C V     T+  
Sbjct: 38  FSPNG-------EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
           A + V I   +  +         EG  A +VC       P I W+    +++I++ +   
Sbjct: 91  ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV-- 147

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV-SKRLMLHVH 234
             +   + +  L +  + +++ G Y+C         +  K + + V+
Sbjct: 148 --RFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  114 bits (288), Expect = 4e-31
 Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSSAM- 64
           A   DA I+ CVV    G +  ++V                     G   V   D  +  
Sbjct: 69  ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL 128

Query: 65  --KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN-- 120
              + W            + ++  + R  V  N+     L IR +++ D G Y C+    
Sbjct: 129 PPTIIWKHKG-------RDVILKKDVRFIVLSNN----YLQIRGIKKTDEGTYRCEGRIL 177

Query: 121 -TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
               +  +   + V +PP + + ++  +     G S  LVC A G+P P ++W ++   E
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG--E 235

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
            I        + +FS +S  L++  V +++   Y CIA N  G        + L V 
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG---EQDASIHLKVF 289

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  137 bits (345), Expect = 9e-41
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 57/226 (25%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
           + V   +G     TC  +                             +++  W  ++   
Sbjct: 3   KVVLGKKGDTVELTCTASQKK--------------------------SIQFHWKNSNQIK 36

Query: 76  VLAIHEHVITNN-------ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
           +L      +T         A    +  D   + L I++++ ED   Y+C+V       Q+
Sbjct: 37  ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL 96

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
               +    D           + +G S  L  ++    +P +  R    K I        
Sbjct: 97  LVFGLTANSDTH---------LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------- 139

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                    + LS++++   + G + C         V  ++ + V 
Sbjct: 140 ------QGGKTLSVSQLELQDSGTWTCTVLQNQ-KKVEFKIDIVVL 178

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  134 bits (339), Expect = 1e-39
 Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 44/229 (19%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           EP  +   E +           C + +     +                           
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMY------------------------SY 38

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           W K               N   L+ T  +A+     I   R ED G Y C  +     K 
Sbjct: 39  WTK---------------NGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKA 83

Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
            A +EV   PDI+  +        EG  A + CK+ GYP P+  WR+++N      SN  
Sbjct: 84  NATIEVKAAPDITGHKR--SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS 141

Query: 188 SSQKVFSVESE-VLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
               + + E+   L++  +  +E  G Y+C A N +  + S   +L V 
Sbjct: 142 GRFFIINKENYTELNIVNLQITEDPGEYECNATNSI-GSASVSTVLRVR 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  126 bits (318), Expect = 1e-36
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 37/211 (17%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                      I+ G    F C V                    G            ++W
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVA-------------------GDAKDKD------ISW 37

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
              +        E +  N  R+SV  ND ++ TL I +   +D G Y C V     T+  
Sbjct: 38  FSPNG-------EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
           A + V I   +  +         EG  A +VC       P I W+    +++I++ +   
Sbjct: 91  ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV-- 147

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
             +   + +  L +  + +++ G Y+C    
Sbjct: 148 --RFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSS 189
           L+V I P            +  G S   +C+  G      I+W    N E +  +    S
Sbjct: 3   LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFS-PNGEKLSPNQQRIS 53

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 +S  L++      + G Y+C+            + + + 
Sbjct: 54  VVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score =  126 bits (317), Expect = 4e-36
 Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 39/232 (16%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P +   +  G +    C                        +    D +A+ V W   D 
Sbjct: 7   PKDLYVVEYGSNMTIECKF---------------------PVEKQLDLAALIVYWEMEDK 45

Query: 74  KAVLAIHEHVITNNA------RLSVTHNDAN--TWTLNIRSVRREDRGYYMCQVNTNPMT 125
             +  +H              R  +  +  +     L I  V+ +D G Y C ++     
Sbjct: 46  NIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD 105

Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
            +   ++V  P +  ++     ++ P     +L C+A+GYP  ++ W   D++ +  ++ 
Sbjct: 106 YKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 163

Query: 186 PPSSQ---KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +S+   K+F+V S +    ++  +    + C       P  +    L + 
Sbjct: 164 TTNSKREEKLFNVTSTL----RINTTTNEIFYCTFRRLD-PEENHTAELVIP 210

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score =  118 bits (298), Expect = 1e-34
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V+G +  F    +NVT+ +G  AI TC V+                              
Sbjct: 3   VKGSQGQFPLT-QNVTVVEGGTAILTCRVDQNDNT------------------------- 36

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             + W     +  L   +     + R+ +     +  ++++  V   D G Y C + T P
Sbjct: 37  -SLQWSNPAQQ-TLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMP 94

Query: 124 MTKQMAFLEVVIPP 137
           +    A+L V+  P
Sbjct: 95  VKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 51.0 bits (122), Expect = 7e-09
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-----VLS 201
           ++ V EGG+A L C+        + W     + +              +         +S
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74

Query: 202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           ++ V+ S+ G Y C       P  + +  L V
Sbjct: 75  VSDVSLSDEGQYTCSLFTM--PVKTSKAYLTV 104

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  120 bits (302), Expect = 4e-34
 Identities = 34/212 (16%), Positives = 57/212 (26%), Gaps = 33/212 (15%)

Query: 18  VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK----ADT 73
           VT   G     T     +                            ++V+W K     + 
Sbjct: 1   VTAFLGERVTLTSYWRRVSL-----------------------GPEIEVSWFKLGPGEEQ 37

Query: 74  KAVLAIHEHVITNNARLSV---THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MA 129
             +  +H  VI            H  ANT+ L + +      G Y+C++           
Sbjct: 38  VLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE 97

Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
            L VV P  +S    S     P+     + C    +P P + W   +  E    +     
Sbjct: 98  HLSVVKPLTLS--VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            K       V     + +       C+  N  
Sbjct: 156 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 17/101 (16%)

Query: 150 VPEGGSAKLVCKAK---GYPTPKITWRREDNKEIIV-------------RSNPPSSQKVF 193
              G    L    +     P  +++W +    E  V                        
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S  +  L +T    S  G Y C    G    V+K+  L V 
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRMKLGE-TEVTKQEHLSVV 102

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  123 bits (310), Expect = 1e-33
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 34/194 (17%)

Query: 52  GGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVIT-------NNARLSVTHNDANTWT 101
           G ++      +   +++  W  ++   +L      +T       + A    +  D   + 
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
           L I++++ ED   Y+C+V       Q+    +    D           + +G S  L  +
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTH---------LLQGQSLTLTLE 119

Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           +    +P +  R    K I                 + LS++++   + G + C      
Sbjct: 120 SPPGSSPSVQCRSPRGKNI--------------QGGKTLSVSQLELQDSGTWTCTVLQNQ 165

Query: 222 PPTVSKRLMLHVHC 235
              V  ++ + V  
Sbjct: 166 -KKVEFKIDIVVLA 178

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 64.8 bits (157), Expect = 2e-12
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 46/230 (20%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           + V  F+         V   +G    F+  +            T   +   G + +  + 
Sbjct: 174 IVVLAFQK----ASSIVYKKEGEQVEFSFPLA----------FTVEKLTGSGELWWQAER 219

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
           ++   +WI  D K      + V T + +L +        TL     +    G     +  
Sbjct: 220 ASSSKSWITFDLKNKEVSVKRV-TQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR-REDNKE 179
                 Q   L V               M        L C+  G  +PK+    + +NKE
Sbjct: 279 KTGKLHQEVNLVV---------------MRATQLQKNLTCEVWGPTSPKLMLSLKLENKE 323

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
             V              S+      V   E G +QC+ ++     +   +
Sbjct: 324 AKV--------------SKREKAVWVLNPEAGMWQCLLSDSGQVLLESNI 359

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  111 bits (280), Expect = 8e-31
 Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 53/232 (22%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F   +      QG DA   C V                  +      P  +    V+W
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRV------------------SS----SPAPA----VSW 36

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
           +    + V  I ++      R ++  N+     L I ++ + D G Y C+        ++
Sbjct: 37  LY-HNEEVTTISDN------RFAMLANN----NLQILNINKSDEGIYRCEG-RVEARGEI 84

Query: 129 AF----LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
            F    + V +PP IS  + S +     G      C+A G P P I+W R + K I    
Sbjct: 85  DFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI---- 139

Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
              + + +    +  L++  +  S+ G Y C A N  G      K+  L V 
Sbjct: 140 -EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG---EDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 41/128 (32%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
                    N T  +G +  F+C                    +G     P  +    ++
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRA------------------SG----SPEPA----IS 131

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MT 125
           W +            +I  N +  +  ++     L +R++   D G Y+C+  TN     
Sbjct: 132 WFRNG---------KLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRA-TNKAGED 178

Query: 126 KQMAFLEV 133
           ++ AFL+V
Sbjct: 179 EKQAFLQV 186

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  109 bits (273), Expect = 8e-30
 Identities = 40/230 (17%), Positives = 67/230 (29%), Gaps = 44/230 (19%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           E  F+    N+T A+G      C +   G                            +V 
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQG-------------------------EPPEVH 36

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
           W++ D + +                  +      L I S++  D G Y C V        
Sbjct: 37  WLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV-FLGHQTF 94

Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVR 183
             Q  ++ +   P    E    D  V       L C+A+G P P  + W ++        
Sbjct: 95  VSQPGYVGLEGLPYFLEEPE--DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
            + P             SL     ++  ++ C A N    T S+   + V
Sbjct: 153 GHGPQ-----------RSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 147 DMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEI------IVRSNPPSSQKVFSVESEV 199
           ++    G +  L C+ +     P++ W R D + +        +      ++   +    
Sbjct: 11  NITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQ 69

Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           L +T +  S+ G YQC+   G    VS+   + + 
Sbjct: 70  LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  110 bits (276), Expect = 3e-29
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 40/221 (18%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSSAM- 64
           A   DA I+ C   +  G    ++V                     G         S+  
Sbjct: 67  ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP 126

Query: 65  --KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
              V+W+  +        E    ++ R ++  N+     L I ++ + D G Y C+    
Sbjct: 127 APAVSWLYHN-------EEVTTISDNRFAMLANN----NLQILNINKSDEGIYRCEG-RV 174

Query: 123 P----MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
                +  +   + V +PP IS  + S +     G      C+A G P P I+W R + K
Sbjct: 175 EARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGK 233

Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            I       + + +    +  L++  +  S+ G Y C A N
Sbjct: 234 LI-----EENEKYILKGSNTELTVRNIINSDGGPYVCRATN 269

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  104 bits (261), Expect = 4e-27
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 47/228 (20%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                 L  V ++ G    FTC                                   + W
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAI---------------------------GEPESIDW 37

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-- 126
                +         I +  R+ V      +  L I +   ED G Y CQ  T+   +  
Sbjct: 38  YNPQGE--------KIISTQRVVVQKEGVRS-RLTIYNANIEDAGIYRCQA-TDAKGQTQ 87

Query: 127 -QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
                LE+          +       +G  A++VC+    P P ++W    N+E+     
Sbjct: 88  EATVVLEIYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEV----T 140

Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             S  +   + +  L +  + +S+ G Y+C         +  R ++ +
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
           MA L+V I            + +  G S    C A G P   I W     ++I       
Sbjct: 2   MALLQVTISLS--------KVELSVGESKFFTCTAIGEPES-IDWYNPQGEKI------I 46

Query: 188 SSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S+Q+V   +      L++      + G Y+C A +    T    ++L ++
Sbjct: 47  STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 41/134 (30%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
                    N T  +G +  F+C                    +G     P       ++
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRA------------------SG----SPE----PAIS 227

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MT 125
           W +            +I  N +  +  ++     L +R++   D G Y+C+  TN     
Sbjct: 228 WFRNG---------KLIEENEKYILKGSNT---ELTVRNIINSDGGPYVCRA-TNKAGED 274

Query: 126 KQMAFLEVVIPPDI 139
           ++ AFL+V +    
Sbjct: 275 EKQAFLQVFVQHHH 288

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  113 bits (284), Expect = 7e-29
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 32/226 (14%)

Query: 29  TCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFPTDSSA----MKVAWI 69
           TCV  N  G+    S+                +     G  +            + + W 
Sbjct: 596 TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655

Query: 70  KADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQM 128
                         I+ +  ++ +        L I +V     G + C   N     +  
Sbjct: 656 LDGQ---------AISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
             L V +PP    E T  D    +G  AK+ CKA G+P P++TW++    +         
Sbjct: 707 TPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWKK-AVGDTPGEYKDLK 763

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 VE   L +  + ++  G Y C A NG+   +S  +M+ V 
Sbjct: 764 KSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  100 bits (249), Expect = 3e-24
 Identities = 51/236 (21%), Positives = 76/236 (32%), Gaps = 45/236 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           +  R   P      +  T+  G      CV                    G     PT  
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCVA------------------GG----NPT-- 458

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
              +++W   D K +     + +       VT N      LNI SV   D G Y C    
Sbjct: 459 --PEISWEL-DGKKIANNDRYQVGQY----VTVNGDVVSYLNITSVHANDGGLYKCIA-K 510

Query: 122 NPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           + +   +  A L V   P I   E      +  G +  + C   GYP   I W R DN+ 
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQME---KKAIVAGETLIVTCPVAGYPIDSIVWER-DNRA 566

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
           +      P ++K     +  L +  V R+     Y C+A N    +    L + V 
Sbjct: 567 L------PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 90.4 bits (224), Expect = 6e-21
 Identities = 38/238 (15%), Positives = 69/238 (28%), Gaps = 47/238 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             +   +    + +G  A+  C++ +     V                         V+W
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-----------------------VSW 175

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT-- 125
              + +     +      + +  V  +      L+IR V  ED    Y C+   + +T  
Sbjct: 176 HTDEEE----NYFPGAEYDGKYLVLPSG----ELHIREVGPEDGYKSYQCRT-KHRLTGE 226

Query: 126 -KQMAFLEVVI--------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
            +  A    ++         P + S             +  L+C A+GYP P   W +  
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286

Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 R             S  L +      + G Y C+  N V    S   +L V 
Sbjct: 287 EG--TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV-GGESVETVLTVT 341

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 59/223 (26%), Positives = 86/223 (38%), Gaps = 48/223 (21%)

Query: 21  AQGRDA-IFTCVVNN-LGGHRVSSSVT------------DTHVNTGGSIVFPTDSSAM-- 64
           A   D+  + CVVNN +GG  V + +T               V+ G   VF    +    
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372

Query: 65  -KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             V+W+K               +   +  + +      L I SV++ED+G Y C V  N 
Sbjct: 373 KTVSWMK---------------DGKAIGHSES-----VLRIESVKKEDKGMYQCFV-RND 411

Query: 124 MTKQMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
                A  E+ +     PP I       +  +  G S  L C A G PTP+I+W   D K
Sbjct: 412 RESAEASAELKLGGRFDPPVIRQAFQ--EETMEPGPSVFLKCVAGGNPTPEISWEL-DGK 468

Query: 179 EIIVRSNPPSSQKVFSVESEVLSL--TKVTRSEMGAYQCIAAN 219
           +I         Q V      V  L  T V  ++ G Y+CIA +
Sbjct: 469 KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 17/142 (11%)

Query: 102 LNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK 157
           +N+ + R +    +           Q             P    E T+  +       A+
Sbjct: 1   MNMPNERLKWLMLFAAVA-LIACGSQTLAANPPDADQKGPVFLKEPTN-RIDFSNSTGAE 58

Query: 158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM------G 211
           + CKA G P P+I W R D   +                   L        +        
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAV-----GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113

Query: 212 AYQCIAANGVPPTVSKRLMLHV 233
            Y C+A N     +S+ + +  
Sbjct: 114 VYACLARNQFGSIISRDVHVRA 135

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 37/132 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P ++    +   AQG DA   C                     G    FP      +V W
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKA------------------DG----FPK----PQVTW 748

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            KA            +  +  + V        TL++ ++++ + GYY+C+   N +    
Sbjct: 749 KKAVGD--TPGEYKDLKKSDNIRVEEG-----TLHVDNIQKTNEGYYLCEA-INGIGSGL 800

Query: 126 KQMAFLEVVIPP 137
             +  + V    
Sbjct: 801 SAVIMISVQAHH 812

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  109 bits (273), Expect = 1e-27
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 31/243 (12%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVT------------DTHVNTGGSI 55
           E   +   E   + +       C   N  G   +   T               +  G  +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245

Query: 56  VF----PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
                    +    + W   +      + E      +  S            + SV R D
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKA----LEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
            GYY C   +   ++  A + +V    I++  +S D  + +        + K YP  + T
Sbjct: 302 TGYYTCSS-SKHPSQS-ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
           W                 ++        +S     + + G Y   A N      +K   L
Sbjct: 360 WTFSR--------KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMFTL 410

Query: 232 HVH 234
           ++ 
Sbjct: 411 NIR 413

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 87.8 bits (217), Expect = 3e-20
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 49/238 (20%)

Query: 21  AQGRDA-IFTCVVNNLGGH------------RVSSSVTDTHVNTGGSIVFPTDSSAM--- 64
               D   +TC  +                   ++S  D  ++      F     A    
Sbjct: 297 VARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNP 123
           +  W  +                 +        N ++++     +   G Y+    N + 
Sbjct: 357 RCTWTFSR---------KSFPCEQKGLD-----NGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
              +M  L +   P +          + E  +++  C + GYP P  TW++  +K     
Sbjct: 403 QFTKMFTLNIRRKPQV----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452

Query: 184 SNPPS-------SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                       ++KVF       +L      +    +C A N +  T  + ++L+  
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSL-GTSCETILLNSP 509

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 79.4 bits (195), Expect = 3e-17
 Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 33/218 (15%)

Query: 29  TCVVNNLGGHRVSSSV---------TDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAV 76
             V  +      +                V+   SI           +   W+   +   
Sbjct: 31  PMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS-- 88

Query: 77  LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
                  +       + +    +  + I  +     G Y+  +  +  T       V I 
Sbjct: 89  -------LNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFI-QSEATNYTILFTVSIR 138

Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
             +            E   A LVC ++  P P + W   D+      S    S  V   E
Sbjct: 139 NTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDS---QGESCKEESPAVVKKE 194

Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +VL             +C A N +    ++   + ++
Sbjct: 195 EKVLH-----ELFGTDIRCCARNELGRECTRLFTIDLN 227

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 10/118 (8%)

Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
                      Y   V+ +P     A L       +        + V    S  L     
Sbjct: 19  NNDSSVGKSSSYPM-VSESPEDLGCA-LRPQSSGTVYEAAA---VEVDVSASITLQVLVD 73

Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                   W  + +       N      + +     + + K+T ++ G Y     +  
Sbjct: 74  APGNISCLWVFKHS-----SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score =  101 bits (252), Expect = 1e-27
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 27/135 (20%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                  E +T+ +G+     CV +                                + W
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNS--------------------------SLQW 35

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
           +       + ++E+ +  N++  + H+ AN  ++ + +V  +D G Y C   ++ ++ + 
Sbjct: 36  LTPSGF-TIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE 94

Query: 129 AFLEVVIPPDISSEE 143
             + V+         
Sbjct: 95  VKVIVLATMKGEFCR 109

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 57.3 bits (138), Expect = 6e-11
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV-----LS 201
            + V EG +  L C         + W       I +   P      + +         ++
Sbjct: 10  TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT 69

Query: 202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +  VT  + G Y+C+  +      +K + + V
Sbjct: 70  VPNVTLQDEGVYKCLHYSD--SVSTKEVKVIV 99

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  103 bits (258), Expect = 1e-27
 Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 50/229 (21%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P    PLE V       A F C V     +                   P       ++W
Sbjct: 8   PVITTPLETVDALVEEVATFMCAVE---SY-------------------PQPE----ISW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            +            +   + R S+  N      L I SV   D G Y C    N +    
Sbjct: 42  TRNK--------ILIKLFDTRYSIRENGQ---LLTILSVEDSDDGIYCCTA-NNGVGGAV 89

Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
           +    L+V + P I+      ++ + EG  A L C   G P P ++W +  +  +     
Sbjct: 90  ESCGALQVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSAL----- 141

Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              + ++  +ES  L +  V + + G Y+C+A N +    SK + L V 
Sbjct: 142 -RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
           ++   P I++      +       A  +C  + YP P+I+W R +   I        ++ 
Sbjct: 3   KLPKAPVITTPLE--TVDALVEEVATFMCAVESYPQPEISWTR-NKILI----KLFDTRY 55

Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 ++L++  V  S+ G Y C A NGV   V     L V 
Sbjct: 56  SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score =  101 bits (251), Expect = 3e-27
 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 7   FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV 66
            + D      + T+  G   +  C V +     +                          
Sbjct: 37  SQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSL-------------------------- 70

Query: 67  AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
            W     +  L   E     + R+ +  +  +  +++I +V   D G Y C + T P+  
Sbjct: 71  QWSNPAQQ-TLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRT 129

Query: 127 QMAFLEVVIPPD 138
             + + V+  P 
Sbjct: 130 AKSLVTVLGIPQ 141

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
             +      S+  + D  V  GG+  L C+ K +    + W     + +           
Sbjct: 32  ADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDN 91

Query: 192 VFSVESEV-----LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
              + +       +S++ V  ++ G Y C       P  + + ++ V
Sbjct: 92  RIQLVTSTPHELSISISNVALADEGEYTCSIFTM--PVRTAKSLVTV 136

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  105 bits (263), Expect = 3e-27
 Identities = 43/218 (19%), Positives = 62/218 (28%), Gaps = 47/218 (21%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F   L N+ +    +A   C V                          T      V W
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKV--------------------------TGHPKPIVKW 38

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
            +          + +I +  +  +         L I SV  +D   Y  +  N       
Sbjct: 39  YRQG--------KEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90

Query: 128 MAFLEVVIPPDIS---SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
            A LEV +P  I    + E  G +    G    +     G P P ITW++     I    
Sbjct: 91  TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLI---- 145

Query: 185 NPPSSQKVFSVESEVLSLT---KVTRSEMGAYQCIAAN 219
              +      V     SL     V R + G Y   A N
Sbjct: 146 -DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           + P    E    ++ V    +A LVCK  G+P P + W R   KEII         ++  
Sbjct: 3   MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIA---DGLKYRIQE 56

Query: 195 VESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +     L    VT  +   YQ  A N    +VS    L V 
Sbjct: 57  FKGGYHQLIIASVTDDDATVYQVRATNQG-GSVSGTASLEVE 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 23/139 (16%), Positives = 37/139 (26%), Gaps = 38/139 (27%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VP +   P  L  +  V   +G                                   +  
Sbjct: 98  VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--------------------------SGK 131

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               + W K            +I NN    V    + T  +    V R+D G+Y+     
Sbjct: 132 PDPVITWQKGQ---------DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA-K 181

Query: 122 NPM--TKQMAFLEVVIPPD 138
           N     ++   L+V   PD
Sbjct: 182 NRFGIDQKTVELDVADVPD 200

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  105 bits (262), Expect = 5e-27
 Identities = 36/232 (15%), Positives = 65/232 (28%), Gaps = 23/232 (9%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              +   +++    G D +  C   N       + VT      G        + +M V  
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV-- 72

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
                         +     R+          T+ +  +  ED G Y+C+  T P   + 
Sbjct: 73  ------------SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE 120

Query: 129 AF--LEVVIPPDISSEETSGDMMV---PEGGSAKLVCK-AKGYPTPKITWRREDNKEIIV 182
           +   L V+  P    E T   +      +       C  A G P   ++W          
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK-GEAE 179

Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                +     +V S    L     +   +  CI    +     + L L+V 
Sbjct: 180 YQEIRNPNGTVTVIS-RYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQ 229

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 78.3 bits (192), Expect = 3e-17
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 13/154 (8%)

Query: 83  VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISS 141
                   +            +   R   +    C V       K+   L V   P+++ 
Sbjct: 177 EAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTI 236

Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
           E   G+    +    KL CKA   P   +  W   +             + V +    + 
Sbjct: 237 EGFDGNW-YLQRMDVKLTCKADANPPATEYHWTTLNG---------SLPKGVEAQNRTLF 286

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               +  S  G Y C A N +  T S ++ +++ 
Sbjct: 287 FKGPINYSLAGTYICEATNPI-GTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 38/138 (27%)

Query: 28  FTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFP--TDSS--AMKVAW 68
             C+VN     R   S+T                        +      D++  A +  W
Sbjct: 209 LACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW 267

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
                             N  L       N        +     G Y+C+  TNP+    
Sbjct: 268 TT---------------LNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA-TNPIGTRS 311

Query: 127 QMAFLEVVIPPDISSEET 144
               + +     +     
Sbjct: 312 GQVEVNITEAAALEHHHH 329

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  105 bits (263), Expect = 9e-27
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           +P  +   +N T  +       C                     G     P      ++ 
Sbjct: 1   QPHIIQL-KNETTYENGQVTLVCDA------------------EG----EPIP----EIT 33

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTK 126
           W +A         E   + + R+ V     ++ +L+I+ V+  D G Y C+  +     +
Sbjct: 34  WKRAVDG--FTFTEGDKSLDGRIEVKGQHGSS-SLHIKDVKLSDSGRYDCEAASRIGGHQ 90

Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
           +  +L++   P   S +T       EG    + C  K  P   I WRR D   +  ++  
Sbjct: 91  KSMYLDIEYAPKFISNQT--IYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKNTT 147

Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                    +  +L +   + ++ G Y C A N +
Sbjct: 148 NLKTYSTGRKM-ILEIAPTSDNDFGRYNCTATNHI 181

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLT 203
           +    E G   LVC A+G P P+ITW+R  +       +     ++          L + 
Sbjct: 9   NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 68

Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            V  S+ G Y C AA+ +     K + L + 
Sbjct: 69  DVKLSDSGRYDCEAASRI-GGHQKSMYLDIE 98

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 19/132 (14%), Positives = 27/132 (20%), Gaps = 37/132 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+         +G     +C V                            +    + W
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDV------------------KS--------NPPASIHW 134

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            +               N   L           L I      D G Y C   TN +    
Sbjct: 135 RRDK-------LVLPAKNTTNLKTYSTGRKM-ILEIAPTSDNDFGRYNCTA-TNHIGTRF 185

Query: 127 QMAFLEVVIPPD 138
           Q   L +   P 
Sbjct: 186 QEYILALADVPS 197

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  102 bits (257), Expect = 2e-26
 Identities = 49/224 (21%), Positives = 70/224 (31%), Gaps = 51/224 (22%)

Query: 1   MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
           M P     P F     +V +A G    F C V    G                       
Sbjct: 3   MAP-----PFFDLKPVSVDLALGESGTFKCHVT---GT---------------------- 32

Query: 61  SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
            + +K+ W K +           I       +T  +    TL +  V + D G Y C   
Sbjct: 33  -APIKITWAKDN---------REIRPGGNYKMTLVENTA-TLTVLKVTKGDAGQYTCYAS 81

Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           N        A L V  PP    +      +V +    +  CK  G P  K+ W + D  E
Sbjct: 82  NVAGKDSCSAQLGVQEPPRFIKKLEP-SRIVKQDEHTRYECKIGGSPEIKVLWYK-DETE 139

Query: 180 IIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGV 221
           I       SS+   S      VL +  ++  + G Y C A N  
Sbjct: 140 I-----QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 98.7 bits (246), Expect = 6e-25
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 48/215 (22%)

Query: 9   PDFLYPLENV-TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           P F+  LE    + Q     + C +                   G     P     +KV 
Sbjct: 99  PRFIKKLEPSRIVKQDEHTRYECKI------------------GG----SPE----IKVL 132

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTK 126
           W K +T          I  +++  +     +   L + ++  ED G Y C+  N      
Sbjct: 133 WYKDET---------EIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182

Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
               L+V  PP    +     +   +G    L C+ +G P  +++W + D +E+      
Sbjct: 183 SSTSLKVKEPPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHK-DKREL-----R 234

Query: 187 PSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
              +     E+ + S+    V  +++G YQC A+N
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 67.8 bits (166), Expect = 9e-14
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP    +     + +  G S    C   G    KITW + DN+EI       + +     
Sbjct: 5   PPFFDLK--PVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI---RPGGNYKMTLVE 58

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +  L++ KVT+ + G Y C A+N      S    L V 
Sbjct: 59  NTATLTVLKVTKGDAGQYTCYASNVA-GKDSCSAQLGVQ 96

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 39/127 (30%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F      V   +G D    C +                   G     P      +V+W
Sbjct: 193 PVFRKKPHPVETLKGADVHLECEL------------------QG----TPP----FQVSW 226

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K             + +  +  +   +    +++I +V   D G Y C+  +N +    
Sbjct: 227 HKDK---------RELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKA-SNDVGSYT 275

Query: 127 QMAFLEV 133
            +  + +
Sbjct: 276 CVGSITL 282

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  100 bits (251), Expect = 2e-26
 Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 47/236 (19%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P + +  A+G  A   C        + + S              P D   + + W+ + +
Sbjct: 6   PEQRIEKAKGETAYLPC--------KFTLS--------------PEDQGPLDIEWLISPS 43

Query: 74  KAVLAIHEHVITNNA------------RLSVTHND--ANTWTLNIRSVRREDRGYYMCQV 119
              +     ++ +              R+  T ND  +   ++N+ +++  D G Y C+V
Sbjct: 44  DNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV 103

Query: 120 NTNPMTKQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDN 177
              P        L V++ P  +      D     G   KL C+ K G    +  W++  +
Sbjct: 104 KKAPGVANKKFLLTVLVKPSGT--RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161

Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
                 S    +  +  + S V+S+   +    G Y C   N V  +    L L V
Sbjct: 162 ------SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV-GSDQCMLRLDV 210

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  105 bits (263), Expect = 3e-26
 Identities = 51/240 (21%), Positives = 80/240 (33%), Gaps = 53/240 (22%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           +  R   P F   L++V    G    F C +N   G                        
Sbjct: 95  IKERKLPPSFARKLKDVHETLGFPVAFECRIN---GS-------------------EPLQ 132

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               V+W K            ++ ++A L  +    N  TL I    +   G Y C   +
Sbjct: 133 ----VSWYK---------DGELLKDDANLQTSFIH-NVATLQILQTDQSHVGQYNCSA-S 177

Query: 122 NPMTKQMAFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
           NP+    +  ++ +     PP    +     + +  G S    C   G    KITW + D
Sbjct: 178 NPLGTASSSAKLTLSEHEVPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-D 234

Query: 177 NKEIIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           N+EI      P      ++      L++ KVT+ + G Y C A+N      S    L V 
Sbjct: 235 NREI-----RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA-GKDSCSAQLGVQ 288

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  103 bits (258), Expect = 1e-25
 Identities = 35/217 (16%), Positives = 65/217 (29%), Gaps = 48/217 (22%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F      V   +G D    C +                   G     P      +V+W
Sbjct: 385 PVFRKKPHPVETLKGADVHLECEL------------------QG----TPP----FQVSW 418

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K             + +  +  +   +    +++I +V   D G Y C+  +N +    
Sbjct: 419 HKDK---------RELRSGKKYKIMSEN-FLTSIHILNVDSADIGEYQCKA-SNDVGSDT 467

Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
            +  + +  PP    +    D+    G   +L    +G     + W + D  EI+     
Sbjct: 468 CVGSITLKAPPRFVKK--LSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIV----R 520

Query: 187 PSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
            S     S    + +L   +   +  G Y C   N  
Sbjct: 521 ESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 99.1 bits (247), Expect = 5e-24
 Identities = 45/219 (20%), Positives = 67/219 (30%), Gaps = 42/219 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           +      P F     +V +A G    F C V                  TG         
Sbjct: 191 LSEHEVPPFFDLKPVSVDLALGESGTFKCHV------------------TG----TAPIK 228

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
               + W K + +         I       +T  +    TL +  V + D G Y C   N
Sbjct: 229 ----ITWAKDNRE---------IRPGGNYKMTLVENTA-TLTVLKVTKGDAGQYTCYASN 274

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
                   A L V  PP    ++     +V +    +  CK  G P  K+ W + D  EI
Sbjct: 275 VAGKDSCSAQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEI 332

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
                    +  F     VL +  ++  + G Y C A N
Sbjct: 333 ---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 52/218 (23%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+ PLE+V  A G      C V                   G     P     +++AW
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKV------------------DG----TPE----IRIAW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K  TK         + +     +   + N  +L I  V   D G Y C+   N +    
Sbjct: 40  YKEHTK---------LRSAPAYKMQFKN-NVASLVINKVDHSDVGEYTCKA-ENSVGAVA 88

Query: 129 AFLEVVI-----PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           +   +VI     PP  + +    D+    G      C+  G    +++W + D + +   
Sbjct: 89  SSAVLVIKERKLPPSFARKLK--DVHETLGFPVAFECRINGSEPLQVSWYK-DGELL--- 142

Query: 184 SNPPSSQKVFSVESEV--LSLTKVTRSEMGAYQCIAAN 219
                +    S    V  L + +  +S +G Y C A+N
Sbjct: 143 --KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP     E    +    G    L CK  G P  +I W + ++ ++    + P+ +  F  
Sbjct: 5   PPYF--IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKL---RSAPAYKMQFKN 58

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN 219
               L + KV  S++G Y C A N
Sbjct: 59  NVASLVINKVDHSDVGEYTCKAEN 82

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 38/128 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+  L +++   G +      +                            +  + VAW
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATI--------------------------EGAEPISVAW 511

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K            ++  +  + +++++ N  TL        + G Y CQ+  N     +
Sbjct: 512 FKDK--------GEIVRESDNIWISYSE-NIATLQFSRAEPANAGKYTCQI-KNEAGTQE 561

Query: 127 QMAFLEVV 134
             A L V+
Sbjct: 562 CFATLSVL 569

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 99.8 bits (249), Expect = 3e-26
 Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 50/218 (22%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F  PL++V + +G  A F   +                  +G    FP      +V+W
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHI------------------SG----FPV----PEVSW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            + D + +       +                 L I +V + + G Y  +  TN      
Sbjct: 40  FR-DGQVISTSTLPGVQ-------ISFSDGRAKLTIPAVTKANSGRYSLKA-TNGSGQAT 90

Query: 127 QMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
             A L V     PP+         M V +G   +L  +  G PTP + + R D  EI   
Sbjct: 91  STAELLVKAETAPPNFVQRLQ--SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEI--- 144

Query: 184 SNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
               S     S E ++ SL   +    + G Y   A N
Sbjct: 145 --QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
               P  +       ++V EG +A       G+P P+++W R+     I  S  P  Q  
Sbjct: 2   TTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFRDGQV--ISTSTLPGVQIS 57

Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           FS     L++  VT++  G Y   A NG 
Sbjct: 58  FSDGRAKLTIPAVTKANSGRYSLKATNGS 86

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 37/126 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P+F+  L+++T+ QG        V                  TG     PT      V +
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRV------------------TG----IPT----PVVKF 137

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQ 127
            +             I ++    ++  + + ++L I     ED G Y     N+      
Sbjct: 138 YRDG---------AEIQSSLDFQISQ-EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187

Query: 128 MAFLEV 133
            A L V
Sbjct: 188 TAELLV 193

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  102 bits (255), Expect = 3e-26
 Identities = 32/236 (13%), Positives = 61/236 (25%), Gaps = 36/236 (15%)

Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
            +     V    G      C +                            +   ++ W +
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPN---------------------MEVTHVSQLTWAR 41

Query: 71  ADTKAVLAI----HEHVITNNARLSVTHNDANT----WTLNIRSVRREDRGYYMCQVNTN 122
                 +A+         + + RL              +L +  +R ED G Y C   T 
Sbjct: 42  HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTF 101

Query: 123 PMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKE 179
           P        +L V+  P  +       + +         C +  G P  +ITW  +    
Sbjct: 102 PQGSRSVDIWLRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGM 159

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHVH 234
                 P       +V S +  L   ++ +     C   +          + L V+
Sbjct: 160 PNTSQVPGFLSGTVTVTS-LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 77.8 bits (191), Expect = 3e-17
 Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 43/232 (18%)

Query: 25  DAIFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVFPTDSS----AMKV 66
           +  +TC+         S  +                  +      +    S+      ++
Sbjct: 91  EGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI 150

Query: 67  AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
            W   D   +    +     +  ++VT          +    + D     C+V  +   +
Sbjct: 151 TWHS-DLGGMPNTSQVPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKV-EHESFE 202

Query: 127 QM----AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEII 181
           +       L V  PP++S      +        A L C A+  P P    W         
Sbjct: 203 KPQLLTVNLTVYYPPEVSISGYD-NNWYLGQNEATLTCDARSNPEPTGYNWSTTM----- 256

Query: 182 VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
               PP +      +   L +  V +       C   N +       L + V
Sbjct: 257 -GPLPPFAV----AQGAQLLIRPVDKPINTTLICNVTNAL-GARQAELTVQV 302

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =   99 bits (249), Expect = 3e-26
 Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 55/243 (22%)

Query: 3   PVRGF-EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           P  G+ +P        V + +G+  +  C                               
Sbjct: 2   PGSGYLDPFPPEERPEVRVKEGKGMVLLCDPP--YHF----------------------P 37

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
             +   W+  +           IT + R  V+  + N   L I +V   D+G Y C V +
Sbjct: 38  DDLSYRWLLNE-------FPVFITMDKRRFVSQTNGN---LYIANVEASDKGNYSCFV-S 86

Query: 122 NPMT---KQMAFLEVVIPPDISSEETS-------GDMMVPEGGSAKLVCKAKGYPTPKIT 171
           +P         F+ ++  P+ +++           D+    G +  L C A G P P I 
Sbjct: 87  SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIR 146

Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
           WR+           P  S    S    VL +  +   + G Y+C A N        +  +
Sbjct: 147 WRKVL--------EPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR-GKDKHQARI 197

Query: 232 HVH 234
           +V 
Sbjct: 198 YVQ 200

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  103 bits (259), Expect = 4e-26
 Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 48/220 (21%)

Query: 3   PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
           P    +  FL    NV   +G+DA+  C V+                   G    P+   
Sbjct: 216 PGLHRQLYFLQRPSNVIAIEGKDAVLECCVS-------------------GYPP-PS--- 252

Query: 63  AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NT 121
                W++ +    L   ++ +   +             L I +V  +D G Y C V   
Sbjct: 253 ---FTWLRGEEVIQLRSKKYSLLGGS------------NLLISNVTDDDSGTYTCVVTYK 297

Query: 122 NPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEII 181
           N      A L V++PP   +     ++   E    +  C   G P P + W +  +    
Sbjct: 298 NENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV--- 352

Query: 182 VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                  S     V    L +  V +S+ G YQC+A N  
Sbjct: 353 ----VIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA 388

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 98.0 bits (244), Expect = 5e-24
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 42/230 (18%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F+    +    +G + +  C                           P       + W
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAE-------------------SDRGVPV------IKW 56

Query: 69  IKADTKAVLAIHEHV-ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---M 124
            K      L + +      N  L + +       +      + D G Y C+ +      +
Sbjct: 57  KKDGLILALGMDDRKQQLPNGSLLIQN-------ILHSRHHKPDEGLYQCEASLGDSGSI 109

Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
             + A + V  P    S+     +    G +  L C+  G P P I W++ + +++   +
Sbjct: 110 ISRTAKVMVAGPLRFLSQTE--SITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDL---N 163

Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             P   +V  + S  L ++++   + G Y+C A N           + + 
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 42/130 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P FL    N+   +  D  F C V                  +G     P       V W
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAV------------------SG----KPV----PTVNW 346

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
           +K            V+  +    +         L I  V + D G+Y C    N     +
Sbjct: 347 MKNG---------DVVIPSDYFQIVGGS----NLRILGVVKSDEGFYQCVA-ENEAGNAQ 392

Query: 127 QMAFLEVVIP 136
             A L V  P
Sbjct: 393 SSAQLIVPKP 402

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  101 bits (253), Expect = 2e-25
 Identities = 43/230 (18%), Positives = 67/230 (29%), Gaps = 49/230 (21%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           EP   Y  +++    G   +  C+                          P         
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMY------------------GS----NPMGY----PN 245

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK- 126
           + K          + V  N       HN  +   L  ++   ED G Y C+V  N + K 
Sbjct: 246 YFKNG--------KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV-DNGVGKP 296

Query: 127 --QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
                 L VV  P    +     ++V +G    + CK  G P P + W            
Sbjct: 297 QKHSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK------- 348

Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             P S    +V    L +  V   + G Y C A N          ++ V+
Sbjct: 349 --PLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEH-GDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 34/237 (14%), Positives = 61/237 (25%), Gaps = 35/237 (14%)

Query: 27  IFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVF----PTDSSAMKVAW 68
            + C      G   S  ++              +     G         P       + W
Sbjct: 76  HYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW 135

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--- 125
            K  +      +  V   + R++   +  N +   +      D   Y+C    N      
Sbjct: 136 KKRLSG--ADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVSDIYKYVCTA-KNAAVDEE 191

Query: 126 KQMAFLEVVIPPDISSEE--------TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
             +   E+      +S           S DMM   G    + C     P     + + + 
Sbjct: 192 VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NG 250

Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           K++        ++   +     L        + G Y C   NGV       L L V 
Sbjct: 251 KDVNGNPEDRITRHNRTSGK-RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 84.6 bits (209), Expect = 3e-19
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 46/232 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P        V   +    +  C++                   G           +K +W
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECII------------------EG----NDQ---GVKYSW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            K         H   +  +             +L     +  D G+Y C     P    +
Sbjct: 42  KKDGKSYNWQEHNAALRKDEG-----------SLVFLRPQASDEGHYQCFA-ETPAGVAS 89

Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRS 184
            ++            ++    +    EG   +L C     YP P ITW++  +       
Sbjct: 90  SRVISFRKTYLIASPAKTH--EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD 147

Query: 185 NPPSSQKVFSVESEVLSLTKVTR---SEMGAYQCIAANGVPPTVSKRLMLHV 233
                +++ +     L  T VT+   S++  Y C A N         +   +
Sbjct: 148 VTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSS 189
           L V   P +  +    +++  E     L C  +G     K +W++ D K      N    
Sbjct: 1   LPVDKYPVLKDQ--PAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSY----NWQEH 53

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
                 +   L   +   S+ G YQC A        S+ +    
Sbjct: 54  NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 99.7 bits (248), Expect = 2e-25
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 25/198 (12%)

Query: 39  RVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
            +  SV +  V  G ++      +   V W                   +     ++D +
Sbjct: 6   VIEPSVPELVVKPGATVTLRCVGNG-SVEWDG---------------PPSPHWTLYSDGS 49

Query: 99  TWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAK 157
           +  L+  +   ++ G Y C    +P+       L V  P    +     +++V E   A 
Sbjct: 50  SSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQ-EVVVFEDQDAL 108

Query: 158 LVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
           L C          ++  R   + +                    ++ +    +   YQC 
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPL------MRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162

Query: 217 AANGVPPTVSKRLMLHVH 234
           A  G    +S  + L V 
Sbjct: 163 ALMGGRKVMSISIRLKVQ 180

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 95.8 bits (238), Expect = 8e-24
 Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 47/239 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           + V+     +    + V + + +DA+  C++                  T   +      
Sbjct: 83  LYVKDPARPWNVLAQEVVVFEDQDALLPCLL------------------TDPVL------ 118

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               V+ ++   + ++    +  +                  I   +      Y C    
Sbjct: 119 -EAGVSLVRVRGRPLMRHTNYSFSPWH------------GFTIHRAKFIQSQDYQCSALM 165

Query: 122 NPMTKQMAFLEVVI------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
                    + + +      PP ++      +++   G +A++VC A         + + 
Sbjct: 166 GGRKVMSISIRLKVQKVIPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQH 223

Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +N ++ +          +      L+L +V     G Y C+A+N      S  +   V 
Sbjct: 224 NNTKLAIPQQSDFHNNRYQKVL-TLNLDQVDFQHAGNYSCVASNVQ-GKHSTSMFFRVV 280

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  102 bits (255), Expect = 3e-25
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 37/237 (15%)

Query: 3   PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS 62
           P     P       +  + +G +   TC +                     S        
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTI------------------KDVSSSV----- 242

Query: 63  AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NT 121
                W + +++  L    +   +        N     TL I S R  D G +MC   NT
Sbjct: 243 --YSTWKRENSQTKLQEKYNSWHHG-----DFNYERQATLTISSARVNDSGVFMCYANNT 295

Query: 122 NPMTKQMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKE 179
                    LEVV    I+     +  + V +G +  L+ + + +P P+   W    N+ 
Sbjct: 296 FGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRT 354

Query: 180 IIVRSNPPSSQKVFSVESEV--LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              +       +  S    V  L LT++  +E G Y  + +N      +    ++V+
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD-VNAAIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 93.2 bits (231), Expect = 4e-22
 Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 44/244 (18%)

Query: 21  AQGRDA-IFTCVVNNLGGH-RVSSSVT---------------DTHVNTGGSIVFPTDSSA 63
           A+  D+ +F C  NN  G   V++++                   VN G ++    +  A
Sbjct: 280 ARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 339

Query: 64  ----MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
                   WI    +      E    +    ++ +       L++  ++  + G Y   V
Sbjct: 340 FPKPEHQQWIY-MNRTFTDKWEDYPKSENESNIRYVS----ELHLTRLKGTEGGTYTFLV 394

Query: 120 -NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
            N++        + V   P+I +             +  L C A G+P P I W      
Sbjct: 395 SNSDVNAAIAFNVYVNTKPEILT--------YDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446

Query: 179 EIIVRSNPPSSQKVFSVESE--------VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM 230
           E    ++           S           S+        G  +C A N V    S    
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDV-GKTSAYFN 505

Query: 231 LHVH 234
               
Sbjct: 506 FAFK 509

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 79.3 bits (195), Expect = 3e-17
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 36/240 (15%)

Query: 17  NVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP---TDSS 62
               A+  +   +TC   +   + +   V D           +       +     TD  
Sbjct: 83  ITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142

Query: 63  AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNT 121
               +                +  + R            + I+SV+R   R    C V+ 
Sbjct: 143 VTNYSLKGCQ--------GKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQ 190

Query: 122 NPMTKQMAFLEVVIPPDISS----EETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRRED 176
              +       + + P   +      +    ++ EG    + C  K   +    TW+R +
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-E 249

Query: 177 NKEIIVRSNPPSSQ--KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           N +  ++    S             L+++    ++ G + C A N    + +    L V 
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF-GSANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 11/135 (8%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
                     + G Y C  N + ++    ++ V  P  +   +    +   E     + C
Sbjct: 81  EWITEKAEATNTGKYTC-TNKHGLSNS-IYVFVRDPAKLFLVDR--SLYGKEDNDTLVRC 136

Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MGAYQCIAAN 219
                     + +    K +      P   +        + +  V R+       C    
Sbjct: 137 PLTDPEVTNYSLKGCQGKPL------PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190

Query: 220 GVPPTVSKRLMLHVH 234
                +S++ +L V 
Sbjct: 191 EGKSVLSEKFILKVR 205

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 23/119 (19%)

Query: 108 RREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA 162
                  ++C +          ++         PP I   ++  D++V  G   +L+C  
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS--DLIVRVGDEIRLLCTD 60

Query: 163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            G+    + W  E        +    ++             K   +  G Y C   +G+
Sbjct: 61  PGF----VKWTFEILD---ETNENKQNE---------WITEKAEATNTGKYTCTNKHGL 103

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 96.8 bits (241), Expect = 4e-25
 Identities = 45/231 (19%), Positives = 69/231 (29%), Gaps = 54/231 (23%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
               +     +T++QG+     C V                   G             + 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSV------------------EG----MEEPD----IQ 35

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
           W+K            V   +              L+++SV R D G Y CQV  +     
Sbjct: 36  WVKDG--------AVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV-EDGGETE 86

Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVR 183
             Q  +L V   P  + E    D+ VP     +L C+A G P P  I W R   K   + 
Sbjct: 87  ISQPVWLTVEGVPFFTVEPK--DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK---IG 141

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              PS             L     ++   + C A N      S+   +H+ 
Sbjct: 142 GPAPSP----------SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  101 bits (252), Expect = 4e-25
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 31/243 (12%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVT------------DTHVNTGGSI 55
           E   +   E   + +       C   N  G   +   T               +  G  +
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPL 245

Query: 56  VFPTDSSA----MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
                +        + W   + KA+   +   ++     S            + SV R D
Sbjct: 246 WIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMS---TYSTNRTMIRILFAFVSSVARND 301

Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
            GYY C   +   ++  A + +V    I++  +S D  + +        + K YP  + T
Sbjct: 302 TGYYTCSS-SKHPSQS-ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
           W                 ++        +S     + + G Y   A N      +K   L
Sbjct: 360 WTFSR--------KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD-AQFTKMFTL 410

Query: 232 HVH 234
           ++ 
Sbjct: 411 NIR 413

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 76.3 bits (187), Expect = 3e-16
 Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 37/208 (17%)

Query: 28  FTCVVNNLGGHRVSSSVT---------DTHVNTGGSIVF---PTDSSAMKVAWIKADTKA 75
           +  V  +      +                V+   SI           +   W+   +  
Sbjct: 30  YPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL 89

Query: 76  VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
               H  +                 ++ I  +     G Y+  +  +  T       V I
Sbjct: 90  NCQPHFDLQNRGVV-----------SMVILKMTETQAGEYLLFI-QSEATNYTILFTVSI 137

Query: 136 --PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
                 +                 LVC ++  P P + W   D++    +   P+     
Sbjct: 138 RNTLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA----- 189

Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGV 221
            V+ E   L ++  ++    +C A N +
Sbjct: 190 VVKKEEKVLHELFGTD---IRCCARNEL 214

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 10/118 (8%)

Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK 163
                      Y   V+ +P     A L       +        + V    S  L     
Sbjct: 19  NNDSSVGKSSSYPM-VSESPEDLGCA-LRPQSSGTVYEAAA---VEVDVSASITLQVLVD 73

Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                   W  + +    +   P    +   V S  + + K+T ++ G Y     +  
Sbjct: 74  APGNISCLWVFKHSS---LNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEA 126

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  100 bits (251), Expect = 5e-25
 Identities = 51/246 (20%), Positives = 79/246 (32%), Gaps = 52/246 (21%)

Query: 20  IAQGRDA-IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF----PT 59
             + +DA  + C+  N  G  VS                      V  G  +V     P 
Sbjct: 69  PNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 128

Query: 60  DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
            S  +  AWI  +             +N R            L I  V + D G Y C V
Sbjct: 129 HSGELSYAWIFNEYP--------SYQDNRRFVSQETG----NLYIAKVEKSDVGNYTCVV 176

Query: 120 NTNPMT---KQMAFLEVVIPPDISSEE--------TSGDMMVPEGGSAKLVCKAKGYPTP 168
            TN +T          +++  D    E            +   +G + KL C A G P P
Sbjct: 177 -TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP 235

Query: 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR 228
            I WRR D         P + +      + +L +    + + G+Y+C+A N        +
Sbjct: 236 TILWRRAD-------GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSR-GKNVAK 287

Query: 229 LMLHVH 234
             L  +
Sbjct: 288 GQLTFY 293

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 99.1 bits (247), Expect = 1e-24
 Identities = 53/235 (22%), Positives = 78/235 (33%), Gaps = 52/235 (22%)

Query: 28  FTCVV-NNLGGHRVSSSVTDTHVNTGGSIV---------FPTDSSAMK------------ 65
           +TCVV N +  H+V    T   +   G +          FP    A K            
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231

Query: 66  -----VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV- 119
                + W +AD           I   AR   ++       L I + ++ED G Y C   
Sbjct: 232 NPVPTILWRRAD--------GKPIARKARRHKSNG-----ILEIPNFQQEDAGSYECVAE 278

Query: 120 NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKE 179
           N+         L     P+        D+ V    S    CKA G P P   W +     
Sbjct: 279 NSRGKNVAKGQLTFYAQPNWVQIIN--DIHVAMEESVFWECKANGRPKPTYRWLKNG--- 333

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                +P  ++    +E   L++T V  S+ G YQC+A N     +     L V 
Sbjct: 334 -----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH-GVIFSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 26/187 (13%)

Query: 42  SSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
           S V     +    +        +    + W    T   + +       +  L        
Sbjct: 13  SHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL-------- 64

Query: 99  TWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
              L     + +D G Y C   TN       + A L+     +  +   S  + V  G  
Sbjct: 65  ---LINNPNKTQDAGTYQCIA-TNSFGTIVSREAKLQFAYLENFKTRTRS-TVSVRRGQG 119

Query: 156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
             L+C            W   +        +   +++  S E+  L + KV +S++G Y 
Sbjct: 120 MVLLCGPPPHSGELSYAWIFNE------YPSYQDNRRFVSQETGNLYIAKVEKSDVGNYT 173

Query: 215 CIAANGV 221
           C+  N V
Sbjct: 174 CVVTNTV 180

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 136 PPDISSEETSGDMMVP---EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
            P    E +   +M P   E    KL C+ KG P P I W+  +  ++            
Sbjct: 5   GPVFVQEPS--HVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDV-----DIGMDFR 56

Query: 193 FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
           +SV    L +    +++  G YQCIA N     VS+   L   
Sbjct: 57  YSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 43/128 (33%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P+++  + ++ +A      + C                     G     P  +      W
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKA------------------NG----RPKPT----YRW 329

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
           +K             +    R+ +        TLNI  V   D G Y C    N   +  
Sbjct: 330 LKNG---------DPLLTRDRIQIEQG-----TLNITIVNLSDAGMYQCVA-ENKHGVIF 374

Query: 127 QMAFLEVV 134
             A L V+
Sbjct: 375 SSAELSVI 382

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 98.9 bits (246), Expect = 5e-25
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 47/239 (19%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           + V+     +    + VT+ +G++A+  C++                  T  ++   +  
Sbjct: 83  LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI------------------TDPALK-DS-- 121

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               V+ ++   + VL    +  +                  IR  +  D   Y+C+   
Sbjct: 122 ----VSLMREGGRQVLRKTVYFFSPWR------------GFIIRKAKVLDSNTYVCKTMV 165

Query: 122 NPMTKQMAFLEVVI------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE 175
           N        + + +      PP I  E +   ++   G +A++VC A           + 
Sbjct: 166 NGRESTSTGIWLKVNRVHPEPPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKR 223

Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            + ++ +  N       +      LSL  V   + G Y C+A+N V  T +  +   V 
Sbjct: 224 GDTKLEIPLNSDFQDNYYKKVR-ALSLNAVDFQDAGIYSCVASNDV-GTRTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 9/151 (5%)

Query: 86  NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEET 144
             +       ++   TL  R+   ++ G Y C              L V  P    +   
Sbjct: 37  PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLL- 95

Query: 145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
           + ++ V EG  A L C          ++  RE  ++             F        + 
Sbjct: 96  AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ------VLRKTVYFFSPWRGFIIR 149

Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           K    +   Y C        + S  + L V+
Sbjct: 150 KAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 16/99 (16%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I       +++V  G +  L C + G     + W    +    +    P S      
Sbjct: 4   APVIEPSGP--ELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGS------ 51

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               L+    T    G Y+C          S  + L+V 
Sbjct: 52  ---TLTTRNATFKNTGTYRCTELEDP-MAGSTTIHLYVK 86

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 95.6 bits (238), Expect = 1e-24
 Identities = 46/222 (20%), Positives = 64/222 (28%), Gaps = 49/222 (22%)

Query: 6   GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
              P F   L N+ +    +A   C V    GH                   P       
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVT---GHPK-----------------PI------ 35

Query: 66  VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
           V W +          + +I +  +  +         L I SV  +D   Y  +  TN   
Sbjct: 36  VKWYRQG--------KEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA-TNQGG 86

Query: 125 -TKQMAFLEVVIPPDISS---EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
                A LEV +P  I      E  G +    G    +     G P P ITW++     I
Sbjct: 87  SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLI 145

Query: 181 IVRSNPPSSQKVFSVESEVLSLTK---VTRSEMGAYQCIAAN 219
                  +      V     SL     V R + G Y   A N
Sbjct: 146 D-----NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 38/134 (28%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           VP +   P  L  +  V   +G                           +G     P   
Sbjct: 98  VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF------------------SG----KPDP- 134

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               + W K            +I NN    V    + T  +    V R+D G+Y+     
Sbjct: 135 ---VITWQKGQ---------DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA-K 181

Query: 122 NP--MTKQMAFLEV 133
           N   + ++   L+V
Sbjct: 182 NRFGIDQKTVELDV 195

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 96.1 bits (239), Expect = 2e-24
 Identities = 42/227 (18%), Positives = 65/227 (28%), Gaps = 52/227 (22%)

Query: 9   PDFLYPLE----NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
           P +    +       +       F C      G+                   P      
Sbjct: 16  PYWTNTEKMEKRLHAVPAANTVKFRCPAG---GN-------------------PM----P 49

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            + W+K   +              R+         W+L + SV   D+G Y C V  N  
Sbjct: 50  TMRWLKNGKE---------FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEY 99

Query: 125 --TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK- 178
                   L+VV       I       +     GG  + VCK      P I W +   K 
Sbjct: 100 GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159

Query: 179 ------EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
                 + +          + S  +EVL+L  VT ++ G Y C  +N
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 131 LEVVIPPDISSEET--SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
                 P  ++ E        VP   + K  C A G P P + W + + KE   +     
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF--KQEHRI 66

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                  +   L +  V  S+ G Y C+  N  
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 99

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 28/138 (20%), Positives = 41/138 (29%), Gaps = 30/138 (21%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                   N +   G D  F C        +V S               P       + W
Sbjct: 119 ILQAGLPANASTVVGGDVEFVC--------KVYSDAQ------------PH------IQW 152

Query: 69  IKADTKAVLAIHEHVITNNARL-SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--T 125
           IK   K         +     L     N +N   L + +V   D G Y+C+V +N +   
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV-SNYIGQA 211

Query: 126 KQMAFLEVVIPPDISSEE 143
            Q A+L V+        E
Sbjct: 212 NQSAWLTVLPKQQAPGRE 229

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 95.3 bits (237), Expect = 2e-24
 Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 45/234 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F     + T   G  A F C      G                    P      K+ W
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQAT---GD-------------------PR----PKIVW 40

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--T 125
            K   K         ++N     +  +D +   L I+ +R   D   Y C   +N +   
Sbjct: 41  NKKGKK---------VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA-SNNVGEI 90

Query: 126 KQMAFLEVVIPPDISSEETS-----GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
                L V+    I     +        +V    +A ++C A G P P+ITW + D   +
Sbjct: 91  SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPV 149

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              +N    +++ S     L + +   S+ G Y+C+A N      S    L+V 
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 66.8 bits (163), Expect = 9e-14
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
               PP  +   T  D     GG A  +C+A G P PKI W ++  K   V +      +
Sbjct: 2   TGETPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKK---VSNQRFEVIE 56

Query: 192 VFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
                  VL +  +        Y+C+A+N V   +S    L V 
Sbjct: 57  FDDGSGSVLRIQPLRTPRDEAIYECVASNNV-GEISVSTRLTVL 99

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 22/137 (16%), Positives = 32/137 (23%), Gaps = 39/137 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P      +   + + R A   C                    +G     P      ++ W
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAA------------------SG----NPD----PEITW 142

Query: 69  IKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
            K            V T+N    +      +   L I      D+G Y C   TN     
Sbjct: 143 FKDF--------LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA-TNSAGTR 193

Query: 125 TKQMAFLEVVIPPDISS 141
               A L V        
Sbjct: 194 YSAPANLYVRGTKHHHH 210

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 95.0 bits (236), Expect = 3e-24
 Identities = 45/235 (19%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                   +V + +      TC                    +G    F +      V W
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTY------------------SG----FSSPR----VEW 35

Query: 69  IKADTKAV-LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN---TNPM 124
                    L  +   IT      VT + +    +   SV R+D G Y C V+       
Sbjct: 36  KFVQGSTTALVCYNSQITAPYADRVTFSSS---GITFSSVTRKDNGEYTCMVSEEGGQNY 92

Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNK----E 179
            +    L V++PP   +        V  G  A L C    G P  + +W ++       +
Sbjct: 93  GEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150

Query: 180 IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                   +S      +S  L    VT  + G Y C A NG   T  +    H+ 
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY-GTAMRSEAAHMD 204

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 99.8 bits (248), Expect = 3e-24
 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 39/216 (18%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              L P   + ++ G   +  C         +  +            +   D        
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ---- 280

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
                                 S +       TL I  V R D+G Y C   ++ +   K
Sbjct: 281 ----------------------SGSEMKKFLSTLTIDGVTRSDQGLYTCAA-SSGLMTKK 317

Query: 127 QMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
              F+ V   P ++        +    G   ++  K  GYP P+I W + +   +     
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPL----- 371

Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
             S+  +      VL++ +V+  + G Y  I  N +
Sbjct: 372 -ESNHTIK--AGHVLTIMEVSERDTGNYTVILTNPI 404

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 98.3 bits (244), Expect = 9e-24
 Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 43/238 (18%)

Query: 17  NVTIAQGRDA-IFTCVVNNLGGHRVSSSVT-------------DTHVNTGGSIVFPTDSS 62
            + I     + ++ C   N  G R    ++             D       S+     + 
Sbjct: 516 TLVIQAANVSALYKCEAVNKVG-RGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTAD 574

Query: 63  AM---KVAWIKADTKAVLAIHEHVITNNARLS----------VTHNDANTWTLNIRSVRR 109
                 + W K   + +      + T   +             +++  +   + +++   
Sbjct: 575 RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634

Query: 110 EDRGYYMCQVNTNPMT--KQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVCKAK 163
           +D+G Y+C    +  T  +     ++ +     P I+      +     G S ++ C A 
Sbjct: 635 QDQGDYVCLA-QDRKTKKRHCVVRQLTVLERVAPTITGNLE--NQTTSIGESIEVSCTAS 691

Query: 164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           G P P+I W + DN+ +        S  V    +  L++ +V + + G Y C A + +
Sbjct: 692 GNPPPQIMWFK-DNETL-----VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 85.6 bits (211), Expect = 3e-19
 Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 33/240 (13%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-- 77
             G D   + C          S             I   +D   +       +   V+  
Sbjct: 93  VIGNDTGAYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPC 150

Query: 78  --------------AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
                            +  + +  R+S            I S      G   C+   N 
Sbjct: 151 LGSISNLNVSLCARYPEKRFVPDGNRISWDSKK----GFTIPSYMISYAGMVFCEAKIND 206

Query: 124 MTKQ-MAFLEVVIPPDIS--SEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR------R 174
            + Q + ++ VV+   I       S  + +  G    L C A+      I +       +
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266

Query: 175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +K+++ R     S          L++  VTRS+ G Y C A++G+  T      + VH
Sbjct: 267 HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 83.7 bits (206), Expect = 1e-18
 Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 28/240 (11%)

Query: 1   MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
            VP +  E   + P+++     G     TC V           +             P+ 
Sbjct: 418 YVPPQIGEKSLISPVDSYQY--GTTQTLTCTVY---AIPPPHHIHWYWQLEEECANEPSQ 472

Query: 61  SSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
           + ++   +   + ++V      + I  N          N     +          Y C+ 
Sbjct: 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA 532

Query: 120 NTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
             N +   +++    V   P+I+ +    DM   E  S  L C A       +TW +   
Sbjct: 533 -VNKVGRGERVISFHVTRGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGP 588

Query: 178 KEIIVRSNPPSSQKVFSVESE----------------VLSLTKVTRSEMGAYQCIAANGV 221
           + + +      +    ++++                 ++ L   +  + G Y C+A +  
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 83.3 bits (205), Expect = 1e-18
 Identities = 22/211 (10%), Positives = 49/211 (23%), Gaps = 31/211 (14%)

Query: 27  IFTCVVNNLGGHRVSSSV----------TDTHVNTGGSIVFP-TDSSAMKVAWIKADTKA 75
           ++ CV        + S                +    ++         +   W       
Sbjct: 11  LWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPN----- 65

Query: 76  VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
               ++        ++   +     TL I  V   D G Y C          + ++ V  
Sbjct: 66  ----NQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFY-RETDLASVIYVYVQD 120

Query: 136 P-----PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
                   +S +     +   +  +  + C             R   K  +     P   
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFV-----PDGN 175

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           ++     +  ++     S  G   C A    
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKIND 206

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 43/258 (16%), Positives = 68/258 (26%), Gaps = 50/258 (19%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-- 77
               D  ++TC  ++    + +S    T V           S    +       +  +  
Sbjct: 297 VTRSDQGLYTCAASSGLMTKKNS----TFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352

Query: 78  ---AIHEHVIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQ 127
                    I    N   L   H       L I  V   D G Y   + TNP+       
Sbjct: 353 KYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVIL-TNPISKEKQSH 411

Query: 128 MAFLEVVIPPDISSEETSGDM-MVPEGGSAKLVCKAKGYPTP-KITWRREDNKEII---- 181
           +  L V +PP I  +     +     G +  L C     P P  I W  +  +E      
Sbjct: 412 VVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471

Query: 182 -------------------------VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
                                    +  N      +      V +L     +    Y+C 
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531

Query: 217 AANGVPPTVSKRLMLHVH 234
           A N V     + +  HV 
Sbjct: 532 AVNKV-GRGERVISFHVT 548

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 41/137 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P     LEN T + G     +C                    +G     P      ++ W
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTA------------------SG----NPP----PQIMW 700

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K +           +  ++ + +   +     L IR VR+ED G Y CQ   + +   K
Sbjct: 701 FKDN---------ETLVEDSGIVLKDGNR---NLTIRRVRKEDEGLYTCQA-CSVLGCAK 747

Query: 127 QMAFLEVVIPPDISSEE 143
             AF  +    + ++ E
Sbjct: 748 VEAFFIIEGAQEKTNLE 764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 94.6 bits (235), Expect = 4e-24
 Identities = 40/228 (17%), Positives = 65/228 (28%), Gaps = 38/228 (16%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
               V I +      +C                    +G    F +      V W     
Sbjct: 10  SEPEVRIPENNPVKLSCAY------------------SG----FSSPR----VEWKFDQG 43

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN---TNPMTKQMAF 130
                +  +     +             +  +SV RED G Y C V+    N   +    
Sbjct: 44  DTTRLVCYNNKITASYEDRVTFLPTG--ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNK---EIIVRSNP 186
           L V++PP   +           G  A L C    G P  + TW ++              
Sbjct: 102 LIVLVPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAF 159

Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +S  V +  +  L    ++ S+ G Y C A NG   T      + + 
Sbjct: 160 SNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY-GTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 87.3 bits (216), Expect = 2e-21
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQK 191
              ++   +  ++ +PE    KL C   G+ +P++ W+ +      +         S + 
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK-RLMLHVH 234
             +     ++   VTR + G Y C+ +     +  + ++ L V 
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 94.4 bits (235), Expect = 4e-24
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 49/222 (22%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           + G  P     +++VT   G  A  +C +                   G     P     
Sbjct: 3   MSGEAPGIRKEMKDVTTKLGEAAQLSCQI------------------VG----RPL---- 36

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             + W +   +         +  + +  ++ +   T TL + +  +ED G Y C   TN 
Sbjct: 37  PDIKWYRFGKE---------LIQSRKYKMSSDG-RTHTLTVMTEEQEDEGVYTCIA-TNE 85

Query: 124 M--TKQMAFLEVVIPPDISSEETSG-DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
           +   +  + L +   P                G + +L     G P P +TW     K +
Sbjct: 86  VGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLL 144

Query: 181 IVRSNPPSSQKVFSVESEVLSLT--KVTRSE-MGAYQCIAAN 219
                  S             L    V R    G Y+   +N
Sbjct: 145 -----QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSN 181

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I  E    D+    G +A+L C+  G P P I W R   KE+       S +   S 
Sbjct: 7   APGIRKEMK--DVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKEL-----IQSRKYKMSS 58

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           +    +LT     + + G Y CIA N V   V     L + 
Sbjct: 59  DGRTHTLTVMTEEQEDEGVYTCIATNEV-GEVETSSKLLLQ 98

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 96.2 bits (239), Expect = 9e-24
 Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 54/231 (23%)

Query: 9   PDFLYP----LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
           P +  P     + + +       F C      G+                   P+     
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAA---GNPT-----------------PS----- 154

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            ++W+K   +              R+         W+L + SV   DRG Y C V  N  
Sbjct: 155 -ISWLKNGRE---------FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF 203

Query: 125 --TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--- 176
              +Q   L+V+       I       +     G   +  CK      P I W +     
Sbjct: 204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 263

Query: 177 ------NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                 +    V     +       E EVLSL  VT  + G Y C+A N +
Sbjct: 264 GSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 85.8 bits (212), Expect = 6e-20
 Identities = 37/237 (15%), Positives = 59/237 (24%), Gaps = 66/237 (27%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                  E +    G     +C                           P         W
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPP-------------------------PGGGPMGPTVW 43

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
           +K  T          +  + R+ V         L + +   ED G Y C+          
Sbjct: 44  VKDGTG---------LVPSERVLV-----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCH 89

Query: 129 AFLEVVIPPDISSEETSG------------------------DMMVPEGGSAKLVCKAKG 164
             + V   P    +E                            + VP   + +  C A G
Sbjct: 90  FSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG 149

Query: 165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            PTP I+W + + +E   R            +   L +  V  S+ G Y C+  N  
Sbjct: 150 NPTPSISWLK-NGREF--RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF 203

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.8 bits (147), Expect = 5e-11
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
            P     +    ++   G + +L C    G P     W + D   +        S++V  
Sbjct: 7   VPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGL------VPSERV-L 57

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           V  + L +   +  + GAY C             + +  
Sbjct: 58  VGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 32/135 (23%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                   N T   G D  F C        +V S               P       + W
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHC--------KVYSDAQ------------PH------IQW 256

Query: 69  IK---ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
           +K    +   V       +T          D     L++ +V  ED G Y C    N + 
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA-GNSIG 315

Query: 125 -TKQMAFLEVVIPPD 138
            +   A+L V+   +
Sbjct: 316 FSHHSAWLVVLPAEE 330

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 96.9 bits (241), Expect = 9e-24
 Identities = 42/221 (19%), Positives = 65/221 (29%), Gaps = 54/221 (24%)

Query: 3   PVRGFEPDFLYPL-ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
             R + P        +     G+     C      G+                   P   
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAF---GN-------------------PV-- 236

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
              ++ W K D           +++               L+I++V  ED G Y C+  N
Sbjct: 237 --PQIKWRKLDGS----QTSKWLSSEP------------LLHIQNVDFEDEGTYECEAEN 278

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
                     + +   PD     T  D     G   +  C A G P P + W R+     
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVIT--DTEADIGSDLRWSCVASGKPRPAVRWLRDG---- 332

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                P +SQ    V    L  +K+   + G YQC+A N  
Sbjct: 333 ----QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKH 369

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 93.4 bits (232), Expect = 2e-22
 Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 54/247 (21%)

Query: 20  IAQGRDA-IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF----PT 59
             + +DA  + CV  N  G  VS   +                  +  G  ++F    P 
Sbjct: 68  PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127

Query: 60  DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
              A+   W+  +         + I  + R  V+    N   L I      D G Y C  
Sbjct: 128 HYPALSYRWLLNE-------FPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCFA 177

Query: 120 NTNPM-----TKQMAFLEVVIPPDISSEE-------TSGDMMVPEGGSAKLVCKAKGYPT 167
            T+ +     +    F ++ +  + + +           D     G    L C A G P 
Sbjct: 178 -TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236

Query: 168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227
           P+I WR+ D  +     +              L +  V   + G Y+C A N      + 
Sbjct: 237 PQIKWRKLDGSQTSKWLSSEPL----------LHIQNVDFEDEGTYECEAENIK-GRDTY 285

Query: 228 RLMLHVH 234
           +  + +H
Sbjct: 286 QGRIIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 24/196 (12%)

Query: 42  SSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN 98
           +       +    +        +      W    T+  +            L        
Sbjct: 12  AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL-------- 63

Query: 99  TWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
              +    V+ +D G Y C   TN       + A L      + S+EE    + + EG  
Sbjct: 64  ---VISNPVKAKDAGSYQCVA-TNARGTVVSREASLRFGFLQEFSAEERD-PVKITEGWG 118

Query: 156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
               C     YP     W   +    I    P   ++  S  +  L + K   S++G Y 
Sbjct: 119 VMFTCSPPPHYPALSYRWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDLGNYS 174

Query: 215 CIAANGVPPTVSKRLM 230
           C A + +         
Sbjct: 175 CFATSHIDFITKSVFS 190

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 12/103 (11%)

Query: 136 PPDISSEETSGDMMVPEGGS---AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
            P    +      + PEG +     L C+A+  P     W+  +  E+            
Sbjct: 4   GPVFEEQ--PAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTEL-----KMGPDSR 55

Query: 193 FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
           + + +  L ++   +++  G+YQC+A N     VS+   L   
Sbjct: 56  YRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 43/127 (33%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           PD+L  + +     G D  ++CV                   +G     P  +    V W
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVA------------------SG----KPRPA----VRW 328

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
           ++             + +  R+ V+        L    +  ED G Y C    N      
Sbjct: 329 LRDG---------QPLASQNRIEVSGG-----ELRFSKLVLEDSGMYQCVA-ENKHGTVY 373

Query: 127 QMAFLEV 133
             A L V
Sbjct: 374 ASAELTV 380

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 95.3 bits (237), Expect = 4e-23
 Identities = 47/241 (19%), Positives = 84/241 (34%), Gaps = 54/241 (22%)

Query: 27  IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF---PTDSS-AMKVA 67
            + C   N  G  +S+ +                   V  G  +     P     +  + 
Sbjct: 91  EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT- 125
           W+ +  +         IT + R+S  HN      L   +V  +D +  Y C       T 
Sbjct: 151 WMSSSME--------PITQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNA-RFHFTH 197

Query: 126 --KQMAFLEVVI----------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR 173
             +Q     + +          P  +  + T+   MV  G    L C A G PTP I W 
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257

Query: 174 REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           ++         + PS +  F   ++ L +T V+  + G Y C+A+N +  ++   + + V
Sbjct: 258 KKG-------GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM-GSIRHTISVRV 309

Query: 234 H 234
            
Sbjct: 310 K 310

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 93.4 bits (232), Expect = 3e-22
 Identities = 44/223 (19%), Positives = 68/223 (30%), Gaps = 50/223 (22%)

Query: 3   PVRGFEPDFLYP---LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPT 59
            V    P F+YP     +  + +G D +  C+                   +G     PT
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIA------------------SG----VPT 251

Query: 60  DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
                 +AW K     + +        N              L I +V  ED G Y C  
Sbjct: 252 ----PDIAWYK-KGGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLA 294

Query: 120 -NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
            N     +    + V   P    E    ++++  G   +LVC+A G P P + W    N 
Sbjct: 295 SNKMGSIRHTISVRVKAAPYWLDEPK--NLILAPGEDGRLVCRANGNPKPTVQWMV--NG 350

Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           E +             V  + +       S    YQC  +N  
Sbjct: 351 EPL---QSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH 390

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
              E+  PP I+ +    D +V    +  + C+AKG P P   W R +++   +  +P  
Sbjct: 9   IQNELTQPPTITKQSAK-DHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRV 66

Query: 189 SQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
           S +  S    +   +     E  G YQC A N     +S R+ L V 
Sbjct: 67  SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS 113

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 40/128 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P +L   +N+ +A G D    C                     G     P       V W
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRA------------------NG----NPK----PTVQW 346

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTK 126
           +  + + +          N    V  +     T+  R  +   R  Y C   +N      
Sbjct: 347 MV-NGEPL-----QSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNT-SNEHGYLL 394

Query: 127 QMAFLEVV 134
             AF+ V+
Sbjct: 395 ANAFVSVL 402

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.1 bits (234), Expect = 4e-23
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 48/234 (20%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+   ++     G  A F C                    TG            +V W
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQA------------------TG--------DPKPRVTW 40

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--T 125
            K   K         + +    ++  +++    L I+ +R   D   Y C    N +   
Sbjct: 41  NKKGKK---------VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA-QNSVGEI 90

Query: 126 KQMAFLEVVIPPDISSE-----ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
              A L V+    + S            +V    +A ++C A G P P+ITW + D   +
Sbjct: 91  TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPV 149

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                  S+ ++  + S  L +     ++ G Y+C+A N      S    L+V 
Sbjct: 150 ---DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 91.0 bits (226), Expect = 5e-22
 Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 55/219 (25%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P+     +   + + R A   C  +   G+                   P       + W
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAAS---GNPD-----------------PE------ITW 142

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            K D   V         +N R+    +      L I S    D+G Y C   TN      
Sbjct: 143 FK-DFLPV-----DPSASNGRIKQLRSG----ALQIESSEETDQGKYECVA-TNSAGVRY 191

Query: 126 KQMAFLEV---VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIV 182
              A L V    + P  S         +  GG+  + C A G P P + W +   +++  
Sbjct: 192 SSPANLYVRVQNVAPRFSILPM--SHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTP 248

Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
             + P  +           L      +   Y C+A + +
Sbjct: 249 EDDMPVGR---------NVLELTDVKDSANYTCVAMSSL 278

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP    E    D +   GG A  VC+A G P P++TW ++  K   V S    + +    
Sbjct: 6   PPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFDES 60

Query: 196 ESEVLSLTKVTRSE-MGAYQCIAANGV 221
              VL +  +        Y+C+A N V
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSV 87

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 43/145 (29%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           V V+   P F     +  I  G +   TCV                    G     P   
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVA------------------VG----SPM-- 234

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
               V W++             +T    + V           +     +D   Y C   +
Sbjct: 235 --PYVKWMQGAE---------DLTPEDDMPVG-------RNVLELTDVKDSANYTCVAMS 276

Query: 121 TNPMTKQMAFLEVVIPPDISSEETS 145
           +  + + +A + V   P   ++   
Sbjct: 277 SLGVIEAVAQITVKSLPKAGTKHHH 301

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 91.3 bits (226), Expect = 7e-23
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 45  TDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLA-IHEHVITNNARLSV-THNDANT 99
               V    +++        +    AW K +T A+   I   V  +N   +   ++    
Sbjct: 7   VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI 66

Query: 100 W----TLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
                +L  + +  +D G Y   + + N    Q      V  P         +  V E  
Sbjct: 67  IYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD 126

Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
           S  L C +       I W   +++ +       + +   S  + +L +  + R + G YQ
Sbjct: 127 SVTLTCLSNDIG-ANIQWLF-NSQSL-----QLTERMTLSQNNSILRIDPIKREDAGEYQ 179

Query: 215 CIAANGVPPTVSKRLMLHVH 234
           C  +N V    S  + L + 
Sbjct: 180 CEISNPVSVRRSNSIKLDII 199

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 91.5 bits (227), Expect = 1e-22
 Identities = 41/230 (17%), Positives = 62/230 (26%), Gaps = 53/230 (23%)

Query: 9   PDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
           P +  P     + + +       F C      G+                   PT S   
Sbjct: 12  PYWTRPERMDKKLLAVPAANTVRFRCPAA---GN-------------------PTPS--- 46

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            ++W+K                  R+         W+L + SV   DRG Y C V  N  
Sbjct: 47  -ISWLKNG---------REFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF 95

Query: 125 --TKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK- 178
              +Q   L+V+       I       +     G   +  CK      P I W +     
Sbjct: 96  GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155

Query: 179 -------EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                       +   S           L L  V+  + G Y C A N +
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 35/151 (23%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                   N T   G D  F C        +V S               P       + W
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHC--------KVYSDAQ------------PH------IQW 148

Query: 69  IKADTKAVLAIHEH--VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-- 124
           +K        +           +  ++ +      L + +V   D G Y+C+  TN +  
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRA-TNFIGV 207

Query: 125 TKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
            ++  +L V  P     E         E GS
Sbjct: 208 AEKAFWLSVHGPRAAEEELVE----ADEAGS 234

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 90.2 bits (224), Expect = 2e-22
 Identities = 49/238 (20%), Positives = 77/238 (32%), Gaps = 55/238 (23%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
            P+ +   +N  +  G  A F C      G                    P  S    + 
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAAR---GD-------------------PPPS----IV 39

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM-- 124
           W K + K V           +R +V         L I  VR   D   Y C    N +  
Sbjct: 40  WRK-NGKKV-------SGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA-ENGVGD 90

Query: 125 -TKQMAFLEVV-------IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRED 176
                A L +          P I+        ++  G +  + CKA G PTP I W + +
Sbjct: 91  AVSADATLTIYEGDKTPAGFPVITQGPG--TRVIEVGHTVLMTCKAIGNPTPNIYWIK-N 147

Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             ++        S   +S++   L +      + G Y+C+A N +    SK   L+V 
Sbjct: 148 QTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
              PP+I       +  V  GG A   C A+G P P I WR+ + K++   S   S   V
Sbjct: 3   GAHPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKV---SGTQSRYTV 56

Query: 193 FSVES--EVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
                   +L +  V        Y+C+A NGV   VS    L ++
Sbjct: 57  LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 27/138 (19%), Positives = 38/138 (27%), Gaps = 43/138 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P          I  G   + TC      G+                   PT +    + W
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAI---GN-------------------PTPN----IYW 144

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
           IK            V  +N R S+         L I + R ED+G Y C    N M    
Sbjct: 145 IKNQ--------TKVDMSNPRYSL-----KDGFLQIENSREEDQGKYECVA-ENSMGTEH 190

Query: 126 KQMAFLEVVIPPDISSEE 143
            +   L V +    +   
Sbjct: 191 SKATNLYVKVRRVGTKHH 208

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 93.5 bits (232), Expect = 2e-22
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 46/237 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             +   +    + +G  A+  C++ +     V                         V+W
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-----------------------VSW 140

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT-- 125
              + +            + +  V  +      L+IR V  ED    Y C+   + +T  
Sbjct: 141 HTDEEENYF----PGAEYDGKYLVLPSG----ELHIREVGPEDGYKSYQCRT-KHRLTGE 191

Query: 126 ---KQMAFLEVVIPPDISSEE-----TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN 177
                     V+  P  SS           + +    +  L+C A+G+P P   W +   
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251

Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                ++   + +      S  L +      + G Y C+  N V    S   +L V 
Sbjct: 252 GTTRKQAVVLNDR--VKQVSGTLIIKDAVVEDSGKYLCVVNNSV-GGESVETVLTVT 305

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 92.7 bits (230), Expect = 3e-22
 Identities = 38/221 (17%), Positives = 58/221 (26%), Gaps = 51/221 (23%)

Query: 28  FTCVVNNLGGHRVSSSVT-----------------------DTHVNTGGSIVFPTDSSAM 64
           + C   +        S T                          +    +I     +   
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239

Query: 65  ---KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-N 120
                 W K          E      A +        + TL I+    ED G Y+C V N
Sbjct: 240 PAPSFRWYKFI--------EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291

Query: 121 TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI 180
           +         L V  P     +       V  G  A   C+  G P   ++W +  + + 
Sbjct: 292 SVGGESVETVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKA 347

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           I  S              VL +  V + + G YQC   N  
Sbjct: 348 IGHSE------------SVLRIESVKKEDKGMYQCFVRNDR 376

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P    E T+  +       A++ CKA G P P+I W R D   +               
Sbjct: 3   GPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV-----GDVPGLRQIS 56

Query: 196 ESEVLSLTKVTRSEM------GAYQCIAANGVPPTVSKRLMLHV 233
               L        +         Y C+A N     +S+ + +  
Sbjct: 57  SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 87.8 bits (217), Expect = 1e-21
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 39/210 (18%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P E  T+  G      C  +                               ++  I+A  
Sbjct: 8   PKEVYTVDVGSSVSLECDFDR--------------------------RECTELEGIRASL 41

Query: 74  KAVLAIHEHVITNNARLSVTHNDANT--WTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL 131
           + V          + R ++            +I SV+  D G Y C V          +L
Sbjct: 42  QKV---ENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDY-KYL 97

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
            V +       +T   + VP  G  +L C+A+GYP  +++W+  +       S+  + + 
Sbjct: 98  TVKVKASYMRIDTR-ILEVPGTGEVQLTCQARGYPLAEVSWQ--NVSVPANTSHIRTPEG 154

Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           ++ V S +    ++       + C+  N  
Sbjct: 155 LYQVTSVL----RLKPQPSRNFSCMFWNAH 180

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 87.6 bits (217), Expect = 2e-21
 Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 75/242 (30%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                  E+  +  G+     C      GH                   P     ++  W
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRAT---GH-------------------PF----VQYQW 52

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            K                N  +     + NT  L   +V  +D G+Y+C+V  N      
Sbjct: 53  FK---------------MNKEIP----NGNTSELIFNAVHVKDAGFYVCRV-NNNFTFEF 92

Query: 126 KQMAFLEVVIPPDISSEETSG-------------DMMVPEGGSAKLVCKAKGYPTPKITW 172
            Q + L+V   P+       G                +  G +  L C A G P P   W
Sbjct: 93  SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW 152

Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
            + +   +   +             ++  +  V     G Y C   N      SK++ + 
Sbjct: 153 FK-NELPLTHETK------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199

Query: 233 VH 234
           + 
Sbjct: 200 ID 201

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 69.9 bits (171), Expect = 9e-15
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
                ++P             V  G   KL C+A G+P  +  W + +            
Sbjct: 9   HHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN------------ 56

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +++ +  +  L    V   + G Y C   N      S+   L V 
Sbjct: 57  -KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 87.2 bits (216), Expect = 4e-21
 Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 41/232 (17%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  +    ++ + +   A   C V                   G     P       + W
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKV------------------EG----KPE----PTIEW 43

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---T 125
            K D + V           +      + A  +   ++  + +D G Y C    N +    
Sbjct: 44  FK-DGEPV-----STNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA-KNRVGQAV 96

Query: 126 KQMAFLEV-VIPPDISSEETSGDMMVPEGGSAKLVC-KAKGYPTPKITWRREDNK-EIIV 182
            + A L++ V+  D   E    D  V +G +A L C   KG P P + W ++    + + 
Sbjct: 97  SRHASLQIAVLRDDFRVEPK--DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154

Query: 183 RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +  +S +V  V+   L ++ V   + G Y+CIA N V    S    L V 
Sbjct: 155 AMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 34/143 (23%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           +     DF    ++  +A+G  A+  C                           P     
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGP-------------------------PKGIPE 138

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             + WIK D   +  +       ++R+ +         L I +V   D G Y C    N 
Sbjct: 139 PTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGG----NLLISNVEPIDEGNYKCIA-QNL 192

Query: 124 M---TKQMAFLEVVIPPDISSEE 143
           +       A L V +        
Sbjct: 193 VGTRESSYAKLIVQVKAAAHHHH 215

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 90.4 bits (224), Expect = 4e-21
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 54/242 (22%)

Query: 15  LENVTIAQGRDAIFTCVVNNLGGHRVSSSV-----------------TDTHVNTGGSIVF 57
           + N+T       ++TC  NN       ++V                     V    ++ F
Sbjct: 430 ISNITEKNS--GLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487

Query: 58  PTDSSA--MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYY 115
             +  A      W               +  + RL +++ +    TL + +V R D   Y
Sbjct: 488 TCEPEAQNTTYLWWVNGQS---------LPVSPRLQLSNGNR---TLTLFNVTRNDARAY 535

Query: 116 MCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
           +C +  N +         L+V+  PD        D     G +  L C +   P+P+ +W
Sbjct: 536 VCGI-QNSVSANRSDPVTLDVLYGPDTPIISPP-DSSYLSGANLNLSCHSASNPSPQYSW 593

Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLML 231
           R                  +    ++VL + K+T +  G Y C  +N       S    +
Sbjct: 594 RING---------------IPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

Query: 232 HV 233
            V
Sbjct: 639 TV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 89.2 bits (221), Expect = 1e-20
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 51/228 (22%)

Query: 29  TCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVFPTDSSAM---KVAWIK 70
            C + N      S  V                 T+   G ++     +++    + +W+ 
Sbjct: 358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417

Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM-- 128
                          +      T        L I ++  ++ G Y CQ   N  +     
Sbjct: 418 ---------------DGNIQQHTQ------ELFISNITEKNSGLYTCQA-NNSASGHSRT 455

Query: 129 AFLEVVIPPDI--SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP 186
               + +  ++   S  ++    V +  +    C+ +   T  + W   + + +     P
Sbjct: 456 TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSL-----P 508

Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            S +   S  +  L+L  VTR++  AY C   N V    S  + L V 
Sbjct: 509 VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 87.7 bits (217), Expect = 4e-20
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 52/237 (21%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVT----------------DTHVNTGGSIVF--PTDS 61
               D   +T  V         ++                     V    ++ F    ++
Sbjct: 78  IIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET 137

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
                 W   +           +  + RL +++ +    TL + +V R D   Y C+   
Sbjct: 138 QDATYLWWVNNQS---------LPVSPRLQLSNGNR---TLTLFNVTRNDTASYKCET-Q 184

Query: 122 NPMTKQM---AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
           NP++ +      L V+  PD  +     +     G +  L C A   P  + +W      
Sbjct: 185 NPVSARRSDSVILNVLYGPDAPTISPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNGT- 242

Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVH 234
                         F   ++ L +  +T +  G+Y C A N       +    + V+
Sbjct: 243 --------------FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 87.3 bits (216), Expect = 5e-20
 Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 51/230 (22%)

Query: 27  IFTCVVNNLGGHRVSSSVT---------------DTHVNTGGSIVF---PTDSSAMKVAW 68
            + C   N    R S SV                +T   +G ++        +   + +W
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-- 126
                            N      T        L I ++   + G Y CQ   N  T   
Sbjct: 238 FV---------------NGTFQQSTQ------ELFIPNITVNNSGSYTCQA-HNSDTGLN 275

Query: 127 --QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS 184
              +  + V   P      ++    V +  +  L C+ +   T  + W          +S
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN-------QS 328

Query: 185 NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            P S +   S ++  L+L  VTR+++G Y+C   N +    S  ++L+V 
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL 378

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 82.3 bits (203), Expect = 3e-18
 Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 18/207 (8%)

Query: 39  RVSSSVTDTHVNTGGSIVFP---TDSSAMKVAWIKADTK-AVLAIHEHVITNNARLSVTH 94
           +++   T  +V  G  ++             +W K +       I  +VI          
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 95  NDA-----NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDIS--SEETSGD 147
                      +L I+++ + D G+Y   V  + +  + A  +  + P++   S  ++  
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120

Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
             V +  +    C+ +      + W   +N+ +     P S +   S  +  L+L  VTR
Sbjct: 121 KPVEDKDAVAFTCEPETQDATYLWWV--NNQSL-----PVSPRLQLSNGNRTLTLFNVTR 173

Query: 208 SEMGAYQCIAANGVPPTVSKRLMLHVH 234
           ++  +Y+C   N V    S  ++L+V 
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVL 200

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 87.3 bits (215), Expect = 7e-21
 Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 29/233 (12%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
               V +  G      C        +    ++      G S    T        W     
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPV-ISWLK---GASPDRSTKVFKGNYNWQGEGL 63

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLE- 132
             V +        +     +  +    TL +  V  +D G Y CQV    +  +      
Sbjct: 64  GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 123

Query: 133 -------VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-------- 177
                     P +     T+  + V EG    + C         +TW             
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183

Query: 178 ---------KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                    +  I   +   + +     +  L +     ++ G   C  A G 
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 28/114 (24%)

Query: 139 ISSEETSGDMMVPEGGSAKLVCK---AKGYPTPKITWRREDNKEIIVRSNPPSSQK---- 191
           ++   T  ++ V  GG+ +L C    A     P I+W +  + +   +    +       
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 192 ---------------------VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
                                V ++ +  L LT V   + G Y C  A     T
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT 116

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 16/128 (12%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              +   E V + +G D   TC   +     V+     T      +  +   ++  +   
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF-- 194

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
                     I         R S +        L IR+ +  D G   C++         
Sbjct: 195 ---------GITWFSSEIAGRASFSGAR----NLVIRAAKITDAGRVWCELATGQGELDA 241

Query: 128 MAFLEVVI 135
                ++ 
Sbjct: 242 DRSSTILK 249

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 85.2 bits (211), Expect = 1e-20
 Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 52/242 (21%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
           +    F P  +    ++ +++G  A   C                     G     PT  
Sbjct: 3   LRQEDFPPRIVEHPSDLIVSKGEPATLNCKA------------------EG----RPT-- 38

Query: 62  SAMKVAWIKA----DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
               + W K     +T         ++  +  L           +      R D G Y+C
Sbjct: 39  --PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR-------IVHGRKSRPDEGVYVC 89

Query: 118 QVNTNPM---TKQMAFLEV-VIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITW 172
            V  N +       A LEV ++  D     +  D+MV  G  A + C+  +G+P P I+W
Sbjct: 90  -VARNYLGEAVSHDASLEVAILRDDFRQNPS--DVMVAVGEPAVMECQPPRGHPEPTISW 146

Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
           ++ D   +          +  ++    L +T   +S+ G Y C+  N V    S+   L 
Sbjct: 147 KK-DGSPL------DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199

Query: 233 VH 234
           V 
Sbjct: 200 VL 201

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 42/140 (30%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           V     DF     +V +A G  A+  C                      G    P  +  
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQP------------------PRGH---PEPT-- 143

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             ++W K             + +               L I   R+ D G Y+C   TN 
Sbjct: 144 --ISWKKDG---------SPLDDKDERITIRGG----KLMITYTRKSDAGKYVCVG-TNM 187

Query: 124 MTK---QMAFLEVVIPPDIS 140
           + +   ++A L V+  P   
Sbjct: 188 VGERESEVAELTVLERPSFV 207

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 82.2 bits (203), Expect = 2e-20
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
           +  +   PP I       D++V +G  A L CKA+G PTP I W +   + +    + P 
Sbjct: 2   SLRQEDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPR 58

Query: 189 SQKVFSVESEVLSL----TKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S ++      +  L     + +R + G Y C+A N +   VS    L V 
Sbjct: 59  SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 86.5 bits (214), Expect = 3e-20
 Identities = 33/237 (13%), Positives = 64/237 (27%), Gaps = 61/237 (25%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
            + +  +         D           G ++ S VT                  +KV W
Sbjct: 99  KELMMEVCKKIALSATDLKIQSTAE---GIQLYSFVT-------------YYVEDLKVNW 142

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----- 123
               +          I  + R+           L I      D+G Y+ ++  +      
Sbjct: 143 SHNGSA---------IRYSDRVKTGV-TGEQIWLQINEPTPNDKGKYVMEL-FDGKTGHQ 191

Query: 124 ------------------MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY 165
                               KQ A  E      +        + + EG +  L C   G 
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD--VVTIQEGKALNLTCNVWGD 249

Query: 166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAAN 219
           P P+++W + + K +               E+      ++  V+ ++ G Y  +  N
Sbjct: 250 PPPEVSWLK-NEKAL-----ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 32/227 (14%), Positives = 59/227 (25%), Gaps = 61/227 (26%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+  L    +    + +  C V      + +                        + W
Sbjct: 8   PHFVEYLSW-EVTGECNVLLKCKV--ANIKKET-----------------------HIVW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K          E  I+ + +           TL I    ++D G Y   +  +     K
Sbjct: 42  YK---------DEREISVDEKHDFKDGIC---TLLITEFSKKDAGIYEVIL-KDDRGKDK 88

Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG----------YPTPKITWRRED 176
               L      ++  E      +       K+   A+G              K+ W   +
Sbjct: 89  SRLKLVDEAFKELMMEVC--KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-N 145

Query: 177 NKEIIVRSNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
              I       S +    V  E + L   + T ++ G Y     +G 
Sbjct: 146 GSAI-----RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 62.6 bits (152), Expect = 8e-12
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSS 189
           ++    P            V    +  L CK         I W + D +EI         
Sbjct: 2   IDPFTGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREI-----SVDE 52

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
           +  F      L +T+ ++ + G Y+ I  +  
Sbjct: 53  KHDFKDGICTLLITEFSKKDAGIYEVILKDDR 84

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 82.8 bits (204), Expect = 7e-20
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 9/147 (6%)

Query: 92  VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
           +  +         +    +  G Y C     P     A +++  PP + + ++S    + 
Sbjct: 41  LKEDALPGQKTEFKVDSDDQWGEYSCVFLPEP--MGTANIQLHGPPRVKAVKSS--EHIN 96

Query: 152 EGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--KVTRS 208
           EG +A LVCK++  P      W +  + E     N   S+   S       L    +   
Sbjct: 97  EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156

Query: 209 E-MGAYQCIAANGVPPTVSKRLMLHVH 234
              G Y+C   +    +    + L V 
Sbjct: 157 ADPGQYRCNGTSSK-GSDQAIITLRVR 182

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 85.3 bits (210), Expect = 1e-19
 Identities = 39/232 (16%), Positives = 61/232 (26%), Gaps = 39/232 (16%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
            +  + + +   A   C +         S                  S+ + + W     
Sbjct: 13  TMRQIQVFEDEPARIKCPLFEHFLKFNYS---------------TAHSAGLTLIWYWTRQ 57

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLE 132
              L    +      R+S          L  R     D G Y C + NT   +K    LE
Sbjct: 58  DRDLEEPINFRLPENRISK-----EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLE 112

Query: 133 VVIPPDISSEETSG--DMMVPEGGSAKLVC-----KAKGYPTPKITWRREDNKEIIVRSN 185
           VV      +         +  E G  ++ C            P ITW             
Sbjct: 113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC--------Y 164

Query: 186 PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA---ANGVPPTVSKRLMLHVH 234
              +      E   LS      S  G Y C+     NG    +++ L + V 
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 73.0 bits (178), Expect = 3e-15
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 40/238 (16%)

Query: 21  AQGRDA-IFTCVVNNLGG-HRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA 78
               D   +TC++ N     +V+  +    V    S         +   +I+   + +  
Sbjct: 86  TLLNDTGNYTCMLRNTTYCSKVAFPLE---VVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142

Query: 79  IH-EHVITNNARLSVT------------HNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
            + +    ++ + ++T            +       L+       + G Y C V      
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENG 202

Query: 126 KQ-----------MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA----KGYPTPKI 170
           +            +   +  +PP I S           G    + C            ++
Sbjct: 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV 262

Query: 171 TWRR------EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-YQCIAANGV 221
            W        +   ++ +  +   S+      +++LS+ KVT  ++   Y C A +  
Sbjct: 263 WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 13/106 (12%)

Query: 141 SEETSGDMMVPEGGSAKLVC-----------KAKGYPTPKITWRREDNK-EIIVRSNPPS 188
             +T   + V E   A++ C                    + W       ++    N   
Sbjct: 10  GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +   S E +VL       ++ G Y C+  N           L V 
Sbjct: 70  PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT-YCSKVAFPLEVV 114

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 82.6 bits (204), Expect = 2e-19
 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%)

Query: 36  GGHRVSSSVTDTHVNTGGSIVFPTDSSA----MKVAWIKADTKAVLAIHEHVITNNARLS 91
           G     S+      +T   I   +  +     +KV W           +   I  + R+ 
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAIRYSDRVK 51

Query: 92  VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----------------------TKQM 128
                     L I      D+G Y+ ++  +                          KQ 
Sbjct: 52  TGVTG-EQIWLQINEPTPNDKGKYVMEL-FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQA 109

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
           A  E      +        + + EG +  L C   G P P+++W + + K +       +
Sbjct: 110 AIAEKNRARVL--GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKAL-----AQT 161

Query: 189 SQKVFSVESE---VLSLTKVTRSEMGAYQCIAAN 219
                  E+      ++  V+ ++ G Y  +  N
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 18/88 (20%)

Query: 146 GDMMVPEGGSAKLVCKAKGY----------PTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           G  +       K+   A+G              K+ W   +   I       S +    V
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI-----RYSDRVKTGV 54

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGV 221
             E + L   + T ++ G Y     +G 
Sbjct: 55  TGEQIWLQINEPTPNDKGKYVMELFDGK 82

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 83.2 bits (205), Expect = 2e-19
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 23/138 (16%)

Query: 102 LNIRSVRREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSA 156
           L +++   ++   + C              Q   L V+  P +   +  G+   PE    
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203

Query: 157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI 216
             +C+A G P P++   ++    +                  +     VTR   G Y C 
Sbjct: 204 TPMCQAWGNPLPELKCLKDGTFPL-----------------PIGESVTVTRDLEGTYLCR 246

Query: 217 AANGVPPTVSKRLMLHVH 234
           A +     V++ + ++V 
Sbjct: 247 ARSTQ-GEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 22/147 (14%), Positives = 37/147 (25%), Gaps = 23/147 (15%)

Query: 93  THNDANTWTLNIR-SVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
             ND+ +   ++  +   E      C V       Q     V I    +         V 
Sbjct: 53  YGNDSFSAKASVSVTAEDEGTQRLTCAV-ILGNQSQETLQTVTIYSFPAPNVILTKPEVS 111

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
           EG    + C+A       +                        +      L K T  + G
Sbjct: 112 EGTEVTVKCEAHPRAKVTLNG-----------------VPAQPLGPRAQLLLKATPEDNG 154

Query: 212 A-YQCIAANGVPPTV---SKRLMLHVH 234
             + C A   V   +   ++   L V 
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVL 181

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 82.5 bits (203), Expect = 7e-19
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 11/142 (7%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPE 152
              +                G Y C  +    +    ++ V  P  +        +   E
Sbjct: 50  EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS--IYVFVRDPAKLF--LVGLPLFGKE 105

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MG 211
              A + C        + +    D K +      P+           +++  V R+    
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSL------PTDLTFVPNPKAGITIKNVKRAYHRL 159

Query: 212 AYQCIAANGVPPTVSKRLMLHV 233
             +C A        S +  L V
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKV 181

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 80.9 bits (199), Expect = 2e-18
 Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 38/242 (15%)

Query: 17  NVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP---TDSS 62
               A+      +TC  +N     +   V D                   +     TD  
Sbjct: 60  IQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119

Query: 63  AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN 122
             + + I+ D K+        +  +        +           R   R    C    +
Sbjct: 120 VSQYSLIECDGKS--------LPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQRD 168

Query: 123 --PMTKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRRE 175
              +      L+V       P +S  ETS   ++ +G +  +VC  K   T     W + 
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETS--HLLKKGDTFTVVCTIKDVSTSVNSMWLKM 226

Query: 176 DNKEI---IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH 232
           + +      V+ N            E L+++     + G + C A N    + +    L 
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF-GSANVTTTLK 285

Query: 233 VH 234
           V 
Sbjct: 286 VV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP I   ++  +++V  G +  L C         + W  +     +V +           
Sbjct: 12  PPSIHPAQS--ELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---------- 55

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVS 226
                   K   +  G Y C  +NG+  ++ 
Sbjct: 56  -KNEWIQEKAEATRTGTYTCSNSNGLTSSIY 85

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 80.1 bits (197), Expect = 2e-18
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 43/221 (19%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P   +    G DA   C +                            +  M++ W+ +  
Sbjct: 10  PSGPILAMVGEDADLPCHLFP-----------------------TMSAETMELKWVSSSL 46

Query: 74  KAVLAIHEH----------VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
           + V+ ++                   +      A    L I +V   D G Y+C      
Sbjct: 47  RQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGD 106

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIV 182
             ++ A +E+ +    S       +   + G   L C++ G YP P+I W     + I  
Sbjct: 107 FYEK-ALVELKVAALGSDLHVD--VKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT 163

Query: 183 RSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
              P       +++V + V+    +  S      C   + +
Sbjct: 164 VEAPVVADGVGLYAVAASVI----MRGSSGEGVSCTIRSSL 200

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 79.7 bits (196), Expect = 5e-18
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 21  AQGRDA-IFTCVVNN-LGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA 78
             G D   + C  N+  G            V        P D+  + +  +   T+    
Sbjct: 58  LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIF-LTEITEIT-- 114

Query: 79  IHEHVITNNARLSVTHNDAN-----TWTLNIRSVRREDRGYYMCQ--VNTNPMTKQMAFL 131
           I   V      +++     +      +          +   Y+C+  +    +     ++
Sbjct: 115 IPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK-EIIVRSNPPSSQ 190
             +    I+    +   +V +G +  L+C   G       W     +   +V        
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVH 234
            +      +L +      + G Y C     V      K + + V 
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 70.9 bits (173), Expect = 9e-15
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 32/200 (16%)

Query: 40  VSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT 99
           V+    +  +N   + V  T S +  V W +   +               ++   +   +
Sbjct: 3   VTPPGPELVLNVSSTFVL-TCSGSAPVVWERMSQE-----------PPQEMAKAQDGTFS 50

Query: 100 WTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP----PDISSEETSGDMMVPEG 153
             L + ++   D G Y C  N +    T +   L + +P      + ++     + + E 
Sbjct: 51  SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEI 110

Query: 154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAY 213
               + C+    P   +T   +     +    P   Q+ F               E  +Y
Sbjct: 111 TEITIPCRVTD-PQLVVTLHEKKGDVAL--PVPYDHQRGF-----------SGIFEDRSY 156

Query: 214 QCIAANGVPPTVSKRLMLHV 233
            C    G     S    ++ 
Sbjct: 157 ICKTTIGDREVDSDAYYVYR 176

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 15/102 (14%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
           +V+ P         ++++    +  L C         + W R  ++E             
Sbjct: 1   LVVTPPGP------ELVLNVSSTFVLTCSGSA----PVVWER-MSQEPPQEMAKAQDGTF 49

Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            SV    L+LT +T  + G Y C   +       +R  L++ 
Sbjct: 50  SSV----LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 80.1 bits (197), Expect = 7e-18
 Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 45/235 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                  +     +G      C             V      +         S  + + W
Sbjct: 19  RFRGRHYKREFRLEGEPVALRC-----------PQVPYWLWASV--------SPRINLTW 59

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
            K D+          +       +   D     L +    +ED G Y+C   N +   K 
Sbjct: 60  HKNDSA-------RTVPGEEETRMWAQDG---ALWLLPALQEDSGTYVCTTRNASYCDKM 109

Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC-----KAKGYPTPKITWRREDNKEIIV 182
              L V    D      S   ++    S  LVC       +     KI W + D+  +  
Sbjct: 110 SIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLL-- 166

Query: 183 RSNPPSSQKVFSVE-SEVLSLTKVTRSEMGAYQCIAAN---GVPPTVSKRLMLHV 233
                 ++K  SV  +  L +  V   + G Y+C+      G    +++ + L +
Sbjct: 167 ---DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 41/248 (16%), Positives = 73/248 (29%), Gaps = 60/248 (24%)

Query: 21  AQGRDA-IFTCVVNNLGG-HRVSSSVT--------------DTHVNTGGSIV-------- 56
           A   D+  + C   N     ++S  +                  +    S V        
Sbjct: 88  ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147

Query: 57  FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
           F  D + +K+ W K D+  +   +E  ++             T  L +  V  ED GYY 
Sbjct: 148 FTRDKTDVKIQWYK-DSLLLDKDNEKFLSVR----------GTTHLLVHDVALEDAGYYR 196

Query: 117 CQVNTNPMTKQ-----MAFLEVV-----IPPDISSEETSGDMMVPEGGSAKLVCKA---K 163
           C +      +Q        L +        P I S      +    G    + CK     
Sbjct: 197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK--TISASLGSRLTIPCKVFLGT 254

Query: 164 GYPTPKITWRREDNKE---------IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-Y 213
           G P   + W   ++           +        S+   +     L    VTR ++   +
Sbjct: 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDF 314

Query: 214 QCIAANGV 221
           +C+  N +
Sbjct: 315 KCVVHNTL 322

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 147 DMMVPEGGSAKLVCK-------AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV 199
                EG    L C        A   P   +TW + D+     R+ P   +     +   
Sbjct: 27  REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSA----RTVPGEEETRMWAQDGA 82

Query: 200 LSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           L L    + + G Y C   N         + L V 
Sbjct: 83  LWLLPALQEDSGTYVCTTRNAS-YCDKMSIELRVF 116

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 28/134 (20%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  + PL+ ++ + G      C V    G                     T      + W
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTG-----------------TPLTT------MLW 263

Query: 69  IKADTKAVLAIHEHV-ITNNARLSVTHNDANTW--TLNIRSVRREDRGY-YMCQVNTNPM 124
             A+   + + +    +T   R   + N+ N     L    V RED    + C V  N +
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV-HNTL 322

Query: 125 TKQMAFLEVVIPPD 138
           + Q     V     
Sbjct: 323 SFQTLRTTVKEHHH 336

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
                     D G Y CQ     ++     L V+    +     +  +   EG +  L C
Sbjct: 52  PSYRFKANNNDSGEYTCQTGQTSLSDP-VHLTVLFEWLVLQ---TPHLEFQEGETIMLRC 107

Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            +    P  K+T+ + + K              FS      S+ +   S  G Y C    
Sbjct: 108 HSWKDKPLVKVTFFQ-NGKSQK-----------FSHLDPTFSIPQANHSHSGDYHCTGNI 155

Query: 220 GVPPTVSKRLMLHV 233
           G     SK + + V
Sbjct: 156 GYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 18/100 (18%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS 194
           PP    +     + V +  S  L C+    P    I W   +   I              
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLI-------------P 47

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             ++     K   ++ G Y C        ++S  + L V 
Sbjct: 48  THTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVL 84

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 78.7 bits (193), Expect = 2e-17
 Identities = 34/226 (15%), Positives = 57/226 (25%), Gaps = 45/226 (19%)

Query: 26  AIFTCVVNNLGGHRVSSSVT--------------DTHVNTGGSIVF----PTDSSAMKVA 67
             + C V    G  V   V               +   +    I              + 
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           W K +        + +I +  + S      +   L I +   ED G Y C V+ + +  +
Sbjct: 163 WYKNN--------QELIIDGTKYSQ-----SGQNLIIHNPELEDSGRYDCYVHYDDVRIK 209

Query: 128 MAF-LEVVIPPDISSEE-------TSGDMMVPEGGSAKLVCKAKGYPTPK----ITWRRE 175
               +       +   +           + V  G  A + C A           I W   
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269

Query: 176 DNKEIIVRSNPPSSQKV-FSVESEVLSLTKVTRSEMGA-YQCIAAN 219
               I +     S       +    L    VT   +G  Y C   N
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN 315

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 72.2 bits (176), Expect = 4e-15
 Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 11/124 (8%)

Query: 101 TLNIRSVRREDRG-YYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158
            L I +    D    Y+C V   N    Q      +  P     ET  ++   +     L
Sbjct: 90  DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETY-ELGTHDKYGIDL 148

Query: 159 VCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA 217
            C          ITW + +N+E+            +S   + L +      + G Y C  
Sbjct: 149 YCGILYAKHYNNITWYK-NNQEL------IIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201

Query: 218 ANGV 221
               
Sbjct: 202 HYDD 205

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 2/105 (1%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
               + P      T  + M   G      C           +  +DN     +       
Sbjct: 23  DSKWLNPSCMFGGT-MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81

Query: 191 KVFSVESEVLSLTKVTRSEMGA-YQCIAANGVPPTVSKRLMLHVH 234
               V++  L +   T ++    Y C         V   +  H+ 
Sbjct: 82  LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 76.5 bits (188), Expect = 3e-17
 Identities = 32/233 (13%), Positives = 61/233 (26%), Gaps = 61/233 (26%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F      V I +     F      L                         S   KV +
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKL-------------------------SGNAKVNY 37

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           I          +E  I    +  +  +       + +  ++ ED G Y  Q+  +     
Sbjct: 38  IF---------NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDGKATN 87

Query: 128 MAFLEVVIPPDISSEETSG------------------DMMVPEGGSAKLVCKAKGYPTP- 168
            + + +V       ++ +                      V    +  L CK        
Sbjct: 88  HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 147

Query: 169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            I W + D +EI         +  F      L +T+ ++ + G Y+ I  +  
Sbjct: 148 HIVWYK-DEREI-----SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 77.2 bits (189), Expect = 4e-17
 Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 63/259 (24%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P        + +  G   +  CVV       V                        +V W
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHV-----------------------DRVDW 42

Query: 69  IKADTKAVLAIHEHVITNNARLS----------VTHNDANTWTLNIRSVRREDRGYYMCQ 118
           + +  K   + +     +N  +           V     N  +L ++ V++ D G Y C+
Sbjct: 43  LFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCE 102

Query: 119 VNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP---KITWRR 174
           +     +  M   +E+ + P+        D+ V  G + ++ C  +        K+ W  
Sbjct: 103 IRLKNESMVMKKPVELWVLPEEPR-----DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157

Query: 175 ED--------------NKEIIVRSNPPSSQKVFSVESEV------LSLTKVTRSEMGAYQ 214
                           N       +    +    +  ++      + L  V  S+ G Y 
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217

Query: 215 CIAANGVPPTVSKRLMLHV 233
           C    G      K ++LHV
Sbjct: 218 CSIYVG-KLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 35/175 (20%)

Query: 15  LENVTIAQGRDA-IFTCVVNNLGGHRVSSSVTD----------THVNTGGSIVFP----- 58
           L++V  A   D  I+TC +       V     +            V  G +         
Sbjct: 88  LQDVQKA---DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQS 144

Query: 59  -TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA--------------NTWTLN 103
             +    KV W+ +              +N R     +                N  ++ 
Sbjct: 145 TEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204

Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL 158
           +++V+  D+G Y C +      +    + + +  D      S      +G    L
Sbjct: 205 LQTVKESDQGIYTCSI-YVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGIL 258

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 77.2 bits (189), Expect = 1e-16
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 101 TLNIRSVRREDRGYYMCQV-----NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGS 155
            L +++   ++   + C              Q   L V+  P +   +  G+   PE   
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387

Query: 156 AKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQC 215
              +C+A G P P++   ++    +                  +     VTR   G Y C
Sbjct: 388 QTPMCQAWGNPLPELKCLKDGTFPL-----------------PIGESVTVTRDLEGTYLC 430

Query: 216 IAANGVPPTVSKRLMLHVH 234
            A +     V++ + ++V 
Sbjct: 431 RARSTQ-GEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.1 bits (129), Expect = 9e-09
 Identities = 35/229 (15%), Positives = 60/229 (26%), Gaps = 35/229 (15%)

Query: 25  DAIFTCVV-NNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA----- 78
            A F+C    +L    +      +      + V P     +    +              
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

Query: 79  -------IHEHVITNNARLS--VTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQM 128
                     H+   + RL+  VT+ + +       SV  ED G              Q 
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE 273

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
               V I    +         V EG    + C+A  +P  K+T      + +  R+    
Sbjct: 274 TLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGPRAQ--- 328

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKR---LMLHVH 234
                      L L         ++ C A   V   +  +     L V 
Sbjct: 329 -----------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 366

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 22/242 (9%), Positives = 52/242 (21%), Gaps = 46/242 (19%)

Query: 25  DAIFTCVVNNLGG--------------HRVSSSVTDTHVNTGGSIVFPTDSSA------M 64
           D+   C  N   G               RV  +   +    G ++              +
Sbjct: 60  DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-- 122
            V  ++          E  +            A   T  +   R      + C+   +  
Sbjct: 120 TVVLLR---------GEKELKRE---PAVGEPAEV-TTTVLVRRDHHGANFSCRTELDLR 166

Query: 123 ------PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRRE 175
                        +         +  +     ++       +VC   G +P  +      
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226

Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235
              + +   NP  +    S  ++                C    G   +      + ++ 
Sbjct: 227 LGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG-NQSQETLQTVTIYS 282

Query: 236 TY 237
             
Sbjct: 283 FP 284

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 16/136 (11%), Positives = 28/136 (20%), Gaps = 10/136 (7%)

Query: 91  SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMV 150
                              ++    MC  N             V       E        
Sbjct: 39  KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQ 98

Query: 151 PEGGSAKLVCKAKG---YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR 207
           P G +  L C+ +G        +   R   KE+          +V        ++     
Sbjct: 99  PVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPAVGEPAEV------TTTVLVRRD 151

Query: 208 SEMGAYQCIAANGVPP 223
                + C     + P
Sbjct: 152 HHGANFSCRTELDLRP 167

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 12/88 (13%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
            +++P GGS  + C         +       K+ ++                        
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-----------NRKVYELSN 56

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             E     C +        + +  L V+
Sbjct: 57  VQEDSQPMCYSNCPD-GQSTAKTFLTVY 83

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 35/214 (16%)

Query: 17  NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
           +VT      A  +C  N                      V   + +  ++ W K + K V
Sbjct: 3   HVTKEVKEVATLSCGHN----------------------VSVEELAQTRIYWQK-EKKMV 39

Query: 77  LAIHEHVITNNARLS--VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV- 133
           L +    +            +  N  ++ I ++R  D G Y C V               
Sbjct: 40  LTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAE 99

Query: 134 --VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPP--S 188
             +         +  D  +P     +++C   G +P P ++W     +   + +      
Sbjct: 100 VTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDP 159

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP 222
             ++++V S++        +   ++ C+   G  
Sbjct: 160 ETELYAVSSKL----DFNMTTNHSFMCLIKYGHL 189

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 73.8 bits (181), Expect = 2e-16
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 17/134 (12%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           +  I +    D G Y CQ            LEV I   +         +  E     L C
Sbjct: 55  SYFIDAATVNDSGEYRCQT-NLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRC 110

Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            +       K+T+ + + K+             +   +    + K T  + G+Y C    
Sbjct: 111 HSWKNTALHKVTYLQ-NGKDR-----------KYFHHNSDFHIPKATLKDSGSYFCRGLV 158

Query: 220 GVPPTVSKRLMLHV 233
           G     S+ + + +
Sbjct: 159 GSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
           V E  S  L C+    P    T    +   I             S ++    +   T ++
Sbjct: 19  VLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------------SSQASSYFIDAATVND 65

Query: 210 MGAYQCIAANGVPPTVSKRLMLHVH 234
            G Y+C        T+S  + L VH
Sbjct: 66  SGEYRCQTNLS---TLSDPVQLEVH 87

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 73.8 bits (181), Expect = 2e-16
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 29/187 (15%)

Query: 42  SSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEH---VITNNARLSVTH 94
            SV + +  TG ++        +     + W+    + +L    +    +  +       
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63

Query: 95  NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
            D     L I +V +EDRG Y  ++      +    +EV           S  M+  E  
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMV-------SKPMIYWECS 116

Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
           +A L C+       ++   +                          +++    +    ++
Sbjct: 117 NATLTCEVLEGTDVELKLYQGKE---------------HLRSLRQKTMSYQWTNLRAPFK 161

Query: 215 CIAANGV 221
           C A N V
Sbjct: 162 CKAVNRV 168

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 75.5 bits (185), Expect = 2e-16
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 29/182 (15%)

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNP 123
            + W K D+       +  ++      +  +      L     + ED G+Y C V N++ 
Sbjct: 37  TITWYKDDS-------KTPVSTEQASRIHQHKE---KLWFVPAKVEDSGHYYCVVRNSSY 86

Query: 124 MTKQMAFLEVV--IPPDISSEETSGDMMVPEGGSAKLVC------KAKGYPTPKITWRRE 175
             +     + V   P    + +      +P  G   LVC      K +    PK+ W ++
Sbjct: 87  CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD 146

Query: 176 DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN---GVPPTVSKRLMLH 232
                            FS   + L +  V     G Y C A+    G    +++ +   
Sbjct: 147 CKP-------LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199

Query: 233 VH 234
             
Sbjct: 200 TL 201

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 72.4 bits (177), Expect = 3e-15
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 25/164 (15%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV----------IPPDISSEE 143
           H       L + +V  + RG Y C  +   + KQ     V+            P I S  
Sbjct: 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP- 214

Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----- 198
            +  M V  G   +L+C   G  +    W+   N  +I   +P   +  +SVE+      
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQLSDIAYWKW--NGSVIDEDDPVLGEDYYSVENPANKRR 272

Query: 199 -----VLSLTKVTRSEM-GAYQCIAANGVPPTVSKRLMLHVHCT 236
                VL+++++        + C A N      +  + L    T
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTH-GIDAAYIQLIYPVT 315

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 6/100 (6%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS 194
                  E    ++          C          ITW ++D+K  +             
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV----STEQASRIH 58

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              E L        + G Y C+  N     +  ++     
Sbjct: 59  QHKEKLWFVPAKVEDSGHYYCVVRNSS-YCLRIKISAKFV 97

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 73.0 bits (179), Expect = 3e-16
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           +LNI + + ED G Y CQ      ++ +          + +        V EG    L C
Sbjct: 52  SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEV----VMEGQPLFLRC 107

Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
                +   K+ + + D + +            +  E+  +S+T  T  + G Y C    
Sbjct: 108 HGWRNWDVYKVIYYK-DGEALK-----------YWYENHNISITNATVEDSGTYYCTGKV 155

Query: 220 GVPPTVSKRLMLHVH 234
                 S+ L + V 
Sbjct: 156 WQLDYESEPLNITVI 170

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 70.6 bits (173), Expect = 3e-16
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 11/105 (10%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSS 189
           L     P + + E      V  G     +C AK   P   + W R  N ++  R+   + 
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                    +L++  V  S+ G Y C  +N           LHV 
Sbjct: 63  ---------ILTIRNVQPSDAGTYVCTGSNMF-AMDQGTATLHVQ 97

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 75.8 bits (185), Expect = 5e-16
 Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 19/234 (8%)

Query: 22  QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-----MKVAWIKADTKAV 76
             R   F   +    G  + +      V+ G ++              K  + +     V
Sbjct: 97  NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156

Query: 77  LAIHEHVIT-----NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF 130
           L I              RL +       +++ I  +R  D G Y+CQ  + +   K+ A 
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216

Query: 131 LEVVIPPDISSEETSGDMMVPE-------GGSAKLVCKAKGYPTPKITWRREDNKEIIVR 183
           L+V+ P      E     +             AK +C+        +       K     
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNT-LGKRAPAF 275

Query: 184 SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237
                        S  + +T + + + G Y C A +         +        
Sbjct: 276 EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVN 329

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 74.6 bits (182), Expect = 1e-15
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFP----TDSSAMKVAWIKA 71
            +    Q    I    +       +  S T      G S+          S     W   
Sbjct: 310 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369

Query: 72  DTKAVLAIHEHVITN-------NARLSVTHNDAN-TWTLNIRSVRREDRGYYMCQVNTNP 123
           +          V +          RLS+     N T+T+ +  +   D G+Y C  N + 
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429

Query: 124 MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC----KAKGYPTPKITWRREDNKE 179
           + +    ++++          +  +    G + K+ C    K   Y      W      +
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGN--VTAVLGETLKVPCHFPCKFSSYEKYWCKWNN-TGCQ 486

Query: 180 IIVRSNPPSSQKVFSVESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +   +   S+   + +       L+L  VTR++ G Y C    G     +  + + V 
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 72.3 bits (176), Expect = 6e-15
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 39/261 (14%)

Query: 17  NVTIAQGR--DA-IFTCVVNNLGGHRVSS--------SVTDTHVNTGGSIVFPTDSSAMK 65
           +V I Q R  DA  + C   +       +             + +  GS+ F        
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245

Query: 66  VAWIKADTKAVLAIHEHVIT---------NNARLSVTHNDAN-TWTLNIRSVRREDRGYY 115
               K   +     +  V+             R+ +   D + ++++ I  +R+ED G Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305

Query: 116 MCQVNTNPMTKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW 172
           +C  +++   ++ + ++     +  + +   +   +    G S  ++C      +  I +
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365

Query: 173 ------RREDNKEIIVRSNPPSSQKV---FSVESE------VLSLTKVTRSEMGAYQCIA 217
                  +     ++V S      +     S+  E       + L ++T  + G Y C+ 
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425

Query: 218 ANGVPPTVSKRLMLHVHCTYL 238
                   +  + +      L
Sbjct: 426 NGDTLWRTTVEIKIIEGEPNL 446

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 24/201 (11%), Positives = 62/201 (30%), Gaps = 26/201 (12%)

Query: 46  DTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAI-----HEHVITNNARLSVTH 94
           + +   G S+         + +   +  W +   +                   R ++T+
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 95  NDAN-TWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEG 153
              N T+ +NI  + ++D G Y C +           + + +         +    V  G
Sbjct: 69  FPENGTFVVNIAQLSQDDSGRYKCGL-GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLG 127

Query: 154 GSAKLVC--KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----------VESEVL 200
            +  + C  K +     K  +++     ++V  +       ++                +
Sbjct: 128 RTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 187

Query: 201 SLTKVTRSEMGAYQCIAANGV 221
            + ++  S+ G Y C A +  
Sbjct: 188 VINQLRLSDAGQYLCQAGDDS 208

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 59.2 bits (142), Expect = 2e-10
 Identities = 28/178 (15%), Positives = 52/178 (29%), Gaps = 26/178 (14%)

Query: 18  VTI--AQGRDA-IFTCVVNNLGGHRVSSSV------------TDTHVNTGGSI----VFP 58
           V +     RDA  + C+ N     R +  +             +     G ++     FP
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467

Query: 59  TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ 118
              S+ +  W K +     A+       +        ++   +L +  V R D G+Y C 
Sbjct: 468 CKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCG 527

Query: 119 VNTNPMTKQM--AFLEVVIPPDISSEETSGDMMVPEGG-----SAKLVCKAKGYPTPK 169
           V       +    ++ V       S + S              S     + K    P+
Sbjct: 528 VKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR 585

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 73.1 bits (179), Expect = 2e-15
 Identities = 31/233 (13%), Positives = 60/233 (25%), Gaps = 61/233 (26%)

Query: 6   GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
           G +P     + NV         F C                                  +
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDKMT---------------------------PKSE 33

Query: 66  VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
            +W K               ++ RL V     N   +  + +  +D G Y C V T+   
Sbjct: 34  FSWSKDYVS---------TEDSPRLEVESKG-NKTKMTFKDLGMDDLGIYSCDV-TDTDG 82

Query: 126 KQMAFLEVVIPPDISSEETSG------------DMMVPEGGSAKLVCKA-KGYPTPKITW 172
              ++L            +               + + E G  +   +A K     K+ +
Sbjct: 83  IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142

Query: 173 RREDNKEIIVRSNPPSSQKVFSVESEV----LSLTKVTRSEMGAYQCIAANGV 221
              + KEI         +    ++       + + K+   + G Y     +G 
Sbjct: 143 IF-NEKEI-----FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 35/248 (14%), Positives = 66/248 (26%), Gaps = 64/248 (25%)

Query: 21  AQGRDA-IFTCVVNNLGGHRVSSSVT-------------------------DTHVNTGGS 54
               D  I++C V +  G   S  +                             +   G 
Sbjct: 65  LGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ 124

Query: 55  IVF----PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH-NDANTWTLNIRSVRR 109
           + F       S   KV +I  + +         I    +  +    +     + +  ++ 
Sbjct: 125 VRFWMQAEKLSGNAKVNYIFNEKE---------IFEGPKYKMHIDRNTGIIEMFMEKLQD 175

Query: 110 EDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSG----------------DMMVPE 152
           ED G Y  Q+ +          L   +   +  E                       V  
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG 235

Query: 153 GGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
             +  L CK         I W + D +EI         +  F      L +T+ ++ + G
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYK-DEREI-----SVDEKHDFKDGICTLLITEFSKKDAG 289

Query: 212 AYQCIAAN 219
            Y+ I  +
Sbjct: 290 IYEVILKD 297

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           I P    +E   ++      S    C     P  + +W + D            S +   
Sbjct: 2   IDPFT--KEVVVNVDDDGVISLNFECDK-MTPKSEFSWSK-DYVST------EDSPR-LE 50

Query: 195 VESE----VLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
           VES+     ++   +   ++G Y C   +      S  +
Sbjct: 51  VESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLI 89

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 40  VSSSVTDTHVNTGGSIVFP----TDSSAMKVAWIKADTKAVLAI-----HEHVITNNARL 90
           +S +    +   G S+  P           + W+  +T     +        +   N + 
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60

Query: 91  SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMM 149
               N   +++L + +++ ED G Y  Q++T    K  ++ L ++             + 
Sbjct: 61  GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLF 120

Query: 150 VPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
                   L C  +         W    N                      L+++   R 
Sbjct: 121 QNMTCELHLTCSVEDADDNVSFRWEALGN---------------TLSSQPNLTVSWDPRI 165

Query: 209 EM-GAYQCIAANGV 221
                Y CIA N V
Sbjct: 166 SSEQDYTCIAENAV 179

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 71.4 bits (174), Expect = 3e-15
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 38/240 (15%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
             V + +G+  I  C             +     +  G+          ++A  +     
Sbjct: 8   PLVEVMRGKSVILDCTPTGTHD---HYMLEWFLTDRSGARP--------RLASAEMQGSE 56

Query: 76  VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEV 133
           +          +    +     +   L +   +  D   Y+C V        +  A L V
Sbjct: 57  LQVTMHDTRGRSPPYQL----DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112

Query: 134 VIPPD--ISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRRED----------NKEI 180
              P+    S       ++ +       C ++ G P PKITW R             +  
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172

Query: 181 IVRSNPPSSQKVFSVESEVLSLTKVTRSEMGA-YQCIAANGVPP-----TVSKRLMLHVH 234
           +       +  + S+ S  L L  + + +  A + C A   +P        S    L +H
Sbjct: 173 MTSRTVREASGLLSLTS-TLYLR-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 4e-15
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           +   + P I+      +     G S ++ C A G P P+I W + DN+ +        S 
Sbjct: 5   VLERVAPTITGNLE--NQTTSIGESIEVSCTASGNPPPQIMWFK-DNETL-----VEDSG 56

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
            V    +  L++ +V + + G Y C A + +
Sbjct: 57  IVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 41/137 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P     LEN T + G     +C                    +G     P      ++ W
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTA------------------SG----NPPP----QIMW 44

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K +           +  ++ + +   +     L IR VR+ED G Y CQ   + +   K
Sbjct: 45  FKDN---------ETLVEDSGIVLKDGNR---NLTIRRVRKEDEGLYTCQA-CSVLGCAK 91

Query: 127 QMAFLEVVIPPDISSEE 143
             AF  +    + ++ E
Sbjct: 92  VEAFFIIEGAQEKTNLE 108

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 71.1 bits (174), Expect = 6e-15
 Identities = 29/153 (18%), Positives = 40/153 (26%), Gaps = 15/153 (9%)

Query: 86  NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEET 144
           N       H ++N   L I        G Y C     +  T     + V           
Sbjct: 120 NGKAFKFFHWNSN---LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNA 176

Query: 145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
           S    + EG    L C+ K     P +                 +S +          + 
Sbjct: 177 SVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQIL 228

Query: 204 KVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
              R + G Y C AA   G     S  L L V 
Sbjct: 229 TARREDSGLYWCEAATEDGNVLKRSPELELQVL 261

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 18/135 (13%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           +  I S    D G Y CQ   +  +     LE+     +    +    +  EG    L C
Sbjct: 49  SYRITSASVNDSGEYRCQRGLSGRSD-PIQLEIHRGWLLLQVSSR---VFTEGEPLALRC 104

Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            A        + + R + K              F   +  L++ K   S  G Y C    
Sbjct: 105 HAWKDKLVYNVLYYR-NGKAFK-----------FFHWNSNLTILKTNISHNGTYHCSGMG 152

Query: 220 GVPPTVSKRLMLHVH 234
                 S  + + V 
Sbjct: 153 KH-RYTSAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 18/86 (20%)

Query: 150 VPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
           V +  +  L C+    P      W   +                    +    +T  + +
Sbjct: 13  VFQEETVTLHCEVLHLPGSSSTQWFL-NGTAT-------------QTSTPSYRITSASVN 58

Query: 209 EMGAYQCIAANGVPPTVSKRLMLHVH 234
           + G Y+C          S  + L +H
Sbjct: 59  DSGEYRCQRGLS---GRSDPIQLEIH 81

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           +  I +   +D G Y CQ   + ++     LEV I   +         +  E     L C
Sbjct: 55  SYFIDAATVDDSGEYRCQTQLSTLSDP-VQLEVHIGWLLLQAPRW---VFKEEDPIHLRC 110

Query: 161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
            +       K+T+ + + K              +   +    + K T  + G+Y C    
Sbjct: 111 HSWKNTALHKVTYLQ-NGKGRK-----------YFHHNSDFYIPKATLKDSGSYFCRGLV 158

Query: 220 GVPPTVSKRLMLHV 233
           G     S+ + + +
Sbjct: 159 GSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
           V E  S  L C+    P  + T    +   I             S ++    +   T  +
Sbjct: 19  VLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------------SSQASSYFIDAATVDD 65

Query: 210 MGAYQCIAANGVPPTVSKRLMLHVH 234
            G Y+C        T+S  + L VH
Sbjct: 66  SGEYRCQTQLS---TLSDPVQLEVH 87

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 112 RGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT 171
           +G          +                 +  +  + V EG + + VC+A G P P I 
Sbjct: 364 QGKEFKDFPDVLLPNYFTC-----RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAIL 418

Query: 172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
           W       +  +SN     ++       L +      + G Y CIAAN      S    L
Sbjct: 419 WLSPRKHLVSAKSNG----RLTVFPDGTLEVRYAQVQDNGTYLCIAANAG-GNDSMPAHL 473

Query: 232 HVH 234
           HV 
Sbjct: 474 HVR 476

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 69.8 bits (170), Expect = 9e-15
 Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 44  VTDTHVNTGGSIVFP---TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTW 100
           V     N   ++V P   + S+   V+      +       + I+ +          +  
Sbjct: 16  VVYITENKNKTVVIPCLGSISNL-NVSLCARYPEKRFVPDGNRISWD----------SKK 64

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLEVVIPPDISS--EETSGDMMVPEGGSAK 157
              I S      G   C+   N  + Q + ++ VV+   I       S  + +  G    
Sbjct: 65  GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 124

Query: 158 LVCKAKGYPTPKITWR------REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
           L C A+      I +       +  +K+++ R     S          L++  VTRS+ G
Sbjct: 125 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184

Query: 212 AYQCIAANGVPPTVSKRLMLHVH 234
            Y C A++G+  T      + VH
Sbjct: 185 LYTCAASSGL-MTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 21/131 (16%)

Query: 28  FTCVVNNLGGHRVSSSVT-----------------DTHVNTGGSIVFP---TDSSAMKVA 67
             C          S                        ++ G  +V          + + 
Sbjct: 79  VFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID 138

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           +      +     + V  +    S +       TL I  V R D+G Y C  ++  MTK+
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198

Query: 128 M-AFLEVVIPP 137
              F+ V   P
Sbjct: 199 NSTFVRVHEDP 209

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP I   +   +  +   G+A L CKA G P P I+W + +         P    +    
Sbjct: 8   PPII--LQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTF-----PGRDPRATIQ 59

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN 219
           E   L +  +  S+ G Y C+A +
Sbjct: 60  EQGTLQIKNLRISDTGTYTCVATS 83

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 39/126 (30%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  L    N T+A    A+  C      G                    P       ++W
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKAT---GD-------------------PLPV----ISW 42

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
           +K                + R ++        TL I+++R  D G Y C   +++  T  
Sbjct: 43  LKEGFT--------FPGRDPRATIQEQG----TLQIKNLRISDTGTYTCVATSSSGETSW 90

Query: 128 MAFLEV 133
            A L+V
Sbjct: 91  SAVLDV 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
            +    +  E       V  GG+  L C+    P+P+I W + D   + +  +P      
Sbjct: 7   GLEEVQLVVEPE--GGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSP------ 57

Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHV 233
                 VL L ++   + G Y C+A +    P  S+ + + +
Sbjct: 58  ------VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 50/133 (37%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           E   +   E   +A G     TC V                         P+      + 
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVP---AQ-------------------PSPQ----IH 43

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--- 124
           W+K               +   L +  +      L +  +  +D+G Y C   T+     
Sbjct: 44  WMK---------------DGVPLPLPPSP----VLILPEIGPQDQGTYSCVA-THSSHGP 83

Query: 125 -TKQMAFLEVVIP 136
              +   + ++ P
Sbjct: 84  QESRAVSISIIEP 96

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
                 E    P    +       V EG S KL C+    P PK+ W+R +N+ +     
Sbjct: 5   HHHHSHEHKRAPMFIYKPQ--SKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMV---QF 58

Query: 186 PPSSQKVFSVESEVLSL--TKVTRSEMGAYQCIAAN 219
                 ++   +  ++L    V + + G Y   A N
Sbjct: 59  NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN 94

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 35/133 (26%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+Y  ++  + +G      C ++                        P      K+ W
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQIS---AI-------------------PP----PKLFW 49

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQ-VNTNPMTKQ 127
            + +        E V  N  R+S+  ++    TL I+ V ++D G+Y    VN   +T  
Sbjct: 50  KRNN--------EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC 101

Query: 128 MAFLEVVIPPDIS 140
              L+V   P+ +
Sbjct: 102 NTRLDVTARPNQT 114

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 68.0 bits (166), Expect = 2e-14
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 37/181 (20%)

Query: 52  GGSIVFPTDSSAMK-----VAWIKADTKAVLA---IHEHVITNNARLSVTHNDANTWTLN 103
           G  I     S  M      + W K   K  +A     +          +  N     TL 
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN----GTLK 69

Query: 104 IRSVRREDRGYYMCQV---NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           I+ ++ +D+  Y   +       + +++  L++           S   +     +  L C
Sbjct: 70  IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------SKPKISWTCINTTLTC 122

Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
           +      P++   + D K +                S+ +   K T S    ++C A N 
Sbjct: 123 EVMNGTDPELNLYQ-DGKHL--------------KLSQRVITHKWTTSLSAKFKCTAGNK 167

Query: 221 V 221
           V
Sbjct: 168 V 168

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
             + + P  SS     D  V EG    L C  +G P P+ITW   + + I        ++
Sbjct: 6   SGMEVAPSFSSVLK--DCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPI------QYAR 56

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                    L +      + G Y C+A N +
Sbjct: 57  STCEAGVAELHIQDALPEDHGTYTCLAENAL 87

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 40/116 (34%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F   L++  + +G+D +  C V    G                    P      ++ W
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVR---GT-------------------PV----PRITW 45

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
           +              I           +A    L+I+    ED G Y C    N +
Sbjct: 46  LLNG---------QPIQYARS----TCEAGVAELHIQDALPEDHGTYTCLA-ENAL 87

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
              I  E T     +  G +  L C A G P P   W + +   +        +      
Sbjct: 3   KLQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPL-----THET------ 48

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             ++  +  V     G Y C   N      SK++ + +
Sbjct: 49  -KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.5 bits (160), Expect = 5e-14
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
             P     +  GD+ V EG   ++ CK  G PTP ++W+  D K +     P S+ K+  
Sbjct: 8   FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV----RPDSAHKMLV 60

Query: 195 VESEVLSLT--KVTRSEMGAYQCIAAN 219
            E+ V SL    VT  + G Y CIA N
Sbjct: 61  RENGVHSLIIEPVTSRDAGIYTCIATN 87

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 41/143 (28%)

Query: 6   GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
           GF P FL    ++T+ +G+     C V                  +G     PT      
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKV------------------SG----LPTP----D 40

Query: 66  VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM- 124
           ++W               +  ++   +   +    +L I  V   D G Y C   TN   
Sbjct: 41  LSWQLDG---------KPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA-TNRAG 90

Query: 125 -TKQMAFLEVVIPPDISSEETSG 146
                  L V       S  +SG
Sbjct: 91  QNSFSLELVVAAKE---SGPSSG 110

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSL 202
           D  V EG    +  + +G P P ++W R + + +         Q+ F+ E+E     L +
Sbjct: 14  DQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPV------RPDQRRFAEEAEGGLCRLRI 66

Query: 203 TKVTRSEMGAYQCIAAN 219
               R + G Y C A N
Sbjct: 67  LAAERGDAGFYTCKAVN 83

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 38/127 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F   L + ++ +G+D I +  V                   G     P       V+W
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRV------------------QG----EPK----PVVSW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
           ++             +  + R      +     L I +  R D G+Y C+   N     +
Sbjct: 40  LRNR---------QPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA-VNEYGARQ 89

Query: 127 QMAFLEV 133
             A LEV
Sbjct: 90  CEARLEV 96

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 14/124 (11%)

Query: 103 NIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS----EETSGDMMVPEGGSAKL 158
            +   +          +N N +  + AFLE V            +T  DM V EG +A+ 
Sbjct: 3   GMSGRKASGSSPTSP-INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARF 61

Query: 159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQC 215
            CK +GYP P++ W + D+  +       S       + E    L++++V   +   Y C
Sbjct: 62  DCKVEGYPDPEVMWFK-DDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115

Query: 216 IAAN 219
            A N
Sbjct: 116 KAVN 119

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 42/142 (29%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F   + ++ + +G  A F C V                   G    +P      +V W
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKV------------------EG----YPD----PEVMW 75

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---- 124
            K D         + +  +    + +++    +L I  V  +D   Y C+   N +    
Sbjct: 76  FKDD---------NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA-VNSLGEAT 125

Query: 125 TKQMAFLEVVIPPDISSEETSG 146
               A L V         E  G
Sbjct: 126 CT--AELLVETMGKEGEGEGEG 145

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP I       +  V   G+  L C A G P P I WR+ D   +          ++  +
Sbjct: 8   PPVIRQGPV--NQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLV-----STQDSRIKQL 59

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
           E+ VL +      + G Y CIA+   G     +    + V 
Sbjct: 60  ENGVLQIRYAKLGDTGRYTCIASTPSG---EATWSAYIEVQ 97

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 41/147 (27%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P       N T+A     + +CV     G                    P  +    + W
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVAT---GS-------------------PVPT----ILW 42

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K            V T ++R+    N      L IR  +  D G Y C   + P     
Sbjct: 43  RKDGVL--------VSTQDSRIKQLENG----VLQIRYAKLGDTGRYTCIA-STPSGEAT 89

Query: 127 QMAFLEVVIPPDISSEETSGDMMVPEG 153
             A++EV             D  +   
Sbjct: 90  WSAYIEVQEFGVPVQPPRPTDPNLIPS 116

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 136 PPDISSEETS--GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
            P  ++ E        VP   + K  C A G P P + W + + KE   +          
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF--KQEHRIGGYKV 60

Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGV 221
             +   L +  V  S+ G Y C+  N  
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEY 88

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 22/132 (16%), Positives = 33/132 (25%), Gaps = 42/132 (31%)

Query: 9   PDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM 64
           P +            +       F C      G+ +                 PT     
Sbjct: 5   PYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPM-----------------PT----- 39

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            + W+K                  R+         W+L + SV   D+G Y C V  N  
Sbjct: 40  -MRWLKNG---------KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEY 88

Query: 125 --TKQMAFLEVV 134
                   L+VV
Sbjct: 89  GSINHTYHLDVV 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 26/161 (16%), Positives = 41/161 (25%), Gaps = 19/161 (11%)

Query: 84  ITNNARLSVTH---NDANTWTLNIRSV-RREDRGYYMCQV-NTNPMTKQMAFLEVVIPPD 138
           I      S T        +  L + +V    +R    C   N     +    + V  P  
Sbjct: 193 ILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPAS 252

Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI---IVRSNPPSSQKVFSV 195
           +                        G P P + W    +       + +         +V
Sbjct: 253 VQLHTAVEMHHWCI------PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
               L L + T    G Y  +AAN  G     S  +M    
Sbjct: 307 RHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 3e-12
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 13/151 (8%)

Query: 90  LSVTHNDANTWTLN-----IRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEET 144
           L       N    +     ++    E  G    Q         +A +        + +  
Sbjct: 105 LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQ 164

Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
             +  V  G    L C+ +G    +  W   +           +  K   + S  L+L  
Sbjct: 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTE------LEQSATVMKSGGLPSLGLTLAN 218

Query: 205 VTR-SEMGAYQCIAANGVPPTVSKRLMLHVH 234
           VT         C A N V       + ++V 
Sbjct: 219 VTSDLNRKNVTCWAENDVGRA-EVSVQVNVS 248

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 17/138 (12%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 15  LENVTIAQGRDA-IFTCVVNNLGGHRVSS---------SVTDTHVNTGGSIVFPTDSSAM 64
           L    +    +    TC   N  G    S         SV             P      
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQ 273

Query: 65  ---KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
               + W+   +   +      I         +       L +      + G Y      
Sbjct: 274 PAPSLRWLFNGS---VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA-A 329

Query: 122 NP--MTKQMAFLEVVIPP 137
           NP            +  P
Sbjct: 330 NPFGQASASIMAAFMDNP 347

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP     +   +M + EG   ++  K  G P P ++W   + + +          K+   
Sbjct: 5   PPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTV----QSDDLHKMIVS 57

Query: 196 ESEVLSL--TKVTRSEMGAYQCIAAN 219
           E  + SL    V  S+ GAY C+A N
Sbjct: 58  EKGLHSLIFEVVRASDAGAYACVAKN 83

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 35/109 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F+   EN++I +GR       V                  +G     P       V+W
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKV------------------SG----LPAP----DVSW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
                          + ++    +  ++    +L    VR  D G Y C
Sbjct: 40  YLNG---------RTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE-------- 198
                 GGS +L C+A G P P+I W  E      + S      ++  V           
Sbjct: 30  SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89

Query: 199 -VLSLTKVTRSEMGAYQCIAANGV 221
             +S+  +   + G Y+C A+N  
Sbjct: 90  STISIDTLVEEDTGTYECRASNDP 113

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 29/120 (24%)

Query: 1   MVPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD 60
           +VP       F+    +     G      C                      GS V P  
Sbjct: 14  LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAV-------------------GSPV-PE- 52

Query: 61  SSAMKVAWIKAD---TKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
                + W             + +    +   +  T++     T++I ++  ED G Y C
Sbjct: 53  -----IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYEC 107

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
             +  +   I ++     M V EG SA+  C   G P P +TW R   + +       S+
Sbjct: 8   SSKTTLAARILTKPR--SMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVL-----STSA 59

Query: 190 QKVFSVESEVLSLT--KVTRSEMGAYQCIAANGV 221
           +   +      +     V  S+ G Y  +  N  
Sbjct: 60  RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 37/115 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              L    ++T+ +G  A F+C  +   G  V                 PT      V W
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTD---GEPV-----------------PT------VTW 48

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
           ++            V++ +AR  VT     + T  I SV+  D G Y   V  N 
Sbjct: 49  LRKG---------QVLSTSARHQVTTTKYKS-TFEISSVQASDEGNYSVVV-ENS 92

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 64.5 bits (156), Expect = 7e-13
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 53/211 (25%)

Query: 52  GGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRRED 111
            GS++   D+ A  + W K                     +     +    N+ S  ++ 
Sbjct: 18  DGSVLLTCDAEAKNITWFKDGKM-----------------IGFLTEDKKKWNLGSNAKDP 60

Query: 112 RGYYMCQVNTNPMTKQM--------------AFLEVVIPPDISSEETSGDMMVP------ 151
           RG Y C+  +   +K +                 +        +++   D          
Sbjct: 61  RGMYQCKG-SQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119

Query: 152 -------EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
                   G +  L C    YP  +I W+  ++K I          K    + + LSL +
Sbjct: 120 TPYKVSISGTTVILTCPQ--YPGSEILWQH-NDKNI----GGDEDDKNIGSDEDHLSLKE 172

Query: 205 VTRSE-MGAYQCIAANGVPPTVSKRLMLHVH 234
            +  E  G Y C      P   +  L L   
Sbjct: 173 FSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 64.5 bits (157), Expect = 7e-13
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 119 VNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
                 +  +     +  P +        +   EG    + C+   YP+  I+W R  + 
Sbjct: 2   TYAAASSALVPRGSHMYAPKLQGPV---AVYTWEGNQVNITCEVFAYPSATISWFR--DG 56

Query: 179 EIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN 219
           +++  SN  + +   +  +  L +T  + ++ G Y C A N
Sbjct: 57  QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 16/100 (16%)

Query: 45  TDTHVNTGGSIVFPTDSSA---MKVAWIKADTKAVLAIHEHVITNNARLSVT-HNDANTW 100
              +   G  +    +  A     ++W +            ++ ++   ++  +N  +  
Sbjct: 26  VAVYTWEGNQVNITCEVFAYPSATISWFRDG---------QLLPSSNYSNIKIYNTPSAS 76

Query: 101 TLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPD 138
            L +      D G Y C    N          L     P 
Sbjct: 77  YLEVTPDSENDFGNYNCTA-VNRIGQESLEFILVQADTPS 115

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I   +   D+ + EG  A+L C+    P   + W   +   +   S      ++  +
Sbjct: 352 APFIM--DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS---RHPRISVL 404

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               L+ + V  S+ G Y C+  N      +    L+V 
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVA-GNSNASAYLNVS 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 19/118 (16%)

Query: 28  FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTD-SSAMKVAWIKADTKAVLAIHEHVITN 86
           F C         +  +  D +++ G              V W+  +   +        + 
Sbjct: 348 FQCSAP-----FIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-----SHASR 397

Query: 87  NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEV-VIPPDISS 141
           + R+SV ++     TLN   V   D G Y C V TN    +   A+L V         
Sbjct: 398 HPRISVLNDG----TLNFSHVLLSDTGVYTCMV-TNVAGNSNASAYLNVSTAGTHHHH 450

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 31/181 (17%)

Query: 48  HVNTGGSIVFPTDSSAMK-----VAWIKADTK-AVLAIHEHVITNNARLSVTHNDANTWT 101
               G  I     +  M      V W +  T  A           +    +  N      
Sbjct: 7   WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN----GD 62

Query: 102 LNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC 160
           L I+++ R+D G Y   V +TN        L++ I   +S           E  +A L C
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY-----WECSNATLTC 117

Query: 161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG 220
           +       ++   +   + +                    +++    +    ++C A N 
Sbjct: 118 EVLEGTDVELKLYQ-GKEHLR--------------SLRQKTMSYQWTNLRAPFKCKAVNR 162

Query: 221 V 221
           V
Sbjct: 163 V 163

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
           D  V     AK   KA G P P   W + D K I         +   S +     L   K
Sbjct: 15  DTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAI-----TQGGKYKLSEDKGGFFLEIHK 68

Query: 205 VTRSEMGAYQCIAAN 219
              S+ G Y C   N
Sbjct: 69  TDTSDSGLYTCTVKN 83

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 36/109 (33%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  +  L++ T++    A F                      TG     P         W
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKA------------------TG----EPR----PTAIW 40

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMC 117
            K             IT   +  ++  D   + L I      D G Y C
Sbjct: 41  TKDG---------KAITQGGKYKLS-EDKGGFFLEIHKTDTSDSGLYTC 79

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
              + EG      C+  G P PKI W + D K+I   S       +        SL    
Sbjct: 17  HYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQI---SPKSDHYTIQRDLDGTCSLHTTA 72

Query: 205 VTRSEMGAYQCIAAN 219
            T  + G Y  +AAN
Sbjct: 73  STLDDDGNYTIMAAN 87

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 37/135 (27%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P F   L++  I +G    FTC V                   G     P      K+ W
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRV------------------AG----NPK----PKIYW 42

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TK 126
            K          + +   +   ++  +   T +L+  +   +D G Y      NP     
Sbjct: 43  FKDG--------KQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA-ANPQGRIS 93

Query: 127 QMAFLEVVIPPDISS 141
               L V       S
Sbjct: 94  CTGRLMVQAVNSGPS 108

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 132 EVVIPPDISSEETSGD-MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           E+  PP I          +   G    LV   +G P P++ W +     +       S  
Sbjct: 17  EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL-----DTSRV 70

Query: 191 KVFSVESE-VLSLTKVTRSEMGAYQCIAAN 219
            V + + + V  + +  RS+ G Y+     
Sbjct: 71  HVRTSDFDTVFFVRQAARSDSGEYELSVQI 100

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.1 bits (150), Expect = 4e-12
 Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 10/152 (6%)

Query: 92  VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVP 151
              N+  T TL +  V   +   Y+C   T    K    ++V I       E      + 
Sbjct: 46  KVTNEGTTSTLTMNPVSFGNEHSYLC-TATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE 104

Query: 152 EGGSAKLVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
            G    + C     YP  +  I   + D+          + +K    +S  ++ T V   
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED 164

Query: 209 EMGAYQCIAAN------GVPPTVSKRLMLHVH 234
                 C A         VP        L V+
Sbjct: 165 IGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
            ++   P           +   G S  L C   G  +P  +WR + +       +P + +
Sbjct: 1   FKIETTP-------ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQID-------SPLNGK 46

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                 +  L++  V+     +Y C A       + K + + ++
Sbjct: 47  VTNEGTTSTLTMNPVSFGNEHSYLCTATCES-RKLEKGIQVEIY 89

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I   E   D+ V EG +A+L C+A       ++W   +   +   +      ++  +
Sbjct: 341 APVIV--EPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA---YKVRIAVL 394

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
               L+ T VT  + G Y C+ +N  G     +    L+V
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVG---NTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 20/116 (17%)

Query: 28  FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFP--TDSSAMKVAWIKADTKAVLAIHEHVIT 85
           FTC         +     D +V  G +        +S   V+WI  +   +         
Sbjct: 337 FTCYAP-----VIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVM-----THGA 386

Query: 86  NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV-IPPD 138
              R++V  +     TLN  +V  +D G Y C V +N +  T   A L V      
Sbjct: 387 YKVRIAVLSDG----TLNFTNVTVQDTGMYTCMV-SNSVGNTTASATLNVTGTHHH 437

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 8e-12
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
                 G +  + C  K     K+      + E ++      S    SV +  L   KV 
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVS--PSNEQVL---SQGSNGSVSVRNGDLFFKKVQ 309

Query: 207 RSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
             + G Y C A          +  + L V+
Sbjct: 310 VEDGGVYTCYAMGETF---NETLSVELKVY 336

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           + P I +      + +  G +  L     G P P  TW    +          + + +  
Sbjct: 1   LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA-----ALAPELLVD 52

Query: 195 VESEVLSLT--KVTRSEMGAYQCIAAN 219
            +S   S+      R++ G Y+    N
Sbjct: 53  AKSSTTSIFFPSAKRADSGNYKLKVKN 79

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 18/115 (15%), Positives = 24/115 (20%), Gaps = 37/115 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  L     + I  G                            G     P         W
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDF------------------IG----APDP----TATW 36

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
              D                 L V    + T ++   S +R D G Y  +V  N 
Sbjct: 37  TVGD---------SGAALAPELLVDAKSSTT-SIFFPSAKRADSGNYKLKV-KNE 80

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPP 187
             L V  PP ISS +T        G   ++ C  +  P P +I W  ++N  +   ++  
Sbjct: 7   GTLTVNGPPIISSTQT---QHALHGEKGQIKCFIRSTPPPDRIAWSWKEN-VLESGTSGR 62

Query: 188 SSQKVFSVESEV---LSLTKVTRSEMGA-YQCIAANGV 221
            + +  S E  V   L+++ + R++    Y C A N  
Sbjct: 63  YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF 100

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
              V +G  A    +  G P P+  W + +  +I            +  E  V  L    
Sbjct: 14  SQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKI----ERSDRIYWYWPEDNVCELVIRD 68

Query: 205 VTRSEMGAYQCIAAN 219
           VT  +  +    A N
Sbjct: 69  VTGEDSASIMVKAIN 83

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 36/116 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P     +++ T+ QG DA F   V                   G     P      +  W
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRV------------------VG----KPD----PECEW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            K   K         I  + R+     + N   L IR V  ED    M +   N  
Sbjct: 40  YKNGVK---------IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA-INIA 85

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
              VP G + + +   +  PT ++ W   +  E+       SS+  ++  S VL+L    
Sbjct: 17  SHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVEL-----QESSKIHYTNTSGVLTLEILD 70

Query: 205 VTRSEMGAYQCIAAN 219
               + G Y+ +  N
Sbjct: 71  CHTDDSGTYRAVCTN 85

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 37/116 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P     + +  +  G++  F   V                         PT     +V W
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNV------------------QS----KPT----AEVKW 42

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
                          +  ++++  T+      TL I     +D G Y     TN  
Sbjct: 43  YHNG---------VELQESSKIHYTNTS-GVLTLEILDCHTDDSGTYRAVC-TNYK 87

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I   +   D  V  G S +L  K  G      TW +   K+I    +         V
Sbjct: 7   GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEH-------MKV 56

Query: 196 ESE----VLSLTKVTRSEMGAYQCIAAN 219
           E+      L++    +   G Y  +  N
Sbjct: 57  ENSENGSKLTILAARQEHCGCYTLLVEN 84

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 37/131 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  +   E+  +  G        V                  TG           +   W
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKV------------------TG----TQP----ITCTW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
           +K             I  +  + V +++  +  L I + R+E  G Y   V N     + 
Sbjct: 42  MKFR---------KQIQESEHMKVENSENGS-KLTILAARQEHCGCYTLLVENKLGSRQA 91

Query: 128 MAFLEVVIPPD 138
              L VV  PD
Sbjct: 92  QVNLTVVDKPD 102

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV------FSVESEVL 200
                 G      C A       +T+    + E +  +   +   +          + +L
Sbjct: 19  TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            L  V  +  G YQC+ +N    + S    L ++
Sbjct: 79  RLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 60.6 bits (146), Expect = 4e-11
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 28  FTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN 87
           +   V +        S                + +  +  ++ + T   L          
Sbjct: 67  YKVTVQDTDTMTSVESEVFLMEEA----ELIVNITEPQHFYVSSQTDVELHATVKFSGGK 122

Query: 88  ARLSVTHNDANTW-----------TLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVI 135
              +  +    +W            + I+    +  G Y  +V   +  +   A  ++++
Sbjct: 123 TP-ADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181

Query: 136 PPDISSEETSGDMMVPEGGSAKL--------VCKAKGYPTPKITWRREDNKE-----IIV 182
                 ++      V  G    L        V  + G P   I +     +E      ++
Sbjct: 182 ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLI 241

Query: 183 RSNPPSSQKVFSVESE-VLSLTKVTRSEMGAYQCIAANG---------VPPTVSKRLMLH 232
            S    + + FS+  +  L     T  +   + C+A            V  + S++  + 
Sbjct: 242 GSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301

Query: 233 V 233
           V
Sbjct: 302 V 302

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 27/135 (20%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGG 154
           NT TL +     E+ G Y   V  +     + +     +     I +        V    
Sbjct: 50  NTATLTVADATSENAGSYKVTV-QDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108

Query: 155 SAKLVCK---AKGYPTPKI-----TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
             +L      + G           +W + +                    ++ +++ + T
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGE---------------DVIDTTQDITIQEFT 153

Query: 207 RSEMGAYQCIAANGV 221
             + G Y        
Sbjct: 154 ADKNGVYTVKVWGES 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 29/180 (16%)

Query: 46  DTHVNTGGSIVF--PTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLN 103
             +    G++ F  P++    +V W K   K     +      ++  +  + D  + +L 
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 104 IRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK 161
           I ++   D   Y  +      T    +  LE+V  P I            E  +A L C+
Sbjct: 64  IYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW----------ECSNATLTCE 113

Query: 162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
                  ++   +   + +                    +++    +    ++C A N V
Sbjct: 114 VLEGTDVELKLYQ-GKEHL--------------RSLRQKTMSYQWTNLRAPFKCKAVNRV 158

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 58.7 bits (141), Expect = 9e-11
 Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 50/237 (21%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
           ++VT+ +G   +  C  +       SS                     + V W +     
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPP-------------------LYVYWFRDGEI- 47

Query: 76  VLAIHEHVITNNA----------RLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM 124
                E V TNN           R  +  +      +L+I   R ED G Y  +V     
Sbjct: 48  -PYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRD 106

Query: 125 TK---QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC----KAKGYPTPKITWRREDN 177
            K   Q   L + +   I   +      +  G   +L C      +  P    +W     
Sbjct: 107 VKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA- 165

Query: 178 KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRLMLHV 233
                     S     +  S  L+LT           C     G   T  + + L+V
Sbjct: 166 ---------LSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 56.9 bits (137), Expect = 9e-11
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 8/81 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPPSSQK-----VFSVESE 198
              V  G     + K K       P I W +    ++  ++      K        V + 
Sbjct: 16  GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75

Query: 199 VLSLTKVTRSEMGAYQCIAAN 219
            + + K   +  G Y+C    
Sbjct: 76  EMQIIKAKDNFAGNYRCEVTY 96

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 45.8 bits (108), Expect = 8e-07
 Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 27/140 (19%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F+   +  T+  G D  F   V                                 + W
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVK-------------------AE---DL-LRKPTIKW 44

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ- 127
            K     + +     +              T+ + I   +    G Y C+V T       
Sbjct: 45  FKGKWMDLASKAGKHLQLKETFERHSRVY-TFEMQIIKAKDNFAGNYRCEV-TYKDKFDS 102

Query: 128 -MAFLEVVIPPDISSEETSG 146
               LEV      +    SG
Sbjct: 103 CSFDLEVHESTGTTPNIDSG 122

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 15/106 (14%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
           V   P I+  E+             +    KG P P + W    N  I+  S    ++  
Sbjct: 1   VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFY--NGAILNESKYICTKIH 53

Query: 193 FSVESE---VLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
            +  +E    L L   T    G Y  IA N  G      K++  H 
Sbjct: 54  VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
            + W       +L   +++ T   ++ VT++      L + +    + G Y      N  
Sbjct: 32  ALQWFYNGA--ILNESKYICT---KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA-KNEY 85

Query: 125 --TKQMAFLEVVIPPDI 139
              ++      +  P I
Sbjct: 86  GKDEKQISAHFMGWPGI 102

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
                 E      +V  G   +L C+ +      I W R D  ++        S +   +
Sbjct: 3   SGSSGVEVE--SFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL------AESNR-TRI 51

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGV 221
             E + +     ++ G Y C+ ++  
Sbjct: 52  TGEEVEVQDSVPADSGLYACVTSSPS 77

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 42/141 (29%)

Query: 6   GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK 65
           G        +E+  +  G      C + +                               
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRD---------------------------DVQS 33

Query: 66  VAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
           + W++   +         +  + R  +T        + ++     D G Y C   ++P  
Sbjct: 34  INWLRDGVQ---------LAESNRTRITGE-----EVEVQDSVPADSGLYACVT-SSPSG 78

Query: 126 KQMAFLEVVIPPDISSEETSG 146
               +  V +   + S  +SG
Sbjct: 79  SDTTYFSVNVSDALPSGPSSG 99

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
           E   P  +  E     ++V  G   +L C+ +      I W R D  ++        S +
Sbjct: 5   EQAQPWGVPVEVE--SLLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQL------VESNR 54

Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGV 221
              +  E + +     ++ G Y C+ ++  
Sbjct: 55  T-RITGEEVEVRDSIPADSGLYACVTSSPS 83

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-- 203
             +  EGG  K VCK + Y    ++TW     +++       S +   + E  V  L   
Sbjct: 10  HAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL-----ENSEKYEITYEDGVAILYVK 63

Query: 204 KVTRSEMGAYQCIAAN 219
            +T+ + G Y+C   N
Sbjct: 64  DITKLDDGTYRCKVVN 79

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 38/122 (31%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
            + +    +G    + C +                              + +V W     
Sbjct: 7   QIMHAVGEEGGHVKYVCKI------------------ENYD-------QSTQVTWYFGVR 41

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFL 131
           +         + N+ +  +T+ D     L ++ + + D G Y C+V  N        A L
Sbjct: 42  Q---------LENSEKYEITYED-GVAILYVKDITKLDDGTYRCKV-VNDYGEDSSYAEL 90

Query: 132 EV 133
            V
Sbjct: 91  FV 92

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 40/147 (27%)

Query: 2   VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS 61
             V+G     +  LE+V + +G  A F C +                          + +
Sbjct: 7   GLVQGRRVHIIEDLEDVDVQEGSSATFRCRI--------------------------SPA 40

Query: 62  SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT 121
           +   V W    T          +  N    +         L +R +  +D G    +   
Sbjct: 41  NYEPVHWFLDKTP---------LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGD 91

Query: 122 NPMTKQMAFLEVVIPPDISSEE--TSG 146
               +  A L V   P + S    +SG
Sbjct: 92  ---QRASAALRVTEKPSVFSRSGPSSG 115

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 12/93 (12%)

Query: 129 AFLEV-VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
           +   V      I  +    D+ V EG SA   C+        + W   D   +       
Sbjct: 5   SSGLVQGRRVHIIEDLE--DVDVQEGSSATFRCRISPANYEPVHWFL-DKTPL-----HA 56

Query: 188 SSQKVFSVESE---VLSLTKVTRSEMGAYQCIA 217
           +       +     VL+L ++   + G     A
Sbjct: 57  NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA 89

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE------DNKEIIVRSNPPSSQKVFSVE 196
             S  + +  G    L C A+      I +  E       +K+++ R     S       
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              L++  VTRS+ G Y C A++G+  T      + VH
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVH 109

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 27/130 (20%)

Query: 12  LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA 71
           L P   + ++ G   +  C                                 + + +   
Sbjct: 12  LSPSHGIELSVGEKLVLNCTA--------------------------RTELNVGIDFNWE 45

Query: 72  DTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AF 130
              +     + V  +    S +       TL I  V R D+G Y C  ++  MTK+   F
Sbjct: 46  YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 105

Query: 131 LEVVIPPDIS 140
           + V   P ++
Sbjct: 106 VRVHEKPFVA 115

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 57.4 bits (138), Expect = 4e-10
 Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 24/178 (13%)

Query: 58  PTDSSAMKVAW---IKADTKAVLAIHEHVITNNARLSVTHNDANTW-----TLNIRSVRR 109
           P + ++M + W        K V           A                 +L +  ++ 
Sbjct: 32  PLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91

Query: 110 EDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT 167
           E+ G Y C+V   P+  Q    LEVV  P           +  +    K +C++ G YP 
Sbjct: 92  EEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ---VGMKENEDKYMCESSGFYPE 148

Query: 168 P-KITWRREDNKEII-------VRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQC 215
              ITW ++  K          V + P        F+V S  L L          YQC
Sbjct: 149 AINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS-CLKLNSSQEDPGTVYQC 205

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 54.1 bits (130), Expect = 8e-10
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 16/108 (14%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           L V  PP + S E              +    +G P P + W         +R +     
Sbjct: 3   LTVYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLHNGQP---LRESKIIHV 54

Query: 191 KVF---SVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
           + +    +    L   K T    G Y  IA N  G   T ++ +  H 
Sbjct: 55  EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG---TANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 15/84 (17%)

Query: 65  KVAWIKADTKAVLAIHEHVITNNARLSVTH---NDANTWTLNIRSVRREDRGYYMCQVNT 121
            + W+              +  +  + V +    + +   L        + G Y      
Sbjct: 36  TLHWLHNGQ---------PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA-K 85

Query: 122 NPM--TKQMAFLEVVIPPDISSEE 143
           NP+    Q      +  P    E 
Sbjct: 86  NPLGTANQTINGHFLKEPFPVDEV 109

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 39  RVSSSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEHVITNNA------ 88
           R   S+ D +  TG ++        +     + W+    + +L  + +            
Sbjct: 5   RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64

Query: 89  RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP 136
           R+ +   + N   L+I +VR+ED+G Y  +V      +    LEV  P
Sbjct: 65  RVYL---EENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 26/126 (20%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
            N++  +G   I  C +++                        T +   +V W + D   
Sbjct: 11  GNISAEKGGSIILQCHLSS------------------------TTAQVTQVNWEQQDQLL 46

Query: 76  VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEV 133
            +   +     +              L ++S+   D G Y C  +T P        FLEV
Sbjct: 47  AICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

Query: 134 VIPPDI 139
           +     
Sbjct: 107 LESSVA 112

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 143 ETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII------VRSNPPSSQKVFS 194
           ET+G++   +GGS  L C          ++ W ++D    I         +P    +V  
Sbjct: 8   ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                L+L  +T ++ G Y CI       T + R+ L V 
Sbjct: 68  GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 10/149 (6%)

Query: 86  NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
           N A L+++    N + +    +    +GY                   +   ++      
Sbjct: 121 NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVE----- 175

Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
               V  G  A   C A G          +                     +   ++   
Sbjct: 176 ----VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS-FNVVNT 230

Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           T+ + G Y+C+        +S    L V 
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVK 259

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 13/98 (13%)

Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPP-----SSQKVFSVESE 198
           D  V  GGS     +  G      P + W +    ++  +         S  +   V   
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 199 VLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHVH 234
            L +T    +  G+Y+C  +              L VH
Sbjct: 73  ELHITDAQPAFTGSYRCEVSTKDK---FDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 25/113 (22%)

Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
           F+   ++  +  G    F+  V      +                  P       V W K
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKP-----------------PV------VKWFK 43

Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
                + +     +  +       +    + L+I   +    G Y C+V +  
Sbjct: 44  GKWVDLSSKVGQHLQLHDSYDR-ASKVYLFELHITDAQPAFTGSYRCEV-STK 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 39/129 (30%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              L PL + T+  G++    C +                            S  +   W
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEI----------------------------SENIPGKW 39

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K             +  + RL V         L I +   ED G Y+            
Sbjct: 40  TKNG---------LPVQESDRLKVVQ-KGRIHKLVIANALTEDEGDYVF-APDAYNVTLP 88

Query: 129 AFLEVVIPP 137
           A + V+  P
Sbjct: 89  AKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 13/89 (14%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
           D  V  G    L C+       K  W + +   +       S +     +  +  L    
Sbjct: 16  DQTVNLGKEICLKCEISENIPGK--WTK-NGLPV-----QESDRLKVVQKGRIHKLVIAN 67

Query: 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
               + G Y           V+    +HV
Sbjct: 68  ALTEDEGDYVFAPDAY---NVTLPAKVHV 93

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 9/154 (5%)

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           W+                            + W   +  + R      + +      + +
Sbjct: 413 WLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIR 472

Query: 128 MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPP 187
            AF +          +      V EG SA   C+      P +TW + D++E+       
Sbjct: 473 DAFWDRSEAQPRFIVKPY-GTEVGEGQSANFYCRVIASSPPVVTWHK-DDREL-----KQ 525

Query: 188 SSQKVFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
           S + +         LT  +V   + G Y   A N
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 38/130 (29%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           + + L  + ++T+     A+F C V++                             +   
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD---------------------------EKVTGK 40

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           W K   +         +  + R++++H       L I  VR ED G Y            
Sbjct: 41  WYKNGVE---------VRPSKRITISH-VGRFHKLVIDDVRPEDEGDYTFVP-DGYALSL 89

Query: 128 MAFLEVVIPP 137
            A L  +   
Sbjct: 90  SAKLNFLEIK 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 14/100 (14%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
             ++  +    D+ V     A   C+          W + +  E+      PS +   S 
Sbjct: 8   QLEVLQDIA--DLTVKAAEQAVFKCEVSD-EKVTGKWYK-NGVEVR-----PSKRITISH 58

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
                 L    V   + G Y  +        +S    L+ 
Sbjct: 59  VGRFHKLVIDDVRPEDEGDYTFVPDGY---ALSLSAKLNF 95

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 21/146 (14%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVI-----PPDISSEETSGDMMVP 151
                 I  +     G Y CQ        + +  LE+V+      P +S       +++ 
Sbjct: 62  TDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS---ADRGLVLM 118

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
            G +  L C +   P  + +  +E    +    +       F       SL  V  +  G
Sbjct: 119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS-GEHPANF-------SLGPVDLNVSG 170

Query: 212 AYQCIAANGVPPTV----SKRLMLHV 233
            Y+C       P +    S  L L V
Sbjct: 171 IYRCYGWYNRSPYLWSFPSNALELVV 196

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA---FLEVVIPPDISSEETSGDMMVPEGG 154
           N    +I S+  +  G Y C   +     Q +    L +       +       +V  G 
Sbjct: 56  NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGK 115

Query: 155 SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
           S  L+C+++  P       +E     ++        +    E     ++ VT    G Y+
Sbjct: 116 SVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE---FPMSPVTSVHGGTYR 171

Query: 215 CIAANGVPPTV----SKRLMLHV 233
           C +++G    +    S  L L V
Sbjct: 172 CFSSHGFSHYLLSHPSDPLELIV 194

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 20/161 (12%)

Query: 86  NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV----NTNPMTKQMAFLEVVI-----P 136
           +   + + H      + N+  V     G Y C+     +    +     + +++      
Sbjct: 60  DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119

Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE 196
           P + +       +V  G    L C +           +E   +   R        V    
Sbjct: 120 PSLLAHPGP---LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKAN 175

Query: 197 SEVLSLTKVTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
               S+  +  +  G Y+C  +    P      S  L + V
Sbjct: 176 ---FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV 213

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 30/143 (20%), Positives = 40/143 (27%), Gaps = 44/143 (30%)

Query: 4   VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA 63
           VR     F   L N    +G  A+  C +                            S  
Sbjct: 15  VRALPIKFTEGLRNEEATEGATAVLRCEL----------------------------SKM 46

Query: 64  MKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
             V W K             + +  R S+   D     L IR +  ED G Y+C      
Sbjct: 47  APVEWWKGH---------ETLRDGDRHSLRQ-DGARCELQIRGLVAEDAGEYLCMCGK-- 94

Query: 124 MTKQMAFLEVVIPPDISSEETSG 146
             +  A L V   P   S  +SG
Sbjct: 95  -ERTSAMLTVRAMP---SGPSSG 113

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 120 NTNPMTKQMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK 178
           ++    +  A L V  +P   +      +    EG +A L C+        + W +  ++
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLR--NEEATEGATAVLRCELSK--MAPVEWWK-GHE 56

Query: 179 EIIVRSNPPSSQKVFSVESEVLSLT--KVTRSEMGAYQCIA 217
            +         +     +     L    +   + G Y C+ 
Sbjct: 57  TL-----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 101 TLNIRSVRREDRGYYMCQVNTNPMTKQMAF-LEVVIPPDISSEETSGDMMVPEGGSAKLV 159
           T  +  V+    G Y+  ++   +  Q+   L V  PP +S    +     P     +L+
Sbjct: 255 TFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELL 314

Query: 160 CKAKG-YPTP--KITWRREDNKEIIVRSNPPSSQKV---------FSVESEVLSLTKVTR 207
           C     YP+   ++ W          +                   S+    L    VT 
Sbjct: 315 CLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSG-HLQPPPVTT 373

Query: 208 SEMGA-YQC 215
            + GA Y C
Sbjct: 374 EQHGARYAC 382

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 38/133 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                 L+ + + +G    F CV+++                         +S++    W
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSH-------------------------ESASDPAMW 43

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
                          + +++R   T      + L +R     D G  +  V         
Sbjct: 44  TVGGKT---------VGSSSRFQATR-QGRKYILVVREAAPSDAGEVVFSVRG---LTSK 90

Query: 129 AFLEVVIPPDISS 141
           A L V      SS
Sbjct: 91  ASLIVRERSGPSS 103

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 9/76 (11%)

Query: 147 DMMVPEGGSAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-- 203
            M V EG S    C  +    +    W     K +       SS+   + +     L   
Sbjct: 17  TMEVLEGESCSFECVLSHESASDPAMWTV-GGKTV-----GSSSRFQATRQGRKYILVVR 70

Query: 204 KVTRSEMGAYQCIAAN 219
           +   S+ G        
Sbjct: 71  EAAPSDAGEVVFSVRG 86

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 13/93 (13%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           ++         +       V +G   +L  +       ++ W + + +EI        S 
Sbjct: 10  MDEKKSTAFQKKLEP-AYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEI------QMSG 60

Query: 191 KVFSVESE----VLSLTKVTRSEMGAYQCIAAN 219
             +  ES      L++++ + ++  AYQC+   
Sbjct: 61  SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 43/138 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F   L+++ + +G  A   CV++                           S A  V W
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLS---------------------------SVAAPVKW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
              +         +V+    + S+   +     L +R++R +D G Y C           
Sbjct: 42  CYGN---------NVLRPGDKYSLRQ-EGAMLELVVRNLRPQDSGRYSCSFGD---QTTS 88

Query: 129 AFLEVVIPPDISSEETSG 146
           A L V   P   S  +SG
Sbjct: 89  ATLTVTALP---SGPSSG 103

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           P          D+ V EGG+A L C       P + W    N  +      P  +     
Sbjct: 8   PVRFQEALK--DLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVL-----RPGDKYSLRQ 58

Query: 196 ESEVLSLT--KVTRSEMGAYQCIA 217
           E  +L L    +   + G Y C  
Sbjct: 59  EGAMLELVVRNLRPQDSGRYSCSF 82

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 17/151 (11%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI-----PPDISSEETSG 146
                     I S+  E  G Y C   ++    ++    LE+V+      P +S      
Sbjct: 52  QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLS---AQP 108

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
             +V  GG+  L C ++          +E   E     N  S          + S+  V+
Sbjct: 109 SPVVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHPQCLN--SQPHARGSSRAIFSVGPVS 165

Query: 207 RSEMGAYQCIAANGVPPTV----SKRLMLHV 233
            S    Y+C A +   P      S  L L V
Sbjct: 166 PSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           P  I S +    +         L C+         TW + D +++       S   V  +
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYK-DGQKV-----EESELLVVKM 60

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAAN 219
           +     L   +    + G ++C    
Sbjct: 61  DGRKHRLILPEAKVQDSGEFECRTEG 86

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 42/135 (31%)

Query: 9   PDFLYPLE--NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV 66
              L P +  ++T       + TC ++ +                               
Sbjct: 9   VHILSPQDKVSLTFTTSERVVLTCELSRVDF---------------------------PA 41

Query: 67  AWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
            W K   K         +  +  L V   D     L +   + +D G + C+        
Sbjct: 42  TWYKDGQK---------VEESELLVVKM-DGRKHRLILPEAKVQDSGEFECRTEG---VS 88

Query: 127 QMAFLEVVIPPDISS 141
               + V  P   SS
Sbjct: 89  AFFGVTVQDPSGPSS 103

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVI-----PPDISSEETSGDMMVP 151
           +   L I +++R   G Y C   N +  +     LE+V       P +S         V 
Sbjct: 50  DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS---AQPGPAVS 106

Query: 152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG 211
            GG   L C+ +     +    +E +            +  F        +  VT +  G
Sbjct: 107 SGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE-RWYRASF-------PIITVTAAHSG 157

Query: 212 AYQCIAANGVPPTV----SKRLMLHV 233
            Y+C + +   P +    S  L L V
Sbjct: 158 TYRCYSFSSRDPYLWSAPSDPLELVV 183

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           P  I +     D  V  G   ++  +       ++ W +   +  + R +   ++  F  
Sbjct: 8   PVLIVTPLE--DQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVE--LTREDSFKARYRFKK 62

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANG 220
           + +   L    V + + G YQ I   G
Sbjct: 63  DGKRHILIFSDVVQEDRGRYQVITNGG 89

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 42/128 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              + PLE+  +  G        V+  G                             V W
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVSEEGAQ---------------------------VMW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTH---NDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
           +K   +         +T        +    D     L    V +EDRG Y          
Sbjct: 42  MKNGVE---------LTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT-NGGQC 91

Query: 126 KQMAFLEV 133
           +  A L V
Sbjct: 92  E--AELIV 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
           ++ V E G+A   CK   +P   +TWR+    E+       S +   S E   L LT   
Sbjct: 17  NLQVEEKGTAVFTCKT-EHPAATVTWRK-GLLEL-----RASGKHQPSQEGLTLRLTISA 69

Query: 205 VTRSEMGAYQCIAAN 219
           + +++   Y C    
Sbjct: 70  LEKADSDTYTCDIGQ 84

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 41/134 (30%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F   L N+ + +   A+FTC   +                       P    A  V W
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKTEH-----------------------P----AATVTW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K             +  + +   +  +  T  L I ++ + D   Y C +      +  
Sbjct: 42  RKGL---------LELRASGKHQPS-QEGLTLRLTISALEKADSDTYTCDIGQ---AQSR 88

Query: 129 AFLEV-VIPPDISS 141
           A L V       SS
Sbjct: 89  AQLLVQGRRSGPSS 102

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           P  I       D  V  G   +L C+     TP + W + D K I       S +     
Sbjct: 8   PAAIIKPLE--DQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAI-----RKSQKYDVVC 58

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAANG 220
           E  +  L     +  + G Y C     
Sbjct: 59  EGTMAMLVIRGASLKDAGEYTCEVEAS 85

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 43/138 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              + PLE+  +A G D    C ++                            +   V W
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSR---------------------------AGTPVHW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
           +K             I  + +  V   +     L IR    +D G Y C+V     +   
Sbjct: 42  LKDR---------KAIRKSQKYDVVC-EGTMAMLVIRGASLKDAGEYTCEVE-ASKST-- 88

Query: 129 AFLEVVIPPDISSEETSG 146
           A L V       S  +SG
Sbjct: 89  ASLHVEEKA---SGPSSG 103

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 40/126 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F     +V +A G  A+F                               + + +KV W
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAET---------------------------ERAGVKVRW 41

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            +  +          I+ + +  +   +    TL +R V   D+G Y     +   +K  
Sbjct: 42  QRGGSD---------ISASNKYGLAT-EGTRHTLTVREVGPADQGSYAVIAGS---SKVK 88

Query: 129 AFLEVV 134
             L+V+
Sbjct: 89  FDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE----VLSL 202
            + V  G  A    + +     K+ W+R    +I       +S K + + +E     L++
Sbjct: 17  SVEVAAGSPAVFEAETER-AGVKVRWQR-GGSDI------SASNK-YGLATEGTRHTLTV 67

Query: 203 TKVTRSEMGAYQCIAAN 219
            +V  ++ G+Y  IA +
Sbjct: 68  REVGPADQGSYAVIAGS 84

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 9/75 (12%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
            + V  G +A    +    P     W+    + +       S       + +   L    
Sbjct: 14  GVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPL-----AASPDCEIIEDGKKHILILHN 66

Query: 205 VTRSEMGAYQCIAAN 219
                 G     AAN
Sbjct: 67  CQLGMTGEVSFQAAN 81

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 16/125 (12%), Positives = 28/125 (22%), Gaps = 40/125 (32%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
            +   PL  V +  G  A F   ++                              +   W
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSE---------------------------PDVHGQW 38

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
                          +  +    +   D     L + + +    G    Q      TK  
Sbjct: 39  KLKGQP---------LAASPDCEIIE-DGKKHILILHNCQLGMTGEVSFQAAN---TKSA 85

Query: 129 AFLEV 133
           A L+V
Sbjct: 86  ANLKV 90

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--K 204
           D     G   +L C+        + W + + +EII     P S+    VE +   L    
Sbjct: 16  DTTAYCGERVELECEVSE-DDANVKWFK-NGEEII---PGPKSRYRIRVEGKKHILIIEG 70

Query: 205 VTRSEMGAYQCIAANG 220
            T+++   Y  +   G
Sbjct: 71  ATKADAAEYSVMTTGG 86

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 18/133 (13%), Positives = 26/133 (19%), Gaps = 38/133 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
                 LE+ T   G      C V+                                V W
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSEDDA---------------------------NVKW 40

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K   + +                   +     L I    + D   Y          +  
Sbjct: 41  FKNGEEIIPGPKSRY--------RIRVEGKKHILIIEGATKADAAEYSVMTTG---GQSS 89

Query: 129 AFLEVVIPPDISS 141
           A L V +    SS
Sbjct: 90  AKLSVDLKSGPSS 102

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* Length = 213

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 36/140 (25%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
              +  I S+  ED G Y CQ     P T    F     LE+          + PP  SS
Sbjct: 69  RDSSFTISSLESEDIGSYYCQQYYNYPWT----FGPGTKLEIKRADAKPTVSIFPP--SS 122

Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDN--KEIIVRSNPPSSQK--VFSV 195
           E+          GSA LVC     YP    + W+ + +  ++ +++S      K   +S+
Sbjct: 123 EQLG-------TGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSL 175

Query: 196 ESEVLSLTKVTRSEMGAYQC 215
            S  LSLTK        Y C
Sbjct: 176 SS-TLSLTKADYERHNLYTC 194

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT--KVTR 207
           V +GG  + V +    P  ++ W + + +EI      PS++ +F  +     L       
Sbjct: 20  VDKGGRVRFVVEL-ADPKLEVKWYK-NGQEI-----RPSTKYIFEHKGCQRILFINNCQM 72

Query: 208 SEMGAYQCIAAN 219
           ++   Y   A +
Sbjct: 73  TDDSEYYVTAGD 84

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/130 (12%), Positives = 29/130 (22%), Gaps = 41/130 (31%)

Query: 9   PDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
             F   L+    + +G    F   + +                             ++V 
Sbjct: 8   AAFAKILDPAYQVDKGGRVRFVVELAD---------------------------PKLEVK 40

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
           W K   +         I  + +    H       L I + +  D   Y         +  
Sbjct: 41  WYKNGQE---------IRPSTKYIFEH-KGCQRILFINNCQMTDDSEYYVTAGDEKCS-- 88

Query: 128 MAFLEVVIPP 137
              L V   P
Sbjct: 89  -TELFVRSGP 97

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 22/129 (17%), Positives = 31/129 (24%), Gaps = 41/129 (31%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
             F   L+    ++G  A   C +                            S    V W
Sbjct: 9   ARFTQDLKTKEASEGATATLQCEL----------------------------SKVAPVEW 40

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM 128
            K             + +  R S+   D     L I  +   D G Y C        +  
Sbjct: 41  KKGPET---------LRDGGRYSLKQ-DGTRCELQIHDLSVADAGEYSCMCGQ---ERTS 87

Query: 129 AFLEVVIPP 137
           A L V   P
Sbjct: 88  ATLTVRALP 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 22/106 (20%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           P   + +         EG +A L C+        + W++   + +         +     
Sbjct: 8   PARFTQDLK--TKEASEGATATLQCELS--KVAPVEWKK-GPETL-----RDGGRYSLKQ 57

Query: 196 ESEVLSLT--KVTRSEMGAYQCIAAN----------GVPPTVSKRL 229
           +     L    ++ ++ G Y C+              +P   ++  
Sbjct: 58  DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGS 103

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L Length = 252

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 37/155 (23%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV----------VIPPDISS 141
             +TL I  V  ED G Y C   +         TK    LE+          + PP  SS
Sbjct: 107 TDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTK----LELKRADAAPTVSIFPP--SS 160

Query: 142 EETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRRED----NKEIIVRSNPPSSQKVFSV 195
           E+ +        G A +VC    +      + W+ +     N  +   ++  S    +S+
Sbjct: 161 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 213

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRL 229
            S  L+LTK       +Y C A +      + K  
Sbjct: 214 SS-TLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 247

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 21/107 (19%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVC---KAKGYPTPKITWRREDNKEI----IVRSNPPS 188
            P                      C      G P P + W   +   +     + +    
Sbjct: 3   MPASVQLH--------TAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLE 53

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAAN--GVPPTVSKRLMLHV 233
                +V    L L + T    G Y  +AAN  G     S  +M   
Sbjct: 54  PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG---QASASIMAAF 97

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 23/146 (15%), Positives = 36/146 (24%), Gaps = 14/146 (9%)

Query: 99  TWTLNIRSVRREDRGYYMCQVNTNPMTKQM-AFLEVVIPPDISSEETSGDMMVPEGGSAK 157
            W        RE     +C       T Q    +     PD   E        P G +  
Sbjct: 50  RWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD-RVELMPLPPWQPVGENFT 108

Query: 158 LVCKAKG-YPTPK--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQ 214
           L C+  G  P     +T  R    + ++R +               ++          + 
Sbjct: 109 LSCRVPGAGPRASLTLTLLRGA--QELIRRSFAGEPPRARGAVLTATVLARREDHGANFS 166

Query: 215 CIAAN-------GVPPTVSKRLMLHV 233
           C A         G+    S    L  
Sbjct: 167 CRAELDLRPHGLGLFENSSAPRELRT 192

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 58  PTDSSAMKVAWIKADTKAVLAIHEH----VITNNARLSVTHNDANT----WTLNIRSVRR 109
              +   ++ W +      +A+         + + RL              +L +  +R 
Sbjct: 29  MEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV 88

Query: 110 EDRGYYMCQVNTNPM--TKQMAFLEVVIPP 137
           ED G Y C   T P        +L V+  P
Sbjct: 89  EDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 33/115 (28%)

Query: 17  NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
            +       A   C   N                           S + V W   +   +
Sbjct: 3   KIQAYFNETADLPCQFANSQ---------------------NQSLSELVVFWQDQENLVL 41

Query: 77  LAIHEHVITNNARLSVTHN--------DANTWTLNIRSVRREDRGYYMCQVNTNP 123
                 V     +    H+        D+++WTL + +++ +D+G Y C ++   
Sbjct: 42  N----EVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 132 EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQK 191
           +VV   +  +     ++    G SA L C+       ++TW + D K++       SS+ 
Sbjct: 8   KVVFAKEQPAHR---EVQAEAGASATLSCEVAQ-AQTEVTWYK-DGKKL-----SSSSKV 57

Query: 192 VFSVESEVLSLT--KVTRSEMGAYQCIAAN 219
                     L   +  ++E G Y C A  
Sbjct: 58  RVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 9/88 (10%)

Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
            +   I        +         L C+    P  ++ W + D +E+       S   + 
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEV-----VESPALLL 61

Query: 194 SVESEVLSLT--KVTRSEMGAYQCIAAN 219
             E  V  L    V   + G Y C   +
Sbjct: 62  QKEDTVRRLVLPAVQLEDSGEYLCEIDD 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 42/138 (30%)

Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
           +      V   +    + TC +                         P      +V W K
Sbjct: 16  YPSGKVYVAAVRLERVVLTCELCR-----------------------PW----AEVRWTK 48

Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF 130
              +         +  +  L +   +     L + +V+ ED G Y+C+++    +     
Sbjct: 49  DGEE---------VVESPALLLQK-EDTVRRLVLPAVQLEDSGEYLCEIDDESAS---FT 95

Query: 131 LEVVIPP--DISSEETSG 146
           + V  PP   I S  +SG
Sbjct: 96  VTVTEPPVRIIYSGPSSG 113

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 17/122 (13%)

Query: 36  GGHRVSSSVTDTHVNTGGSIVFPTDSSAMK----VAWIKADTKAVLAIHEHVITN----- 86
            G      +    V +G ++      S  +    + W     + ++              
Sbjct: 3   SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF 62

Query: 87  NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA--FLEVVIP---PDISS 141
             R+ +   D  +  L I  V++ED   Y+ +V      +Q     L+V+ P   P I  
Sbjct: 63  KGRVRL---DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKI 119

Query: 142 EE 143
           E+
Sbjct: 120 EK 121

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMA-FLEVVI-----PPDISSEETSG 146
                N    +I S+     G Y C   +     + +  LE+V+      P +S+  +  
Sbjct: 51  PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP- 109

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEV-LSLTKV 205
             +V  G +  L C ++     +     E + ++    +   SQ   S + +    +  V
Sbjct: 110 --VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD---SQLTPSGQFQALFPVGPV 163

Query: 206 TRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
           T S     +C  +      V    S  L + V
Sbjct: 164 TPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV 195

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 16/173 (9%)

Query: 66  VAWIKADTKAVLAIHEHVITNNARLSV----THNDANTWTLNIRSVRREDRGYYMCQVN- 120
           + W +    A   I+     +  R++     T  +   ++++I ++   D G Y C    
Sbjct: 36  IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFR 95

Query: 121 -----TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWR 173
                T   +     L V   P             P   +    C++ G+      + W 
Sbjct: 96  KGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP-QHTVSFTCESHGFSPRDITLKWF 154

Query: 174 REDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
           +  N+    ++N     +   +S+ S    +            C  A+     
Sbjct: 155 KNGNELSDFQTNVDPVGESVSYSIHS-TAKVVLTREDVHSQVICEVAHVTLQG 206

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 14/145 (9%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVVIPPDISSEETSGDM--MV 150
               N     I  +     G Y C        ++    L++V+     +   S      V
Sbjct: 54  PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEV 113

Query: 151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM 210
             G      C+     +      +E     + R      Q  F        L  VT +  
Sbjct: 114 ISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGY-GKVQAEF-------PLGPVTTAHR 164

Query: 211 GAYQCIAA--NGVPPTVSKRLMLHV 233
           G Y+C  +  N      S+ + L V
Sbjct: 165 GTYRCFGSYNNHAWSFPSEPVKLLV 189

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A Length = 200

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 86  NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISS 141
              R S   +       L ++ ++ +D   Y+C V  +  +    F     +++ P I +
Sbjct: 55  EKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQN 114

Query: 142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV-ESEVL 200
            + +   +     S K VC    + +     + +D+   I      + + V  +   +  
Sbjct: 115 PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI------TDKCVLDMRSMDFK 168

Query: 201 SLTKVTRSEMGAYQC 215
           S + V  S    + C
Sbjct: 169 SNSAVAWSNKSDFAC 183

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A Length = 218

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 35/163 (21%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 88  ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF------LEV-------- 133
            R S   +      L+I +++ ED   Y+C V      + +        + V        
Sbjct: 64  DRFSG-SSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTP 122

Query: 134 ---VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNP 186
              V PP  SSEE            A LVC      P+   + W+  +   I   V ++ 
Sbjct: 123 TLTVFPP--SSEELK-------ENKATLVCLISNFSPSGVTVAWKA-NGTPITQGVDTSN 172

Query: 187 PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL 229
           P+ +    + S  L LT        ++ C   +    TV K L
Sbjct: 173 PTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHE-GDTVEKSL 214

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 Length = 438

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 87  NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV------- 133
             R S +      +TL I  V  +D   Y CQ +          TK    L++       
Sbjct: 63  PDRFSGS-GSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTK----LDLKRADAAP 117

Query: 134 -VIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPP- 187
            V     SSE+ +        G A +VC    + P    + W + D  E    V ++   
Sbjct: 118 TVSIFPPSSEQLT-------SGGASVVCFLNNFYPKDINVKW-KIDGSERQNGVLNSWTD 169

Query: 188 --SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY 237
             S    +S+ S  L+LTK       +Y C A +    +   +      C  
Sbjct: 170 QDSKDSTYSMSS-TLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEV 220

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 212

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 35/140 (25%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPM--------TKQMAFLEV-----------VIPPD 138
            T TL I   + ED   Y C  +            T+    L V           V PP 
Sbjct: 67  TTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQ----LTVLRGPKSSPKVTVFPP- 121

Query: 139 ISSEETSGDMMVPEGGSAKLVCKA-KGYPT-PKITWRREDN-KEIIVRSNPPSSQKVFSV 195
            S EE            A LVC     YP    +TW+         V++  PS Q    +
Sbjct: 122 -SPEELR-------TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYM 173

Query: 196 ESEVLSLTKVTRSEMGAYQC 215
            S  LSLT           C
Sbjct: 174 TSSYLSLTADQWKSHNRVSC 193

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 20/153 (13%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQ--VNTNPM--TKQMAFLEVVI----PPDISSEET 144
            H+  +    +I  + ++  G Y C   V  +P   +     L++VI         S + 
Sbjct: 56  HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP 115

Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
                V  G +  L C ++          RE           P     F  +     L  
Sbjct: 116 GP--TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQAD---FPLGP 169

Query: 205 VTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
            T    G Y+C  +    P      S  L++ V
Sbjct: 170 ATHG--GTYRCFGSFHDSPYEWSKSSDPLLVSV 200

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 26/150 (17%), Positives = 38/150 (25%), Gaps = 24/150 (16%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQVNT--------NPMTKQMAFLEVVIPPDISSEETS 145
               N     I  +     G Y C            N +      L V    D  +    
Sbjct: 51  PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLD-----LVVTEMYDTPTLSVH 105

Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
               V  G      C+     +      +E      V+      Q  F        L  V
Sbjct: 106 PGPEVISGEKVTFYCRLDTATS-MFLLLKEGRSS-HVQRGYGKVQAEF-------PLGPV 156

Query: 206 TRSEMGAYQCIAA--NGVPPTVSKRLMLHV 233
           T +  G Y+C  +  N      S+ + L V
Sbjct: 157 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           P  +   E    + V  G S +L C+         + WR  D     V+S+   S     
Sbjct: 7   PLQVEPPEPV--VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS----- 59

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               VL++   + S  G   C+ + G   T    + L V+
Sbjct: 60  ----VLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVY 94

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... Length = 212

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 37/160 (23%), Positives = 53/160 (33%), Gaps = 41/160 (25%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEV-----------VIP 136
               +   L I   + ED   Y C + +N        TK    L V           + P
Sbjct: 67  SLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTK----LTVLGQPKSSPTVTLFP 122

Query: 137 PDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPPSSQK- 191
           P  SSEE S          A LVC     YP    + W+  D   +   + +  PS Q  
Sbjct: 123 P--SSEELS-------TAKATLVCTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSN 172

Query: 192 -VFSVESEVLSLTKVTRSEMGAYQCIAANG---VPPTVSK 227
             +   S  L+LT        +Y C   +       T+S+
Sbjct: 173 NKYMASS-YLTLTARAWERHSSYSCQVTHEGHSSNKTLSR 211

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* Length = 237

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 39/156 (25%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
             +TL I S++ ED   Y CQ   T P T    F     +E+          + PP  S 
Sbjct: 92  TDFTLTISSLQPEDFATYYCQQSYTTPPT----FGQGTKVEIKRTVAAPSVFIFPP--SD 145

Query: 142 EETSGDMMVPEGGSAKLVCKA-KGYPTP-KITWRREDNKEI---IVRSNPPSSQK--VFS 194
           E+          G+A +VC     YP   K+ W+  DN         S      K   +S
Sbjct: 146 EQLK-------SGTASVVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYS 197

Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKRL 229
           + S  L+L+K    +   Y C   + G+   V+K  
Sbjct: 198 LSS-TLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 22/154 (14%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQ--VNTNPMTKQM--AFLEVVI-----PPDISSEE 143
            H+  +    +I  + ++  G Y C   V  +P         L++VI      P +S++ 
Sbjct: 55  HHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP 114

Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
                 V  G S  L C ++          RE        S  P     F  +     L 
Sbjct: 115 GP---TVLAGESVTLSCSSR-SSYDMYHLSREGEAHERRFSAGPKVNGTFQAD---FPLG 167

Query: 204 KVTRSEMGAYQCIAANGVPPTV----SKRLMLHV 233
             T    G Y+C  +    P      S  L++ V
Sbjct: 168 PATHG--GTYRCFGSFRDSPYEWSNSSDPLLVSV 199

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 8/93 (8%)

Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
           +V    +  L C +           RE   +  +         V        S+  + + 
Sbjct: 17  LVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKAN---FSIGPMMQD 72

Query: 209 EMGAYQCIAANGVPPTV----SKRLMLHVHCTY 237
             G Y+C  +    P      S  L + +   Y
Sbjct: 73  LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLY 105

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... Length = 216

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 38/156 (24%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEV----------VIPPDIS 140
            + TL I  ++  D   Y C    + +       TK    LE+          + PP  S
Sbjct: 70  TSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTK----LEIKRTVAAPSVFIFPP--S 123

Query: 141 SEETSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRREDNKEII--VRSNPPSSQKVFS-- 194
            E+          G+A +VC     YP   K+ W+  DN       + +        S  
Sbjct: 124 DEQLK-------SGTASVVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTY 175

Query: 195 VESEVLSLTKVTRSEMGAYQCIAA-NGVPPTVSKRL 229
             S  L+L+K    +   Y C     G+   V+K  
Sbjct: 176 SLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPP-----SSQKVFSVESE 198
            + V  G  A +V K  G      P I W +    E+  +S        S     +V + 
Sbjct: 21  SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTV 80

Query: 199 VLSLTKVTRSEMGAYQCIAAN 219
            L + KV   + G Y+     
Sbjct: 81  ELHIGKVVLGDRGYYRLEVKA 101

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 31/130 (23%)

Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
           FL   ++V++  G+DA+    VN                                + W K
Sbjct: 15  FLKKPDSVSVETGKDAVVVAKVNGKELPD-----------------------KPTIKWFK 51

Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDAN---TWTLNIRSVRREDRGYYMCQVNTNPMTKQ 127
                + +              +HN A+   T  L+I  V   DRGYY  +V        
Sbjct: 52  GKWLELGSKSGARF----SFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDS 107

Query: 128 MAF-LEVVIP 136
             F ++V  P
Sbjct: 108 CGFNIDVEAP 117

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* Length = 210

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 38/141 (26%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
             +TL I  V  +D   Y CQ     P+T    F     LE+          + PP  S+
Sbjct: 68  TDFTLTIDPVEADDTAIYFCQQSWNGPLT----FGAGTKLELKRADAAPTVSIFPP--ST 121

Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEI---IVRSNPPSSQK--VFS 194
           E+ +        G A +VC     YP    + W+  D  E    ++ S      K   +S
Sbjct: 122 EQLA-------TGGASVVCLMNNFYPRDISVKWKI-DGTERRDGVLDSVTDQDSKDSTYS 173

Query: 195 VESEVLSLTKVTRSEMGAYQC 215
           + S  LSLTK        Y C
Sbjct: 174 M-SSTLSLTKADYESHNLYTC 193

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 14/113 (12%)

Query: 37  GHRVSSSVTDTHVNTGGSIVFP------TDSSAMKVAWIKADTKAVLAIHEHVITNNA-- 88
           GH    +         G +              + V W+       + I     T +   
Sbjct: 1   GHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60

Query: 89  ------RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI 135
                 RL V+H      +L I +++ +DR +Y C+V            + +I
Sbjct: 61  QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKII 113

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} Length = 233

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 32/140 (22%), Positives = 51/140 (36%), Gaps = 36/140 (25%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
             +   I ++  ED   Y C   +  P T    F     LE+          + PP  SS
Sbjct: 91  TDFVFTIENMLSEDVADYYCLQSDNLPYT----FGGGTNLEIKRADAAPTVSIFPP--SS 144

Query: 142 EETSGDMMVPEGGSAKLVCKA-KGYPTP-KITWRRED----NKEIIVRSNPPSSQKVFSV 195
           E+ +        G A +VC     YP    + W+ +     N  +   ++  S    +S+
Sbjct: 145 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 197

Query: 196 ESEVLSLTKVTRSEMGAYQC 215
            S  L+LTK       +Y C
Sbjct: 198 SS-TLTLTKDEYERHNSYTC 216

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 Length = 242

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 38/157 (24%)

Query: 89  RLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL---------------- 131
           +  V    + +T TL I +V ++D   Y C +                            
Sbjct: 68  KFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD 127

Query: 132 -----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRS 184
                +  I     +E            +   +C  + + P   KI W  E     I+ S
Sbjct: 128 ADVSPKPTIFLPSIAETKL-------QKAGTYLCLLEKFFPDVIKIHW-EEKKSNTILGS 179

Query: 185 NPPSSQKV--FSVESEVLSLTKVTRSEMG-AYQCIAA 218
              ++ K     ++    S   V    +   ++CI  
Sbjct: 180 QEGNTMKTNDTYMKF---SWLTVPEKSLDKEHRCIVR 213

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A Length = 240

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 21/147 (14%)

Query: 89  RLSVTHNDANTWTLNIRSVRREDRGYYMCQ----------VNTNPMTKQMAFLEVVIPPD 138
           R SV   D     +N+ ++  ED   Y C                    +  L  V PP 
Sbjct: 64  RFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPK 123

Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEI---IVRSNPPSSQK-- 191
           +S  E S   +      A LVC A+G+     +++W   + KE+   +        +   
Sbjct: 124 VSLFEPSKAEI-ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQAYKESNY 181

Query: 192 VFSVESEVLSLTKVT-RSEMGAYQCIA 217
            +S+ S  L ++     +    ++C  
Sbjct: 182 SYSLSS-RLRVSATFWHNPRNHFRCQV 207

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} Length = 254

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 22/133 (16%)

Query: 98  NTWTLNIRSVRREDRGYYMC-QVNTNPMTKQMAF-----LEV---VIPPDISSEETSGDM 148
             +TL I  V  ED G Y C Q +  P T    F     LE+      P +S    S + 
Sbjct: 111 TDFTLKISRVEAEDLGIYYCVQGSHFPPT----FGAGTKLELKRADAAPTVSIFPPSSEQ 166

Query: 149 MVPEGGSAKLVCKAKG-YPTP-KITWRRED----NKEIIVRSNPPSSQKVFSVESEVLSL 202
           +    G A +VC     YP    + W+ +     N  +   ++  S    +S+ S  L+L
Sbjct: 167 L--TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-SSTLTL 223

Query: 203 TKVTRSEMGAYQC 215
           TK       +Y C
Sbjct: 224 TKDEYERHNSYTC 236

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 8/131 (6%)

Query: 87  NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
             R+S T N       L I+  + ED   Y+C  NT           + + P+I + + +
Sbjct: 58  KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPA 117

Query: 146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK 204
              +     S K VC          ++  ++ +  I           +     +  S + 
Sbjct: 118 VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYI------TDKTVLDMRSMDFKSNSA 171

Query: 205 VTRSEMGAYQC 215
           V  S    + C
Sbjct: 172 VAWSNKSDFAC 182

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} Length = 270

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 33/143 (23%)

Query: 88  ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----------LEVVIP 136
            R S      +  +L I+S    D   Y+C  + N       F           L+ V P
Sbjct: 89  KRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148

Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII--VRSNPP 187
           P++     S  E S          A LVC A G+     +++W   + KE+   V ++P 
Sbjct: 149 PEVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQ 201

Query: 188 SSQKVFSVE------SEVLSLTK 204
             ++  ++       S  L ++ 
Sbjct: 202 PLKEQPALNDSRYALSSRLRVSA 224

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* Length = 213

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 29/137 (21%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPMTKQM----AFLEV-----------VIPPDISSE 142
           N  TL I   +  D   Y CQ      +  +      + V           + PP  SSE
Sbjct: 68  NMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP--SSE 125

Query: 143 ETSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRRED--NKEIIVRSNPPSSQKVFSVESE 198
           E            A LVC     YP    +TW  +     + +  + P  S   +   S 
Sbjct: 126 ELK-------TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATS- 177

Query: 199 VLSLTKVTRSEMGAYQC 215
            L++T         + C
Sbjct: 178 YLTMTADAWKSRNTFIC 194

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E Length = 246

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 34/157 (21%)

Query: 89  RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF-----------LEVVIPP 137
           +  + H      TL + S   ED  +Y+C   T+    +  F           L+ V PP
Sbjct: 66  KFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPP 125

Query: 138 DI-----SSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPPS 188
           ++     S  E S          A LVC A G+ P   +++W   + KE+   V ++P  
Sbjct: 126 EVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQP 178

Query: 189 SQKVFSVE------SEVLSLTKVT-RSEMGAYQCIAA 218
            ++  ++       S  L ++    ++    ++C   
Sbjct: 179 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 215

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... Length = 238

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 33/155 (21%)

Query: 89  RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN------------PMTKQMAFLEVVIP 136
               +      ++L +          Y C                      +  L  V P
Sbjct: 61  GYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP 120

Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPP 187
           P +     S  E +          A LVC A+G +P   +++W   + KE+   V ++P 
Sbjct: 121 PKVSLFEPSKAEIA------NKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQ 173

Query: 188 SSQ---KVFSVESEVLSLTKVT-RSEMGAYQCIAA 218
           + +     + + S  L ++     +    ++C   
Sbjct: 174 AYKESNYSYCLSS-RLRVSATFWHNPRNHFRCQVQ 207

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 22/85 (25%), Gaps = 8/85 (9%)

Query: 142 EETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVL 200
           E   G +    G S  L C          + W               S    ++     L
Sbjct: 10  EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-------GSHPSRWAGMGRRL 62

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTV 225
            L  V   + G Y C  A     TV
Sbjct: 63  LLRSVQLHDSGNYSCYRAGRPAGTV 87

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 28/187 (14%)

Query: 57  FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
              +   +K  W     +   A  +             +      L +      +   Y 
Sbjct: 276 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS-----VLTVLHQDWLNGKEYK 330

Query: 117 CQVN----------TNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY- 165
           C+V+          T    K       V     S +E + +          L C  KG+ 
Sbjct: 331 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKN-------QVSLTCLVKGFY 383

Query: 166 PTP-KITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GV 221
           P+   + W      E   ++ PP       F + S  L++ K    +   + C   +  +
Sbjct: 384 PSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS-KLTVDKSRWQQGNVFSCSVMHEAL 442

Query: 222 PPTVSKR 228
               +++
Sbjct: 443 HNHYTQK 449

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ... Length = 211

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 31/138 (22%)

Query: 98  NTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEV-----------VIPPDISSEE 143
           NT +L +  ++ +D   Y C                L V           + PP  SSEE
Sbjct: 66  NTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPP--SSEE 123

Query: 144 TSGDMMVPEGGSAKLVCKA-KGYP-TPKITWRREDNKEII--VRSNPPSSQK--VFSVES 197
                       A LVC     YP    + W+  D+  +   V +  PS Q    ++  S
Sbjct: 124 LQ-------ANKATLVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASS 175

Query: 198 EVLSLTKVTRSEMGAYQC 215
             LSLT        +Y C
Sbjct: 176 -YLSLTPEQWKSHRSYSC 192

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
           T  +    TL +  +  ED G Y C+  T P
Sbjct: 86  TEAELQDATLALHGLTVEDEGNYTCEFATFP 116

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 54/228 (23%)

Query: 18  VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL 77
            T+   R    TCVV +                         +   +K  W     +   
Sbjct: 13  DTLMISRTPEVTCVVVD----------------------VSHEDPEVKFNWYVDGVEVHN 50

Query: 78  AIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN----PMTKQMAFLE- 132
           A      T                L +      +   Y C+V+      P+ K ++  + 
Sbjct: 51  AK-----TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG 105

Query: 133 -------VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR 183
                    +PP  S +E + +          L C  KG YP+   + W      E   +
Sbjct: 106 QPREPQVYTLPP--SRDELTKNQ-------VSLTCLVKGFYPSDIAVEWESNGQPENNYK 156

Query: 184 SNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPTVSKR 228
           + PP       F + S  L++ K    +   + C      +    +++
Sbjct: 157 TTPPVLDSDGSFFLYS-KLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 203

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... Length = 208

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 85  TNNARLSVTHNDANT-WTLNIRSVRREDRGYYMCQVNTNPM-TKQMAF---LEVVIPPDI 139
               R +   N A+   +L+IR  +  D   Y C  +      + + F     V + P I
Sbjct: 57  KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYI 116

Query: 140 SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN 185
            + + +   +     S K VC    +   +    +  + ++ +   
Sbjct: 117 QNPDPAVYQLRDSKSSDKSVCLFTDFD-SQTNVSQSKDSDVYITDK 161

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 34/135 (25%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
              +  LE+V +  G DA+F+  +                            S+ ++  W
Sbjct: 9   ARLVAGLEDVQVYDGEDAVFSLDL----------------------------STIIQGTW 40

Query: 69  IKADTKAVLA--IHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK 126
              + + + +      V     R  +         L + +V+ +D G  +         +
Sbjct: 41  FL-NGEELKSNEPEGQVEPGALRYRIEQ-KGLQHRLILHAVKHQDSGALVGFSCPG--VQ 96

Query: 127 QMAFLEVVIPPDISS 141
             A L +      SS
Sbjct: 97  DSAALTIQESSGPSS 111

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... Length = 213

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 37/153 (24%)

Query: 98  NTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAF-----LEV----------VIPPDISS 141
             +TL+I SV  ED G Y CQ  N+ P T    F     LE+          + PP  SS
Sbjct: 69  TDFTLSINSVETEDFGMYFCQQSNSWPYT----FGGGTKLEIKRADAAPTVSIFPP--SS 122

Query: 142 EETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDN--KEIIVRSNPPSSQK--VFSV 195
           E+ +        G A +VC     YP    + W+ + +  +  ++ S      K   +S+
Sbjct: 123 EQLT-------SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 175

Query: 196 ESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSK 227
            S  L+LTK       +Y C A +      + K
Sbjct: 176 SS-TLTLTKDEYERHNSYTCEATHKTSTSPIVK 207

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1 Length = 207

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 87  NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAF---LEVVIPPDISSE 142
           + RL VT +    + +L I + R  D   Y C  +T   T +  F     + +  +I + 
Sbjct: 58  SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNP 117

Query: 143 ETSGDMMVPEGGSAKLVCKAKGYP 166
           + +   +     S K VC    + 
Sbjct: 118 DPAVYQLRDSKSSDKSVCLFTDFD 141

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} Length = 268

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 32/156 (20%)

Query: 87  NARLSVTHNDANTWTLNIRSVRREDRGYYMCQ---------VNTNPMTKQMAFLEVVIPP 137
           N R      + +  TL I+   R D   Y+C                   +  L+ V PP
Sbjct: 87  NDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPP 146

Query: 138 DI-----SSEETSGDMMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEII--VRSNPPS 188
           ++     S  E S          A LVC A G+     +++W   + KE+   V ++P  
Sbjct: 147 EVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQP 199

Query: 189 SQKVFSVE------SEVLSLTKVT-RSEMGAYQCIA 217
            ++  ++       S  L ++    ++    ++C  
Sbjct: 200 LKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQV 235

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D Length = 245

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 34/157 (21%)

Query: 88  ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT-----------NPMTKQMAFLEVVIP 136
            + SV   D + +TL I+    ED   Y C  +                  +  L+ V P
Sbjct: 64  DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123

Query: 137 PDI-----SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEII--VRSNPP 187
           P++     S  E S          A LVC A G YP   +++W   + KE+   V ++P 
Sbjct: 124 PEVAVFEPSEAEIS------HTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQ 176

Query: 188 SSQKVFSVE------SEVLSLTKVT-RSEMGAYQCIA 217
             ++  ++       S  L ++    ++    ++C  
Sbjct: 177 PLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQV 213

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 18/182 (9%)

Query: 57  FPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYM 116
              D   ++++W   + +          T   R            L I+         + 
Sbjct: 267 VSEDDPDVQISWFVNNVEV-----HTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK 321

Query: 117 CQVNTNPMTKQMAFLEV-----VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP--K 169
           C+VN   +   +          V  P +       + M        L C    +      
Sbjct: 322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMT--KKQVTLTCMVTDFMPEDIY 379

Query: 170 ITWRREDNKEIIVRSNPPSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVS 226
           + W      E+  ++  P       + + S  L + K    E  +Y C   + G+    +
Sbjct: 380 VEWTNNGKTELNYKNTEPVLDSDGSYFMYS-KLRVEKKNWVERNSYSCSVVHEGLHNHHT 438

Query: 227 KR 228
            +
Sbjct: 439 TK 440

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 25/165 (15%), Positives = 40/165 (24%), Gaps = 45/165 (27%)

Query: 95  NDANTWTLNIRSV-RREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDM----- 148
              +   L ++     ED GYY+C    +     +     V   D + ++ +        
Sbjct: 39  PQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKD 98

Query: 149 -------------------MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS 189
                                   GS  L C         I W + D   I         
Sbjct: 99  DAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTD---KTIKWLK-DGSII--------- 145

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               +      +L    +   G YQC  A            L V+
Sbjct: 146 -SPLNATKNTWNLGNNAKDPRGTYQCQGAK------ETSNPLQVY 183

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 29/147 (19%)

Query: 88  ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEV---------V 134
            R S +     + +L I  +  ED   Y C    +            + V         V
Sbjct: 59  TRFSGS-KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTV 117

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEII--VRSNPPSSQ 190
                SSEE            A LVC    + P    + W+  D   +   V +  PS Q
Sbjct: 118 TLFPPSSEELQ-------ANKATLVCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQ 169

Query: 191 K--VFSVESEVLSLTKVTRSEMGAYQC 215
               ++  S  LSLT        +Y C
Sbjct: 170 SNNKYAASS-YLSLTPEQWKSHRSYSC 195

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGY----PTPKITWRREDNKEIIVRSNPPSS 189
           + PP    ++     ++    + K+ C         P  + +W  +D +    ++ P   
Sbjct: 6   IFPP--KPKD-----VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREE 58

Query: 190 QK--VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT 224
           Q    F   S  L +          ++C   +   P 
Sbjct: 59  QFNSTFRSVS-ELPIMHQDWLNGKEFKCRVNSAAFPA 94

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A Length = 206

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 13/134 (9%)

Query: 88  ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL-----EVVIPPDISSE 142
           A L++   D  + TL +      D   Y C +     T            + + P+I + 
Sbjct: 59  ASLAIA-EDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNP 117

Query: 143 ETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS 201
           + +   +     S K VC          ++  ++ +  I  ++             +  S
Sbjct: 118 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMR------SMDFKS 171

Query: 202 LTKVTRSEMGAYQC 215
            + V  S    + C
Sbjct: 172 NSAVAWSNKSDFAC 185

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE-MG 211
           G +  L C    YP  +I W+  ++K I          K    + + LSL + +  E  G
Sbjct: 21  GTTVILTCPQ--YPGSEILWQH-NDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 73

Query: 212 AYQCIAANGVPPTVSKRLML 231
            Y C      P   +  L L
Sbjct: 74  YYVCYPRGSKPEDANFYLYL 93

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ... Length = 229

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 87  NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETS 145
           N R S T + DA   TL+I +   +D   Y C V         +  ++++ P I + E +
Sbjct: 59  NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPA 118

Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
              +         +C    + +     +  ++   I          +     +  S   +
Sbjct: 119 VYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI-----TDKCVLDMKAMDSKSNGAI 173

Query: 206 TRSEMGAYQC 215
             S   ++ C
Sbjct: 174 AWSNQTSFTC 183

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 230

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 95  NDANTWTLNIRSVRREDRGYYMCQVNTN--------------------PMTKQMAFLEVV 134
             A+T  L I S+  ED   Y C                                  +  
Sbjct: 74  PSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPT 133

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQK- 191
           I     +E                +C  + + P   ++ W+ +D   I+      + +  
Sbjct: 134 IFLPSVAETNLHKTGT-------YLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTN 186

Query: 192 -VFSVESEVLSLTKVTRSEMG-AYQCIAA 218
             +   S    LT V    MG  ++CI  
Sbjct: 187 DTYMKFS---WLT-VPERAMGKEHRCIVK 211

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 56/225 (24%)

Query: 22  QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE 81
                  TCVV +                         D   ++++W   + +   A  +
Sbjct: 25  ISLTPKVTCVVVD----------------------VSEDDPDVQISWFVNNVEVHTAQTQ 62

Query: 82  -HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN----TNPMTKQMAFLEV--- 133
            H    N+ + V        TL I+         + C+VN     +P+ + ++ ++    
Sbjct: 63  THREDYNSTIRVVS------TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVR 116

Query: 134 -----VIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP 186
                ++PP   +E+ S            L C   G  P    + W    + E   +   
Sbjct: 117 APQVYILPP--PAEQLSRK-------DVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA 167

Query: 187 PSSQK--VFSVESEVLSLTKVTRSEMGAYQCIAAN-GVPPTVSKR 228
           P       + + S  L++      +  ++ C   + G+     K+
Sbjct: 168 PVLDSDGSYFIYS-KLNMKTSKWEKTDSFSCNVRHEGLKNYYLKK 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.96
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.96
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.95
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.95
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.95
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.95
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.94
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.94
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.94
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.94
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.94
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.94
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.94
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.93
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.93
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.93
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.93
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.93
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.93
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.93
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.93
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.93
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.93
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.92
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.92
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.92
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.92
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.92
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.92
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.92
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.92
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.92
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.92
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.92
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.92
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.92
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.92
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.92
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.92
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.92
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.92
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.92
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.92
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.91
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.91
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.91
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.91
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.91
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.91
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.91
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.91
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.91
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.91
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.91
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.91
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.9
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.9
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.9
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.9
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.9
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.9
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.9
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.9
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.9
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.9
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.89
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.89
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.89
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.89
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.89
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.89
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.89
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.89
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.89
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.89
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.89
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.89
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.89
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.89
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.89
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.89
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.89
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.89
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.89
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.89
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.89
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.89
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.89
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.89
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.89
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.88
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.88
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.88
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.88
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.88
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.88
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.88
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.88
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.88
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.88
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.88
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.88
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.88
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.88
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.88
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.88
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.88
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.88
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.88
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.88
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.87
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.87
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.87
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.87
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.87
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.87
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.87
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.87
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.87
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.87
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.87
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.87
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.87
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.87
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.87
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.86
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.86
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.86
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.86
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.86
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.86
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.86
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.86
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.86
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.86
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.86
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.86
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.86
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.85
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.85
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.85
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.85
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.85
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.85
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.85
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.85
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.85
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.85
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.85
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.85
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.85
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.85
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.85
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.84
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.84
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.84
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.84
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.84
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.84
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.84
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.84
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.84
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.84
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.84
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.84
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.84
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.84
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.84
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.83
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.83
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.83
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.83
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.83
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.83
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.83
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.83
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.82
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.82
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.82
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.81
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.81
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.81
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.81
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.81
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.81
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.81
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.81
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.81
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.8
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.8
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.8
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.8
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.8
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.8
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.8
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.79
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.79
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.79
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.78
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.78
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.78
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.78
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.78
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.78
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.77
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.77
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.77
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.76
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.76
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.75
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.75
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.74
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.74
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.74
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.74
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.74
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.73
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.73
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.73
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.73
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.71
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.7
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.7
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.69
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.69
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.67
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.67
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.66
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.66
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.65
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.64
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.64
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.64
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.61
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.61
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.6
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.59
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.58
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.58
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.57
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.57
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.57
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.57
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.57
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.56
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.56
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.55
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.54
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.54
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.54
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.54
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.53
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.52
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.52
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.52
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.52
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.52
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.52
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.51
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.51
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.51
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.51
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.51
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.51
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.51
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.51
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.5
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.5
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.5
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.5
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.5
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.49
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.49
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.49
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.49
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.48
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.48
1he7_A	126	High affinity nerve growth factor receptor; transf	99.48
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.48
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.48
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.48
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.48
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.48
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.47
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.47
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.47
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.47
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.47
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.46
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.46
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.46
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.46
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.46
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.45
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.45
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.45
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.45
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.18
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	99.45
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.45
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.45
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.45
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.45
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.45
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.45
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.44
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.44
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.44
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.44
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.43
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.43
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.43
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.43
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.43
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	99.43
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.43
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.43
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.43
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.42
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.42
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.41
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.41
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.41
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.41
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.41
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.41
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.41
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.4
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.4
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.4
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	99.4
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.39
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.39
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.39
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.39
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.39
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.39
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.39
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.38
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.38
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.38
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.37
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.37
2ens_A	96	Advanced glycosylation END product-specific recept	99.36
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.36
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.36
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.35
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.34
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.33
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.33
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.32
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	99.32
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.32
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.32
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.32
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	99.32
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.32
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.31
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.31
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.3
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.3
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.3
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.29
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.29
2ens_A	96	Advanced glycosylation END product-specific recept	99.29
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.29
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.28
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.28
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.28
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.28
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.28
1he7_A	126	High affinity nerve growth factor receptor; transf	99.27
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.27
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.27
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.27
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.27
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	99.26
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.26
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.26
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.26
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.26
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.26
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.26
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.25
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.25
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.25
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	99.25
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.25
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	99.25
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.24
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.24
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.24
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.23
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.23
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.22
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	99.22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.22
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.22
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.22
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.22
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.21
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.21
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.21
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	99.21
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.21
3khq_A	133	B-cell antigen receptor complex-associated protei	99.21
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.2
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.2
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.2
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.2
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.2
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.19
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	99.18
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.18
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.18
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	99.18
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.18
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.18
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.17
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	99.17
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	99.16
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.16
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	99.16
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.16
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.16
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.16
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.16
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.16
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	99.16
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.15
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	99.15
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.15
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	99.15
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.15
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.15
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.14
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.14
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.14
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.14
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.14
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.14
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	99.13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.13
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.13
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.13
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	99.13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.12
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	99.12
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.12
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	99.12
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	99.11
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.11
1xt5_A	135	Variable region-containing chitin-binding protein	99.11
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.1
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.1
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.1
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	99.1
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	99.1
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.1
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.09
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	99.09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.09
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.08
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.08
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.08
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.08
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.08
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.07
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	99.07

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.96  E-value=2.2e-27  Score=171.69  Aligned_cols=192  Identities=23%  Similarity=0.339  Sum_probs=135.4

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..        
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~v~W~k~~~~~~~--------   49 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATG--------------------------DPRPKIVWNKKGKKVSN--------   49 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC--------
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEee--------------------------CCCCEEEEEECCcCCCC--------
Confidence            46899999999999999999999999863                          23567999998765431        


Q ss_pred             cCccEEE-EEcCCCeEEEEEccc-CcccCeEEEEEEecCCC-cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941          86 NNARLSV-THNDANTWTLNIRSV-RREDRGYYMCQVNTNPM-TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        86 ~~~~~~~-~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~  157 (238)
                        .+... .........|.|.++ +.+|+|.|+|.+.+... ....+.|.|...+.     +.+...+....+..|+.+.
T Consensus        50 --~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  127 (212)
T 2yd6_A           50 --QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTAT  127 (212)
T ss_dssp             --TTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEE
T ss_pred             --CceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEE
Confidence              12221 122223458999999 59999999999987533 34455677765321     1111223445678899999


Q ss_pred             EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.|.+.|.|.|.+.|++ ++..+.....   ......   .....|.|.++..+|.|.|+|.|.|..|...+..+.|.|.
T Consensus       128 l~C~~~g~p~p~v~W~~-~g~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          128 MLCAASGNPDPEITWFK-DFLPVDTSNN---NGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEEEEECSSCCEEEEEE-TTEEC---------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEecCCCCCeEEEEE-CCccccCcCC---CceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            99999999999999999 5554432211   011111   1236899999999999999999999999877888889888


Q ss_pred             eec
Q psy7941         235 CTY  237 (238)
Q Consensus       235 ~~p  237 (238)
                      .+|
T Consensus       204 ~~~  206 (212)
T 2yd6_A          204 GTK  206 (212)
T ss_dssp             C--
T ss_pred             ecc
Confidence            765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.96  E-value=6.8e-27  Score=169.09  Aligned_cols=191  Identities=22%  Similarity=0.389  Sum_probs=141.5

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+.        .
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~--------~   49 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARG--------------------------DPPPSIVWRKNGKKVS--------G   49 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEEETTEECC--------T
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEcc--------------------------CCCCeEEEEECCEECC--------C
Confidence            35789999999999999999999999863                          3456799999876532        1


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCc-ccCeEEEEEEecCCC--cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRR-EDRGYYMCQVNTNPM--TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~  157 (238)
                      ...++.......+..+|.|.+++. +|+|.|+|.+.+...  ....+.|.|...+.     +.+...+....+..|+.+.
T Consensus        50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  129 (212)
T 2yd1_A           50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL  129 (212)
T ss_dssp             TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred             CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence            345666655555556999999999 999999999987543  34556677775422     1111223446778899999


Q ss_pred             EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.+.|.|.+.+.|++ ++..+...     ... ....++.|.|.++..+|.|.|+|.|.|..|...+..+.|.|..++
T Consensus       130 l~C~~~g~p~p~i~W~~-~~~~~~~~-----~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          130 MTCKAIGNPTPNIYWIK-NQTKVDMS-----NPR-YSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             ECCEEECSSCCEEEEEE-TTEECCTT-----STT-EEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEeccCCCCeEEEEE-CCeEcccC-----CCe-EEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            99999999999999999 55444221     111 233456899999999999999999999999665556888888654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.95  E-value=8e-27  Score=166.68  Aligned_cols=189  Identities=22%  Similarity=0.318  Sum_probs=138.9

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..        .
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~--------~   48 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTG--------------------------HPKPIVKWYRQGKEIIA--------D   48 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEEETTEECCC--------C
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEee--------------------------cCCCEEEEEECCEECcc--------C
Confidence            5789999999999999999999999863                          34567999998765431        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccc---cCCceeecCCCcEEEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEE---TSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~---~~~~~~~~~g~~~~l~C~~  162 (238)
                      ..++.+.....+..+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+....   ......+..|+.+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (197)
T 2j8h_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (197)
T ss_dssp             SSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE
Confidence            3456555555666799999999999999999997753 33455667777655543221   1234567889999999999


Q ss_pred             ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-eecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-VTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.|.|.+.|++ ++..+....   ............|.|.+ +..+|.|.|+|.|.|..|. .+.++.|.|.
T Consensus       129 ~g~p~p~i~W~~-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  196 (197)
T 2j8h_A          129 SGKPDPVITWQK-GQDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA  196 (197)
T ss_dssp             EEESCCEEEEEE-SSCEECSSS---SCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EecCCCcEEEEE-CCEEeecCC---CEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence            999999999999 444443111   11111112345788888 9999999999999999995 4788888775

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.95  E-value=1.8e-27  Score=169.36  Aligned_cols=185  Identities=26%  Similarity=0.456  Sum_probs=139.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|..++..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..        .
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~~~i~W~~~~~~~~~--------~   51 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVES--------------------------YPQPEISWTRNKILIKL--------F   51 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEE--------------------------ESCCEEEEEETTEECCT--------T
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCC--------------------------CCCCeEEEEECCEEccc--------c
Confidence            4688888899999999999999999863                          23557999998765321        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ..++.+.....   +|.|.+++.+|+|.|+|.+.+....  .....+.|..+|.+...  +....+..|+.+.|.|.+.|
T Consensus        52 ~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  126 (192)
T 2iep_A           52 DTRYSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP--PINVKIIEGLKAVLPCTTMG  126 (192)
T ss_dssp             CTTEEEEGGGT---EEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC--CCCEEEETTSCEEECCEEEE
T ss_pred             CccEEEcCCcc---EEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC--CcceEEeCCCcEEEEEEEec
Confidence            34554443221   7999999999999999999875332  34456777776665542  33467889999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.+.+.|++ ++..+...      ........+.|.|.++..+|.|.|+|.|.|..|...++.+.|.|..||
T Consensus       127 ~p~~~v~W~~-~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          127 NPKPSVSWIK-GDSALREN------SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             ESCCEEEEEE-TTEECCCC------SSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             cCCceEEEEe-CCEEccCC------CcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999999 55444321      122233445799999999999999999999999766788999999887

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.95  E-value=7e-27  Score=167.56  Aligned_cols=180  Identities=18%  Similarity=0.311  Sum_probs=117.4

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee----eeeEe----ecC
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI----HEHVI----TNN   87 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~----~~~   87 (238)
                      +.+.+..|+++.|+|.+....                       +.|.+.++|+|++.......    .....    ...
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~-----------------------~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~   57 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVS-----------------------LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFR   57 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTT-----------------------CSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGB
T ss_pred             CCeEEEcCCCEEEEeeeeccC-----------------------CCCCcEEEEEEcCCCcceEEEEecCCceEEeecccc
Confidence            357899999999999875432                       34578899999764322111    11111    112


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP  166 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  166 (238)
                      .++.... ..+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..||.+...  +....+.+|+.+.|.|.+.|.|
T Consensus        58 ~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~--~~~~~v~~g~~~~l~C~~~G~P  134 (203)
T 4fa8_A           58 GFFDIHR-SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFP  134 (203)
T ss_dssp             TTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE--EEECCSSCSCCEEEEEEEEEES
T ss_pred             ceEEEEE-cCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeec--ceeEEEcCCCEEEEEEEcCCCC
Confidence            3343332 3456799999999999999999998753 3445566777766655432  3445678899999999999999


Q ss_pred             CCeEEEEeCCCeeeEeecCCCCCcceEEEeece---EEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         167 TPKITWRREDNKEIIVRSNPPSSQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       167 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .|.+.|+++++.......   .........++.   +.+.++..+|+|.|+|.|.|..|++
T Consensus       135 ~P~v~W~~~~~~~~~~~~---~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          135 HPHVQWLMPEGVEPAPTA---ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             CCEEEECCC---------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             CCEEEEEECCeeecCccc---ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            999999985554322111   011122223333   4456899999999999999999954

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.95  E-value=4.6e-26  Score=161.93  Aligned_cols=175  Identities=19%  Similarity=0.369  Sum_probs=128.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEe-CCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK-ADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~   86 (238)
                      ++.|...+..+.+.+|+++.|.|.+....                         +.+.+.|++ ++..+..        .
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~-------------------------~~~~v~W~~~~g~~~~~--------~   48 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDA-------------------------KDKDISWFSPNGEKLSP--------N   48 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCS-------------------------CCCEEEEECTTSCEECC--------B
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCC-------------------------CCceEEEEeCCCccccC--------C
Confidence            56788889999999999999999996421                         256799999 4443221        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ..++..........+|.|.+++.+|+|.|+|.+.+...  ....+.+.|..+|.+...  +....+..|+.+.|.|.+.|
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  126 (191)
T 1epf_A           49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVS  126 (191)
T ss_dssp             SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEEC--CSSEECCTTSCEEECCEEEC
T ss_pred             CCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecC--CCcEeecCCCeEEEEEEECC
Confidence            45666555445566999999999999999999987642  334455666666655432  34567889999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.|.+.|++ ++..+....    ........++.|.|.++..+|.|.|+|.|.|..+
T Consensus       127 ~p~~~v~W~~-~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          127 SLPPTIIWKH-KGRDVILKK----DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             SSCCEEEEEE-TTEEGGGGC----CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CCCCEEEEEE-CCEEeeccC----CceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence            9999999999 554432211    1222333455799999999999999999999885

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=9e-26  Score=160.76  Aligned_cols=187  Identities=22%  Similarity=0.349  Sum_probs=132.9

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+...      
T Consensus         2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~------   49 (194)
T 2a38_A            2 TTQAPTFTQPLQSVVVLEGSTATFEAHISG--------------------------FPVPEVSWFRDGQVISTS------   49 (194)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEESSSBCCTT------
T ss_pred             CCCCCeEEccCCceEEECCCEEEEEEEEEe--------------------------cCCCEEEEEECCEEcccc------
Confidence            456899999999999999999999999853                          235579999977653211      


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                       ...++..... ....+|.|.+++.+|+|.|+|.+.+... ......+.|..   +|.+..  ......+..|+.+.|.|
T Consensus        50 -~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~--~~~~~~~~~g~~~~l~C  125 (194)
T 2a38_A           50 -TLPGVQISFS-DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ--RLQSMTVRQGSQVRLQV  125 (194)
T ss_dssp             -TSTTCEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEE--CCCCEEECTTEEEEEEE
T ss_pred             -cCCceEEEeC-CCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEe--CCccEEEcCCCEEEEEE
Confidence             0113333222 2345899999999999999999977533 33445566663   333322  23456788999999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .+.+.|.|.+.|++ ++..+....     .......+  ..|.|.++..+|.|.|+|.|.|..|. .+.++.|.|+
T Consensus       126 ~~~g~p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  194 (194)
T 2a38_A          126 RVTGIPTPVVKFYR-DGAEIQSSL-----DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLVQ  194 (194)
T ss_dssp             EEEEESCCEEEEEE-TTEECCCSS-----SEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             EEEEecCCeEEEEE-CCEECCCCC-----cEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEEC
Confidence            99999999999999 554443211     11111111  26999999999999999999999994 4777777763

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=1.9e-25  Score=157.53  Aligned_cols=177  Identities=25%  Similarity=0.389  Sum_probs=127.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+....        
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~~~--------   47 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEG--------------------------MEEPDIQWVKDGAVVQNLD--------   47 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEES--------------------------CSSCCEEEEETTEECCSSE--------
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeC--------------------------CCCCeEEEEECCeecCCCC--------
Confidence            578888999999999999999999963                          3456799999876543221        


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                       +...... .....+|.|.+++.+|+|.|+|.+.+...  ....+.|.|..+|.+...  +....+..|+.+.|.|.+.+
T Consensus        48 -~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g  124 (182)
T 1rhf_A           48 -QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVG  124 (182)
T ss_dssp             -EEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC--CCCEEECTTCCEEEEEEEEC
T ss_pred             -ceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec--CcceEecCCCEEEEEeEecC
Confidence             1111111 11134899999999999999999977533  345677888888876543  34467889999999999999


Q ss_pred             ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         165 YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       165 ~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.| .+.|++ ++..+...          ......|.|.++  +|+|.|+|.|.|..|...++++.|.|+
T Consensus       125 ~p~p~~v~W~~-~~~~~~~~----------~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          125 PPEPVTIVWWR-GTTKIGGP----------APSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             SSSCCEEEEEE-TTEECSCS----------EESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCCCCEEEEEc-CCeECCCC----------CCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            9999 999999 54443211          114456788777  589999999999999665668888773

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=159.35  Aligned_cols=189  Identities=17%  Similarity=0.306  Sum_probs=136.7

Q ss_pred             CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      +...+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+.       
T Consensus         3 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~-------   49 (197)
T 3lcy_A            3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVG--------------------------RPLPDIKWYRFGKELI-------   49 (197)
T ss_dssp             CCCEEEEEEECCCCEEEETTSEEEEEEEEEE--------------------------ESCCEEEEEETTEEEC-------
T ss_pred             ccCCCCcccccCCceEEeCCCcEEEEEEEec--------------------------CCCCEEEEEECCEECC-------
Confidence            3456899999999999999999999999853                          2356799999876542       


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccc-ccCCceeecCCCcEEEEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSE-ETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~-~~~~~~~~~~g~~~~l~C~  161 (238)
                        ...++.+... ....+|.|.+++.+|+|.|+|.+.+... ......+.|..+|.+... .......+..|+.+.|.|.
T Consensus        50 --~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~  126 (197)
T 3lcy_A           50 --QSRKYKMSSD-GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM  126 (197)
T ss_dssp             --CCSSEEEEES-SSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE
T ss_pred             --CCccEEEEeC-CCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE
Confidence              2334444332 3345899999999999999999986533 344556777665554321 2234456788999999999


Q ss_pred             EccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeec-CCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTR-SEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~-~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +.+.|.|.+.|++ ++..+....     ......  ....|.|.++.. +|.|.|+|.|.|..|.. +.++.|.|..
T Consensus       127 ~~~~p~p~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  196 (197)
T 3lcy_A          127 YIGRPVPAMTWFH-GQKLLQNSE-----NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD  196 (197)
T ss_dssp             EEEESCCEEEEEE-TTEECCCCS-----SEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             EeeeeCCeeEEeE-CCEECCCCC-----ceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEEEEEEEec
Confidence            9999999999999 555443211     111111  125789999985 89999999999999944 7888888764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=161.22  Aligned_cols=183  Identities=25%  Similarity=0.427  Sum_probs=129.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|...+....+.+|+++.|.|.+..                          .|.+.+.|++++......       ..
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~-------~~   48 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSS--------------------------SPAPAVSWLYHNEEVTTI-------SD   48 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEEC--------------------------SSCCEEEEEC-----CBC-------CC
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcC--------------------------CCCCEEEEEECCccceec-------cC
Confidence            688888999999999999999999863                          345679999987654321       23


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      .++.....    .+|.|.+++.+|+|.|+|.+.+....   .....+.+..+|.+..........+..|+.+.|.|.+.+
T Consensus        49 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g  124 (189)
T 2v5t_A           49 NRFAMLAN----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG  124 (189)
T ss_dssp             TTEEECTT----SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEE
T ss_pred             CeEEEecC----CCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEcc
Confidence            34443322    27999999999999999999765322   233456666666554433333456788999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.+.+.|++ ++..+....     .......+..|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus       125 ~p~~~v~W~~-~g~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  187 (189)
T 2v5t_A          125 SPEPAISWFR-NGKLIEENE-----KYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVF  187 (189)
T ss_dssp             ESCCEEEEEE-TTEECCCSS-----SEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CCCCeEEEEE-CCEECcCCC-----cEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce-eEEEEEEEE
Confidence            9999999999 555443211     11222234579999999999999999999999944 677777765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.94  E-value=2.1e-25  Score=158.46  Aligned_cols=182  Identities=25%  Similarity=0.401  Sum_probs=128.1

Q ss_pred             ccceeccCceeEEEe-cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQ-GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~-g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|..+ ..+.+.+ |+++.|.|.+.....                        +.+.+.|++++..+..         
T Consensus         3 ~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~------------------------~~~~v~W~~~~~~~~~---------   48 (190)
T 2wv3_A            3 EPRIVTS-EEVIIRDSLLPVTLQCNLTSSSH------------------------TLMYSYWTKNGVELTA---------   48 (190)
T ss_dssp             CCEEEEC-CCEECCCSSSCEEEEEEEEECSS------------------------CEEEEEEEETTEECTT---------
T ss_pred             CCccccc-ceEEEccCCceEEEEEEeccCCC------------------------CceEEEEEECCEECcc---------
Confidence            5666664 4455556 999999999964321                        1257999998765321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP  166 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  166 (238)
                      ....      .....|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.+...  +....+..|+.+.|.|.+.|.|
T Consensus        49 ~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p  120 (190)
T 2wv3_A           49 TRKN------ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGH--KRSENKNEGQDAMMYCKSVGYP  120 (190)
T ss_dssp             CCBC------CSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCEEEEE--CSEEEEETTSCEEEEEEEECSS
T ss_pred             cceE------eccEEEEEecCCcccCEEEEEEEEeCCcccccEEEEEecCCccccc--CCcceeeCCCcEEEEEEeCccC
Confidence            1111      1234999999999999999999987744455677888888876543  3446688999999999999999


Q ss_pred             CCeEEEEeC-CCeeeEeecCCCCCcceEEEe--eceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         167 TPKITWRRE-DNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       167 ~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.+.|+++ ++..+.....  .........  ...|.|.++. .+|.|.|+|.|.|..|. ...++.|.|.
T Consensus       121 ~p~i~W~~~~~g~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  189 (190)
T 2wv3_A          121 HPEWMWRKKENGVFEEISNS--SGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVLRVR  189 (190)
T ss_dssp             CCEEEEEEEETTEEEECCCT--TSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             CCceEEEEcCCCceeeeecC--CCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence            999999995 3333322111  111111111  2379999999 79999999999999994 4777777775

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=161.90  Aligned_cols=181  Identities=19%  Similarity=0.266  Sum_probs=122.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      ..|.|..+. .+.+.+|+.+.|.|.+..                         +.|.+.+.|++++..+.         .
T Consensus         2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~-------------------------~~P~p~i~W~kng~~l~---------~   46 (207)
T 3rbs_A            2 IDPFTKSEL-AVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIF---------E   46 (207)
T ss_dssp             ----CCEEE-EEEECGGGCEEEEEECSC-------------------------CCSCCEEEEEETTEEEC---------S
T ss_pred             CCCeeecCC-ceEEEeCCeEEEEEEEec-------------------------CCCCCEEEEEECCEECc---------c
Confidence            456766654 688999999999999842                         34678899999887643         2


Q ss_pred             CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE---------------------cCCccccccc
Q psy7941          87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV---------------------IPPDISSEET  144 (238)
Q Consensus        87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~  144 (238)
                      +.++.+.... .+..+|.|.+++.+|+|.|+|.+.|+ .......+.+.                     .+|.+...  
T Consensus        47 ~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~--  123 (207)
T 3rbs_A           47 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG-KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY--  123 (207)
T ss_dssp             SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET-TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE--
T ss_pred             CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC-CeEEEEEEEEEccchhhhcccccccccccccCCCCceEec--
Confidence            3344443322 35568999999999999999999873 22322222211                     12332221  


Q ss_pred             CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      . ...+.+|+.+.|.|.+.|. |.|.+.|++ ++..+.....     .........|.|.++..+|+|.|+|.|.|..|.
T Consensus       124 ~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k-~g~~l~~~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  196 (207)
T 3rbs_A          124 L-SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEK-----HDFKDGICTLLITEFSKKDAGIYEVILKDDRGK  196 (207)
T ss_dssp             E-EEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCCCC-----CCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             C-CcEEcCCCcEEEEEEEeCCCCCCEEEEEE-CCEECCCCCc-----eEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE
Confidence            1 2567889999999999998 999999999 5655533211     111122346999999999999999999999994


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                      . +.++.|.+
T Consensus       197 ~-~~~~~L~~  205 (207)
T 3rbs_A          197 D-KSRLKLVD  205 (207)
T ss_dssp             E-EEEEEECC
T ss_pred             E-EEEEEEec
Confidence            4 66666643

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=158.33  Aligned_cols=181  Identities=22%  Similarity=0.352  Sum_probs=131.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|...+..+.+.+|+++.|.|.+..                         +.|.+.+.|++++..+.....       
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~~~g~~l~~~~~-------   49 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQV-------------------------QGEPPEVHWLRDGQILELADS-------   49 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEE-------------------------ESSCCCCEEEETTEECCSCEE-------
T ss_pred             CCeeccChhheEEecCCcEEEeccccc-------------------------CCCCcEEEEEECCEEcccCCC-------
Confidence            688999999999999999999999961                         234567999998765433211       


Q ss_pred             ccEEEEEcCC--C----eEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941          88 ARLSVTHNDA--N----TWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        88 ~~~~~~~~~~--~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      .++.+.....  .    ..+|.|.+++.+|+|.|+|.+.+....  ...+.|.|..+|.+...  +....+.+|+.+.|.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~  127 (195)
T 2c5d_C           50 TQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE--PEDRTVAANTPFNLS  127 (195)
T ss_dssp             EEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC--CCCEEECTTCCEEEE
T ss_pred             CceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC--CCcEEEcCCCEEEEE
Confidence            1122211111  0    238999999999999999999875332  23467888777766542  344678899999999


Q ss_pred             EEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         160 CKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       160 C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      |.+.|.|.| .+.|+++ +..+.....     .   .....|.|.++.  |+|.|+|.|.|..|...++.+.|.|
T Consensus       128 C~~~g~p~p~~v~W~~~-~~~~~~~~~-----~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          128 CQAQGPPEPVDLLWLQD-AVPLATAPG-----H---GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEECSSCCCEEEEEES-SCBSSSSTT-----S---SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eECCCCCCCCEEEEEEC-CEeccCCCC-----c---CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            999999999 9999994 443322110     0   344568888776  7899999999999966457888888

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.94  E-value=8.3e-25  Score=164.83  Aligned_cols=190  Identities=25%  Similarity=0.376  Sum_probs=140.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+.         
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~---------   47 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTG--------------------------TAPIKITWAKDNREIR---------   47 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEES--------------------------SSCCEEEEEETTEECC---------
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEc--------------------------CCCCEEEEEECCEECc---------
Confidence            35788999999999999999999999963                          3456799999876542         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ...++..... ....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+... ......+.+|+.+.|.|.+.|
T Consensus        48 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g  125 (284)
T 2rik_A           48 PGGNYKMTLV-ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYECKIGG  125 (284)
T ss_dssp             SSSSEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEC-CCSEEEEETTCCEEEEEEEES
T ss_pred             CCCcEEEEEc-CCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCccccc-CCCceEecCCceEEEEEEEee
Confidence            1233333322 234589999999999999999997753 3445667888887775532 233456789999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.+.+.|++ ++..+....   ............|.|.++..+|.|.|+|.+.|..|. .+..+.|.|..+|
T Consensus       126 ~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p  193 (284)
T 2rik_A          126 SPEIKVLWYK-DETEIQESS---KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPP  193 (284)
T ss_dssp             SSCCEEEEEE-TTEECCCSS---SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCC
T ss_pred             eCCCEEEEEE-CCEECcCCC---cEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCC
Confidence            9999999999 444432211   001111122357999999999999999999999984 4788889998876

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=9.1e-25  Score=157.55  Aligned_cols=193  Identities=21%  Similarity=0.320  Sum_probs=135.0

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-e--eEee
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-E--HVIT   85 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~--~~~~   85 (238)
                      +.|..++..+.+.+|+++.|.|.+..                          .|.+.+.|++++........ .  ....
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~~~~~~~~   55 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSG--------------------------FSSPRVEWKFVQGSTTALVCYNSQITAP   55 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEES--------------------------CSSEEEEEEEEETTEEEEEEETTEECGG
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCC--------------------------CCCcEEEEEECCCceeeEEecCCccccc
Confidence            46778889999999999999999963                          24667999997665321111 0  0011


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE-
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK-  161 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~-  161 (238)
                      ...++....     .+|.|.+++.+|+|.|+|.+.+...   ....+.|.|..+|.+.....  ...+.+|+.+.|.|. 
T Consensus        56 ~~~r~~~~~-----~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~  128 (212)
T 1f97_A           56 YADRVTFSS-----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSE  128 (212)
T ss_dssp             GTTTEEEET-----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC--CSEEETTSCEEEEEEC
T ss_pred             ccCcEEeec-----eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC--ccccCCCCeEEEEEEc
Confidence            234555443     3999999999999999999977532   34556788888777654322  246788999999999 


Q ss_pred             EccccCCeEEEEeCCCe-eeEeecCC--CC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEe
Q psy7941         162 AKGYPTPKITWRREDNK-EIIVRSNP--PS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHC  235 (238)
Q Consensus       162 ~~~~p~~~~~W~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~  235 (238)
                      +.+.|.|.+.|++ ++. .+......  ..  ...........|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|..
T Consensus       129 ~~~~p~~~i~W~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          129 HDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccCcCCCEEEEEe-CCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            6889999999999 444 44322110  00  011111235689999999999999999999999955 46778777764

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.93  E-value=9.5e-25  Score=165.00  Aligned_cols=191  Identities=19%  Similarity=0.347  Sum_probs=137.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...|....+.+|+++.|.|.+....                         +.+.+.|++.++....       ...
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~-------------------------~~~~i~W~~~~g~~~~-------~~~   49 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDA-------------------------KDKDISWFSPNGEKLS-------PNQ   49 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCC-------------------------SCCEEEEECTTSCBCC-------SSC
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCC-------------------------CCcEeEEECCCCeECc-------cCC
Confidence            57888899999999999999999986321                         2467999994433221       123


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      .++.+........+|.|.+++.+|+|.|+|.+.+....  ...+.+.|..+|.+..  .+....+.+|+.+.|.|.+.+.
T Consensus        50 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~  127 (291)
T 1qz1_A           50 QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN--APTPQEFKEGEDAVIVCDVVSS  127 (291)
T ss_dssp             SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEE--CCSSEEEETTSCEEECCEEECS
T ss_pred             ceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccC--CCCcccccCCCeEEEEEEeccC
Confidence            45555544455669999999999999999999876433  3344566666655443  2445678899999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCCccceEEEEEEeec
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~~~~~~~l~V~~~p  237 (238)
                      |.+.+.|++++ ..+...    .........++.|.|.++..+|.|.|+|.+.|.. +......+.|.|..+|
T Consensus       128 p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p  195 (291)
T 1qz1_A          128 LPPTIIWKHKG-RDVILK----KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP  195 (291)
T ss_dssp             SCCEEEEEETT-SCSSTT----CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEECC-EEcccC----CCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCC
Confidence            99999999954 332211    1122233345689999999999999999999976 4333567778887766

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.93  E-value=8.4e-26  Score=163.07  Aligned_cols=197  Identities=21%  Similarity=0.369  Sum_probs=133.6

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.+...+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+......
T Consensus         3 l~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~   56 (212)
T 2v9r_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEG--------------------------RPTPTIEWYKGGERVETDKDD   56 (212)
T ss_dssp             ---CCEEEEEEECCCCEEECTTCCEEECCEEEE--------------------------ESCCEEEEEETTEECCCTTTC
T ss_pred             cCcccCCcceecCCCceEEeCCCcEEEEEEcCC--------------------------CCCCEEEEEECCEEeeccccc
Confidence            456678899999999999999999999999853                          235679999987654321100


Q ss_pred             eEeecCccEEEEEcCCC--eEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941          82 HVITNNARLSVTHNDAN--TWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                           ............  ...|.|.+++.+|+|.|+|.+.+....  ...+.+.|...+.... ..+....+..|+.+.
T Consensus        57 -----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~-~~~~~~~~~~g~~~~  130 (212)
T 2v9r_A           57 -----PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR-QNPSDVMVAVGEPAV  130 (212)
T ss_dssp             -----TTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCS-BCCCCEEEETTSCEE
T ss_pred             -----cccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccce-eCCCceEecCCCcEE
Confidence                 000011111111  114556778999999999999875432  3345666665333221 223456788999999


Q ss_pred             EEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         158 LVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       158 l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |.|.+ .+.|.+.+.|++ ++..+....     .. ....++.|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+
T Consensus       131 l~C~~~~~~p~~~v~W~~-~~~~l~~~~-----~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~  203 (212)
T 2v9r_A          131 MECQPPRGHPEPTISWKK-DGSPLDDKD-----ER-ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER  203 (212)
T ss_dssp             EECBCCCEESCCEEEEEE-TTEEECTTS-----TT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEecCCCCCCCEEEEEE-CCccCCCCc-----ce-EEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence            99998 889999999999 555443211     11 23345689999999999999999999999966566789999987


Q ss_pred             c
Q psy7941         237 Y  237 (238)
Q Consensus       237 p  237 (238)
                      |
T Consensus       204 P  204 (212)
T 2v9r_A          204 P  204 (212)
T ss_dssp             -
T ss_pred             c
Confidence            7

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=7.2e-25  Score=166.79  Aligned_cols=192  Identities=22%  Similarity=0.301  Sum_probs=139.6

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..        .
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~v~W~~~~~~~~~--------~   48 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTG--------------------------HPKPIVKWYRQGKEIIA--------D   48 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEEC--------------------------SSCCEEEEEETTEECCC--------C
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeC--------------------------CCCCeEEEEECCEEccc--------C
Confidence            5789999999999999999999999853                          34667999998765431        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccc---ccCCceeecCCCcEEEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSE---ETSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~---~~~~~~~~~~g~~~~l~C~~  162 (238)
                      ..++.......+..+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|.+...   .......+..|+.+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (305)
T 2nzi_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (305)
T ss_dssp             SSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE
Confidence            34555554445566999999999999999999977533 344566777665543221   11244667889999999999


Q ss_pred             ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE-eecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK-VTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.|.+.+.|+++ +..+....   ............|.|.+ +..+|.|.|+|.|.|..|. ...++.|.|..+|
T Consensus       129 ~g~p~p~i~W~~~-~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P  199 (305)
T 2nzi_A          129 SGKPDPVITWQKG-QDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVP  199 (305)
T ss_dssp             EEESCCEEEEEES-SSBCCSSS---SCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCC
T ss_pred             CCCCCCEEEEEEC-CEECCCCC---cEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCC
Confidence            9999999999994 44332111   00111111234788888 9999999999999999995 4778888887655

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.93  E-value=9.8e-25  Score=156.79  Aligned_cols=169  Identities=16%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..|.+...+....+.+|+++.|.|.+..                          .|.+ .+.|++++..+..        
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~~v~W~k~g~~l~~--------   51 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAY--------------------------SPEDQSTQWFHNESLISS--------   51 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCS--------------------------SSSCCCEEEEETTEEESC--------
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCC--------------------------CCCCcEEEEEECCEEccc--------
Confidence            4677778888889999999999999863                          2233 4999998664321        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                       ..           .+|.|.+++.+|+|.|+|.+.+. ..+..+.|.|..++.+...   ....+.+|+.+.|.|.+.+.
T Consensus        52 -~~-----------~~L~i~~v~~~D~G~Y~C~a~n~-~~s~~~~l~V~~~p~~~~~---~~~~v~~G~~v~L~C~~~~~  115 (204)
T 3sgj_C           52 -QA-----------SSYFIDAATVDDSGEYRCQTQLS-TLSDPVQLEVHIGWLLLQA---PRWVFKEEDPIHLRCHSWKN  115 (204)
T ss_dssp             -CS-----------SEEEESSCCGGGCEEEEEEETTS-BCCCCEEEEEECSSEEEEC---SCSEEETTCCEEEEEEEGGG
T ss_pred             -Cc-----------cEEEEecccccCCEEEEEEeCCC-cccccEEEEEecCceEecC---CceeEeCCCcEEEEEEecCC
Confidence             11           29999999999999999999763 3455677888876654332   22567889999999999664


Q ss_pred             -cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         166 -PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       166 -p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                       |.+.+.|++ ++..+..           ......|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|
T Consensus       116 ~p~~~v~W~k-~g~~~~~-----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          116 TALHKVTYLQ-NGKGRKY-----------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             CCCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCCceEEEEE-CCcEeec-----------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence             668999999 5544321           22355799999999999999999999655466888899998654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.93  E-value=7.8e-24  Score=153.88  Aligned_cols=198  Identities=17%  Similarity=0.270  Sum_probs=126.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe------e
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI------T   85 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~------~   85 (238)
                      ..++..+.+.+|+++.|.|.+......                     +...+.+.|++++............      .
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~---------------------~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~   63 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQL---------------------DLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS   63 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSC---------------------CTTTCEEEEEETTEEEEEEETTEECSSSSCGG
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCC---------------------CCccEEEEEEECCcEEEEEeCCcccccccccc
Confidence            445677889999999999998532111                     1113479999986333222111111      1


Q ss_pred             cCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          86 NNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        86 ~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                      ..+|+.+...  ..+..+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..++......  ....+..|+.+.|.|.+.
T Consensus        64 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~~g~~v~L~C~~~  141 (222)
T 3sbw_C           64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAE  141 (222)
T ss_dssp             GSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEE--EEEEETTTTEEEEEEEEE
T ss_pred             ccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCce--eeeeecCCCcEEEEEEec
Confidence            1245444332  335669999999999999999999885444556678887665543211  112567899999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |+|.|.+.|+++++..+......    ......++   ......+..+|.|.|+|.|.|..| ....++.|.|..+|
T Consensus       142 g~P~p~i~W~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g-~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          142 GYPKAEVIWTSSDHQVLSGKTTT----TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP-EENHTAELVIPELP  213 (222)
T ss_dssp             EBSCCEEEEEETTCCEECCEEEE----EECC----CEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCCC-
T ss_pred             CCCCCeEEEEECCCceecCccce----EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCcc-ceeeEEEEEecCCc
Confidence            99999999999656544321100    00001111   122234567899999999999999 44788888887655

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.93  E-value=2.1e-24  Score=151.35  Aligned_cols=168  Identities=15%  Similarity=0.205  Sum_probs=126.3

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.+...+..+.+.+|+++.|.|.+...                          |.+ .+.|++++..+.         
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~--------------------------p~~~~~~W~~~~~~~~---------   50 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYS--------------------------PEDNSTQWFHNESLIS---------   50 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCB--------------------------TTBCCCEEEETTEEEE---------
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCC--------------------------CCCcceEEEECCEEcc---------
Confidence            56788888888899999999999998542                          223 378999765432         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      .           ...+|.|.+++.+|+|.|+|.+.+.. ......+.|..++....   .....+.+|+.+.|.|.+.+.
T Consensus        51 ~-----------~~~~L~i~~~~~~d~G~Y~C~~~n~~-~s~~~~l~V~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~  115 (175)
T 1fnl_A           51 S-----------QASSYFIDAATVNDSGEYRCQTNLST-LSDPVQLEVHIGWLLLQ---APRWVFKEEDPIHLRCHSWKN  115 (175)
T ss_dssp             S-----------SCSEEEESSCCGGGCEEEEEECSSSC-CCCCEEEEEECSSEEEE---CSCSEEETTCCEEEEEEECTT
T ss_pred             C-----------CceEEEEeCCCcccCEEEEEEeeCCc-ccccEEEEEeCCCceee---CCCceecCCCCEEEEEEcCCC
Confidence            1           11289999999999999999997643 35566777775443322   123557889999999999886


Q ss_pred             cC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         166 PT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       166 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |+ +.+.|++ ++..+..           ......|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+
T Consensus       116 ~~~~~~~W~k-~g~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          116 TALHKVTYLQ-NGKDRKY-----------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             CCCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             CCceEEEEEE-CCeEccC-----------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            55 5999999 5554421           2245689999999999999999999987766688888888753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.93  E-value=8.6e-25  Score=157.39  Aligned_cols=188  Identities=17%  Similarity=0.251  Sum_probs=124.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eeee--e--eE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAIH--E--HV   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~~--~--~~   83 (238)
                      ...+..+.+.+|+++.|.|....                          .+.+.+.|++++....    ....  .  ..
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~   56 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLP--------------------------LALGAFAWYKGNTTAIDKEIARFVPNSNMNF   56 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCC--------------------------SSCSEEEEEESSCCCGGGEEEEEEGGGTEEE
T ss_pred             cccCccceeecCCcEEEEEeCCC--------------------------CCceEEEeccCCCCCccceEEEEecCCCccc
Confidence            34455577899999999999532                          3356799999753211    1000  0  00


Q ss_pred             e--ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941          84 I--TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        84 ~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      .  ...+|+.+..    +.+|.|.+++.+|+|.|+|.+.+...  ......|.|..++........... +..|+.+.|.
T Consensus        57 ~~~~~~~r~~~~~----~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~  131 (208)
T 3r4d_A           57 TGQAYSGREIIYS----NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLT  131 (208)
T ss_dssp             ECTTCCSSEEECT----TSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEE
T ss_pred             cCccccceeEEec----CCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEE
Confidence            0  0123444332    22799999999999999999987632  334455677655332211112222 7889999999


Q ss_pred             EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.+.+.| |.+.|++ ++..+...     ........+..|.|.++..+|.|.|+|.|.|..|...+..++|.|..+|
T Consensus       132 C~~~~~p-p~i~W~~-~g~~l~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          132 CLSNDIG-ANIQWLF-NSQSLQLT-----ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             EECSCTT-CEEEEEE-TTEECCCC-----SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC---
T ss_pred             EECCCCC-CceEEEE-CCEeCCCC-----CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCC
Confidence            9999866 7999999 55544321     1112222336899999999999999999999999888999999998876

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.7e-25  Score=160.88  Aligned_cols=198  Identities=20%  Similarity=0.328  Sum_probs=126.9

Q ss_pred             CCccccceecc----CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee
Q psy7941           4 VRGFEPDFLYP----LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI   79 (238)
Q Consensus         4 ~~~~~p~~~~~----~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~   79 (238)
                      +...+|.|..+    +..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+....
T Consensus         7 v~~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~   60 (241)
T 3grw_A            7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG--------------------------NPTPSISWLKNGREFRGEH   60 (241)
T ss_dssp             ----CCEESSGGGGSCCEEEEETTSEEEEECCEEC--------------------------SSCCEEEEEETTEECCGGG
T ss_pred             ccCCCceeEcCCCCCCcceEEcCCCeEEEEEEecC--------------------------CCCceeEEEECCcccCCCC
Confidence            44557777655    45788999999999999863                          3456799999876542110


Q ss_pred             eeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc---ccccccCCceeecCCCc
Q psy7941          80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD---ISSEETSGDMMVPEGGS  155 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~  155 (238)
                      .      .......   ....+|.|.+++.+|+|.|+|.+.+.. .......+.|...+.   ......+....+..|+.
T Consensus        61 ~------~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~  131 (241)
T 3grw_A           61 R------IGGIKLR---HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD  131 (241)
T ss_dssp             S------TTCCEEE---GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCC
T ss_pred             c------ccceeee---ccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCE
Confidence            0      0011111   122389999999999999999997753 334455667764221   11222244567888999


Q ss_pred             EEEEEEEccccCCeEEEEeC---CCeeeEeecCCCCCc-----ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         156 AKLVCKAKGYPTPKITWRRE---DNKEIIVRSNPPSSQ-----KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       156 ~~l~C~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      +.|.|.+.+.|.+.+.|+++   ++..+..........     .........|.|.++..+|.|.|+|.|.|..|.. +.
T Consensus       132 v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~  210 (241)
T 3grw_A          132 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA-EK  210 (241)
T ss_dssp             EEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             EEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE-EE
Confidence            99999999999999999983   222221110000000     0001134579999999999999999999999944 88


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      ++.|.|..+|
T Consensus       211 ~~~l~V~~~p  220 (241)
T 3grw_A          211 AFWLSVHGPR  220 (241)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEecCCC
Confidence            8999998876

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.93  E-value=3.6e-25  Score=159.84  Aligned_cols=196  Identities=19%  Similarity=0.339  Sum_probs=131.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-------eeeeeeeeE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-------AVLAIHEHV   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~~~~~~~~~   83 (238)
                      +..++..+.+.+|+++.|.|.+......                      ...+.+.|++.+..       .........
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~   60 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPED----------------------QGPLDIEWLISPSDNQIVDQVIILYSGDKI   60 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTC----------------------CSCCEEEEEEEESSSSCCSEEEEEEETTEE
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCC----------------------CCcEEEEEEecCCCCCCCceEEEEEeCCeE
Confidence            3456678899999999999998643211                      01357999985321       111111111


Q ss_pred             ee-----cCccEEEEE--cCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941          84 IT-----NNARLSVTH--NDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        84 ~~-----~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~  155 (238)
                      ..     ..+|+.+..  ......+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+....  ....+..|+.
T Consensus        61 ~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~  138 (214)
T 3jz7_A           61 YDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF--VDGSEEIGND  138 (214)
T ss_dssp             ECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE--EESCCBTTCC
T ss_pred             ccccCCccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee--eecceecCCc
Confidence            11     144555433  12245589999999999999999997753 34556678888877754332  2234778999


Q ss_pred             EEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         156 AKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       156 ~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      +.|.|.+ .+.|.+.+.|+++++......      .......++.|.|.++..+|.|.|+|.|.|..|.. +.++.|.|.
T Consensus       139 v~l~C~~~~g~p~~~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  211 (214)
T 3jz7_A          139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPT------PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVV  211 (214)
T ss_dssp             EEEEEECSBCCSSCEEEEEECSTTCCCCG------GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             EEEEecCCCCCCCCEEEEEECCCCCccCc------cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEe
Confidence            9999999 889999999999543221111      01112234489999999999999999999999954 888888888


Q ss_pred             eec
Q psy7941         235 CTY  237 (238)
Q Consensus       235 ~~p  237 (238)
                      .||
T Consensus       212 ~P~  214 (214)
T 3jz7_A          212 PPS  214 (214)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            665

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=158.36  Aligned_cols=172  Identities=20%  Similarity=0.319  Sum_probs=130.0

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      +..+.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..        
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~~~--------   61 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRAT--------------------------GHPFVQYQWFKMNKEIPN--------   61 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEET--------------------------TTTSSEEEEEETTEECTT--------
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeec--------------------------CCCCCEEEEEECCEECCC--------
Confidence            3568889999999999999999999984                          234668999998765321        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc-------------ccccccCCceee
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD-------------ISSEETSGDMMV  150 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~-------------~~~~~~~~~~~~  150 (238)
                       .          ...+|.|.+++.+|+|.|+|.+.+....  ...+.+.|...+.             +.....+....+
T Consensus        62 -~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v  130 (218)
T 3k0w_A           62 -G----------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL  130 (218)
T ss_dssp             -C----------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEE
T ss_pred             -C----------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceee
Confidence             0          1228999999999999999999876332  4446777775531             111223345678


Q ss_pred             cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      ..|+.+.|.|.+.+.|.+.+.|++ ++..+..            .....|.|.++..+|.|.|+|.|.|..|...+..+.
T Consensus       131 ~~G~~v~L~C~~~g~p~~~v~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~  197 (218)
T 3k0w_A          131 MPGSTLVLQCVAVGSPIPHYQWFK-NELPLTH------------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE  197 (218)
T ss_dssp             CTTCCEEEECEEEBSSCCEEEEEE-TTEECTT------------CCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred             cCCCcEEEEEEecccCCCeEEEEE-CCEECCC------------CCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEE
Confidence            899999999999999999999999 5544321            123479999999999999999999999876788888


Q ss_pred             EEEEe
Q psy7941         231 LHVHC  235 (238)
Q Consensus       231 l~V~~  235 (238)
                      |.|..
T Consensus       198 l~V~~  202 (218)
T 3k0w_A          198 IIIDE  202 (218)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            88865

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=176.09  Aligned_cols=182  Identities=18%  Similarity=0.219  Sum_probs=129.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--eEeecCccEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--HVITNNARLS   91 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~   91 (238)
                      ++..+.+.+|+++.|.|.+..                         +.|.+.++|++++..+......  ..+. ..+..
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~-------------------------g~p~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~  286 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVH-------------------------VNHGFGLTWELENKALEEGNYFEMSTYS-TNRTM  286 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEE-------------------------SSSCCCEEEECSSSCCCGGGEEEEEEEE-TTTEE
T ss_pred             CCCceEEeCCCeEEEEEEEcc-------------------------CCCCeEEEEEECCEECCCCceeeeeeec-cCcce
Confidence            566888999999999999952                         3456789999987654321100  0011 11111


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT  171 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  171 (238)
                      .     ...+|.|.+++.+|+|.|+|.+.|.  ....+.|.|..+|.+..........+.+|+.+.|.|.+.|+|.|.+.
T Consensus       287 ~-----~~~~L~I~~v~~~DsG~Y~C~a~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~  359 (527)
T 3qs9_E          287 I-----RILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT  359 (527)
T ss_dssp             E-----EEEEEEESSCCGGGCEEEEEEETTE--EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred             e-----eEEEEEEccCCcccCeEEEEEEEeC--CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEE
Confidence            1     1227999999999999999999776  55667788877776554333344667889999999999999999999


Q ss_pred             EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |++ ++..+.....       ....+..|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus       360 W~k-~g~~l~~~~~-------~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L~V~~~P  416 (527)
T 3qs9_E          360 WTF-SRKSFPCEQK-------GLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRRKP  416 (527)
T ss_dssp             EEE-TTEEEECBCC-------BCSSSSEEEEECCCTTCCSCEEEEEEETTEEE-EEEEEEC--CCC
T ss_pred             EEE-CCEECcCCcc-------cccCCcEEEEecCCcccCEEEEEEEEeCCCcE-EEEEEEEEecCC
Confidence            999 6665543221       11245579999999999999999999999944 778899998877

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=163.50  Aligned_cols=188  Identities=22%  Similarity=0.354  Sum_probs=130.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+.         
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g--------------------------~p~~~i~W~k~g~~i~---------   48 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATG--------------------------DPKPRVTWNKKGKKVN---------   48 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEEC--------------------------SSCCEEEEC----------------
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEE--------------------------eCCCeEEEEECCEECC---------
Confidence            46899999999999999999999999853                          3466799999876542         


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCc-ccCeEEEEEEecCCC-cceeeEEEEEcCCc-----ccccccCCceeecCCCcEE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRR-EDRGYYMCQVNTNPM-TKQMAFLEVVIPPD-----ISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~~  157 (238)
                       ..++.... .......|.|.+++. +|+|.|+|.+.+... ....+.|.|..++.     +.+...+....+..|+.+.
T Consensus        49 -~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~  127 (304)
T 2yd9_A           49 -SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT  127 (304)
T ss_dssp             -CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEE
T ss_pred             -CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEE
Confidence             23343332 222345899999998 999999999987533 44566777775422     1112224456788899999


Q ss_pred             EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      |.|.+.|.|.+.+.|++ ++..+....   .........++.|.|.++..+|.|.|+|.|.|..|...+....+.|
T Consensus       128 l~C~~~g~p~~~v~W~k-~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          128 MLCAASGNPDPEITWFK-DFLPVDPSA---SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             ECCEEECSSCCEEEEEE-TTEECCGGG---GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEECccCCCCeEEEEE-CCEECcCCC---CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence            99999999999999999 554443211   1112223345589999999999999999999999855444345555

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.93  E-value=6.1e-24  Score=160.57  Aligned_cols=200  Identities=22%  Similarity=0.395  Sum_probs=136.6

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeee--------------eecCCeEEeccC---CCCceEEEEeCCceeeeeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------------VNTGGSIVFPTD---SSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      +...|.+.|.|.+.+..+...+..+.+.+              +..|+.+.+.|.   .|.+.+.|++++..+...    
T Consensus        67 ~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----  142 (291)
T 2wim_A           67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----  142 (291)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBC----
T ss_pred             CCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccccc----
Confidence            55789999999999877665443333322              456777777765   578899999987654321    


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                         ...++......    +|.|.+++.+|+|.|+|.+.+....   .....+.+..+|.+..........+.+|+.+.|.
T Consensus       143 ---~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~  215 (291)
T 2wim_A          143 ---SDNRFAMLANN----NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS  215 (291)
T ss_dssp             ---CCSSEEECTTS----CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEE
T ss_pred             ---CCceEEEccCC----CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEE
Confidence               12333332221    7999999999999999999775422   2344567777777654333224567889999999


Q ss_pred             EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.+.|.|.|.+.|++ ++..+....     .......+..|.|.++..+|.|.|+|.|.|..|.. ++++.|.|..+|
T Consensus       216 C~~~g~p~p~v~W~~-~g~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~~  286 (291)
T 2wim_A          216 CRASGSPEPAISWFR-NGKLIEENE-----KYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQH  286 (291)
T ss_dssp             CBCCCBSCCEEEEEE-TTEECCCTT-----TEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC----
T ss_pred             EEeecCCCCeEEEEE-CCEECcCCc-----cEEEcCCccEEEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEEEec
Confidence            999999999999999 555443211     11112234579999999999999999999999944 888888888765

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.92  E-value=1.9e-23  Score=157.40  Aligned_cols=182  Identities=20%  Similarity=0.410  Sum_probs=130.6

Q ss_pred             ccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+... .....+.+|+.+.|.|.+.+                          .|.+.+.|++++..+..         
T Consensus        98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g--------------------------~p~~~v~W~~~~~~~~~---------  142 (284)
T 2rik_A           98 PPRFIKKLEPSRIVKQDEHTRYECKIGG--------------------------SPEIKVLWYKDETEIQE---------  142 (284)
T ss_dssp             CCEEEECCCSEEEEETTCCEEEEEEEES--------------------------SSCCEEEEEETTEECCC---------
T ss_pred             CCcccccCCCceEecCCceEEEEEEEee--------------------------eCCCEEEEEECCEECcC---------
Confidence            4555433 44566889999999999853                          34677999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ..++..... .....|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...  +....+..|+.+.|.|.+.|.
T Consensus       143 ~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~  219 (284)
T 2rik_A          143 SSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGT  219 (284)
T ss_dssp             SSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSC--CCCEEECTTCCEEEEEECBSS
T ss_pred             CCcEEEEEc-CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeC--CCcceecCCCeEEEEEEEEec
Confidence            223332221 234489999999999999999998753 3455667888887776543  344678899999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.+.+.|++ ++..+....     .......  ...|.|.++..+|.|.|+|.|.|..|.. +.++.|.|.
T Consensus       220 p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  283 (284)
T 2rik_A          220 PPFQVSWHK-DKRELRSGK-----KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY-TCVGSITLK  283 (284)
T ss_dssp             SCCEEEEEE-TTEEECBTT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             CCCEEEEEE-CCEECcCCC-----CEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCce-eEEEEEEEc
Confidence            999999999 555443211     1111111  2478999999999999999999999944 777777774

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.92  E-value=1.1e-24  Score=159.18  Aligned_cols=195  Identities=21%  Similarity=0.338  Sum_probs=130.9

Q ss_pred             cccceeccC----ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941           7 FEPDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         7 ~~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .+|.|...+    ..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+..     
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~-----   62 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGG--------------------------NPMPTMRWLKNGKEFKQ-----   62 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEE--------------------------ESCCEEEEEETTEECCG-----
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEeccc--------------------------CCCCeEEEEECCccccc-----
Confidence            467776555    7888999999999999863                          23567999998765421     


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc---ccccccCCceeecCCCcEEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l  158 (238)
                          ..++..........+|.|.+++.+|+|.|+|.+.+.. .......+.|...+.   ......+....+..|+.+.|
T Consensus        63 ----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l  138 (231)
T 3ojm_B           63 ----EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF  138 (231)
T ss_dssp             ----GGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEE
T ss_pred             ----cccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEE
Confidence                1111000011122389999999999999999997753 334455677765332   11222245567889999999


Q ss_pred             EEEEccccCCeEEEEeC---CCeeeEeecCCCCC----cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         159 VCKAKGYPTPKITWRRE---DNKEIIVRSNPPSS----QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       159 ~C~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      .|.+.+.|.+.+.|+++   ++..+.........    ..........|.|.++..+|.|.|+|.|.|..|.. +.++.|
T Consensus       139 ~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  217 (231)
T 3ojm_B          139 VCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWL  217 (231)
T ss_dssp             ECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             EEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEE
Confidence            99999999999999983   22222111000000    00001123469999999999999999999999954 888899


Q ss_pred             EEEeec
Q psy7941         232 HVHCTY  237 (238)
Q Consensus       232 ~V~~~p  237 (238)
                      .|..+|
T Consensus       218 ~V~~~p  223 (231)
T 3ojm_B          218 TVLPKQ  223 (231)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            998766

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.92  E-value=1.4e-24  Score=157.28  Aligned_cols=195  Identities=22%  Similarity=0.336  Sum_probs=131.3

Q ss_pred             CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941           3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .....+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+....   
T Consensus         4 ~~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~v~W~~~g~~~~~~~---   54 (217)
T 2vr9_A            4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEG--------------------------KPEPTIEWFKDGEPVSTNE---   54 (217)
T ss_dssp             --CCCCCEEEECCCCEEECTTSCEEECCEEEC--------------------------SSCCEEEEEETTEECCCSS---
T ss_pred             ccccCCCEEecCCCceEEeCCCcEEEEEEcCC--------------------------CCCCeEEEEECCcCccCCC---
Confidence            44567899999999999999999999999963                          3456799999876543211   


Q ss_pred             EeecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc-CCcccccccCCceeecCCCcEEE
Q psy7941          83 VITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI-PPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~-~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                          ........... ..+.|.|.+++.+|+|.|+|.+.+....  ...+.+.|.. ++.+..  .+....+..|+.+.|
T Consensus        55 ----~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~--~~~~~~~~~g~~v~l  128 (217)
T 2vr9_A           55 ----KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV--EPKDTRVAKGETALL  128 (217)
T ss_dssp             ----SSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSB--CCCCEEECTTSCEEE
T ss_pred             ----ccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEE--CCCccEEcCCCeEEE
Confidence                00111111111 1123478899999999999999875432  2345566654 333332  234567889999999


Q ss_pred             EEEE-ccccCCeEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         159 VCKA-KGYPTPKITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       159 ~C~~-~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .|.+ .+.|.+.+.|++ ++..+......  ...........+.|.|.++..+|.|.|+|.|.|..|...+....|.+
T Consensus       129 ~C~~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          129 ECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             CCBCCCEESCCEEEEEE-TTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEECCCCCCCCeEEEEE-CCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence            9999 889999999999 55544321110  01122233455689999999999999999999999966455555544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.92  E-value=1e-24  Score=153.08  Aligned_cols=170  Identities=22%  Similarity=0.264  Sum_probs=126.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.+...+..+.+.+|+++.|.|.+...                          +. ..+.|++++..+..        
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~~i~W~~~~~~~~~--------   48 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNF--------------------------FEVSSTKWFHNGSLSEE--------   48 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC------------------------------CCEEEETTEECSC--------
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCC--------------------------CCcceEEEEECCeECCC--------
Confidence            46888888888899999999999998532                          22 35899998754321        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-c
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-G  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~  164 (238)
                                  ...+|.|.+++.+|+|.|+|.+.+.. ....+.+.|..++....   .....+.+|+.+.|.|.+. +
T Consensus        49 ------------~~~~L~i~~v~~~d~G~Y~C~~~~~~-~s~~~~l~V~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~  112 (176)
T 1f2q_A           49 ------------TNSSLNIVNAKFEDSGEYKCQHQQVN-ESEPVYLEVFSDWLLLQ---ASAEVVMEGQPLFLRCHGWRN  112 (176)
T ss_dssp             ------------CSSEEEECSCCGGGCEEEEEECTTSS-CCCCEEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGG
T ss_pred             ------------CceEEEEeccceecCEEEEEEcCCcc-ccccEEEEEeCcceeec---CCcceeeCCCCEEEEEEecCC
Confidence                        11299999999999999999997643 34566777774443322   1224677999999999995 5


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                      .|.+.+.|++ ++..+..           ...+..|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|.
T Consensus       113 ~p~~~~~W~~-~g~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          113 WDVYKVIYYK-DGEALKY-----------WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             CCEEEEEEEE-TTEECCS-----------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CCceEEEEEE-CCEEEee-----------ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            6777999999 5554421           123457999999999999999999998665667889999998873

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.92  E-value=1.3e-23  Score=160.64  Aligned_cols=199  Identities=14%  Similarity=0.159  Sum_probs=134.4

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeee--------------eecCCeEEec----cCCCCceEEEEeCCceeeeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH--------------VNTGGSIVFP----TDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      +...|.+.|.|.+.+......+..+.+.+              +..+....+.    .+.|.+.+.|++++..+.... .
T Consensus        86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~-~  164 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS-Q  164 (313)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE-E
T ss_pred             CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc-e
Confidence            56789999999886544433333333332              2223333332    357899999999876654322 2


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c--ceeeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      .....++.+...+      .|.|.+....|+|.|+|.+.+... .  ...+.|.|..+|.+.... .....+..|+.+.|
T Consensus       165 ~~~~~~~~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~-~~~~~~~~g~~v~l  237 (313)
T 4fqp_A          165 VPGFLSGTVTVTS------LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG-YDNNWYLGQNEATL  237 (313)
T ss_dssp             EECSSTTCEEEEE------EEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEEC-CCSCEETTCCCEEE
T ss_pred             eeeecccccccce------eeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccc-ccceeecCCCeEEE
Confidence            2222334444433      799999999999999999987532 2  223345555566554322 23345677899999


Q ss_pred             EEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         159 VCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       159 ~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.+.|.|.| .+.|+++ +..+..         .....++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.|.++|
T Consensus       238 ~C~~~g~P~p~~v~W~~~-~~~l~~---------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  306 (313)
T 4fqp_A          238 TCDARSNPEPTGYNWSTT-MGPLPP---------FAVAQGAQLLIRPVDKPINTTLICNVTNALGAR-QAELTVQVKEGP  306 (313)
T ss_dssp             EEEEEEESCCCEEEEEET-TBSCCT---------TEEEETTEEEECCCSSCCEEEEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred             EEEecCCCCCcEEEEEEC-CEECCC---------ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE-EEEEEEEEEeCC
Confidence            9999999999 6999994 443321         123345689999999999999999999999954 888999998765

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.92  E-value=2.1e-24  Score=163.14  Aligned_cols=188  Identities=24%  Similarity=0.455  Sum_probs=132.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+....+.+|+++.|.|.+.+                          .|.+.+.|++++..+...       .+
T Consensus       100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~-------~~  146 (291)
T 1qz1_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVS--------------------------SLPPTIIWKHKGRDVILK-------KD  146 (291)
T ss_dssp             CSEEEECCSSEEEETTSCEEECCEEEC--------------------------SSCCEEEEEETTSCSSTT-------CC
T ss_pred             cccccCCCCcccccCCCeEEEEEEecc--------------------------CCCCEEEEEECCEEcccC-------CC
Confidence            566677777888999999999999853                          346679999987654321       12


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      .++.....    ..|.|.+++.+|+|.|+|.+.+.. .  ......+.|..+|.+..........+..|+.+.|.|.+.|
T Consensus       147 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g  222 (291)
T 1qz1_A          147 VRFIVLSN----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADG  222 (291)
T ss_dssp             TTEEECTT----SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEE
T ss_pred             ceEEEccC----CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEE
Confidence            23322221    279999999999999999997643 2  2234456666666655433333456889999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .|.|.+.|++ ++..+...... ............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..
T Consensus       223 ~p~p~i~W~~-~g~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~  290 (291)
T 1qz1_A          223 FPEPTMSWTK-DGEPIENEEED-DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFA  290 (291)
T ss_dssp             ESCCEEEEEE-TTEECCCC--C-CSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             eCCCcEEEEE-CCEECcCCCCC-CcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCc-eEEEEEEEEEc
Confidence            9999999999 55544322100 001111222457999999999999999999999994 47888888864

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.92  E-value=1.4e-23  Score=153.15  Aligned_cols=191  Identities=19%  Similarity=0.327  Sum_probs=118.0

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe------
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI------   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~------   84 (238)
                      .+.+.+.+.+|+++.|.|.+......                       ....++|+|++........  ....      
T Consensus         9 ~P~~pV~v~~G~~v~L~C~v~~~~~~-----------------------~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~   65 (226)
T 4f80_A            9 GPSGPILAMVGEDADLPCHLFPTMSA-----------------------ETMELKWVSSSLRQVVNVYADGKEVEDRQSA   65 (226)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCC-----------------------TTSEEEEEETTTCCEEEEEETTEECGGGSCT
T ss_pred             CCCCCEEEEcCCcEEEEEEEECCCCC-----------------------CceEEEEEECCCCceEEEEeCCeEcccccCc
Confidence            45567899999999999998642211                       1335899987654332111  1100      


Q ss_pred             ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941          85 TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        85 ~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  162 (238)
                      ....|+.....  ..+.++|.|.+++.+|+|.|+|.+.+... ...+.+.+..++.....  .....+.+|..+.|.|.+
T Consensus        66 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~g~~v~l~c~~  142 (226)
T 4f80_A           66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDF-YEKALVELKVAALGSDL--HVDVKGYKDGGIHLECRS  142 (226)
T ss_dssp             TTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCCC--EEEEEEEETTEEEEEEEE
T ss_pred             cccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCc-EEEEEEEEeeccceecc--cceeeeccCCceeeEEEe
Confidence            11234443332  22567999999999999999999987543 33444555543333221  233557789999999999


Q ss_pred             cc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         163 KG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       163 ~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .| .|.|.++|+++++..+.....     ......++   .+.+..+..+|.|.|+|.|.|..|. ..+++.|.|..
T Consensus       143 ~g~~P~p~i~W~k~~~~~~~~~~~-----~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~e  213 (226)
T 4f80_A          143 TGWYPQPQIQWSNNKGENIPTVEA-----PVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIAD  213 (226)
T ss_dssp             EEEBSCCEEEEECTTSCBCCCEEC-----CCEECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCCT
T ss_pred             ccCCCCCEEEEEECCceEcCCCce-----EEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEECC
Confidence            88 699999999966554432211     11111111   2334567889999999999999994 47777777754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.92  E-value=5.4e-24  Score=175.27  Aligned_cols=189  Identities=25%  Similarity=0.387  Sum_probs=137.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+                          .|++.++|+|++..+.         .
T Consensus       196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~g--------------------------~p~p~i~W~k~g~~i~---------~  240 (570)
T 3b43_A          196 VPPFFDLKPVSVDLALGESGTFKCHVTG--------------------------TAPIKITWAKDNREIR---------P  240 (570)
T ss_dssp             CCCEEEECCCCBCCBSBSCEEEEEEEES--------------------------SSCCEEEEEETTEECC---------T
T ss_pred             CCCccccCCceeEecCCCeEEEEEEEEE--------------------------CCCCEEEEEECCEECc---------C
Confidence            4677777788888999999999999963                          4467899999876532         2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+.... .....+.+|+.+.|.|.+.|.
T Consensus       241 ~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~  318 (570)
T 3b43_A          241 GGNYKMTLV-ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL-EPSRIVKQDEHTRYECKIGGS  318 (570)
T ss_dssp             TSSEEEEEE-TTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECC-CSBCCEESSCEEEEEEEEESS
T ss_pred             CCcEEEEEE-CCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccC-CCccEEcCCCcEEEEEEEeeC
Confidence            233333221 223489999999999999999998753 34455667777777654322 223456789999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.+.|++ ++..+....   ............|.|.++..+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus       319 P~p~v~W~k-~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  385 (570)
T 3b43_A          319 PEIKVLWYK-DETEIQESS---KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPP  385 (570)
T ss_dssp             SSCEEEEEE-TTEECCCSS---SEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCC
T ss_pred             CCCEEEEeE-CCEECCCCC---cEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCC
Confidence            999999999 554442211   0011111223479999999999999999999999954 778889998877

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.92  E-value=1.9e-23  Score=149.78  Aligned_cols=181  Identities=14%  Similarity=0.165  Sum_probs=119.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ..+.+.+|+++.|.|.+.+                          .|.+.+.|++......          .++...   
T Consensus         9 ~~~~~~~G~~v~L~C~~~g--------------------------~P~p~i~W~~~~~~~~----------~~~~~~---   49 (202)
T 1vca_A            9 SRYLAQIGDSVSLTCSTTG--------------------------CESPFFSWRTQIDSPL----------NGKVTN---   49 (202)
T ss_dssp             SEEEEETTSCEEEEEEEES--------------------------CSSCEEEEEETTCCCC----------SSEEEE---
T ss_pred             CcEEEcCCCcEEEEEeecC--------------------------CCCCeEEEECCCCCCc----------cceEEE---
Confidence            3445569999999999963                          3466799998432211          011110   


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc-cC--CeEE
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PT--PKIT  171 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~~  171 (238)
                      .....+|.|.+++.+|+|.|+|.+.+... ....+.|.|..+|........  ..+.+|+.+.|.|.+.+. |.  +.+.
T Consensus        50 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~  127 (202)
T 1vca_A           50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEID  127 (202)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEE
T ss_pred             cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEE
Confidence            11234799999999999999999987633 344567888877654332222  457889999999999875 43  3799


Q ss_pred             EEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC------ccceEEEEEEeecC
Q psy7941         172 WRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT------VSKRLMLHVHCTYL  238 (238)
Q Consensus       172 W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~------~~~~~~l~V~~~p~  238 (238)
                      |++ ++..+......... ..........|.+.....+|.|.|+|.|.|..|..      ...++.|.|+++|.
T Consensus       128 W~k-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          128 LLK-GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEE-TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EEe-CCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            999 55555432211100 00011223346677777888899999999998742      35688999999983

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.92  E-value=2.6e-24  Score=169.05  Aligned_cols=171  Identities=25%  Similarity=0.407  Sum_probs=127.0

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+..+.+.+|+++.|.|.+.+                          .|.|.+.|+++++.....        ..+  . 
T Consensus       211 ~~~~~~~~~G~~v~l~C~~~g--------------------------~P~p~i~W~k~~~~~~~~--------~~~--~-  253 (384)
T 3kld_A          211 FPETVPAEKGTTVKLECFALG--------------------------NPVPTILWRRADGKPIAR--------KAR--R-  253 (384)
T ss_dssp             CCSEEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTCCCCCT--------TCE--E-
T ss_pred             CCCceEecCCCcEEEEEEEee--------------------------cCCCcEEEEeCCCccccc--------cce--e-
Confidence            356778889999999999853                          456789999976543211        111  1 


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW  172 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  172 (238)
                        .....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+...  .....+..|+.+.|.|.+.|.|.|.+.|
T Consensus       254 --~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~--~~~~~v~~g~~v~l~C~~~g~P~p~i~W  329 (384)
T 3kld_A          254 --HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTYRW  329 (384)
T ss_dssp             --CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEECTTCCEEEECEEEEESCCEEEE
T ss_pred             --cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC--CCceEecCCCCEEEEeECCccCCCeEEE
Confidence              1112389999999999999999998763 3445667888777765432  3456788999999999999999999999


Q ss_pred             EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      ++ ++..+...      .. ....++.|.|..+..+|+|.|+|.|.|..|.. ..++.|.|.
T Consensus       330 ~k-~g~~l~~~------~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V~  382 (384)
T 3kld_A          330 LK-NGDPLLTR------DR-IQIEQGTLNITIVNLSDAGMYQCVAENKHGVI-FSSAELSVI  382 (384)
T ss_dssp             EE-TTEECCCB------TT-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EE-CCEECCCC------cc-EEEeCCEEEEeecChhhCEEEEEEEEeCCceE-EeceEEEEe
Confidence            99 55544321      11 12345689999999999999999999999944 777778775

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.92  E-value=8.6e-24  Score=150.94  Aligned_cols=182  Identities=18%  Similarity=0.217  Sum_probs=122.6

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.. .+.+|+++.|.|.+..                           +.+.+.|+|++..+.......    
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~~----   51 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL---------------------------EAREYRLDKEESPAPWDRQNP----   51 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT---------------------------TCCEEEEEETTSCSCSEEECC----
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC---------------------------CCCEEEEEECCCCCccccccc----
Confidence            57788777777 8899999999999853                           245699999876543211000    


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcC---CcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                             .......+|.|.+++.+|+|.|+|.+.+...   .+..+.|.|...   |.+..  .+ ...+.+|+.+.|.|
T Consensus        52 -------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~--~~-~~~v~~G~~v~L~C  121 (196)
T 3p2t_A           52 -------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSA--LP-SPLVTSGKSVTLLC  121 (196)
T ss_dssp             -------CSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEE--ES-CSEECTTCCEEEEE
T ss_pred             -------ccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEe--CC-cceecCCCeEEEEE
Confidence                   0012234899999999999999999987543   244556677643   22222  12 23578999999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEEE
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHVH  234 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V~  234 (238)
                      .+.+. .+.+.|++++. .+.....  ............|.|.++..+|+|.|+|.|.|..+    ...+..+.|.|.
T Consensus       122 ~~~~~-~~~~~w~k~g~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          122 QSRSP-MDTFLLCKERA-AHPLLCL--RSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEEE-EEEEEEEETTC-CCGGGSE--EEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             ecCCC-CCEEEEEeCCC-cccceee--cccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            99874 46899999543 2211000  00011123455799999999999999999999876    455777877764

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.92  E-value=8e-24  Score=168.00  Aligned_cols=182  Identities=18%  Similarity=0.251  Sum_probs=122.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLS   91 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~   91 (238)
                      ++....+.+|+++.|.|.+.+.                         .|.+.+.|++++..+.....  ..... ..+..
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~-------------------------~p~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~  286 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHV-------------------------NHGFGLTWELENKALEEGNYFEMSTYS-TNRTM  286 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEES-------------------------SSCCCEEEEESSSBCCGGGEEEEEEEE-TTTEE
T ss_pred             CCCceEEeCCCeEEEEEEEEcC-------------------------CCCcEEEEEECCEEccccceeeccccc-CCcee
Confidence            4557789999999999999631                         33567999998775422100  00011 11111


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT  171 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  171 (238)
                      ..     ..+|.|.+++.+|+|.|+|.+.|.  ....+.|.|..+|.+...+......+.+|+.+.|.|.+.|+|.|.+.
T Consensus       287 ~~-----~~~L~I~~v~~~D~G~Y~C~A~N~--~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~  359 (423)
T 3qs7_E          287 IR-----ILFAFVSSVARNDTGYYTCSSSKH--PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT  359 (423)
T ss_dssp             EE-----EEEEEESSCCTTTCEEEEEEETTE--EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred             EE-----EEEEEEeecCHHHCEEEEEEEecC--CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEE
Confidence            11     127999999999999999999776  66677888888877654433345678889999999999999999999


Q ss_pred             EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |++ ++..+........       ....+.......+|+|.|+|.|.|..|. .+.++.|.|..+|
T Consensus       360 W~k-~g~~l~~~~~~~~-------~~~~~~~~~~~~~D~G~YtC~A~N~~G~-~~~s~~L~v~~~p  416 (423)
T 3qs7_E          360 WTF-SRKSFPCEQKGLD-------NGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT  416 (423)
T ss_dssp             EEE-TTEEEECBCCBCS-------SSSEEEEECCCTTCCSCEEEEEEETTEE-EEEEEEEC-----
T ss_pred             EEE-CCEECCCcccccc-------CCcEEEEEecccccCEEEEEEEEcCCce-EEEEEEEEEecCC
Confidence            999 5655543210000       0111222445678999999999999994 4889999988765

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.92  E-value=7.5e-25  Score=157.66  Aligned_cols=193  Identities=20%  Similarity=0.337  Sum_probs=133.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeE--e
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHV--I   84 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~--~   84 (238)
                      .+.|..++..+.+.+|+++.|.|.+..                          .|.+.+.|++++........ ...  .
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~~~~~~~~~   57 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSG--------------------------FSSPRVEWKFDQGDTTRLVCYNNKITA   57 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEES--------------------------CSSEEEEEEEEETTEEEESEETTEECT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeC--------------------------CCCcEEEEEEcCCceeEEEEecCccCc
Confidence            456778888999999999999999863                          24667999997655321110 000  1


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~  161 (238)
                      ....|+....     .+|.|.+++.+|+|.|+|.+.+..   .......|.|..+|.+.....  ...+..|+.+.|.|.
T Consensus        58 ~~~~r~~~~~-----~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~  130 (209)
T 1nbq_A           58 SYEDRVTFLP-----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI--PSSATIGNRAVLTCS  130 (209)
T ss_dssp             TTTTTCEEET-----TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC--BSEEETTSCEEECCC
T ss_pred             cccCceEeec-----cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc--ccceecCCEEEEEEe
Confidence            1234554443     389999999999999999997742   234456677887777654322  345788999999999


Q ss_pred             E-ccccCCeEEEEeCCCeeeEeecCCC--C--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEE
Q psy7941         162 A-KGYPTPKITWRREDNKEIIVRSNPP--S--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVH  234 (238)
Q Consensus       162 ~-~~~p~~~~~W~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~  234 (238)
                      + .+.|.+.+.|+++ +..+.......  .  .........+.|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|.
T Consensus       131 ~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          131 EQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             CCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             CCCCCCCceeEEEEC-CeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            7 8899999999994 44333211100  0  001111234589999999999999999999999965 4666767664

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.92  E-value=3.5e-23  Score=149.59  Aligned_cols=194  Identities=21%  Similarity=0.307  Sum_probs=122.7

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe--------
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI--------   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--------   84 (238)
                      ..++.+.|.+|+++.|.|.+....+..                       .+.+.|+|++............        
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~   60 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQ-----------------------VGQVAWARVDAGEGAQELALLHSKYGLHVS   60 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCE-----------------------EEEEEEEEECSSSCEEEEEEEETTTEEEEC
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCC-----------------------ccEEEEEECCCCCCceeEEEecCCCCeEeC
Confidence            456788999999999999996533222                       2358999976543221111100        


Q ss_pred             -ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEcCCcccccccCCceeecCCCcEEEE
Q psy7941          85 -TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        85 -~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                       ....|+.....  ....++|.|.+++.+|+|.|.|.+.+......  ...+.+..++.... .......+..+..+.+.
T Consensus        61 ~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  139 (218)
T 4frw_A           61 PAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSL-NPGPALEEGQGLTLAAS  139 (218)
T ss_dssp             GGGTTTEECCSSCCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEE-EECSCEETTCCSEEEEE
T ss_pred             ccccceEEEecccccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeecccee-eeeeeeeeeecccccee
Confidence             11223333221  22456899999999999999999866433222  22344444333322 22344567788999999


Q ss_pred             EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.+.+.|.|.+.|++++.......... ...  .....+.|.|..+..+|.|.|+|.|.|..|.. ...+.+.|+
T Consensus       140 c~~~g~p~p~i~W~~~~~~~~~~~~~~-~~~--~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v~  210 (218)
T 4frw_A          140 CTAEGSPAPSVTWDTEVKGTTSSRSFK-HSR--SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHILH  210 (218)
T ss_dssp             EEEEEBSCCEEEEEESSCCEEEEEEEE-CSS--SEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEECC
T ss_pred             eeccCCcCceEEEEECCcccccCceEe-cCC--cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEEE
Confidence            999999999999999544332221111 101  11223469999999999999999999999844 555555444

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.92  E-value=2e-23  Score=171.87  Aligned_cols=185  Identities=21%  Similarity=0.418  Sum_probs=134.9

Q ss_pred             ccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|..... ...+.+|+.+.|.|.+.                          +.|.+.+.|+|++..+..         
T Consensus       290 ~p~~~~~~~~~~~v~~g~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~~---------  334 (570)
T 3b43_A          290 PPRFIKKLEPSRIVKQDEHTRYECKIG--------------------------GSPEIKVLWYKDETEIQE---------  334 (570)
T ss_dssp             CCEEEECCCSBCCEESSCEEEEEEEEE--------------------------SSSSCEEEEEETTEECCC---------
T ss_pred             CCcccccCCCccEEcCCCcEEEEEEEe--------------------------eCCCCEEEEeECCEECCC---------
Confidence            566654433 34578999999999985                          345778999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ..++.+... .....|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...  +....+.+|+.+.|.|.+.|.
T Consensus       335 ~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~~~~G~~v~l~C~~~g~  411 (570)
T 3b43_A          335 SSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--PHPVETLKGADVHLECELQGT  411 (570)
T ss_dssp             SSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSC--CCCEEECTTCCEEEEEEEESS
T ss_pred             CCcEEEEEE-CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecC--CCceeecCCCEEEEEEEEecC
Confidence            233333322 22348999999999999999999886 44556677888888876543  344677889999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.+.|++ ++..+...     ........  ...|.|.++..+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus       412 P~p~v~W~k-~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~~~P  478 (570)
T 3b43_A          412 PPFQVSWHK-DKRELRSG-----KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD-TCVGSITLKAPP  478 (570)
T ss_dssp             SSCCCEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECCCC
T ss_pred             CCCEEEEEE-CCEECcCC-----CCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEeccCC
Confidence            999999999 55444211     11111111  2378999999999999999999999944 677788888776

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.92  E-value=6.8e-24  Score=149.92  Aligned_cols=172  Identities=18%  Similarity=0.309  Sum_probs=121.5

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-ee----cCccE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-IT----NNARL   90 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~----~~~~~   90 (238)
                      +.+.+.+|+++.|.|.+..                          .|.+.+.|++++........... ..    ...|+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~--------------------------~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~   56 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQ--------------------------KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRA   56 (184)
T ss_dssp             CEEEEETTSCEEECCBCSS--------------------------SSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGE
T ss_pred             CcEEEeCCCCEEEEEEEcC--------------------------CCceEEEEEeCCccceEEecCceEecCChhhCCcc
Confidence            3567899999999999852                          34567999998764332211111 11    12344


Q ss_pred             EEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          91 SVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        91 ~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      .....  ..+..+|.|.+++.+|+|.|+|.+.+..   ..+.+.|...+      .+....+.+|+.+.|.|.+.+.|.|
T Consensus        57 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~---~~~~l~V~~~~------~~~~~~v~~g~~~~l~C~~~~~p~~  127 (184)
T 2ny1_B           57 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFGLT------ANSDTHLLQGQSLTLTLESPPGSSP  127 (184)
T ss_dssp             ECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEEEE------ESSCSEEETTCCEEEEEECCTTCCC
T ss_pred             ccccccccCCeEEEEEecCCHHHCEEEEEEEEcCC---CcEEEEEEEec------CCCCceeecCCCEEEEEEcCCCCCC
Confidence            43321  2234579999999999999999996542   24456655311      1223467899999999999889999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.|+++++..              ......|.|.++..+|.|.|+|.|.|..+ ..+..+.|.|...|
T Consensus       128 ~v~W~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~-~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          128 SVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ  181 (184)
T ss_dssp             EEEEECTTSCE--------------EEESSEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCC
T ss_pred             EEEEEeCCCcc--------------ccCceEEEEecCCcCCCeEEEEEEEECCc-eEEEEEEEEEEecC
Confidence            99999954322              23456799999999999999999999887 44788888888765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.92  E-value=8.7e-24  Score=150.92  Aligned_cols=182  Identities=15%  Similarity=0.146  Sum_probs=112.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.. .+.+|+++.|.|.+...                           +..+.|+|++..+......     
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~---------------------------~~~~~W~k~g~~~~~~~~~-----   50 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLE---------------------------AQEYRLVKEGSPEPWDTQN-----   50 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTCSSCSEEEC-----
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCC---------------------------CcEEEEEECCCCCCccccc-----
Confidence            46788777764 78899999999998532                           2269999987654221100     


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcC---CcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                            .........|.|.+++.+|+|.|+|.+.+...   .+..+.|.|...   |.+..   .....+.+|+.+.|.|
T Consensus        51 ------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~---~~~~~v~~G~~v~L~C  121 (196)
T 2d3v_A           51 ------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSA---LPSPVVTSGENVTLQC  121 (196)
T ss_dssp             ------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC--------------CEEEE
T ss_pred             ------ccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEc---cCCccccCCCcEEEEE
Confidence                  00112334899999999999999999976532   234566777752   33322   1224678899999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEE
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHV  233 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V  233 (238)
                      .+.+.| +.+.|++++..............  .......|.|.++..+|+|.|+|.|.|..+    ...+..+.|.|
T Consensus       122 ~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          122 GSRLRF-DRFILTEEGDHKLSWTLDSQLTP--SGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             EESSCC-SEEEEEEC---CCEEEEECEECT--TSCEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred             EcCCCC-CEEEEEccCCccccccccccccc--CCCceeEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence            999988 89999995433211110000000  001235799999999999999999999764    34466666654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.92  E-value=2.6e-24  Score=169.80  Aligned_cols=180  Identities=24%  Similarity=0.419  Sum_probs=133.6

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+...+....+.+|+++.|.|.+..                          .|.+.+.|++++..+..        ...+
T Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~--------------------------~p~~~~~W~~~~~~~~~--------~~~~  268 (403)
T 3laf_A          223 YFLQRPSNVIAIEGKDAVLECCVSG--------------------------YPPPSFTWLRGEEVIQL--------RSKK  268 (403)
T ss_dssp             EEEECCCCEEEETTSCEEECCEEEE--------------------------ESCCEEEEEETTEECCC--------SSSS
T ss_pred             eEecCCCceEecCCCcEEEEEEcCC--------------------------CCCCeEEEEECCeeccC--------CCce
Confidence            3455667788889999999999863                          34567999997765422        1222


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      +.....    .+|.|.+++.+|+|.|+|.+.+. +.....+.+.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|
T Consensus       269 ~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p  342 (403)
T 3laf_A          269 YSLLGG----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVP  342 (403)
T ss_dssp             EEEETT----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEECCTTCCEEECCEEEEESCC
T ss_pred             EEECCc----cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeec--CcceEEecCCeEEEEEEEeeccCC
Confidence            222221    18999999999999999999875 33455667888777766433  345678899999999999999999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.|++ ++..+...      .......++.|.|..+..+|.|.|+|.|.|..|.. +.++.|.|..||
T Consensus       343 ~v~W~~-~g~~~~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~P~  403 (403)
T 3laf_A          343 TVNWMK-NGDVVIPS------DYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA-QSSAQLIVPKPA  403 (403)
T ss_dssp             EEEEEE-TTEECCCS------SSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEECCCC-
T ss_pred             EEEEEE-CCEECCCC------CcEEEecCccEEEeccccccCEEEEEEEEcCCceE-EEEEEEEEeCCC
Confidence            999999 55444221      22233445679999999999999999999999944 888899998876

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.92  E-value=7.8e-24  Score=156.55  Aligned_cols=187  Identities=17%  Similarity=0.224  Sum_probs=121.6

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee---eeeeee-----
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV---LAIHEH-----   82 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~~-----   82 (238)
                      +..++..+.+.+|+++.|.|.+...                       ...|.+.+.|++++....   ......     
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~-----------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~   61 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLA-----------------------NDTQPPVISWLKGASPDRSTKVFKGNYNWQGE   61 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEEC-----------------------SCCSCCEEEEEEEEETTEEEEEEEEEECCCBT
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcC-----------------------CCCCceEEEEEeCCCCCccEEEEeeccccccc
Confidence            4566778899999999999998641                       123467899999764321   111000     


Q ss_pred             -------------EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcCC--cccc
Q psy7941          83 -------------VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIPP--DISS  141 (238)
Q Consensus        83 -------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~~--~~~~  141 (238)
                                   .....+|+.+..  .+..+|.|.+++.+|+|.|+|.+.+....      ...+.|.|..++  ....
T Consensus        62 ~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~  139 (250)
T 2fbo_J           62 GLGFVESDSYKESFGDFLGRASVAN--LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH  139 (250)
T ss_dssp             TBCCCTTSEEEEECGGGTTTEECSC--TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCE
T ss_pred             cccccccccccccCCCcCceEEecc--CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEE
Confidence                         011233443322  23458999999999999999999875432      225567776542  2222


Q ss_pred             cccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC------------------CCCCcceEEEeeceEEEE
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN------------------PPSSQKVFSVESEVLSLT  203 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~  203 (238)
                      ...+....+.+|+.+.|.|.+.+.|.|.+.|+++ +..+.....                  ..............|.|.
T Consensus       140 ~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  218 (250)
T 2fbo_J          140 VSTAEVVQVDEGNDITMTCPCTDCANANVTWYTG-PTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIR  218 (250)
T ss_dssp             ECCCSEEECCTTCCEEECCCEESCTTCEEEEEEE-EECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEEC
T ss_pred             EecCceEEecCCCcEEEEEEecCCCCCeeEEEeC-CCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEe
Confidence            2234456678899999999999999999999994 332211000                  000111111233689999


Q ss_pred             EeecCCCeEEEEEeeeCCCC
Q psy7941         204 KVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ++..+|+|.|+|.|.|..|.
T Consensus       219 ~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          219 AAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             SCCGGGCEEEEEEEESSSSG
T ss_pred             cCCcccCEEEEEEecCCccc
Confidence            99999999999999997764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.91  E-value=4.5e-23  Score=168.15  Aligned_cols=197  Identities=19%  Similarity=0.256  Sum_probs=139.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCcee--eeeeeee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKA--VLAIHEH   82 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~--~~~~~~~   82 (238)
                      ..+|.|...+....+.+|+++.|.|.+.+                          .|.+. +.|++++...  .... ..
T Consensus       209 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g--------------------------~p~p~~i~W~~~~~~~~~~~~~-~~  261 (524)
T 2ec8_A          209 KAVPVVSVSKASYLLREGEEFTVTCTIKD--------------------------VSSSVYSTWKRENSQTKLQEKY-NS  261 (524)
T ss_dssp             CSCCEEECSCSEEEEETTSCEEEEEEEEE--------------------------SSTTCEEEEEETTCSCCCCEEE-EE
T ss_pred             CCCCcEEecCCcceEEcCCcEEEEEEEec--------------------------CCCcEEEEEEeCCCCCcccccc-cc
Confidence            36788888888889999999999999963                          23444 9999987763  2111 11


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccccccc-CCceeecCCCcEEEEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEET-SGDMMVPEGGSAKLVC  160 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~-~~~~~~~~g~~~~l~C  160 (238)
                      .+..+.....      ..+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...+. .....+.+|+.+.|.|
T Consensus       262 ~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C  335 (524)
T 2ec8_A          262 WHHGDFNYER------QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIV  335 (524)
T ss_dssp             EECSSSCEEE------EEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEE
T ss_pred             ccccCCccce------EEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEE
Confidence            1111111211      2399999999999999999998753 334466788888777654332 2457789999999999


Q ss_pred             EEccccCCe-EEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         161 KAKGYPTPK-ITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       161 ~~~~~p~~~-~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.|.|.|. +.|+++ +..+......  .............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..+|
T Consensus       336 ~~~g~P~p~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P  413 (524)
T 2ec8_A          336 EYEAFPKPEHQQWIYM-NRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKP  413 (524)
T ss_dssp             EEEEESCCCEEEEESS-SCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECEEE
T ss_pred             EEeecCCCcEEEEEEC-CeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce-EEEEEEEEEecCC
Confidence            999999998 999995 4433221100  0000000112357999999999999999999999995 5888999998887

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.91  E-value=1.2e-23  Score=150.50  Aligned_cols=185  Identities=17%  Similarity=0.168  Sum_probs=118.9

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+. ..+.+|+++.|.|.+...                          | +.+.|+|++..+.....      
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~--------------------------~-~~~~W~k~g~~~~~~~~------   49 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQE--------------------------T-QEYRLYREKKTAPWITR------   49 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTT--------------------------C-CCEEEEESSSCCHHHHT------
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCC--------------------------C-cEEEEEECCcccccccc------
Confidence            4677777666 488999999999998532                          1 24999998765321000      


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEcCC-cccccccCCceeecCCCcEEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~C~  161 (238)
                      ...     ......+|.|.+++.+|+|.|+|.+.+..    ..+..+.|.|...+ .+.... .....+.+|+.+.|.|.
T Consensus        50 ~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~-~~~~~v~~G~~v~L~C~  123 (198)
T 1ugn_A           50 IPQ-----ELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSA-QPSPVVNSGGNVTLQCD  123 (198)
T ss_dssp             SCH-----HHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEE-ESCSEEETTCCEEEEEE
T ss_pred             ccc-----cCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCcccc-CCccccCCCCcEEEEEe
Confidence            000     00112289999999999999999997754    23455677777622 222211 12256789999999999


Q ss_pred             EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEEE
Q psy7941         162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHVH  234 (238)
Q Consensus       162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V~  234 (238)
                      +.+. .+.+.|++++. .+........ ..........|.|.++..+|.|.|+|.|.|..+.    ..+..+.|.|.
T Consensus       124 ~~~~-~~~v~W~k~g~-~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          124 SQVA-FDGFILCKEGE-DEHPQCLNSQ-PHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             CSSC-CSEEEEEEC-------CEEEC-------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             cCCC-CcEEEEEECCC-ccCCcccccc-ccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            9887 78999999543 3321100000 0000012357999999999999999999998753    33677887774

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.91  E-value=8e-23  Score=168.72  Aligned_cols=201  Identities=17%  Similarity=0.229  Sum_probs=137.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceE----EEEe--CCc--eeeeee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV----AWIK--ADT--KAVLAI   79 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~W~~--~~~--~~~~~~   79 (238)
                      +|.+...+..+.+.+|+++.|.|.+..                          .|.+.+    .|++  ++.  .+....
T Consensus       331 ~p~~~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~p~i~~w~~W~~~~~g~~~~l~~~~  384 (585)
T 2ocw_A          331 ESTIPRSPTVVKGVAGSSVAVLCPYNR--------------------------KESKSIKYWCLWEGAQNGRCPLLVDSE  384 (585)
T ss_pred             ccccccCCcceEEEeCCcEEEEEecCC--------------------------CCCccEEEEEEEEccCCCCCceeeeec
Confidence            567777788889999999999999853                          334555    7999  665  333222


Q ss_pred             eeeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941          80 HEHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      .........|+.+... ..+.++|.|.+++.+|+|.|+|.+...+.....+.|.|...+....  .+....+..|+.+.|
T Consensus       385 ~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~--~~~~~~v~~G~~v~L  462 (585)
T 2ocw_A          385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKV  462 (585)
T ss_pred             ceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCCCccceeEEEEEecCccccc--cCCceeEecCCcEEE
Confidence            2222233456665532 3345579999999999999999993334445566777765433222  145567889999999


Q ss_pred             EEEEc----cccCCeEEEEeCCCeeeEeecCCCCCc-ceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         159 VCKAK----GYPTPKITWRREDNKEIIVRSNPPSSQ-KVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       159 ~C~~~----~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      .|.+.    +.|.+.+.|++++. .+.......... ....   .....|.|.++..+|+|.|+|.|.|..|...+..+.
T Consensus       463 ~C~~~~~~~~~p~~~v~W~k~g~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~  541 (585)
T 2ocw_A          463 PCHFPCKFSSYEKYWCKWNNTGC-QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVY  541 (585)
T ss_pred             EEEecCCCCCCccEEEEEeecCc-eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEE
Confidence            99986    67888999999544 332221111111 1111   112479999999999999999999999976566689


Q ss_pred             EEEEeec
Q psy7941         231 LHVHCTY  237 (238)
Q Consensus       231 l~V~~~p  237 (238)
                      |.|..+|
T Consensus       542 l~V~~~p  548 (585)
T 2ocw_A          542 VAVEERK  548 (585)
T ss_pred             EEEEeee
Confidence            9999887

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.91  E-value=7.1e-24  Score=153.34  Aligned_cols=185  Identities=19%  Similarity=0.241  Sum_probs=116.6

Q ss_pred             cCceeEEEec--CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEeecCcc
Q psy7941          14 PLENVTIAQG--RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        14 ~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~~~   89 (238)
                      .+..+.+.+|  +++.|.|.+.+                           |.+.+.|++.  ++....        ...+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~---------------------------p~~~v~w~~~~~~g~~~~--------~~~~   57 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI---------------------------SNLNVSLCARYPEKRFVP--------DGNR   57 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS---------------------------TTCCEEEEEETTTEEECC--------CSSS
T ss_pred             CceEEEEecCCCccEEEeeccCC---------------------------CCcEEEEEhhcCCCcccc--------CCCc
Confidence            3578899999  99999999853                           3456999985  343221        1122


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCccee--eEEEEEcCCccc-ccccCCceeecCCCcEEEEEEEcccc
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQM--AFLEVVIPPDIS-SEETSGDMMVPEGGSAKLVCKAKGYP  166 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~p  166 (238)
                      +......    .|.|.+++.+|+|.|+|.+.+.+.....  ..+.|.....+. .......+.+.+|+.+.|.|.+.|.|
T Consensus        58 ~~~~~~~----~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p  133 (213)
T 2x1w_L           58 ISWDSKK----GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL  133 (213)
T ss_dssp             CEEETTT----EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECT
T ss_pred             ccccCCc----cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCC
Confidence            2222211    7999999999999999999764433222  445554322111 11223334788999999999999854


Q ss_pred             --CCeEEEEeCCCeeeEe-e--cCCCCCcc-eEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         167 --TPKITWRREDNKEIIV-R--SNPPSSQK-VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       167 --~~~~~W~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                        .+.+.|++++...... .  ........ ......+.|.|.++..+|+|.|+|.|.|..|.. ++++.|.|..+|+
T Consensus       134 ~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~  210 (213)
T 2x1w_L          134 NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPI  210 (213)
T ss_dssp             TBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC---
T ss_pred             CCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEecccc
Confidence              4589999955431110 0  00000000 001223479999999999999999999999954 8899999998874

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.91  E-value=2.5e-23  Score=157.21  Aligned_cols=188  Identities=18%  Similarity=0.354  Sum_probs=133.6

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+.                          | +.+.|++.++....        .
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~--------------------------p-~~v~W~~~~g~~~~--------~   47 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGE--------------------------P-ESIDWYNPQGEKII--------S   47 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESC--------------------------C-SEEECBCTTCCBCC--------C
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCC--------------------------C-CceEEECCCCcCcc--------C
Confidence            57899999999999999999999999642                          2 26999995444322        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ..++.+.... ...+|.|.+++.+|+|.|+|.+.+.....  ....+.|..++.+..  .+....+.+|+.+.|.|.+.+
T Consensus        48 ~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~--~~~~~~v~~G~~v~l~C~~~~  124 (291)
T 2wim_A           48 TQRVVVQKEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE--VVSPQEFKQGEDAEVVCRVSS  124 (291)
T ss_dssp             BTTEEEEEET-TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCS--CCCSEEEETTSCEEECCCCBC
T ss_pred             CCcEEEecCC-CEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEe--CCCChhhcCCCCEEEEEEEcc
Confidence            3344443322 34489999999999999999998754433  344566666665443  234567889999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceEEEEEEeec
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRLMLHVHCTY  237 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~V~~~p  237 (238)
                      .|.+.+.|++++ ..+...    .........++.|.|.++..+|.|.|+|.+.|..+. .....+.+.|..+|
T Consensus       125 ~p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p  193 (291)
T 2wim_A          125 SPAPAVSWLYHN-EEVTTI----SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP  193 (291)
T ss_dssp             SSCCEEEEECC-----CBC----CCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCC
T ss_pred             CCCCEEEEEECC-cccccc----CCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCC
Confidence            999999999944 333211    112222334557999999999999999999998852 33466777777766

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=4.5e-23  Score=162.01  Aligned_cols=190  Identities=19%  Similarity=0.380  Sum_probs=133.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~   85 (238)
                      +|.|.. +....+.+|+++.|.|.+.                          +.|.+.+.|+|+  +..+...    ...
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~~~~~g~~~~~~----~~~   49 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAE--------------------------GEPIPEITWKRAVDGFTFTEG----DKS   49 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEE--------------------------CSSCCEEEEEETTTTEEECC------CC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEee--------------------------cccCCeEEEEeCCCCceeccC----cCC
Confidence            466665 5667788999999999996                          345678999998  3332110    011


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      .+.++.+... ....+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...  .....+..|+.+.|.|.+.|
T Consensus        50 ~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g  126 (389)
T 2jll_A           50 LDGRIEVKGQ-HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKS  126 (389)
T ss_dssp             SSSSEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCS--CCEEEECTTCCEEEEECEEE
T ss_pred             CCCeEEEecc-CCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecC--cceEEeccCCEEEEEEEEEe
Confidence            1345555432 34559999999999999999999875 33455677888877776532  33346788999999999999


Q ss_pred             ccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         165 YPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       165 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|.+.+.|++ ++..+.....    .....   .....|.|.++..+|.|.|+|.|.|..|.. ...+.+.|..+|
T Consensus       127 ~p~~~i~W~~-~g~~l~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P  196 (389)
T 2jll_A          127 NPPASIHWRR-DKLVLPAKNT----TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILALADVP  196 (389)
T ss_dssp             ESCCEEEEEE-TTEESSCTTC----TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEECCCC
T ss_pred             cCCCeEEEEE-CCccCCcccC----ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEecCCC
Confidence            9999999999 5544432110    11111   123469999999999999999999999954 566666665443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=1.3e-22  Score=143.95  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=120.5

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.. .+.+|++++|+|.+...                           .+.+.|+|++..+....       
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~---------------------------~~~~~w~k~g~~~~~~~-------   47 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG---------------------------AVEYQLHFEGSLFAVDR-------   47 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTEEEEEEC-------
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCC---------------------------CCEEEEEECCCcccccc-------
Confidence            46778777776 78999999999998521                           34589999876543110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      ...    .......+|.|.+++.+|+|.|+|.+.+..   ..+..+.|.|..   +|.+..  .+ ...+.+|+.+.|.|
T Consensus        48 ~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~--~p-~~~v~~G~~v~L~C  120 (188)
T 1oll_A           48 PKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSV--HP-GPEVISGEKVTFYC  120 (188)
T ss_dssp             CSS----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEE--ES-CSEEETTCEEEEEE
T ss_pred             ccc----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEE--CC-CCccccCCEEEEEE
Confidence            000    011233489999999999999999997642   123455677764   333322  12 34578999999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC--CCccceEEEEEE
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP--PTVSKRLMLHVH  234 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g--~~~~~~~~l~V~  234 (238)
                      .+.+ +.+.+.|++++. .+...       .........|.|.++..+|+|.|+|.|.|...  ...+..+.|.|.
T Consensus       121 ~~~~-~~~~~~w~k~g~-~~~~~-------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          121 RLDT-ATSMFLLLKEGR-SSHVQ-------RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             ECSS-SCSEEEEEEESS-SCEEE-------EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EcCC-CCCEEEEEECCc-ccccc-------ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9876 456999999543 33211       01122345799999999999999999998642  355778888775

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.91  E-value=3.4e-24  Score=155.82  Aligned_cols=197  Identities=19%  Similarity=0.331  Sum_probs=122.6

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--e--EeecCccEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--H--VITNNARLS   91 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--~--~~~~~~~~~   91 (238)
                      +.+.+.+|+++.|.|.+......                     ....+.+.|++++.........  .  .....+|+.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~   61 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGF---------------------SLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTA   61 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTC---------------------CTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEE
T ss_pred             CCEEEECCCCeEEEEEecCCCCC---------------------CCCceEEEEEECCCccEEEEEcCCcccccceeCcEE
Confidence            45678899999999998643210                     0123579999986543221110  0  011233444


Q ss_pred             EEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccccCC
Q psy7941          92 VTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTP  168 (238)
Q Consensus        92 ~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~  168 (238)
                      +...  ..+..+|.|.+++.+|+|.|+|.+.+.......+.|.|..++............+..|+.+.|.|.+ .+.|.+
T Consensus        62 ~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~  141 (222)
T 4i0k_A           62 LFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA  141 (222)
T ss_dssp             CCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC
T ss_pred             EecccccCCeEEEEECCcccccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC
Confidence            3221  1125589999999999999999998765545555666665433221112223456789999999999 789999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                      .+.|+++++..+.....    ........   ..|.+.++..+|.|.|+|.|.|..| ....++.|.|..+|+
T Consensus       142 ~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          142 EVFWKDGQGVPLTGNVT----TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVL-QQDAHGSVTITGQPL  209 (222)
T ss_dssp             EEEEECTTSCBCCSEEE----EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTT-TEEEEEEEECCC---
T ss_pred             eEEEEcCCCccCCCCcc----eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCC-CCceEEEEEEeCCcc
Confidence            99999855543321110    00000111   1378899999999999999999999 448888999988875

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.91  E-value=2.6e-23  Score=145.02  Aligned_cols=167  Identities=17%  Similarity=0.228  Sum_probs=123.4

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...+..+.+.+|+++.|.|.+....                         +.+.+.|++++..+..         
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p-------------------------~~~~~~W~~~g~~~~~---------   48 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSP-------------------------ESDSIQWFHNGNLIPT---------   48 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCS-------------------------SSSCEEEEETTEECTT---------
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCC-------------------------CcceEEEEECCeEccc---------
Confidence            456777778888899999999999986421                         1457999997665321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~  165 (238)
                      ..           ..+.+.+++.+|+|.|+|.+.+. .....+.+.|..++....   .....+.+|+.+.|.|.+. +.
T Consensus        49 ~~-----------~~~~~~~~~~~d~G~Y~C~~~~~-~~s~~~~l~v~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~~  113 (170)
T 3ry4_A           49 HT-----------QPSYRFKANNNDSGEYTCQTGQT-SLSDPVHLTVLFEWLVLQ---TPHLEFQEGETIMLRCHSWKDK  113 (170)
T ss_dssp             CC-----------SSEEEEECCGGGCEEEEEEETTS-BCCCCEEEEEECCSEEEE---CSCSEECTTCCEEEEEEEGGGC
T ss_pred             Cc-----------cceEEEecccccCeEEEEEEeCC-CceEeEEEEEECCceEec---CCCceeecCCeEEEEEECCCCC
Confidence            11           15667789999999999999753 334556777776554332   2235678899999999994 56


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.+.+.|++ ++..+...           .....|.|.++..+|.|.|+|.|.|..|...+..+.|.|+
T Consensus       114 p~~~~~W~~-~g~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          114 PLVKVTFFQ-NGKSQKFS-----------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             CEEEEEEEE-TTEEEEEE-----------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCceEEEEE-CCeEcccc-----------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence            778999999 55544321           1245699999999999999999999998656788888774

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.3e-23  Score=157.47  Aligned_cols=199  Identities=17%  Similarity=0.240  Sum_probs=127.7

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeee--------------eeecCCeEEeccC--CCC-ceEEEEeCCceeeeeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT--------------HVNTGGSIVFPTD--SSA-MKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~-~~~~W~~~~~~~~~~~~~~   82 (238)
                      +...|.+.|.|.+.+  +.  +..+.+.              .+..|+.+.+.|.  .|. +.+.|++.++....     
T Consensus        64 ~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~-----  134 (290)
T 2o26_X           64 AEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLP-----  134 (290)
T ss_dssp             CCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCC-----
T ss_pred             cCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCC-----
Confidence            456778888888877  32  2222222              1334666666654  466 88999654443221     


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~  155 (238)
                         ...++......    .|.|.+++.+|+| .|+|.+.+....  +..+.+.|.    .+|.+...  +....+.+|+.
T Consensus       135 ---~~~~~~~~~~~----~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~--~~~~~v~~G~~  205 (290)
T 2o26_X          135 ---TDLTFVPNPKA----GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVP--ETSHLLKKGDT  205 (290)
T ss_dssp             ---TTCEEEEETTT----EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECS--CSBCCCCTTCC
T ss_pred             ---CCCceeeCCCC----CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccC--CCcceEecCCc
Confidence               22333333222    8999999999999 999999886433  234667776    44544332  33347889999


Q ss_pred             EEEEEEEccccCCe-EEEEeCCCee---eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         156 AKLVCKAKGYPTPK-ITWRREDNKE---IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       156 ~~l~C~~~~~p~~~-~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +.|.|.+.|.|.|. +.|++++...   +.................+.|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus       206 v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l  284 (290)
T 2o26_X          206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTL  284 (290)
T ss_dssp             EEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEE
T ss_pred             EEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEE
Confidence            99999999999996 9999955442   111110000000012334589999999999999999999999955 889999


Q ss_pred             EEEeec
Q psy7941         232 HVHCTY  237 (238)
Q Consensus       232 ~V~~~p  237 (238)
                      .|..+|
T Consensus       285 ~V~~~P  290 (290)
T 2o26_X          285 KVVEKG  290 (290)
T ss_dssp             CC----
T ss_pred             EEEeCC
Confidence            998876

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=150.59  Aligned_cols=180  Identities=23%  Similarity=0.381  Sum_probs=122.5

Q ss_pred             cccee-ccCceeEEEecCCEEEEeE-EecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEe
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCV-VNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      .|.|. ..+..+.+.+|+++.|.|. +..                          .|. +.+.|++++..+....     
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~--------------------------~p~~~~v~W~~~~~~~~~~~-----   55 (201)
T 3s97_C            7 LDPFPPEERPEVRVKEGKGMVLLCDPPYH--------------------------FPDDLSYRWLLNEFPVFITM-----   55 (201)
T ss_dssp             ECCCCSSCCCCEEEETTCCEEECCCCCSE--------------------------ESSCCEEEEEESSTTCBCCC-----
T ss_pred             CCccCcCCCceEEEECCCCEEEecccccc--------------------------CCCceEEEEEECCceeeeee-----
Confidence            34444 5568899999999999999 532                          235 6799999876643211     


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce----eeEEEEEc-------CCcccccccCCceeecCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ----MAFLEVVI-------PPDISSEETSGDMMVPEG  153 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~l~v~~-------~~~~~~~~~~~~~~~~~g  153 (238)
                        +.+....   ....+|.|.+++.+|+|.|+|.+.+......    ...+.+..       +|.+...  .....+..|
T Consensus        56 --~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~g  128 (201)
T 3s97_C           56 --DKRRFVS---QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ--FKDVYALMG  128 (201)
T ss_dssp             --SSSEEEC---TTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEE--CCCEEEETT
T ss_pred             --CCCeEEE---cCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEec--CCceEEecC
Confidence              1111111   1122799999999999999999976432111    12233321       1222221  235678899


Q ss_pred             CcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       154 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.+.|.|.+.+.|.|.+.|+++ +..+..       .......+..|.|.++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus       129 ~~~~l~C~~~g~p~p~v~W~~~-~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  199 (201)
T 3s97_C          129 QNVTLECFALGNPVPDIRWRKV-LEPMPS-------TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYV  199 (201)
T ss_dssp             CCEEEEEEEEEESCCEEEEEET-TBCCCT-------TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CcEEEEEEccCCCCCceEEEeC-CCcCCC-------ceeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEE
Confidence            9999999999999999999994 433321       11222345689999999999999999999999944 77888877


Q ss_pred             E
Q psy7941         234 H  234 (238)
Q Consensus       234 ~  234 (238)
                      +
T Consensus       200 ~  200 (201)
T 3s97_C          200 Q  200 (201)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.91  E-value=4.4e-23  Score=162.73  Aligned_cols=180  Identities=20%  Similarity=0.411  Sum_probs=129.5

Q ss_pred             ccceeccC---ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           8 EPDFLYPL---ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         8 ~p~~~~~~---~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      +|.+..+.   ....+.+|+++.|.|.+.                          +.|.+.+.|++++..+...      
T Consensus       219 ~p~~~~~~~~~~~~~~~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~------  266 (404)
T 3p3y_A          219 TPSFMYPQGTASSQMVLRGMDLLLECIAS--------------------------GVPTPDIAWYKKGGDLPSD------  266 (404)
T ss_dssp             CCCBSSSCSSEEEEEEETTSCEEEECCBC--------------------------CSSCCEEEEEETTBCCCTT------
T ss_pred             CCccccccCCCCCceEecCCCEEEEEEEC--------------------------CCCCCcEEEEECCEECCCC------
Confidence            45554432   456788999999999874                          3456789999987654211      


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                          ......   ...+|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+..  .+....+.+|+.+.|.|.+.
T Consensus       267 ----~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--~~~~~~v~~g~~~~l~C~~~  337 (404)
T 3p3y_A          267 ----KAKFEN---FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD--EPKNLILAPGEDGRLVCRAN  337 (404)
T ss_dssp             ----TEEEEG---GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE--CCCCEEECTTCCEEEECEEE
T ss_pred             ----cccccc---cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeec--cCCcceeecCCcEEEEEEcc
Confidence                111111   11289999999999999999998753 344556677777766543  24456788999999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.|.|.+.|++ ++..+....    ........++.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus       338 g~p~p~v~W~~-~g~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  402 (404)
T 3p3y_A          338 GNPKPTVQWMV-NGEPLQSAP----PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL-LANAFVSVL  402 (404)
T ss_dssp             EESCCEEEEEE-TTEEGGGSC----CCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             ccCCCceEEEE-CCEecCCCC----CCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcE-EEEEEEEEE
Confidence            99999999999 555443211    111223345689999999999999999999999944 777777775

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.91  E-value=1.1e-22  Score=143.72  Aligned_cols=167  Identities=17%  Similarity=0.220  Sum_probs=115.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.. .+.+|+++.|.|.+..                           +.+.+.|+|++...        .. 
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~---------------------------~~~~~~W~k~g~~~--------~~-   49 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP---------------------------GVDLYRLEKLSSSR--------YQ-   49 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST---------------------------TCSEEEEEETTTCC--------EE-
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC---------------------------CCCEEEEEECCccc--------cC-
Confidence            46677766664 7899999999999752                           24579999986540        00 


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                                 ....|.|.+++.+|+|.|+|.+.+...   .+..+.|.|..   +|.+...  + ...+.+|+.+.|.|
T Consensus        50 -----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~--p-~~~v~~G~~v~l~C  115 (184)
T 2gi7_A           50 -----------DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQ--P-GPAVSSGGDVTLQC  115 (184)
T ss_dssp             -----------SSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEE--C-CCSSCCTTCEEEEE
T ss_pred             -----------cccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeC--C-CceecCCCcEEEEE
Confidence                       112899999999999999999987532   23445666653   2223221  2 34567899999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEE
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHV  233 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V  233 (238)
                      .+.+.| +.+.|++++ ..+...       .........|.|.++..+|.|.|+|.|.|..+.    ..+..+.|.|
T Consensus       116 ~~~~~~-~~~~w~k~g-~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          116 QTRYGF-DQFALYKEG-DPAPYK-------NPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             ECSSCC-CEEEEEECC-CCTTSC-------CCCEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             EcCCCC-cEEEEEECC-CcCcce-------ecCCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            987654 699999954 332210       011234557999999999999999999997642    3466666655

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=144.15  Aligned_cols=156  Identities=15%  Similarity=0.317  Sum_probs=108.1

Q ss_pred             CCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------
Q psy7941          62 SAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------  135 (238)
Q Consensus        62 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------  135 (238)
                      |.+.+.|++++..+.         ...++.+... ....+|.|.+++.+|+|.|+|.+.+... .....+.+.+      
T Consensus        31 p~~~i~W~~~g~~i~---------~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~~-~~~~~~~l~v~~~~~~   99 (212)
T 2r15_A           31 EDLKVNWSHNGSAIR---------YSDRVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEA   99 (212)
T ss_dssp             SSCEEEEEETTEECC---------CCSSEEEEEE-TTEEEEEEESCCGGGCEEEEEEEECSSC-EEEEEEEECHHHHHHH
T ss_pred             CCceEEEEECCEEcc---------CCCeEEEEEe-CCEEEEEECCCCcccCEEEEEEEecCCc-ceEEEEEEEEeeccch
Confidence            477899999876543         2344444332 2344799999999999999999987433 2333344432      


Q ss_pred             ----------------CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe---
Q psy7941         136 ----------------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE---  196 (238)
Q Consensus       136 ----------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~---  196 (238)
                                      .|.+.. ..+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....     .......   
T Consensus       100 ~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~-----~~~~~~~~~~  172 (212)
T 2r15_A          100 YAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTD-----HCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEE-BCCSEEEEETTCCEEEEEEEECSSCCEEEEEE-TTEEECCCS-----SEEEEEETTT
T ss_pred             hhhccccCcccccccCCCcccc-cCCCcEEEccCCeEEEEEEEcCCCCceEEEEE-CCeECccCC-----CEEEEEcCCC
Confidence                            122211 12344678899999999999999999999999 555443211     1111111   


Q ss_pred             eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         197 SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       197 ~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      ...|.|.++..+|.|.|+|.|.|..|. .+.++.|.|..|
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P  211 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEcc
Confidence            237999999999999999999999994 488888888754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.90  E-value=9.5e-23  Score=147.28  Aligned_cols=182  Identities=22%  Similarity=0.330  Sum_probs=119.5

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeee---eeeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAI---HEHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~---~~~~   83 (238)
                      |.+..++ .+.+.+|+++.|.|.+.+                          .+.+.+.|+|..  .......   ....
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~   54 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDK--------------------------LSDVYVHWYQQKAGQAPVLVIYEDNRRP   54 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSS--------------------------TTTSCEEEEEECTTSCCEEEEBTTTBCC
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCC--------------------------CCCceEEEEEECCCCCcEEEEEECCccC
Confidence            4566777 889999999999999852                          345679999942  2111100   0011


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVV----IPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~  155 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+...    ....+.|.|.    .+|.+...  +....+..|+.
T Consensus        55 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g~~  131 (213)
T 3mj8_L           55 SGIPDHFSGSN-SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLF--PPSSEELKTNQ  131 (213)
T ss_dssp             TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEE--CCCHHHHTTTE
T ss_pred             CCccCcEEEEe-cCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEcc--CCCcccccCCc
Confidence            11245676655 45567999999999999999999977543    2445677887    44444332  12223447999


Q ss_pred             EEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         156 AKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       156 ~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.|.|.+.|. |+ +.+.|++ ++..+.....   ....... ....+.|.|..+..+|.|.|+|.|.|..+
T Consensus       132 v~l~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3mj8_L          132 ATLVCMINGFYPADVAVTWEA-DGTPITQGVKTTQPSKSDSK-YMATSYLTMTADAWKSRNTFICKVTHGGN  201 (213)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEEETTE-EEEEEEEEEESHHHHSCSCEEEEEEETTE
T ss_pred             EEEEEEeeceeCCCeEEEEEc-CCcccCCCcccCCcCccCCc-EEEEEEEEEeHHHcCCCCEEEEEEEECCc
Confidence            9999999885 44 3999999 5554432100   0000111 12234688999999999999999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.90  E-value=1.5e-24  Score=168.14  Aligned_cols=184  Identities=16%  Similarity=0.221  Sum_probs=131.7

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      +.+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..........   
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g--------------------------~p~p~i~W~~~~~~~~~~~~~~---  206 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEG--------------------------RGLEQAGWILTELEQSATVMKS---  206 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEEC--------------------------SSCCCCCEEESCCCSSEEECCC---
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEec--------------------------CCCCEEEEEcCCceeecccccc---
Confidence            45788888888999999999999999853                          3466799999876543221100   


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                               ......+|.|.+++.+|+| .|+|.+.+.. .....+.+.|..+|.+ .     .....+|+.+.|.|.+.
T Consensus       207 ---------~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~-----~~~~~~g~~v~l~C~~~  271 (347)
T 2ifg_A          207 ---------GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-Q-----LHTAVEMHHWCIPFSVD  271 (347)
T ss_dssp             ---------CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-E-----ECCCEESSSEEEEEEEE
T ss_pred             ---------eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-e-----eccCccCceEEEEEEee
Confidence                     1223448999999999999 9999997753 3344445556555554 1     11245689999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcc------eEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQK------VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.|.+.|++ ++..+.....  ....      ......+.|.|.++..+|+|.|+|.|.|..|. .++++.|.|..+|
T Consensus       272 g~P~p~i~W~~-~g~~l~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P  347 (347)
T 2ifg_A          272 GQPAPSLRWLF-NGSVLNETSF--IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP  347 (347)
T ss_dssp             EESCCEEEEEE-TTEECCCCSS--EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred             ecCCCcEEEEe-CCEECCCCcc--eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence            99999999999 5554432110  0000      00122457999999999999999999999994 4888999988877

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.90  E-value=8.6e-23  Score=152.57  Aligned_cols=199  Identities=19%  Similarity=0.300  Sum_probs=122.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe---
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI---   84 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---   84 (238)
                      .+.+..++..+.+.+|+++.|.|.+....+                       .+.+.+.|++.+............   
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~-----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~   61 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEE-----------------------KHVDRVDWLFSKDKDDASEYVLFYYSN   61 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSC-----------------------CCEEEEEEEEESSSTTCCEEEEEEETT
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCC-----------------------CceEEEEEEEeCCCCCceEEEEEEcCC
Confidence            456677888899999999999999863222                       335679999965432111000000   


Q ss_pred             ------ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941          85 ------TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        85 ------~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~  156 (238)
                            ....|+.+.. ......+|.|.+++.+|+|.|+|.+.+... ......+.+.+.+.     .+....+..|+.+
T Consensus        62 ~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v  136 (268)
T 3mj6_A           62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTT  136 (268)
T ss_dssp             EEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCE
T ss_pred             CcccCccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcE
Confidence                  0124444432 122445899999999999999999976532 22333344433222     2335678899999


Q ss_pred             EEEEEE---ccccCCeEEEEeCCCeee-----E----------eecCCCCCcceEE-----EeeceEEEEEeecCCCeEE
Q psy7941         157 KLVCKA---KGYPTPKITWRREDNKEI-----I----------VRSNPPSSQKVFS-----VESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       157 ~l~C~~---~~~p~~~~~W~~~~~~~~-----~----------~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y  213 (238)
                      .|.|.+   .+.|.+.+.|+++++...     .          .............     .....|.|.++..+|.|.|
T Consensus       137 ~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y  216 (268)
T 3mj6_A          137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY  216 (268)
T ss_dssp             EECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEE
Confidence            999999   567899999998443211     0          0000000011111     2345899999999999999


Q ss_pred             EEEeeeCCCCCccceEEEEEEe
Q psy7941         214 QCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       214 ~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +|.|.|..| ..+.++.|.|..
T Consensus       217 ~C~a~n~~g-~~~~~~~l~V~~  237 (268)
T 3mj6_A          217 TCSIYVGKL-ESRKTIVLHVVQ  237 (268)
T ss_dssp             EEEEEETTE-EEEEEEEEEEEC
T ss_pred             EEEEEcCCc-eEEEEEEEEEEc
Confidence            999999888 447888888843

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=159.95  Aligned_cols=198  Identities=15%  Similarity=0.202  Sum_probs=131.3

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeee----------------eecCCeEEec----cCCCCceEEEEeCCceeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTGGSIVFP----TDSSAMKVAWIKADTKAVLAI   79 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~~~W~~~~~~~~~~~   79 (238)
                      +...|.+.|.|.+.+.........+...+                ...++.+.+.    .+.|.+.++|++++..+....
T Consensus        81 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~  160 (308)
T 4fom_A           81 IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT  160 (308)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEE
T ss_pred             CCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccc
Confidence            56789999999998764433333222221                1234555544    357899999999877653221


Q ss_pred             eeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cc--eeeEEEEEcCCcccccccCCceeecCCCcE
Q psy7941          80 HEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TK--QMAFLEVVIPPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~  156 (238)
                      .   ...........      .|.|.++..+|.|.|+|.+.+... ..  ..+.|.|..+|.+.... .....+..|+.+
T Consensus       161 ~---~~~~~~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~-~~~~~~~~g~~v  230 (308)
T 4fom_A          161 T---SFPNETATIIS------QYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTG-YDGNWFVGRKGV  230 (308)
T ss_dssp             E---ECTTSCEEEEE------EEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBC-CCSCEETTCCSC
T ss_pred             c---eeeeecccccc------cceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcc-cceeeeeccccE
Confidence            1   11122222222      799999999999999999987532 22  23345555556544322 233456778999


Q ss_pred             EEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         157 KLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       157 ~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .|.|.+.|.|.| .+.|+++++. +...        .....+..|.|..+..+|+|.|+|.|.|..|.. +.++.|.|..
T Consensus       231 ~l~C~~~g~P~p~~v~W~k~~~~-~~~~--------~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~~  300 (308)
T 4fom_A          231 NLKCNADANPPPFKSVWSRLDGQ-WPDG--------LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQR-SDQKVIYISD  300 (308)
T ss_dssp             EEECCEEEESCEEEEECCBSSSC-CCSS--------CBCSTTEEECCSCCCSCCCSEEEEEEEETTEEE-EEEEECCEEC
T ss_pred             EEEEEEecCCCCcEEEEEECCeE-CCCc--------EEEcCCeEEEECCCChhhCEEEEEEEEeCCCcE-EEEEEEEEEc
Confidence            999999999988 7999995433 2211        111123345678899999999999999999954 8889999999


Q ss_pred             ec
Q psy7941         236 TY  237 (238)
Q Consensus       236 ~p  237 (238)
                      +|
T Consensus       301 ~P  302 (308)
T 4fom_A          301 PP  302 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            88

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=6.9e-22  Score=139.51  Aligned_cols=168  Identities=18%  Similarity=0.387  Sum_probs=116.5

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      ..+.+|+++.|.|.+....                        .|...+.|++++..+..         ....      .
T Consensus         8 ~~v~~G~~v~l~C~~~~~~------------------------~p~~~~~W~k~~~~l~~---------~~~~------~   48 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSA------------------------TEVTGHRWLKGGVVLKE---------DALP------G   48 (184)
T ss_dssp             EEEEETTEEEEEEEEESCS------------------------SCCCEEEEESSSEEEEC---------TTCC------C
T ss_pred             EEEecCCCEEEEEECCCCC------------------------CCceEEEEEeCCEEeec---------cccc------C
Confidence            4678999999999986421                        12337999997754321         1111      1


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc-CCeEEEEe--
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRR--  174 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~--  174 (238)
                      ....|.|.  +.+|+|.|+|.+.+.  ....+.|.|..+|.+....  ....+.+|+.+.|.|.+.|.| .+.+.|++  
T Consensus        49 ~~~~l~i~--~~~d~G~Y~C~~~n~--~~~~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~  122 (184)
T 3b5h_A           49 QKTEFKVD--SDDQWGEYSCVFLPE--PMGTANIQLHGPPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKIT  122 (184)
T ss_dssp             SEEEEEEC--GGGCCEEEEEEEEST--TSCEEEEEECCSCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred             CcEEEEEe--chhhCeEEEEEEECC--cCcEEEEEEecCCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcC
Confidence            12256665  689999999999873  3466778888888776432  445688999999999999999 78999999  


Q ss_pred             -CCCeeeEeecCCCCCcceEEEe---eceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         175 -EDNKEIIVRSNPPSSQKVFSVE---SEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       175 -~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                       ++...+...    .........   ...|.|.++. .+|.|.|+|.|.|..|.. ...+.|.|..
T Consensus       123 ~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  183 (184)
T 3b5h_A          123 DSEDKALMNG----SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVRS  183 (184)
T ss_dssp             SSSCEECCTT----GGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC-
T ss_pred             CCCCEEeecC----CCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcc-eEEEEEEEec
Confidence             333322110    001112211   2379999999 899999999999999954 6778888764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.90  E-value=9.6e-23  Score=153.83  Aligned_cols=185  Identities=22%  Similarity=0.366  Sum_probs=126.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...+..+.+.+|+++.|.|.+.+..                         +...+.|++.++....        ...++
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~-------------------------~~~~v~W~~~~~~~~~--------~~~~~  138 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPA-------------------------LKDSVSLMREGGRQVL--------RKTVY  138 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGG-------------------------GGGSEEEEEGGGEECC--------TTCCE
T ss_pred             eecccceEEEecCCceEeEEEccCCC-------------------------cceEEEEEecCCeecC--------CCccE
Confidence            56667888999999999999986311                         1224999986554332        23344


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEE----cCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ......    +|.|.+++.+|+|.|+|.+.+..  .....+.+.|.    .+|.+...  +....+.+|+.+.|.|.+.+
T Consensus       139 ~~~~~~----~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~~~~  212 (289)
T 3ejj_X          139 FFSPWR----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLE--PSKLVRIRGEAAQIVCSATN  212 (289)
T ss_dssp             EEETTT----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEE--SSSEECCSSSCEEEEEEEEE
T ss_pred             EECCCC----CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEec--CCceEEEeCCcEEEEEEeCC
Confidence            433222    79999999999999999997432  23445667777    34444332  34455678999999999988


Q ss_pred             -ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         165 -YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       165 -~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                       .|.+.+.|++ ++..+........ ........+.|.|.++..+|.|.|+|.|.|..|.. ++++.|.+..++
T Consensus       213 ~~p~~~i~W~~-~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~~~~~  283 (289)
T 3ejj_X          213 AEVGFNVILKR-GDTKLEIPLNSDF-QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQVVESH  283 (289)
T ss_dssp             SSSCCEEEEEE-TTEECCCCEEEEE-CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEECC---
T ss_pred             CCCceEEEEEE-CCEEeeccCCccc-ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEEEecc
Confidence             7899999999 4443321110000 01112234579999999999999999999999944 888888877654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.90  E-value=2e-22  Score=158.90  Aligned_cols=187  Identities=24%  Similarity=0.403  Sum_probs=135.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+...      ...
T Consensus       121 p~~~~~~~~~~~~~~G~~v~l~C~~~~--------------------------~p~~~v~W~~~~~~~~~~------~~~  168 (403)
T 3laf_A          121 PLRFLSQTESITAFMGDTVLLKCEVIG--------------------------DPMPTIHWQKNQQDLNPI------PGD  168 (403)
T ss_dssp             CCEECSCCCCEEEETTSCEEECCCEEC--------------------------SSCCEEEEEESSSBCCCC------TTC
T ss_pred             CCccccCCCcEEEEcCCeEEEEEEEcc--------------------------cCCCeEEEEECCEecccc------CCc
Confidence            567777788889999999999999853                          346679999987654211      112


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCccc----ccccCCceeecCCCcEEEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDIS----SEETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~----~~~~~~~~~~~~g~~~~l~C~  161 (238)
                      .++.....    .+|.|.+++.+|+|.|+|.+.+...  ....+.+.|...|...    ....+....+.+|+.+.|.|.
T Consensus       169 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~  244 (403)
T 3laf_A          169 SRVVVLPS----GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC  244 (403)
T ss_dssp             CSEEECTT----SCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCE
T ss_pred             eEEEEcCC----ceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEE
Confidence            22222111    2799999999999999999987533  2345667777666432    222344567789999999999


Q ss_pred             EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         162 AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       162 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +.+.|.+.+.|++ ++..+...     ........+..|.|.++..+|.|.|+|.|.|..| ..+.++.|.|..+|
T Consensus       245 ~~~~p~~~~~W~~-~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p  313 (403)
T 3laf_A          245 VSGYPPPSFTWLR-GEEVIQLR-----SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPP  313 (403)
T ss_dssp             EEEESCCEEEEEE-TTEECCCS-----SSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEEEE
T ss_pred             cCCCCCCeEEEEE-CCeeccCC-----CceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC-ceEEEEEEEEECCC
Confidence            9999999999999 55443221     1222334456899999999999999999999998 44888889998876

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.90  E-value=1e-21  Score=147.58  Aligned_cols=201  Identities=18%  Similarity=0.254  Sum_probs=125.4

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-e
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-E   81 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~   81 (238)
                      ..+.+...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++...    ..... .
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~i~W~r~~~~~~~~~~~~~~~~   64 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQ--------------------------DVSTAVAWYQQKPGKAPKLLIYSASF   64 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTE
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCC--------------------------CCCCcEEEEEECCCCCCEEEEEEcCc
Confidence            3567788899999999999999999853                          335679999965311    11100 0


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc-------------ccccccCC
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD-------------ISSEETSG  146 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~-------------~~~~~~~~  146 (238)
                      .......|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..++.             +.. ..+.
T Consensus        65 ~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~-~~p~  142 (276)
T 3auv_A           65 LYSGVPSRFSGSG-SGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQL-VESG  142 (276)
T ss_dssp             ECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEE-EEEC
T ss_pred             cCCCCCCCEEEec-cCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEE-ECCC
Confidence            0011245777654 34566999999999999999999976532  22335666665431             211 1234


Q ss_pred             ceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Eee-c--------CCCCCcceEEEe-----eceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVR-S--------NPPSSQKVFSVE-----SEVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~-~--------~~~~~~~~~~~~-----~~~l~i~~~~~  207 (238)
                      ...+.+|+.+.|.|.+.+.|  .+.+.|++++ +...  ... .        ......+.....     ...|.|.++..
T Consensus       143 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  222 (276)
T 3auv_A          143 GGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA  222 (276)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh
Confidence            56788999999999998865  5899999953 2111  110 0        001112222221     23799999999


Q ss_pred             CCCeEEEEEeeeCC---C-CCccceEEEEEEe
Q psy7941         208 SEMGAYQCIAANGV---P-PTVSKRLMLHVHC  235 (238)
Q Consensus       208 ~d~G~y~C~~~n~~---g-~~~~~~~~l~V~~  235 (238)
                      +|+|.|+|.+.|..   + ........|.|..
T Consensus       223 ~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~  254 (276)
T 3auv_A          223 EDTAVYYCARFVFFLPYAMDYWGQGTLVTVSS  254 (276)
T ss_dssp             GGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred             hHCEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence            99999999999973   2 1223345566654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.90  E-value=3.6e-21  Score=137.88  Aligned_cols=185  Identities=14%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.-...+|.|...+. ..+.+|++++|.|.+..                           +.+.+.|+|++..+......
T Consensus         2 v~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~   53 (201)
T 1nkr_A            2 HEGVHRKPSLLAHPG-PLVKSEETVILQCWSDV---------------------------MFEHFLLHREGMFNDTLRLI   53 (201)
T ss_dssp             -----CCCEEEEESC-SEEETTCCEEEEEEESS---------------------------CCSEEEEEEESSSCEEEEEE
T ss_pred             ccCcCCCCeEEEEcC-CccCCCCcEEEEEeccC---------------------------CCCEEEEEECCCcCCcceee
Confidence            333345677776665 67889999999999852                           24569999987654321100


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC------CcceeeEEEEEcC---CcccccccCCceeecC
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP------MTKQMAFLEVVIP---PDISSEETSGDMMVPE  152 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~  152 (238)
                            .++   ........|.|.+++.+|+|.|+|.+.+..      ..+..+.|.|...   |.+...  +. ..+.+
T Consensus        54 ------~~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~--p~-~~v~~  121 (201)
T 1nkr_A           54 ------GEH---HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ--PG-PTVLA  121 (201)
T ss_dssp             ------CEE---ETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEE--SC-SEECT
T ss_pred             ------eec---CCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecC--CC-CccCC
Confidence                  000   011122389999999999999999996531      1234556777643   233221  22 35789


Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE-EEeeceEEEEEeecCCCeEEEEEeeeCC----CCCccc
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF-SVESEVLSLTKVTRSEMGAYQCIAANGV----PPTVSK  227 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~~~~  227 (238)
                      |+.+.|.|.+.+ +.+.+.|++++.........    .... ......|.|.++.  |+|.|+|.|.+..    ....+.
T Consensus       122 G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~----~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~  194 (201)
T 1nkr_A          122 GENVTLSCSSRS-SYDMYHLSREGEAHERRLPA----GPKVNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSD  194 (201)
T ss_dssp             TCEEEEEEEESS-CCSEEEEEETTCSSCEEEEC----EEEETTEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCC
T ss_pred             CCeEEEEEeCCC-CCceEEEEECCcccCccccc----ccccCCceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCC
Confidence            999999999886 56799999954332211100    0000 0124579999998  9999999999653    224466


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      .+.|.|
T Consensus       195 ~~~l~V  200 (201)
T 1nkr_A          195 PLLVSV  200 (201)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            777765

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.90  E-value=1.1e-22  Score=147.42  Aligned_cols=180  Identities=18%  Similarity=0.163  Sum_probs=120.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+. ..+.+|++++|.|.+..                           +.+.+.|+|++..+....       
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~---------------------------~~~~~~W~k~g~~~~~~~-------   52 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR---------------------------EAYLTQLMIIKNSTYREI-------   52 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT---------------------------TCSEEEEEEEETTEEEEC-------
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC---------------------------CCCEEEEEECCCcccccc-------
Confidence            5677777776 47899999999999852                           245699999866542210       


Q ss_pred             CccEEEEEcCCCeE--EEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEE
Q psy7941          87 NARLSVTHNDANTW--TLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        87 ~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                       .+.   .......  +|.|.+++.+|+|.|+|.+.+...   .+....|.|..   +|.+..  .+ ...+.+|+.+.|
T Consensus        53 -~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~--~p-~~~v~~G~~v~L  125 (218)
T 1uct_A           53 -GRR---LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSA--DR-GLVLMPGENISL  125 (218)
T ss_dssp             -SEE---CC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEE--SS-CSEECTTCCCEE
T ss_pred             -ccc---CCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEe--CC-CCccCCCCCEEE
Confidence             000   0011122  799999999999999999987532   23345566664   222322  12 346789999999


Q ss_pred             EEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CCccceEEEEEE
Q psy7941         159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PTVSKRLMLHVH  234 (238)
Q Consensus       159 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~~~~~~~l~V~  234 (238)
                      .|...+.|.+.+.|++++ ..+..       ..........|.|.++..+|+|.|+|.|.|..+    ...+..+.|.|.
T Consensus       126 ~C~~~~~~~~~~~W~k~g-~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (218)
T 1uct_A          126 TCSSAHIPFDRFSLAKEG-ELSLP-------QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT  197 (218)
T ss_dssp             EEECSSSCCSEEEEEETT-CSSCC-------SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred             EEeCCCCCCCEEEEEECC-Ccccc-------cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEe
Confidence            997767778899999954 33321       011122345799999999999999999998642    345778888887


Q ss_pred             ee
Q psy7941         235 CT  236 (238)
Q Consensus       235 ~~  236 (238)
                      .+
T Consensus       198 g~  199 (218)
T 1uct_A          198 DS  199 (218)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.89  E-value=3.1e-22  Score=145.27  Aligned_cols=196  Identities=23%  Similarity=0.321  Sum_probs=120.1

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee---E----eec
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH---V----ITN   86 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~---~----~~~   86 (238)
                      .+..+.+..|+++.|.|.+.......                       ...+.|+|+++.........   .    ...
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~   63 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTER-----------------------VSQVTWQRLDGTVVAAFHPSFGVDFPNSQFS   63 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCE-----------------------EEEEEEECTTSCEEEEEETTTEEECCCTTSC
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCc-----------------------eeEEEEEECCCcceEEEecccceeecccccc
Confidence            35568899999999999996533221                       12489999876554322110   0    011


Q ss_pred             CccEEEEE------cCCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEcCCcccccccCCceeecCCCcEEE
Q psy7941          87 NARLSVTH------NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVIPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        87 ~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ..+.....      .....++|.|.+++.+|+|.|+|.+.+......  ...+.+..++.....  ........++.+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  141 (225)
T 4fmk_A           64 KDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE--AQEVTIGPQSVAVA  141 (225)
T ss_dssp             TTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE--ECCBCCSSSCEEEE
T ss_pred             ccceeeeccccccccccCcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeec--ccceeecceeeeee
Confidence            22222211      122456899999999999999999976433222  233445555544332  22234556677777


Q ss_pred             EEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEe
Q psy7941         159 VCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHC  235 (238)
Q Consensus       159 ~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~  235 (238)
                      .|.+ .+.|.+.+.|+++++............... ....+.|.|..+..+|.|.|+|.|.|..|.. .+.+++|.|++
T Consensus       142 ~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          142 RCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGT-VTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTC-EEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             eeeecCCCCCCEEEEEECCccccCCcceEEecCCC-EEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            7765 558888999998655443322211111111 1123469999999999999999999998743 35567776654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.89  E-value=2.1e-22  Score=158.44  Aligned_cols=174  Identities=20%  Similarity=0.350  Sum_probs=126.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      +....+.+|+++.|.|.+.+                          .|.+.+.|++++..+...       ...++... 
T Consensus       219 ~~~~~~~~G~~v~l~C~~~g--------------------------~p~~~i~W~~~g~~~~~~-------~~~~~~~~-  264 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYGS--------------------------NPMGYPNYFKNGKDVNGN-------PEDRITRH-  264 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEEC--------------------------SSCCCCEEEETTEECCCC-------TTSSEESC-
T ss_pred             CCceEEECCCcEEEEEEecc--------------------------CCCCeEEEEECCEEcCCC-------CceeEEEE-
Confidence            56678999999999999853                          346679999987654221       11222211 


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCc-ce-eeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQ-MAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW  172 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~-~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  172 (238)
                      ......+|.|.+++.+|+|.|+|.+.+.... .. .+.|.|..+|.+..... ....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus       265 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W  343 (395)
T 1bih_A          265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE-KVIVVKQGQDVTIPCKVTGLPAPNVVW  343 (395)
T ss_dssp             SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCC-SEEEECTTSCEEEECEEEEESCCCCEE
T ss_pred             ecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCC-cceEecCCCeEEEEEEECcccCCeeEE
Confidence            1112238999999999999999999875433 22 66788887777654321 226788999999999999999999999


Q ss_pred             EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      ++ ++..+..       .. ....++.|.|.++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus       344 ~~-~g~~~~~-------~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  394 (395)
T 1bih_A          344 SH-NAKPLSG-------GR-ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV  394 (395)
T ss_dssp             EE-TTEECCS-------SS-EEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EE-CCEECCC-------Cc-eEEECCEEEEeeCCcccCEEEEEEEEccCCCc-eEEEEEEE
Confidence            99 5554421       11 22344589999999999999999999999944 67777766

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.89  E-value=2.1e-22  Score=157.85  Aligned_cols=174  Identities=21%  Similarity=0.350  Sum_probs=129.1

Q ss_pred             ccceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+.. .+....+.+|+++.|.|.+.+                          .|.+.+.|++++..+..         
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~g--------------------------~p~~~i~W~~~~~~~~~---------  250 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFAFG--------------------------NPVPQIKWRKLDGSQTS---------  250 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEE--------------------------ESCCEEEEEECCSCCSC---------
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEEcc--------------------------CCCCEEEEEECCccccc---------
Confidence            455543 356788999999999999853                          34567999998765321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                        ++     ......|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+...  .....+..|+.+.|.|.+.|.
T Consensus       251 --~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~  321 (382)
T 1cs6_A          251 --KW-----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGK  321 (382)
T ss_dssp             --CC-----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC--CCCEEEETTCCEEEECEEEEE
T ss_pred             --EE-----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccC--CCccEEcCCCeEEEEEEeeee
Confidence              00     1112289999999999999999997753 3444566777777665432  344678899999999999999


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |.|.+.|++ ++..+...      .. ....++.|.|.++..+|.|.|+|.|.|..|.. ..++.|.|.
T Consensus       322 p~p~v~W~~-~g~~~~~~------~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  381 (382)
T 1cs6_A          322 PRPAVRWLR-DGQPLASQ------NR-IEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTVQ  381 (382)
T ss_dssp             SCCEEEEEE-TTEECCCC------SS-EEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             cCCEEEEEE-CCEECCCC------ce-EEEECCEEEECcCCcccCEEEEEEEEeCCCeE-EEEEEEEEe
Confidence            999999999 55544321      11 22345689999999999999999999999944 778888875

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=154.68  Aligned_cols=193  Identities=15%  Similarity=0.307  Sum_probs=126.8

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee------eEe--ecCc
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE------HVI--TNNA   88 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~------~~~--~~~~   88 (238)
                      .+.+.+|+++.|.|.+...                         .+.+.++|+|++.........      ...  ....
T Consensus         8 ~vtv~~G~~v~L~C~v~~~-------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVN-------------------------ETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQG   62 (308)
T ss_dssp             SCEEETTSCEEECCBCCCS-------------------------SCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTT
T ss_pred             EeEEEcCCcEEEEEEecCC-------------------------CCCcEEEEEECCCCCCceEEEecCCCCceecCcccc
Confidence            5788999999999998531                         224569999976543221110      001  1134


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGY  165 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~  165 (238)
                      |+..........+|.|.+++.+|+|.|+|.+.+...  ....+.+.+...+.+.....+.......|+.+.|.|.+ .|.
T Consensus        63 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~  142 (308)
T 4fom_A           63 RVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGK  142 (308)
T ss_dssp             TEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEB
T ss_pred             eEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCc
Confidence            454443334556899999999999999999977533  33445566666666554444445556678899999986 679


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY  237 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p  237 (238)
                      |.+.+.|++++.. +..........  .....+.|.|..+..+|.|.|+|.|.|..|.. .+.++.|.|..+|
T Consensus       143 P~~~i~W~~~~~~-~~~~~~~~~~~--~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P  212 (308)
T 4fom_A          143 PVAHIDWEGDLGE-MESTTTSFPNE--TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAP  212 (308)
T ss_dssp             SCCEEEECCCSSB-CCEEEEECTTS--CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEE
T ss_pred             CCceEEEEECCcc-cccccceeeee--cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCC
Confidence            9999999995443 32211111111  11223368899999999999999999988743 3456677777665

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=154.20  Aligned_cols=180  Identities=18%  Similarity=0.315  Sum_probs=120.1

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.+...+....+..|+++.|.|.+..                          .|.+.+.|++++..+....      ...
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g--------------------------~p~~~v~W~k~~~~~~~~~------~~~  156 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASG--------------------------NPDPEITWFKDFLPVDPSA------SNG  156 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEEC--------------------------SSCCEEEEEETTEECCGGG------GTT
T ss_pred             CeeecCCccEEEeCCCeEEEEEECcc--------------------------CCCCeEEEEECCEECcCCC------Ccc
Confidence            67777788888999999999999853                          3466899999876542210      111


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEEEc---CCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                      ++.....    ..|.|.+++.+|+|.|+|.+.+......  .+.+.|..   +|.+..  .+....+.+|+.+.|.|.+.
T Consensus       157 ~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~--~~~~~~v~~G~~v~l~C~~~  230 (304)
T 2yd9_A          157 RIKQLRS----GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI--LPMSHEIMPGGNVNITCVAV  230 (304)
T ss_dssp             SEEECTT----SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEE--CCCCBCCCTTCCEEEEEEEE
T ss_pred             eEEeCCC----eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEe--cCCceEEcCCCeEEEEEEEe
Confidence            2222111    2899999999999999999987643222  24566653   333332  23345678899999999999


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.|.+.|++ ++..+.....       .  ..+.+.+.....+|+|.|+|.|.|..|.. +.++.|.|..+|
T Consensus       231 g~p~p~v~W~~-~~~~l~~~~~-------~--~~~~~~L~i~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  293 (304)
T 2yd9_A          231 GSPMPYVKWMQ-GAEDLTPEDD-------M--PVGRNVLELTDVKDSANYTCVAMSSLGVI-EAVAQITVKSLP  293 (304)
T ss_dssp             EESCCEEEEEE-TTEECSCSSS-------C--CBSEEEEEECSCCSCEEEEEEEEETTEEE-EEEEEEC-----
T ss_pred             eeCCCEEEEEE-CCEECCCccc-------c--cCCcEEEEEcccccCEEEEEEEEeCCCcE-EEEEEEEEecCc
Confidence            99999999999 5554432110       0  12233333344479999999999999954 788889888765

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.89  E-value=9.7e-22  Score=141.96  Aligned_cols=184  Identities=20%  Similarity=0.239  Sum_probs=117.1

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---eeeee--eeeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---AVLAI--HEHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~--~~~~   83 (238)
                      |.+..++..+.+.+|+++.|.|.+...                          |.+.+.|+|....   .....  ....
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~   55 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQD--------------------------ISNYLNWYQQKPGKAPKLLIYYTNKLA   55 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCC--------------------------cCceEEEEEECCCCCcEEEEEEcCcCC
Confidence            567777889999999999999999642                          3567999984311   11100  0111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE---cCCcccccccCCceeecCCCcEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV---IPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~---~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.+.|.   .+|.+...  +....+..|+.+.|
T Consensus        56 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~~~~v~l  132 (213)
T 3r06_A           56 DGVPSRFSGSG-SGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF--PPSSEQLGTGSATL  132 (213)
T ss_dssp             TTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE--CCCHHHHTTTEEEE
T ss_pred             CCCCCcEEEec-cCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeee--CCCceecCCCCcEE
Confidence            11245777663 34667999999999999999999976532  2334556663   33433322  22223446778999


Q ss_pred             EEEEccccC--CeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         159 VCKAKGYPT--PKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       159 ~C~~~~~p~--~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.+.+.++  +.+.|++ ++..+...    ................|.+.....+|.|.|+|.|.|...
T Consensus       133 ~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          133 VCFVNNFYPKDINVKWKV-DGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             EEEEEEEBSSCEEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             EEEEeeecCCceEEEEEE-CCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            999988554  3899999 55544321    000010111112223577888888899999999999875

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.89  E-value=1.6e-22  Score=141.81  Aligned_cols=165  Identities=15%  Similarity=0.152  Sum_probs=109.0

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~   94 (238)
                      ..+.+.+|+++.|.|....                        ...+.+.+.|+|++..+..... ...+...+|+.+..
T Consensus         4 ~~v~~~~G~~v~L~c~~~~------------------------~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~   59 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQ------------------------MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA   59 (176)
T ss_dssp             EEEEEETTSCEEECCTTCC------------------------CCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT
T ss_pred             eEEEEEcCCcEEEcCCCCC------------------------cccccccEEEEeCCceeEEEcCCCeecCCCCeEEECC
Confidence            4577889999999994211                        1123557999998754322111 11123356666633


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT  171 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  171 (238)
                      ..    +|.|.+++.+|+|.|+|.+.+....   ...+.|.|..++..+      .+ ...+..+.|.|.+.|.|.|.+.
T Consensus        60 ~g----sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p------~i-~~~~~~v~L~C~~~g~p~p~i~  128 (176)
T 1hng_A           60 NG----DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP------MI-YWECSNATLTCEVLEGTDVELK  128 (176)
T ss_dssp             TS----CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC------EE-EEETTTTEEEEECSSCSSCEEE
T ss_pred             CC----cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC------EE-EecCCcEEEEEEecCCCCcEEE
Confidence            22    6999999999999999999875433   334556666543211      11 1224569999999999999999


Q ss_pred             EEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         172 WRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       172 W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      |++ ++..+...              ..+.+..+..+|.|.|+|.|.|..|.. +....|
T Consensus       129 W~~-~g~~l~~~--------------~~~~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l  172 (176)
T 1hng_A          129 LYQ-GKEHLRSL--------------RQKTMSYQWTNLRAPFKCKAVNRVSQE-SEMEVV  172 (176)
T ss_dssp             EEE-TTEEEEEE--------------SSSEEEEECSCCSSCEEEEEEETTEEE-EEEECC
T ss_pred             EEE-CCEECCCC--------------CcEEEEEEEccCCeEEEEEEEecCCCc-eecccc
Confidence            999 55554321              124556788999999999999999943 444433

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.89  E-value=4e-22  Score=153.22  Aligned_cols=188  Identities=15%  Similarity=0.264  Sum_probs=121.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      ...|..++..+.+.+|+++.|.|.+...                         .|.+.+.|+|++...........-...
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~-------------------------~p~~~v~W~k~~~~~~~~i~~~~~~~~   57 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSL-------------------------IPVGPIQWFRGAGPARELIYNQKEGHF   57 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCC-------------------------CSCCCEEEEESCSTTCEEEEETTSSCC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCc-------------------------CCCceEEEEECCCCCceEEEEcCCCCc
Confidence            4567788999999999999999998532                         145679999987542211110000012


Q ss_pred             ccEEEEEc----CCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941          88 ARLSVTHN----DANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        88 ~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      .|+.....    .....+|.|.+++.+|+|.|+|.+.+....      ...+.|.|..+|.......+ ...+.+|+.+.
T Consensus        58 ~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~  136 (327)
T 2wng_A           58 PRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVS  136 (327)
T ss_dssp             TTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEE
T ss_pred             ceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEE
Confidence            24443221    134558999999999999999999875432      13457888876654332222 35578899999


Q ss_pred             EEEEEccccCC--eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         158 LVCKAKGYPTP--KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       158 l~C~~~~~p~~--~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.|.+.|.|++  .+.|++ ++..+.....   ....... ....+.|.|.....+|.|.|+|.|.|..+.
T Consensus       137 l~C~~~g~p~~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          137 FTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVS-YSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCCEEEEEECSSCCSC-EEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             EEEEEeCccCCCcEEEEEE-CCEEccccccccccccCCCc-eEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            99999997766  899999 5554432110   0000111 112235777766666789999999998874

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.89  E-value=7.5e-22  Score=142.54  Aligned_cols=183  Identities=22%  Similarity=0.323  Sum_probs=117.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee-eee---eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL-AIH---EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~-~~~---~~~~   84 (238)
                      .+...+..+.+.+|+++.|.|.+.+                          .|.+.+.|+|++. .... ...   ....
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~   56 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQ--------------------------SIGNNLHWYQQKSHESPRLLIKYASQSIS   56 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCC--------------------------CCCCCEEEEEeCCCCCcEEEEEEcccccc
Confidence            3556688899999999999999853                          3355699998542 1110 000   0001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ....|+.... .....+|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+....  .......|+.+.|.
T Consensus        57 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~g~~~~l~  133 (213)
T 3d9a_L           57 GIPSRFSGSG-SGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFP--PSSEQLTSGGASVV  133 (213)
T ss_dssp             TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHHTTEEEEE
T ss_pred             cccccEEEEc-CCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeEC--CChhhcCCCcEEEE
Confidence            1135676654 345669999999999999999999775332  2234566654   34333211  11223468899999


Q ss_pred             EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.+.| .|.+ .+.|++ ++..+...    ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus       134 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          134 CFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  201 (213)
T ss_dssp             EEEEEEBSSCCEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             EEEeeecCCceEEEEEc-CCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence            99988 6665 899999 55544321    000000110112234799999999999999999999876

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.89  E-value=4.1e-22  Score=156.50  Aligned_cols=196  Identities=24%  Similarity=0.379  Sum_probs=131.0

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeee---------------eeeecCCeEEeccCC----CCceEEEEeCCceeeeeeee
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTD---------------THVNTGGSIVFPTDS----SAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~----~~~~~~W~~~~~~~~~~~~~   81 (238)
                      ...|.+.|+|.+.|..|...+..+..               ..+..|+.+.+.|..    |.+.+.|++++.....    
T Consensus        71 ~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----  146 (384)
T 3kld_A           71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ----  146 (384)
T ss_dssp             HHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCC----
T ss_pred             CcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEe----
Confidence            34689999999999876544332222               224567888888864    4578999998754321    


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce----eeEEEEE-------cCCcccccccCCceee
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ----MAFLEVV-------IPPDISSEETSGDMMV  150 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~l~v~-------~~~~~~~~~~~~~~~~  150 (238)
                           +.+....   ....+|.|.+++.+|+|.|+|.+.|......    ...+.+.       ..|.+.. ..+....+
T Consensus       147 -----~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~-~~~~~~~~  217 (384)
T 3kld_A          147 -----DNRRFVS---QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV-QFPETVPA  217 (384)
T ss_dssp             -----SSSEEEC---TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEE-ECCSEEEE
T ss_pred             -----eccEEEE---cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceee-cCCCceEe
Confidence                 1111111   1122799999999999999999987533211    1122222       1122211 12344667


Q ss_pred             cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      .+|+.+.|.|.+.|.|.|.+.|+++++..+..       .......++.|.|.++..+|+|.|+|.|.|..|.. .....
T Consensus       218 ~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~  289 (384)
T 3kld_A          218 EKGTTVKLECFALGNPVPTILWRRADGKPIAR-------KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQ  289 (384)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTCCCCCT-------TCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             cCCCcEEEEEEEeecCCCcEEEEeCCCccccc-------cceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence            89999999999999999999999966544321       11112234579999999999999999999999944 67778


Q ss_pred             EEEEeec
Q psy7941         231 LHVHCTY  237 (238)
Q Consensus       231 l~V~~~p  237 (238)
                      |.|..+|
T Consensus       290 l~v~~~P  296 (384)
T 3kld_A          290 LTFYAQP  296 (384)
T ss_dssp             EEEEEEE
T ss_pred             EEEecCC
Confidence            8888766

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.89  E-value=2.2e-22  Score=158.01  Aligned_cols=167  Identities=23%  Similarity=0.365  Sum_probs=121.9

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|+++.|.|.+..                          .|.+.+.|++++.......   ......++.....
T Consensus       220 ~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~---~~~~~~~~~~~~~  270 (388)
T 2v5m_A          220 KPLELMVAHTISLLCPAQG--------------------------FPAPSFRWYKFIEGTTRKQ---AVVLNDRVKQVSG  270 (388)
T ss_dssp             CCEEEETTSCEEECCCCEE--------------------------ESCCEEEEEEECTTSSCEE---ECCCSSSEEEETT
T ss_pred             CceEEeeCCcEEEEEECCC--------------------------CCCCEEEEEecCCCCcccc---cccccCceecccC
Confidence            3456788999999999753                          3467799999754321110   1112233332222


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEe
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRR  174 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  174 (238)
                           +|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       271 -----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  343 (388)
T 2v5m_A          271 -----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK  343 (388)
T ss_dssp             -----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEE--SSEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred             -----EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccC--CCcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence                 89999999999999999998763 3445566788776665432  345678899999999999999999999999


Q ss_pred             CCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         175 EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                       ++..+..             .+..|.|.++..+|.|.|+|.|.|..|.. ..++.|.|
T Consensus       344 -~g~~i~~-------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  387 (388)
T 2v5m_A          344 -DGKAIGH-------------SESVLRIESVKKEDKGMYQCFVRNDRESA-EASAELKL  387 (388)
T ss_dssp             -TTEECSC-------------CSSEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             -CCEECcc-------------CCCEEEEecCChhhCEEEEEEEEcCCCcE-EEEEEEEe
Confidence             5544321             23579999999999999999999999944 77777765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.89  E-value=8.6e-22  Score=151.44  Aligned_cols=205  Identities=16%  Similarity=0.221  Sum_probs=132.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee------
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE------   81 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~------   81 (238)
                      ++.+...+..+.+.+|+++.|.|.+......                      .+.+.+.|++++.........      
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~k~~~~~~~~i~~~~~~~~   71 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPS----------------------VKITQVTWQKSTNGSKQNVAIYNPSMG   71 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSS----------------------CEEEEEEEEEEETTEEEEEEEEETTTE
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCC----------------------CceEEEEEEEcCCCCCceEEEEeccCC
Confidence            4456677888999999999999998642110                      124569999954221111100      


Q ss_pred             --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec-C-CCcceeeEEEEEcCCcccccccCCceeecCC---C
Q psy7941          82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT-N-PMTKQMAFLEVVIPPDISSEETSGDMMVPEG---G  154 (238)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g---~  154 (238)
                        ......+|+.+........+|.|.+++.+|+|.|+|.+.+ . +.....+.|.|..+|.+..........+.+|   +
T Consensus        72 ~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~  151 (331)
T 3u83_A           72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDK  151 (331)
T ss_dssp             EEECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCC
T ss_pred             CCcCcccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccc
Confidence              0011245665543334556899999999999999998543 2 3345566788888887654444556777778   7


Q ss_pred             cEEEEEE-EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         155 SAKLVCK-AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       155 ~~~l~C~-~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+.|.|. ..+.|.+.+.|+++................  ......|.|..+..+|.|.|+|.|.|..|. .+.++.|.|
T Consensus       152 ~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V  228 (331)
T 3u83_A          152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGT--VTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNV  228 (331)
T ss_dssp             EEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSC--EEEEEEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCE
T ss_pred             eEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCc--EEEEEEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEE
Confidence            7999998 788999999999843322211111001111  122235888888999999999999999884 578888888


Q ss_pred             Eeec
Q psy7941         234 HCTY  237 (238)
Q Consensus       234 ~~~p  237 (238)
                      ..+|
T Consensus       229 ~~~P  232 (331)
T 3u83_A          229 QYEP  232 (331)
T ss_dssp             EEEE
T ss_pred             ecCC
Confidence            8776

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.89  E-value=5.5e-22  Score=144.90  Aligned_cols=193  Identities=19%  Similarity=0.312  Sum_probs=119.1

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee--eeeeeeEee--cC
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV--LAIHEHVIT--NN   87 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~--~~   87 (238)
                      ...+..+.+.+|+++.|.|.+.....                         .+.+.|++++....  .........  ..
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~-------------------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~   58 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHD-------------------------HYMLEWFLTDRSGARPRLASAEMQGSELQ   58 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCS-------------------------EEEEEEEEECTTCCCCEEEEEEEETTEEE
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCC-------------------------ceEEEEEEeCCCceeEEEEeccccCCccc
Confidence            34577889999999999999864321                         25699998654421  111000000  01


Q ss_pred             ccEE----------EEEcCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcCCcccc-cccCCceeecCCC
Q psy7941          88 ARLS----------VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIPPDISS-EETSGDMMVPEGG  154 (238)
Q Consensus        88 ~~~~----------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~~~~~~-~~~~~~~~~~~g~  154 (238)
                      .++.          +..    ...|.|.+++.+|+|.|+|.+.+..  .....+.|.|..+|.... ...+....+.+|+
T Consensus        59 ~r~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~  134 (231)
T 2pet_A           59 VTMHDTRGRSPPYQLDS----QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDS  134 (231)
T ss_dssp             EEECCCSCCSSCCEECT----TCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCS
T ss_pred             cccccccccccccccCC----CceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCC
Confidence            1111          211    1259999999999999999997753  344556788887765432 2223345566888


Q ss_pred             cE-EEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEE----------EeeceEEEEEeecCCCeEEEEEeeeC--
Q psy7941         155 SA-KLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFS----------VESEVLSLTKVTRSEMGAYQCIAANG--  220 (238)
Q Consensus       155 ~~-~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~y~C~~~n~--  220 (238)
                      .+ .|.|.+ .+.|.|.+.|++ ++..+..............          ...+.|.+.....+|.|.|+|.|.|.  
T Consensus       135 ~~~~l~C~~~~~~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~  213 (231)
T 2pet_A          135 AQEIATCNSRNGNPAPKITWYR-NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLP  213 (231)
T ss_dssp             EEEEEEEEEEEEBSCCEEEEEE-TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             ceEEEEEEeECcccCCEEEEEE-CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCc
Confidence            87 999999 889999999999 5554432220000000000          00145777755555699999999994  


Q ss_pred             ---CCCCccceEEEEEE
Q psy7941         221 ---VPPTVSKRLMLHVH  234 (238)
Q Consensus       221 ---~g~~~~~~~~l~V~  234 (238)
                         .|...++.+.|.|+
T Consensus       214 ~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          214 EGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             GGCEEEEECCCEECCCC
T ss_pred             ccccccccccceEEEEe
Confidence               45324677777665

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=7.4e-23  Score=157.63  Aligned_cols=186  Identities=22%  Similarity=0.345  Sum_probs=123.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|+++.|.|.+.                          +.|.+.+.|++++..+..         ..++.....
T Consensus       131 ~~~~v~~g~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~---------~~~~~~~~~  175 (334)
T 1ry7_B          131 KLLAVPAANTVRFRCPAA--------------------------GNPTPSISWLKNGREFRG---------EHRIGGIKL  175 (334)
T ss_dssp             CEEEEETTCCEEEECCCC--------------------------CSSCCEEECCBTTBCCCT---------TSSTTCCCC
T ss_pred             eeEEecCCCcEEEEEEcc--------------------------CCCCCeEEEEECCEECcc---------cccccceec
Confidence            346788999999999984                          234678999998765321         111100011


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc--c-cccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD--I-SSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT  171 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~--~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  171 (238)
                      .....+|.|.+++.+|+|.|+|.+.+.. .....+.|.|...+.  . .....+....+..|+.+.|.|.+.|.|.|.+.
T Consensus       176 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~  255 (334)
T 1ry7_B          176 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ  255 (334)
T ss_dssp             CTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEE
T ss_pred             ccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEE
Confidence            1223489999999999999999998753 334455677765321  1 11112345678899999999999999999999


Q ss_pred             EEeC---CCeeeEeecCCCCCc------ceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         172 WRRE---DNKEIIVRSNPPSSQ------KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       172 W~~~---~~~~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |+++   ++..+..........      .........|.|.++..+|+|.|+|.|.|..|. ...++.|.|...|
T Consensus       256 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~  329 (334)
T 1ry7_B          256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVLPAE  329 (334)
T ss_dssp             EEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCC-EEEEEEEEEECSC
T ss_pred             EEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCe-EEEEEEEEEEECC
Confidence            9994   222221111000000      000001237999999999999999999999995 4788888888654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.89  E-value=3.1e-21  Score=143.33  Aligned_cols=197  Identities=15%  Similarity=0.231  Sum_probs=123.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee------ee
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH------EH   82 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~------~~   82 (238)
                      ..+..+.+.+|+++.|.|.+....                        .+.+.+.|+|++  ....  ....      ..
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~   60 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYT------------------------FTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKY   60 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSC------------------------GGGSCEEEEEEETTTEEEEEEEECTTTCCEEE
T ss_pred             ECCCCeeecCCCcEEEEEEecccc------------------------CCCceEEEEEECCCCCcEEEEEEecCCCceee
Confidence            445668899999999999986321                        014569999953  2211  1100      00


Q ss_pred             EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----c--ceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941          83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----T--KQMAFLEVVIPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~  155 (238)
                      .....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...    .  ...+.|.|..++.+.  ..+..+.+.+|+.
T Consensus        61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~--~~p~~~~v~~G~~  138 (256)
T 1nqb_A           61 NEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT--QTPLSLPVSLGDQ  138 (256)
T ss_dssp             CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE--EECSEEEECTTCC
T ss_pred             CcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE--ecCcEEEEecCCc
Confidence            01124677776542 4577999999999999999999977522    1  123456666554432  2345567899999


Q ss_pred             EEEEEEEccccCC-----eEEEEeC--CCeee-EeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         156 AKLVCKAKGYPTP-----KITWRRE--DNKEI-IVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       156 ~~l~C~~~~~p~~-----~~~W~~~--~~~~~-~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +.|.|.+.+.|.+     .+.|++.  +.... .....    .........   .....|.|.++..+|+|.|+|.+.|.
T Consensus       139 v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          139 ASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             EEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            9999999987764     9999993  32221 11000    000111111   12347999999999999999999985


Q ss_pred             CCCCccceEEEEEEe
Q psy7941         221 VPPTVSKRLMLHVHC  235 (238)
Q Consensus       221 ~g~~~~~~~~l~V~~  235 (238)
                      ..........|.|..
T Consensus       219 ~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          219 VPYTFGGGTKLEIKR  233 (256)
T ss_dssp             SSCEECCCEEEEECC
T ss_pred             CceEECCCEEEEEEC
Confidence            443334455566654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.89  E-value=2.6e-21  Score=142.94  Aligned_cols=200  Identities=15%  Similarity=0.324  Sum_probs=123.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeee-----
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIH-----   80 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~-----   80 (238)
                      .+..+ ..+.+.+|+++.|.|.+.....                        +.+.+.|+|+...  ..  ....     
T Consensus         5 ~v~~p-~~~~v~~G~~v~L~C~~~g~p~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~   59 (247)
T 2ghw_B            5 QLVQS-GGGVVQPGKSLRLSCAASGFAF------------------------SSYAMHWVRQAPGKGLEWVAVISYDGSN   59 (247)
T ss_dssp             EEEEE-CCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSSC
T ss_pred             EEEec-CCEEEecCCcEEEEEEeccccC------------------------CCceEEEEEeCCCCceEEEEEEecCCCc
Confidence            33333 5588999999999999964210                        1356999995321  11  0000     


Q ss_pred             -eeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCC-------------ccccc
Q psy7941          81 -EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPP-------------DISSE  142 (238)
Q Consensus        81 -~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~-------------~~~~~  142 (238)
                       ........|+.+... ....++|.|.+++.+|+|.|+|.+.+.. .  ....+.|.|..++             .+.+.
T Consensus        60 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  139 (247)
T 2ghw_B           60 KYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLT  139 (247)
T ss_dssp             EEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEE
T ss_pred             eeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEE
Confidence             000112457777654 3457799999999999999999997751 1  1223456776542             11122


Q ss_pred             ccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceEE---EeeceEEEEEeecCCCeE
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~  212 (238)
                      ..+....+.+|+.+.|.|.+.+.|.+.+.|++.  +.... .....    .........   .....|.|.++..+|+|.
T Consensus       140 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  219 (247)
T 2ghw_B          140 QSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAV  219 (247)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEE
T ss_pred             ccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEE
Confidence            234456788999999999999988889999983  22211 11000    000111111   123369999999999999


Q ss_pred             EEEEeeeCCCCCccceEEEEEE
Q psy7941         213 YQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       213 y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |+|.|.|..+........|.|.
T Consensus       220 Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          220 YYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEccCCCceEcCCEEEEEC
Confidence            9999998654333344455554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.89  E-value=2.4e-21  Score=147.70  Aligned_cols=182  Identities=19%  Similarity=0.252  Sum_probs=124.6

Q ss_pred             ccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .|.+...+. ...+.+|+++.|.|.+..                         +.|.+.+.|++++..+.         .
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~~~~~~i~---------~  151 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIF---------E  151 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESC-------------------------CCSSCEEEEEETTEEEC---------S
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEe-------------------------CCCCCEEEEEECCEECe---------e
Confidence            555554443 788999999999999851                         34567899999876532         2


Q ss_pred             CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc---------------------CCccccccc
Q psy7941          87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI---------------------PPDISSEET  144 (238)
Q Consensus        87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~---------------------~~~~~~~~~  144 (238)
                      ..++.+.... ....+|.|.+++.+|+|.|+|.+.+... .....+.+..                     +|.+..   
T Consensus       152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---  227 (312)
T 2y23_A          152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE---  227 (312)
T ss_dssp             SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC-EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE---
T ss_pred             CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc-eEEEEEEEcchhhhhhcccccccccchhhccCCceee---
Confidence            3444444322 3455799999999999999999975432 2333333311                     122111   


Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .....+.+|+.+.|.|.+.+.|.| .+.|++ ++..+.......     .......|.|.++..+|+|.|+|.|.|..|.
T Consensus       228 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~~~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~  301 (312)
T 2y23_A          228 YLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHD-----FKDGICTLLITEFSKKDAGIYEVILKDDRGK  301 (312)
T ss_dssp             EEEEEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEEEECCC---------CEEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred             cceEEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECCCCCcEE-----EECCEEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence            112567899999999999999988 999999 666554322111     1122358999999999999999999999994


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                      . +.++.|.|+
T Consensus       302 ~-~~~~~l~i~  311 (312)
T 2y23_A          302 D-KSRLKLVDE  311 (312)
T ss_dssp             E-EEEEEECSC
T ss_pred             e-eeeeEEEec
Confidence            4 677776653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.89  E-value=2.4e-21  Score=143.65  Aligned_cols=202  Identities=16%  Similarity=0.284  Sum_probs=127.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeeee---------
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLAI---------   79 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~---------   79 (238)
                      .++..+..+.+.+|+++.|.|.+....                        .+.+.+.|+|.. +......         
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~   58 (253)
T 3uzq_A            3 KLLEQSGAELVKPGASVRLSCTASGFN------------------------IKDTYMSWVKQRPEQGLEWIGRIDPANGD   58 (253)
T ss_dssp             CCEEECCCEEECTTCCEEEEEEECSSC------------------------GGGSCEEEEEECTTCCEEEEEEEETTTTE
T ss_pred             eeEecCCCeeecCCCcEEEEEEeeCCc------------------------ccCceEEEEEeCCCCCCEEEEEEccCCCc
Confidence            345677788999999999999986421                        114569999942 2111111         


Q ss_pred             eeeEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcC-------------Ccccccc
Q psy7941          80 HEHVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIP-------------PDISSEE  143 (238)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~-------------~~~~~~~  143 (238)
                      ........+|+.+.... ...++|.|.+++.+|+|.|+|.+.+....  ...+.+.|...             +...+..
T Consensus        59 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~  138 (253)
T 3uzq_A           59 TKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQ  138 (253)
T ss_dssp             EEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEE
T ss_pred             ceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEEC
Confidence            01111224677776543 35778999999999999999999764322  23455666642             1122222


Q ss_pred             cCCceeecCCCcEEEEEEEccccCC----eEEEEeCCC-e--eeEeecC----CCCCcceEE-E--eeceEEEEEeecCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTP----KITWRREDN-K--EIIVRSN----PPSSQKVFS-V--ESEVLSLTKVTRSE  209 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~----~~~W~~~~~-~--~~~~~~~----~~~~~~~~~-~--~~~~l~i~~~~~~d  209 (238)
                      .+....+.+|+++.|.|.+.+.|.+    .+.|++... .  .......    ......... .  ....|.|.++..+|
T Consensus       139 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  218 (253)
T 3uzq_A          139 TPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADD  218 (253)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHH
Confidence            3445778999999999999987776    999998421 1  1111110    000111111 1  12369999999999


Q ss_pred             CeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         210 MGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       210 ~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +|.|+|.+.|..+.....-..|.|..
T Consensus       219 sG~Y~C~~~n~~~~~fg~gt~l~v~~  244 (253)
T 3uzq_A          219 VATYFCQRSNEVPWTFGGGTKLEIKR  244 (253)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             CEEEEEEEccCCCcEECCCEEEEEcC
Confidence            99999999997654445555666654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.89  E-value=7.6e-21  Score=141.20  Aligned_cols=204  Identities=17%  Similarity=0.244  Sum_probs=128.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-   80 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-   80 (238)
                      ..+|.+...+..+.+.+|++++|.|.+....                        .+.+.+.|+|....  .  ..... 
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~   59 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYR------------------------FSHFTVHWVRQAPGQRFEWMGWINP   59 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCCEEEEEEET
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeeccc------------------------ccCceEEEEEECCCCCcEEEEEEEc
Confidence            3467788889999999999999999997421                        12456999985311  1  11111 


Q ss_pred             -----eeEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC------------CC-cceeeEEEEEcCCc---
Q psy7941          81 -----EHVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN------------PM-TKQMAFLEVVIPPD---  138 (238)
Q Consensus        81 -----~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~------------~~-~~~~~~l~v~~~~~---  138 (238)
                           .......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.            .. ....+.|.|...+.   
T Consensus        60 ~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~  139 (256)
T 3juy_B           60 YNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSG  139 (256)
T ss_dssp             TTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----
T ss_pred             CCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccc
Confidence                 0011124578776533 45678999999999999999999764            11 22344567765322   


Q ss_pred             ----------ccccccCCceeecCCCcEEEEEEEccccC-CeEEEEeCC--Ce-eeEeecC----CCCCcceEEE---ee
Q psy7941         139 ----------ISSEETSGDMMVPEGGSAKLVCKAKGYPT-PKITWRRED--NK-EIIVRSN----PPSSQKVFSV---ES  197 (238)
Q Consensus       139 ----------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~--~~-~~~~~~~----~~~~~~~~~~---~~  197 (238)
                                ..+...+....+.+|+.+.|.|.+.+.|. +.+.|++..  .. .......    ..........   ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  219 (256)
T 3juy_B          140 GGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTD  219 (256)
T ss_dssp             ------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE
T ss_pred             ccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCE
Confidence                      12223355677899999999999988776 899999832  11 1111100    0001111111   12


Q ss_pred             ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         198 EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       198 ~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      ..|.|.++..+|+|.|+|.+.|..+........|.|
T Consensus       220 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          220 FTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLER  255 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence            369999999999999999999865533344555555

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.89  E-value=9.4e-22  Score=151.33  Aligned_cols=184  Identities=17%  Similarity=0.227  Sum_probs=121.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+........+.+|+++.|.|.+.                          +.| .+.+.|+|++..+..        .
T Consensus       128 ~p~~~~~~~~~~~~~G~~v~L~C~~~--------------------------g~p~~~~i~W~k~~~~l~~--------~  173 (329)
T 3oq3_B          128 PPSCIPETYELGTHDKYGIDLYCGIL--------------------------YAKHYNNITWYKNNQELII--------D  173 (329)
T ss_dssp             CCSCEEEEEETTSSTTTCEEEECCCC--------------------------SCCCCCEEEEEETTEECCC--------S
T ss_pred             CCcEeccccceEEeCCCcEEEEeccC--------------------------CCCCCceEEEEECCccCCC--------C
Confidence            34444444444566788889999774                          345 678999998766421        2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC--C-Cccee----eEEEEEcCCcc--cccccCCceeecCCCcEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN--P-MTKQM----AFLEVVIPPDI--SSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~--~-~~~~~----~~l~v~~~~~~--~~~~~~~~~~~~~g~~~~  157 (238)
                      +.++....     .+|.|.+++.+|+|.|+|.+.+.  . .....    +.|.|..++..  ... .+....+..|+.+.
T Consensus       174 ~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~  247 (329)
T 3oq3_B          174 GTKYSQSG-----QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPAN  247 (329)
T ss_dssp             SSSEEEET-----TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEE
T ss_pred             CceEecCC-----CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEE
Confidence            33443332     29999999999999999999864  1 22222    55777665532  111 34457789999999


Q ss_pred             EEEEEcccc---CC-eEEEEeCCCeeeEeecCCCCCc--ceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEE
Q psy7941         158 LVCKAKGYP---TP-KITWRREDNKEIIVRSNPPSSQ--KVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       158 l~C~~~~~p---~~-~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~  230 (238)
                      |.|.+.+.|   .+ .+.|++++...... .......  .........|.|.++..+|.| .|+|.|.|..|.. +.++.
T Consensus       248 l~C~~~g~p~~~~~i~v~W~~~g~~i~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~-~~~~~  325 (329)
T 3oq3_B          248 ITCTAVSTSLLVDDVLIDWENPSGWIIGL-DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTT  325 (329)
T ss_dssp             EEEEEEETTCCTTCCEEEEECTTSCBCCB-CSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE-EEEEE
T ss_pred             EEEEEEECCCCCCCcEEEEEECCeeeecc-CCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce-EEEEE
Confidence            999999987   77 89999954332211 1000000  000013457999999999999 9999999999944 66666


Q ss_pred             EEE
Q psy7941         231 LHV  233 (238)
Q Consensus       231 l~V  233 (238)
                      |.|
T Consensus       326 l~v  328 (329)
T 3oq3_B          326 VVL  328 (329)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.89  E-value=1.5e-21  Score=143.17  Aligned_cols=185  Identities=20%  Similarity=0.264  Sum_probs=117.9

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~   82 (238)
                      .+.+...+..+.+.+|+++.|.|.+...                          +.+.+.|+|.....    .... ...
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~   77 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQD--------------------------VSTAVAWYQQKPGKAPKLLIYSASFL   77 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEE
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCC--------------------------CCceEEEEEECCCCCCEEEEEecccc
Confidence            4566677888999999999999998642                          35679999953211    1100 011


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ......|+.... ....++|.|.+++.+|+|.|+|.+.+...  ....+.+.|..   +|.+...  ........|+.+.
T Consensus        78 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~g~~v~  154 (237)
T 3sob_L           78 YSGVPSRFSGSG-SGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIF--PPSDEQLKSGTAS  154 (237)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEE--CCCHHHHHHTEEE
T ss_pred             CCCCCCcEEEEc-CCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEe--CCChhhccCCceE
Confidence            112245776663 34567999999999999999999976442  23344566654   2322221  1112233578899


Q ss_pred             EEEEEcc-cc-CCeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         158 LVCKAKG-YP-TPKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       158 l~C~~~~-~p-~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.|.+.+ .| .+.+.|++ ++..+...    ................|.+.....+|.|.|+|.|.|...
T Consensus       155 l~C~~~~~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          155 VVCLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             EEEEEcccCCCceEEEEEE-CCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            9999988 55 57999999 55444311    111111111112234688888999999999999999875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.89  E-value=4.2e-21  Score=146.62  Aligned_cols=157  Identities=15%  Similarity=0.317  Sum_probs=107.6

Q ss_pred             CCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc-----
Q psy7941          61 SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI-----  135 (238)
Q Consensus        61 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~-----  135 (238)
                      .|.+.+.|++++..+..         ..++.... ......|.|.+++.+|+|.|+|.+.+... .....+.+.+     
T Consensus       135 ~p~~~i~W~~~~~~~~~---------~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~~  203 (317)
T 2y25_A          135 VEDLKVNWSHNGSAIRY---------SDRVKTGV-TGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDE  203 (317)
T ss_dssp             CSSCEEEEEESSSBCCC---------CSSEEEEE-CSSEEEEEEESCCGGGCEEEEEEEECSSC-EEEEEEEECHHHHHH
T ss_pred             CCCcEEEEEECCEECCC---------CCCeEEec-cCCEEEEEECcCCcccCeeEEEEEEeCCc-eEEEEEEEeeeeccc
Confidence            47889999998765432         23343332 22344799999999999999999987533 2223333321     


Q ss_pred             -----------------CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--
Q psy7941         136 -----------------PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--  196 (238)
Q Consensus       136 -----------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--  196 (238)
                                       .|.+. ...+....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....     .......  
T Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~-----~~~~~~~~~  276 (317)
T 2y25_A          204 AYAEFQRLKQAAIAEKNRARVL-GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDD-----HCNLKFEAG  276 (317)
T ss_dssp             HHHHHHHHHHHHHHTTTSCEEE-EBCCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCCS-----SEEECCBTT
T ss_pred             cchhhcccCCcccCcCCCCccc-ccCCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCCC-----cEEEEEcCC
Confidence                             11111 112334678899999999999999999999999 444443211     1111111  


Q ss_pred             -eceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         197 -SEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       197 -~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                       ...|.|.++..+|.|.|+|.|.|..|.. +.++.|.|..|
T Consensus       277 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P  316 (317)
T 2y25_A          277 RTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFIP  316 (317)
T ss_dssp             TEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEEcC
Confidence             1379999999999999999999999944 88888888755

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.89  E-value=9.6e-22  Score=148.55  Aligned_cols=171  Identities=15%  Similarity=0.190  Sum_probs=127.3

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                              .+.|++++..+...      .
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~------------------------------~i~W~~~~~~~~~~------~   53 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD------------------------------FVRWTFKTYFNEMV------E   53 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT------------------------------EEEEEEECSSSCEE------E
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC------------------------------cEEEecCCcceeee------c
Confidence            35688888889999999999999999852                              39999987764100      0


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                      ..+           .+|.|.+++.+|+|.|+|.+.+ + ....+.+.|..+|.+..  ......+.+|+.+.|.|.+.+ 
T Consensus        54 ~~~-----------~~L~i~~~~~~d~G~Y~C~~~n-g-~~~~~~l~V~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~-  117 (290)
T 2o26_X           54 NKK-----------NEWIQEKAEATRTGTYTCSNSN-G-LTSSIYVFVRDPAKLFL--VGLPLFGKEDSDALVRCPLTD-  117 (290)
T ss_dssp             ECS-----------SEEEETTCCGGGCEEEEEEESS-S-CEEEEEEEEECSSCCBC--CCCCEEEETTSCEEECCCBSC-
T ss_pred             CCC-----------ceEEEeccCHHhCeEEEEEeeC-C-ccEEEEEEEeCCCcccc--cccceEEecCCeEEEeCcCCC-
Confidence            011           2999999999999999999987 3 36667788887776552  344567889999999999986 


Q ss_pred             cC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEEEE
Q psy7941         166 PT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       166 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      |. +.+.|++.++..+..      ...........|.|.++..+|.| .|+|.|.|..+...+..+.|.|.
T Consensus       118 p~~~~v~W~~~~g~~l~~------~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          118 PQVSQYSLIECDGKSLPT------DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             CSCEEEEEEETTSCCCCT------TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCceEEEEeCCCcCCCC------CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            77 899996546554421      12222333457999999999999 99999999866544566778776

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.89  E-value=2.9e-21  Score=143.48  Aligned_cols=199  Identities=15%  Similarity=0.270  Sum_probs=122.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-eeeee---------eeeEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-AVLAI---------HEHVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~~~~---------~~~~~   84 (238)
                      +..+.+.+|++++|.|.+.....                        +.+.+.|++.... .....         .....
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~   64 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTF------------------------TEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQ   64 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEECG
T ss_pred             cCceEEcCCCCEEEEEEEecccc------------------------cccEEEEEEECCCCCcEEEEEEeccCCcccccc
Confidence            44567999999999999864211                        1356999985321 11111         00111


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcC--------------Cccccccc
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIP--------------PDISSEET  144 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~--------------~~~~~~~~  144 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+..   .  ....+.|.|...              ....+...
T Consensus        65 ~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~  144 (256)
T 3umt_A           65 KFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQS  144 (256)
T ss_dssp             GGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEE
T ss_pred             cccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcC
Confidence            224677776543 356789999999999999999997651   1  223455666641              01112223


Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-Ceee--EeecC----CCCCcceEEE---eeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NKEI--IVRSN----PPSSQKVFSV---ESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~~~--~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~  214 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++.. +...  .....    .....+....   ....|.|.++..+|+|.|+
T Consensus       145 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  224 (256)
T 3umt_A          145 PSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYY  224 (256)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEE
Confidence            44577899999999999999888899999842 1111  11100    0001111111   1235999999999999999


Q ss_pred             EEeeeCCCCCccceEEEEEEeec
Q psy7941         215 CIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       215 C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.+.|..+........|.|..++
T Consensus       225 C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          225 CLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             EEECSSSSCEECCCEEEEEC---
T ss_pred             EEEeeCCCcEECCCEEEEEECCC
Confidence            99998665444556677776543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.89  E-value=6.9e-23  Score=151.49  Aligned_cols=200  Identities=17%  Similarity=0.245  Sum_probs=114.6

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------ee--E
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------EH--V   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------~~--~   83 (238)
                      +.++..+.+..|+++.|.|.+......                     ......+.|++++........      ..  .
T Consensus         7 v~~p~~~~v~~G~~v~L~C~~~g~p~~---------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~   65 (248)
T 3pv7_A            7 MMAGGTQITPLNDNVTIFCNIFYSQPL---------------------NITSMGITWFWKSLTFDKEVKVFEFFGDHQEA   65 (248)
T ss_dssp             CSTTSEEEEETTSCEEECCEEEESSCC---------------------CTTSCEEEEEEECSSCCCEEEEEEEESSCEEE
T ss_pred             EeCCCCeEEeCCCCEEEeeEEecCCCc---------------------CCCceEEEEEEEcCCCCcceEEEEecCCcccc
Confidence            356778889999999999999642111                     011235999997433211100      00  0


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  162 (238)
                      +..+.++.......+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..+|.+.....   .....|..+.|.|.+
T Consensus        66 ~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~  142 (248)
T 3pv7_A           66 FRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCES  142 (248)
T ss_dssp             SSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEE
T ss_pred             cCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEE
Confidence            1111121111122345579999999999999999997653 334456788888777654322   234457778899999


Q ss_pred             cc-ccCC-eEEEEeCCCeee-----E-----eecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceE
Q psy7941         163 KG-YPTP-KITWRREDNKEI-----I-----VRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRL  229 (238)
Q Consensus       163 ~~-~p~~-~~~W~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~  229 (238)
                      .| +|.| .+.|++++....     .     ....... ... ....+.|.+.....+|.|.|+|.|.|..+. ..+.++
T Consensus       143 ~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v  220 (248)
T 3pv7_A          143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNM-DGT-FNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNF  220 (248)
T ss_dssp             EEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECT-TSC-EEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEE
T ss_pred             ccEECCCeEEEEEECCccCCCccccccceeecccEECC-CCC-EEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEE
Confidence            88 8998 999999553110     0     0000000 111 122346788888888999999999999874 456677


Q ss_pred             EEEEEeec
Q psy7941         230 MLHVHCTY  237 (238)
Q Consensus       230 ~l~V~~~p  237 (238)
                      .|.|..|+
T Consensus       221 ~l~V~~p~  228 (248)
T 3pv7_A          221 TLTAARHS  228 (248)
T ss_dssp             CC------
T ss_pred             EEEEcCCC
Confidence            77775543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.88  E-value=9.3e-22  Score=142.52  Aligned_cols=184  Identities=17%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC---cee-eeeeee---
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD---TKA-VLAIHE---   81 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~-~~~~~~---   81 (238)
                      |.+..++ .+.+.+|+++.|.|.+....                         |.+.+.|+|..   ... ......   
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~   55 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQH-------------------------STYTIEWYQQQPLKPPKYVMELKKDGS   55 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGG-------------------------TTCCEEEEEECTTSCCEEEEEECTTSC
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCC-------------------------CCcEEEEEEECCCCCeEEEEEEcccCc
Confidence            5566777 88999999999999996431                         35679999943   111 111100   


Q ss_pred             --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc----CCcccccccCCcee
Q psy7941          82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI----PPDISSEETSGDMM  149 (238)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~~~~~~~~~~~~~~  149 (238)
                        .......|+.+.. ....++|.|.+++.+|+|.|+|.+.+...      ....+.|.|..    +|.+...  .....
T Consensus        56 ~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~--~~~~~  132 (218)
T 3s96_B           56 HSTGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVF--PPSSE  132 (218)
T ss_dssp             EEECSSCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEE--CCCHH
T ss_pred             cccCCCcccceEEec-CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEee--CCCcc
Confidence              0011235777665 45667999999999999999999976432      23345677773    3333221  11223


Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...|+.+.|.|.+.+ .|.+ .+.|++ ++..+.......  ..........+.|.+.....+|.|.|+|.|.|..+
T Consensus       133 ~~~~~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          133 ELKENKATLVCLISNFSPSGVTVAWKA-NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD  208 (218)
T ss_dssp             HHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred             cccCCcEEEEEEECcccCCCeEEEEEE-CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence            345688999999988 6777 899999 555543211100  00000111123477777788889999999999887

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.88  E-value=6.1e-23  Score=158.45  Aligned_cols=196  Identities=16%  Similarity=0.190  Sum_probs=133.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ...|.|...+..+.+.+|+++.|.|.+......                   ..+.|.+.+.|++++........     
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-------------------~~~~p~~~v~W~k~~~~~~~~~~-----   71 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLW-------------------ASVSPRINLTWHKNDSARTVPGE-----   71 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCC-------------------STTSSCCBCCCEESSCCSCCSCC-----
T ss_pred             hhhHhhCcCceEEEEECCccEEEEecccccccc-------------------ccCCCCceEEEEECCCCcccCcc-----
Confidence            456889999999999999999999998521000                   01345678999998765322110     


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE---
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK---  161 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~---  161 (238)
                      ...++.....     +|.|.+++.+|+|.|+|.+.+.. .....+.|.|..++............+..|+.+.|.|.   
T Consensus        72 ~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~  146 (339)
T 3o4o_C           72 EETRMWAQDG-----ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLS  146 (339)
T ss_dssp             SSSCEEEETT-----EEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCT
T ss_pred             ccccEEeeCC-----eEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCc
Confidence            1233332222     89999999999999999997753 33445667777666543222223346789999999999   


Q ss_pred             --EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC---CccceEEEEEEe
Q psy7941         162 --AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP---TVSKRLMLHVHC  235 (238)
Q Consensus       162 --~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~---~~~~~~~l~V~~  235 (238)
                        +.+.|.+.+.|++ ++..+....    ...........|.|.++..+|.|.|+|.|.|..|.   ..+..+.|.|..
T Consensus       147 ~~~~g~p~~~v~W~k-~g~~~~~~~----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          147 EFTRDKTDVKIQWYK-DSLLLDKDN----EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK  220 (339)
T ss_dssp             TTCCSSSCCCBCCEE-SSCBCCTTC----SSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred             ccccCCCCceEEEec-CCeeCCCCC----ceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence              7888999999999 444432110    11111112247999999999999999999998873   235677777764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=3.4e-21  Score=141.74  Aligned_cols=179  Identities=16%  Similarity=0.160  Sum_probs=121.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.. .+.+|++++|+|.+...                           ...+.|+|++..+....       
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~---------------------------~~~~~w~k~g~~~~~~~-------   50 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNYG---------------------------AVEYQLHFEGSLFAVDR-------   50 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCEEEEEETTEEEEEEC-------
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCCC---------------------------CcEEEEEECCCcccccc-------
Confidence            46777777766 88999999999997521                           34589999876543110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc---CCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      ...    ........|.|.+++.+|+|.|+|.+.+..   ..+....|.|..   +|.+...  + ...+.+|+.+.|.|
T Consensus        51 ~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~--p-~~~v~~G~~vtL~C  123 (242)
T 1p6f_A           51 PKP----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH--P-GPEVISGEKVTFYC  123 (242)
T ss_dssp             CSS----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEE--S-CSEEETTCEEEEEE
T ss_pred             ccc----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEcc--C-CCccCCCCcEEEEE
Confidence            000    011233489999999999999999997642   123455677764   3333321  2 24578999999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC--CCCccceEEEEEEee
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV--PPTVSKRLMLHVHCT  236 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~--g~~~~~~~~l~V~~~  236 (238)
                      .+.+. .+.+.|++++ ..+....       ........|.|.++..+|+|.|+|.+.|..  ....+..+.|.|..+
T Consensus       124 ~~~~~-~~~~~w~k~g-~~~~~~~-------~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          124 RLDTA-TSMFLLLKEG-RSSHVQR-------GYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             ECTTS-CSEEEEEECS-SSCEEEE-------EECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             ecCCC-CCEEEEEECC-CccCccc-------cCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            98764 4699999954 3332110       112234579999999999999999999864  335578888888763

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.88  E-value=2.8e-21  Score=139.30  Aligned_cols=182  Identities=23%  Similarity=0.315  Sum_probs=115.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~   84 (238)
                      .+.. |..+.+.+|+++.|.|.+..                          .|.+.+.|+++..  .......   ....
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~g~~~~~~~~~~~~~~~   55 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASE--------------------------SVTSRMHWYQQKPGQQPKLLIYKASNLAS   55 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCC--------------------------ccCCCEEEEEECCCCCeEEEEEccccccC
Confidence            3455 78889999999999999853                          2345699999532  1110000   0001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ....|+.+.. ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+....  ....+..|+.+.|.
T Consensus        56 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~--~~~~~~~g~~v~l~  132 (210)
T 1lk3_L           56 GVPARFSGSG-SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFP--PSTEQLATGGASVV  132 (210)
T ss_dssp             TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHTTTEEEEE
T ss_pred             CccccEEEEe-cCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEEC--CchhhccCCcEEEE
Confidence            1235776655 345669999999999999999999775432  2234566654   33333211  11223478899999


Q ss_pred             EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.+.| .|.+ .+.|++ ++..+...    ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus       133 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          133 CLMNNFYPRDISVKWKI-DGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             EEEEEEBSSCCEEEEEE-TTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             EEEEeEeCCceEEEEEe-CCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            99987 5554 899999 55443211    000000111112234799999999999999999999875

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.88  E-value=2e-21  Score=144.56  Aligned_cols=165  Identities=19%  Similarity=0.208  Sum_probs=125.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|...+..+.+.+|+++.|.|.+..                          .|.+ .+.|++++..+..         
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~--------------------------~~~~~~~~W~~~g~~~~~---------   45 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLH--------------------------LPGSSSTQWFLNGTATQT---------   45 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSS--------------------------CCCTTCEEEEETTEECSC---------
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCC--------------------------CCCCceEEEEECCEEeec---------
Confidence            478888899999999999999999853                          2334 7999997665321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~  165 (238)
                      .           ...|.|.+++.+|+|.|+|.+.+.. .+..+.+.|..++....   +....+.+|+.+.|.|.+ .+.
T Consensus        46 ~-----------~~~l~i~~~~~~d~G~Y~C~~~~~~-~s~~~~l~v~~~~~~~~---~~~~~~~~g~~v~l~C~~~~~~  110 (262)
T 3rjd_A           46 S-----------TPSYRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWLLLQ---VSSRVFTEGEPLALRCHAWKDK  110 (262)
T ss_dssp             C-----------SSEEEESSCCGGGCEEEEEEESSSC-CCCCEEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGGC
T ss_pred             c-----------CCeEEEecCCcccCeEEEEEEecCC-ccccEEEEEeccceEec---CCCeEEecCCeEEEEEEccCCC
Confidence            1           1189999999999999999997543 34466777776553322   233567789999999999 678


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      |.+.+.|++ ++..+..           ......|.|.++..+|.|.|+|.+.|..+ ..+..+.|.|..
T Consensus       111 p~~~v~W~~-~g~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~  167 (262)
T 3rjd_A          111 LVYNVLYYR-NGKAFKF-----------FHWNSNLTILKTNISHNGTYHCSGMGKHR-YTSAGISVTVKE  167 (262)
T ss_dssp             CCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEESSSE-EEEECEEEEEEC
T ss_pred             CCceEEEEE-CCccccc-----------cCCCCeEEEEECChhhCEEEEEEEeCCCC-ccccceEEEecc
Confidence            888999999 5554432           22345799999999999999999999887 447777888875

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.88  E-value=2e-21  Score=149.44  Aligned_cols=198  Identities=17%  Similarity=0.248  Sum_probs=132.5

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeee----------------eecC---CeEEecc----CCCCceEEEEeCCceee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH----------------VNTG---GSIVFPT----DSSAMKVAWIKADTKAV   76 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~----~~~~~~~~W~~~~~~~~   76 (238)
                      +...|.+.|.|.+.+.........+.+.+                +..|   +.+.+.|    +.|.+.+.|+++.....
T Consensus        99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~  178 (331)
T 3u83_A           99 LELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA  178 (331)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             cCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcc
Confidence            56789999999854332222222222221                3344   4455555    46889999999633222


Q ss_pred             eeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941          77 LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~  155 (238)
                      .  .......++.+.+..      .|.|.++..+|+|.|+|.+.+.. .....+.|.|..+|.+... ......+.+|+.
T Consensus       179 ~--~~~~~~~~~~~~~~~------~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~-~~~~~~~~~g~~  249 (331)
T 3u83_A          179 E--YQEIRNPNGTVTVIS------RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE-GFDGNWYLQRMD  249 (331)
T ss_dssp             E--EEEEECTTSCEEEEE------EEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEE-CCCSCCBTTCCC
T ss_pred             c--cceeECCCCcEEEEE------EEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEe-cCCCceEeCCCe
Confidence            1  111222344444443      79999999999999999998763 3345566777777765432 233345788999


Q ss_pred             EEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE-EeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-KVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.+.|.|. +.|++++ ..+..        . ....++.|.|. ++..+|.|.|+|.|.|..|.. +.++.|.|
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~-~~~~~--------~-~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  318 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLN-GSLPK--------G-VEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNI  318 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETT-BSCCT--------T-EEEETTEEEECSCCCGGGCEEEEEEEEETTEEE-EEEEEECC
T ss_pred             EEEEEeCcCCCCCCEEEEEECC-Ccccc--------c-ceecCcEEEEeCCCccccCeEEEEEEEeccccc-eEEEEEEE
Confidence            99999999999997 9999944 33321        1 22345689999 899999999999999999954 88888888


Q ss_pred             Eeec
Q psy7941         234 HCTY  237 (238)
Q Consensus       234 ~~~p  237 (238)
                      ...+
T Consensus       319 ~~~~  322 (331)
T 3u83_A          319 TEAA  322 (331)
T ss_dssp             BC--
T ss_pred             eccc
Confidence            7643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.88  E-value=5.7e-22  Score=153.63  Aligned_cols=199  Identities=17%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeee------------------eeecCCeEEeccC--------CCCceEEEEeCCc
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT------------------HVNTGGSIVFPTD--------SSAMKVAWIKADT   73 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--------~~~~~~~W~~~~~   73 (238)
                      +...|.+.|.|.+.|..+.... .+.+.                  .+..|+.+.+.|.        .|.+.+.|+|++.
T Consensus        86 ~~~~D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~  164 (349)
T 4dep_C           86 TLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY  164 (349)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEE-EEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred             CChhhCEEEEEEEecCCceEEE-EEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence            5678999999999986554321 11111                  2345777877775        6899999999876


Q ss_pred             eeeeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-Cc----ceeeEEEEEc------CCccccc
Q psy7941          74 KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MT----KQMAFLEVVI------PPDISSE  142 (238)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~----~~~~~l~v~~------~~~~~~~  142 (238)
                      .+.         .+.++.....     .|.|.+++.+|+|.|+|.+.+.. ..    .....+.|..      +|.+...
T Consensus       165 ~l~---------~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~  230 (349)
T 4dep_C          165 KIQ---------NFNNVIPEGM-----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP  230 (349)
T ss_dssp             ECC---------SCSSEEEETT-----EEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--
T ss_pred             ECC---------CccceeecCC-----EEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecC
Confidence            532         1122222221     89999999999999999998742 22    3344455554      3433322


Q ss_pred             ccCCceeecCCCcEEEEEEEc----cccCCeEEEEeCCCeeeEe-ecCCCCCcc------eEEEeeceEEEEEeecCCC-
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAK----GYPTPKITWRREDNKEIIV-RSNPPSSQK------VFSVESEVLSLTKVTRSEM-  210 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~----~~p~~~~~W~~~~~~~~~~-~~~~~~~~~------~~~~~~~~l~i~~~~~~d~-  210 (238)
                      .......+..|+.+.|.|.+.    +.|.|.+.|++ ++..+.. .........      ........|.|.++..+|. 
T Consensus       231 ~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~  309 (349)
T 4dep_C          231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLK  309 (349)
T ss_dssp             --------------CCCEEEEECCCTTCCCEEEEES-SCC--------CCCCEEEECCTTCCEEEEECC-----------
T ss_pred             CCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEE-CCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcC
Confidence            111112678899999999998    57889999999 4444332 111000000      0112234699999999999 


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      |.|+|.|.|..|.. +..+.|.|..
T Consensus       310 G~Y~C~a~N~~G~~-~~~~~l~v~~  333 (349)
T 4dep_C          310 RSYVCHARSAKGEV-AKAAKVKQKV  333 (349)
T ss_dssp             --CEEEEECSSCEE-EEECC-----
T ss_pred             CcEEEEEEcCCCcE-EEEEEEeeec
Confidence            99999999999944 6777777766

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.88  E-value=6e-21  Score=141.19  Aligned_cols=185  Identities=17%  Similarity=0.289  Sum_probs=117.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~   82 (238)
                      .+.+...+..+.+.+|+++.|.|.+..                          .|.+.+.|+|+....    .... ...
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~i~W~k~~~~~~~~~l~~~~~~~   57 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQ--------------------------DIRNYLNWYQQKPDGTVKLLIYYTSRL   57 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCEEEEEETTTEE
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecc--------------------------cCCceEEEEEECCCCCCEEEEEEeCCC
Confidence            456778888999999999999999953                          335579999964211    1100 011


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC-----------------cccccc
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP-----------------DISSEE  143 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~-----------------~~~~~~  143 (238)
                      ......|+.... ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..++                 ......
T Consensus        58 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T 3esu_F           58 QSGVPSRFSGSG-SGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQ  136 (250)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CE
T ss_pred             CCCCCCCEEEeC-CCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEe
Confidence            111245675544 34567999999999999999999976432  2233456665431                 111112


Q ss_pred             cCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeEee---c--------CCCCCcceEEEe-----eceEEEEE
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEIIVR---S--------NPPSSQKVFSVE-----SEVLSLTK  204 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~~~---~--------~~~~~~~~~~~~-----~~~l~i~~  204 (238)
                      .+....+.+|+.+.|.|.+.+.|  .+.+.|+++. +......   .        ......+.....     ...|.|.+
T Consensus       137 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  216 (250)
T 3esu_F          137 QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSS  216 (250)
T ss_dssp             ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECC
Confidence            23456788999999999998865  7799999852 2211100   0        000011122211     12699999


Q ss_pred             eecCCCeEEEEEeee
Q psy7941         205 VTRSEMGAYQCIAAN  219 (238)
Q Consensus       205 ~~~~d~G~y~C~~~n  219 (238)
                      +..+|+|.|+|.+.+
T Consensus       217 v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          217 LTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccCEEEEEEEec
Confidence            999999999999997

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.88  E-value=9.6e-22  Score=152.33  Aligned_cols=194  Identities=19%  Similarity=0.220  Sum_probs=126.2

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCce-eeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHR-VSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      .....+.+.+|+++.|.|.+....... ++                +...+.+.+.|++++........-.......++.
T Consensus        12 ~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys----------------~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~   75 (349)
T 4dep_C           12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYS----------------TAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS   75 (349)
T ss_dssp             CCCCCCEEETTSCEEEECTCCCCCSSSCHH----------------HHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE
T ss_pred             ceeeeEEEecCCeEEEEccccccccccccc----------------cccCCCceEEEEECCCCCcccccccccccCceEe
Confidence            346678899999999999986321100 00                0012357899999764221110000001123333


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCccccccc--CCceeecCCCcEEEEEEE-----c
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEET--SGDMMVPEGGSAKLVCKA-----K  163 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~--~~~~~~~~g~~~~l~C~~-----~  163 (238)
                      ....     +|.|.+++.+|+|.|+|.+.+... ....+.|.|..++.......  +....+..|+.+.|.|.+     .
T Consensus        76 ~~~~-----~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  150 (349)
T 4dep_C           76 KEKD-----VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFP  150 (349)
T ss_dssp             EETT-----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSC
T ss_pred             ecCC-----EEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCccccc
Confidence            3222     899999999999999999987533 34456677776554332211  234567889999999985     6


Q ss_pred             cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCC--ccceEEEEEEe
Q psy7941         164 GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPT--VSKRLMLHVHC  235 (238)
Q Consensus       164 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~--~~~~~~l~V~~  235 (238)
                      |.|.+.+.|++ ++..+..       .......+..|.|.++..+|+|.|+|.|.|.. |..  .++.+.|.|..
T Consensus       151 g~p~~~v~W~k-~~~~l~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          151 SSVKPTITWYM-GCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             TTSCCEEEEEE-TTEECCS-------CSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCceEEEee-CCEECCC-------ccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            78999999999 5554421       11223344679999999999999999999987 532  36777777765

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.88  E-value=5.8e-21  Score=140.22  Aligned_cols=185  Identities=13%  Similarity=0.158  Sum_probs=118.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eeee----
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIHE----   81 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~~----   81 (238)
                      .+...+..+.+.+|+++.|.|. .+.                          |.+.+.|+|+.  .....  ....    
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~--------------------------~~~~i~W~k~~~~~~~~~~~~~~~~~~~   54 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTN--------------------------NHNNMYWYRQDTGHGLRLIHYSYGAGST   54 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECS--------------------------CCSEEEEEEEETTTEEEEEEEESSTTCC
T ss_pred             cceECccceEEeCCCEEEEEee-cCC--------------------------CCccEEEEEECCCCCcEEEEEEecCcce
Confidence            4566788899999999999999 321                          24679999952  11110  0000    


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEcCCc----------ccccccC
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVIPPD----------ISSEETS  145 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~~~----------~~~~~~~  145 (238)
                      .......|+.+.......++|.|.+++.+|+|.|+|.+.+...      ....+.|.|...+.          ..+...+
T Consensus        55 ~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p  134 (238)
T 2p1y_A           55 EKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP  134 (238)
T ss_dssp             EECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEEC
T ss_pred             eCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccC
Confidence            0011145777665444567999999999999999999976521      11234677765442          0122234


Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCC-e---eeEeecCC---CCCcceEEE-----eeceEEEEEeecCCCeEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K---EIIVRSNP---PSSQKVFSV-----ESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~---~~~~~~~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~y  213 (238)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++. .   .+......   .........     ....|.|.++..+|+|.|
T Consensus       135 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y  214 (238)
T 2p1y_A          135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY  214 (238)
T ss_dssp             SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEE
T ss_pred             ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEE
Confidence            45678899999999999999999999998532 1   11110000   000111111     124799999999999999


Q ss_pred             EEEeeeCC
Q psy7941         214 QCIAANGV  221 (238)
Q Consensus       214 ~C~~~n~~  221 (238)
                      +|.|.|..
T Consensus       215 ~C~a~n~~  222 (238)
T 2p1y_A          215 FCAAIDTN  222 (238)
T ss_dssp             EEEEEETT
T ss_pred             EEEEeeCC
Confidence            99999974

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=1.1e-20  Score=142.36  Aligned_cols=199  Identities=16%  Similarity=0.221  Sum_probs=123.7

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--ee--eeee------e
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AV--LAIH------E   81 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~--~~~~------~   81 (238)
                      ...|..+.+.+|+++.|.|.+.....                        +.+.+.|+|++..  ..  ....      .
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~   85 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNI------------------------KDSYMHWLRQGPEQGLEWIGWIDPENGDTE   85 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCEEEEEEEETTTTEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCC------------------------CCceEEEEEeCCCCCcEEEEEEecCCCccc
Confidence            45677889999999999999864210                        1356999996421  11  1100      0


Q ss_pred             eEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEcCCc-------------ccc
Q psy7941          82 HVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVIPPD-------------ISS  141 (238)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~~~-------------~~~  141 (238)
                      .......|+.+... ....++|.|.+++.+|+|.|+|.+.+...      ....+.|.|..++.             +.+
T Consensus        86 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~  165 (282)
T 1qok_A           86 YAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVL  165 (282)
T ss_dssp             ECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCE
T ss_pred             cCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEE
Confidence            00112467777654 33567999999999999999999977532      11234677776431             112


Q ss_pred             cccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceE-E--EeeceEEEEEeecCCCe
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVF-S--VESEVLSLTKVTRSEMG  211 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~-~--~~~~~l~i~~~~~~d~G  211 (238)
                      ...+....+.+|+.+.|.|.+.+.| +.+.|++.  +.... .....    ........ .  .....|.|.++..+|+|
T Consensus       166 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  244 (282)
T 1qok_A          166 TQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAA  244 (282)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCE
Confidence            2234456788999999999999988 89999983  22221 11000    00011111 1  12347999999999999


Q ss_pred             EEEEEeeeCCCCCccceEEEEEEe
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      .|+|.+.|..+........|.|..
T Consensus       245 ~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          245 TYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEEEEEeeCCCceEeCCEEEEEec
Confidence            999999985432334445566653

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.88  E-value=8.2e-21  Score=156.70  Aligned_cols=199  Identities=17%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eee-eeeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAI-HEHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~-~~~~~~~   86 (238)
                      +..|..+.+.+|+++.|.|.+......                       ..+.+.|+|++....    ... .......
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~   60 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVN-----------------------RHTRKYWCRQGARGGCITLISSEGYVSSKY   60 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCC-----------------------CcccEEEEeCCCCCCceEEEECCCccccee
Confidence            345778899999999999998642111                       123699999875321    110 0001112


Q ss_pred             CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      .+|+.+... ..+.++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+..  .+....+.+|+.+.|.|.+.+
T Consensus        61 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~--~~~~~~v~~G~~v~l~C~~~~  138 (585)
T 2ocw_A           61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLN--DTKVYTVDLGRTVTINCPFKT  138 (585)
T ss_pred             eceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccC--CCccEEEEcCCCEEEEEEecC
Confidence            346666543 345678999999999999999999764 3345567788887776643  345577899999999999986


Q ss_pred             c-cCCeEEEEeCCCeeeEe-ecC-----CCCCcceEEEe-e-----ceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         165 Y-PTPKITWRREDNKEIIV-RSN-----PPSSQKVFSVE-S-----EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       165 ~-p~~~~~W~~~~~~~~~~-~~~-----~~~~~~~~~~~-~-----~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      . |.+.+.|+++++..... ...     ........... +     ..|.|.++..+|.|.|+|.|.|..|. .+..+.|
T Consensus       139 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l  217 (585)
T 2ocw_A          139 ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADL  217 (585)
T ss_pred             CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc-ccceEEE
Confidence            4 56789999965432111 000     00011111111 2     16999999999999999999999984 4788888


Q ss_pred             EEEee
Q psy7941         232 HVHCT  236 (238)
Q Consensus       232 ~V~~~  236 (238)
                      .|..+
T Consensus       218 ~V~~~  222 (585)
T 2ocw_A          218 QVLKP  222 (585)
T ss_pred             EEccC
Confidence            88764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.88  E-value=2.9e-21  Score=147.51  Aligned_cols=203  Identities=15%  Similarity=0.212  Sum_probs=126.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~   86 (238)
                      ++..|..+.+..|+++.|.|.+.......                     .....+.|+|++........    ...+..
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~---------------------~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~   61 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEV---------------------THVSQLTWARHGESGSMAVFHQTQGPSYSE   61 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSC---------------------CCCCEEEEEETTSSSCSEEEETTTEEEESS
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCc---------------------cceEEEEEEECCCCcceEEEecCCCceecc
Confidence            45677889999999999999997532211                     01125899998654322111    112233


Q ss_pred             CccEEEEEc----CCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHN----DANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      ..|+.....    ...+++|.|.+++.+|+|.|+|.+.+.....  ..+.|.+..+|.....  .....+..++.+.+.|
T Consensus        62 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~--~~~~~~~~~~~~~~~C  139 (313)
T 4fqp_A           62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE--VQKVQLTGEPVPMARC  139 (313)
T ss_dssp             TTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEE--ECCBCCCSSCEEEEEE
T ss_pred             CcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceec--ccceEeecCceEEEEE
Confidence            445544321    1234589999999999999999986543333  3344555556654432  2334566788889999


Q ss_pred             EEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941         161 KAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY  237 (238)
Q Consensus       161 ~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p  237 (238)
                      .+. +.|.+.+.|++++................ ....+.|.+.....+|.|.|+|.|.|..+.. ...++.|.|.++|
T Consensus       140 ~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P  217 (313)
T 4fqp_A          140 VSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT-VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP  217 (313)
T ss_dssp             EEEEEBSCCEEEEEETTCCEEEEEEEECSSTTC-EEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEE
T ss_pred             EccCccCCcEEEeecCCccccccceeeeecccc-cccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCC
Confidence            874 68999999999544332221111111111 1122358888888999999999999987643 3456677777666

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.88  E-value=7.9e-22  Score=168.63  Aligned_cols=184  Identities=20%  Similarity=0.370  Sum_probs=128.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ......+.+|+++.|.|.+..                         +.+++.+.|++++..+..         ..++...
T Consensus       625 ~~~~~~~~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~g~~l~~---------~~~~~~~  670 (816)
T 3dmk_A          625 AFEEGPAQVGQYLTLHCSVPG-------------------------GDLPLNIDWTLDGQAISE---------DLGITTS  670 (816)
T ss_dssp             CCCSSCEESSCEEEEEEBCCC-------------------------SSSCCEEEEEETTBCCCG---------GGTCEEE
T ss_pred             cccccccCCCCeEEEEEEEeC-------------------------CCCCCEEEEEECCeEcCC---------CCCeeEE
Confidence            344556888999999999752                         122447999998765421         2233333


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW  172 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  172 (238)
                      ........|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|.+...  +....+..|+.+.|.|.+.|.|.|.++|
T Consensus       671 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~W  748 (816)
T 3dmk_A          671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTW  748 (816)
T ss_dssp             EETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEEC--CCCEEEETTCCEEEECEEEEESCCEEEC
T ss_pred             EcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeee--cccceecCCCcEEEEEEEecCCCCeEEE
Confidence            33334458999999999999999999885 33455667888888776543  3456788999999999999999999999


Q ss_pred             EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +++++. .................++.|.|.++..+|+|.|+|.|.|..|.. ..++.+..+.
T Consensus       749 ~k~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~v~~~~~~  809 (816)
T 3dmk_A          749 KKAVGD-TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG-LSAVIMISVQ  809 (816)
T ss_dssp             CEECSS-STTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSC-EEEEEEEEEE
T ss_pred             EecCCC-CCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCC-cEEEEEEEee
Confidence            995432 111000001111123355689999999999999999999999966 5555555443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.88  E-value=9.6e-22  Score=150.23  Aligned_cols=182  Identities=18%  Similarity=0.253  Sum_probs=118.9

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ...+..|+++.|.|.+.....                    ..+.|.+.+.|++++..+..        ...++..... 
T Consensus       112 ~~~~~~g~~v~l~C~~~~~~~--------------------~~g~p~~~i~W~k~~~~l~~--------~~~~~~~~~~-  162 (315)
T 1itb_B          112 KQKLPVAGDGGLVCPYMEFFK--------------------NENNELPKLQWYKDCKPLLL--------DNIHFSGVKD-  162 (315)
T ss_dssp             EEEEETTSCEEEECSSCTTTC--------------------TTTTCCCCCEEEETTEECCC--------CSSSEEEETT-
T ss_pred             ceEEecCCCeEEEEecccccc--------------------cCCCCCCEEEEEECCEECCC--------ccceEeecCc-
Confidence            356888999999998732110                    02456778999998766432        1223322222 


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEe-cCCCcc----eeeEEEEE-----cCCcccccccCCceeecCCCcEEEEEEEcccc
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVN-TNPMTK----QMAFLEVV-----IPPDISSEETSGDMMVPEGGSAKLVCKAKGYP  166 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~----~~~~l~v~-----~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  166 (238)
                          +|.|.+++.+|+|.|+|.+. +.....    ....+.+.     .+|.+... ......+..|+.+.|.|.+.|.|
T Consensus       163 ----~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~g~~v~l~C~~~g~P  237 (315)
T 1itb_B          163 ----RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP-ANETMEVDLGSQIQLICNVTGQL  237 (315)
T ss_dssp             ----EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSC-CSEEEECCSSSCEEEEEEEEECT
T ss_pred             ----eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecC-CCCcEEEeCCCcEEEEEEEecCC
Confidence                89999999999999999998 443322    12223333     23333321 12235688999999999999999


Q ss_pred             CCeEEEEeCCCeeeEeecCCCCCcce---------EEEeeceEEEEEeecCC-CeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         167 TPKITWRREDNKEIIVRSNPPSSQKV---------FSVESEVLSLTKVTRSE-MGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       167 ~~~~~W~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.+.|++ ++..+............         .....+.|.|.++..+| +|.|+|.|.|..|.. .+++.|.|.
T Consensus       238 ~p~i~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~  313 (315)
T 1itb_B          238 SDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYP  313 (315)
T ss_dssp             TSEEEEEE-TTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEECC
T ss_pred             CCeeEEEE-CCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEec
Confidence            99999999 55544321100000000         01223479999999999 999999999999944 777777764

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.88  E-value=1.9e-21  Score=144.55  Aligned_cols=183  Identities=15%  Similarity=0.273  Sum_probs=116.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee-----eeEee
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH-----EHVIT   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~-----~~~~~   85 (238)
                      +..+.+.+|+++.|.|.+....                        .+.+.+.|+|+.  ...  .....     .....
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~   62 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFS------------------------LTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSA   62 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSC------------------------TTTSCCEEEEEETTSCCEEEEEECSSSCEEECSS
T ss_pred             CCCccccCCceEEEEEEEeccc------------------------CCCccEEEEEeCCCCCcEEEEEEecCCceeeCcc
Confidence            4456799999999999996421                        014569999963  111  11100     00011


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC----------cceeeEEEEEcCC-------------cccc
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM----------TKQMAFLEVVIPP-------------DISS  141 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~~~~~~l~v~~~~-------------~~~~  141 (238)
                      ...|+.+... ....++|.|.+++.+|+|.|+|.+.+...          ....+.|.|...+             ...+
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  142 (257)
T 1f3r_B           63 LKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKL  142 (257)
T ss_dssp             SSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECS
T ss_pred             cCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEE
Confidence            2467777654 34677999999999999999999987521          1123467776543             1112


Q ss_pred             cccCCceeecCCCcEEEEEEEccccCCeEEEEeC--CCeee-EeecC----CCCCcceE---EEeeceEEEEEeecCCCe
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKEI-IVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~~-~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G  211 (238)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.+.|++.  +.... .....    ........   ......|.|.++..+|+|
T Consensus       143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  222 (257)
T 1f3r_B          143 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVA  222 (257)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCS
T ss_pred             EccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCE
Confidence            2224456688999999999999988889999993  32221 11000    00011111   112347999999999999


Q ss_pred             EEEEEeeeCC
Q psy7941         212 AYQCIAANGV  221 (238)
Q Consensus       212 ~y~C~~~n~~  221 (238)
                      .|+|.|.|..
T Consensus       223 ~Y~C~a~n~~  232 (257)
T 1f3r_B          223 TYFCYQYNNG  232 (257)
T ss_dssp             EEEEEEESSS
T ss_pred             EEEEEEeCCC
Confidence            9999999964

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.88  E-value=1.5e-21  Score=141.07  Aligned_cols=191  Identities=19%  Similarity=0.265  Sum_probs=120.5

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee----eE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE----HV   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~----~~   83 (238)
                      ...+..+.+.+|+++.|.|.+.......                   .+.+.+.+.|+|++...    ......    ..
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~-------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~   64 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSW-------------------YSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVK   64 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCC-------------------SCCCCEEEEEEETTCCGGGCCBSEESCTTSCBC
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCccc-------------------CCCCceEEEEEecCCCCcccceEecCCcccccC
Confidence            3557788999999999999986321000                   01235679999976431    111000    00


Q ss_pred             eecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcCCcccccccCCceeecCCCcEE
Q psy7941          84 ITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ....+|+.+... ....++|.|.+++.+|+|.|+|.+.+...     ....+.|.|..++..+....+.  .+.+|+.+.
T Consensus        65 ~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~  142 (214)
T 2zg1_A           65 PETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTR  142 (214)
T ss_dssp             TTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEE
T ss_pred             ccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEE
Confidence            112356665442 23456899999999999999999976541     1245667887644322111121  267899999


Q ss_pred             EEEEEcc----ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceEEEE
Q psy7941         158 LVCKAKG----YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRLMLH  232 (238)
Q Consensus       158 l~C~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~  232 (238)
                      |.|.+.+    .|.|.+.|++++.....        ..  ....+.|.|..+..+|.|.|+|.|.|..+. ..++++.|.
T Consensus       143 L~C~~~~~~~~~p~p~v~W~~~~~~~~~--------~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          143 LSCSLPGSCEAGPPLTFSWTGNALSPLD--------PE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             EEEECTTCCSCSSCCEEEEESSTTSSSC--------SS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred             EEEEeccCCCCCCCceEEEeCCCCccCC--------CC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence            9999976    37889999995432110        01  134557999999889999999999998652 335555554


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus       213 V  213 (214)
T 2zg1_A          213 V  213 (214)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.88  E-value=8.7e-22  Score=142.04  Aligned_cols=181  Identities=18%  Similarity=0.286  Sum_probs=115.2

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeee---eeeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAI---HEHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~---~~~~   83 (238)
                      |.+..++ .+.+.+|+++.|.|.+.                            +.+.+.|+|+.  .......   ....
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~----------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~   52 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT----------------------------SNNFVSWYQQHAGKAPKLVIYDVNKRP   52 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC----------------------------CSSCEEEEEECTTSCCEEEEBTTTBCC
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC----------------------------CCCeEEEEEECCCCCCEEEEEEecccC
Confidence            4455666 88999999999999985                            24569999952  2111100   0000


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEE----cCCcccccccCCceeecCCCcE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVV----IPPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~  156 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+...   ....+.|.|.    .+|.+....  ....+..|+.+
T Consensus        53 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v  129 (211)
T 3tv3_L           53 SGVPDRFSGSK-SGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFP--PSSEELQANKA  129 (211)
T ss_dssp             TTSCTTEEEEE-ETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEEC--CCHHHHHTTCE
T ss_pred             CCCcCcEEEEc-cCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecC--CchhhhcCCCe
Confidence            11235676655 44567999999999999999999987543   3344567776    344443221  12223369999


Q ss_pred             EEEEEEcccc--CCeEEEEeCCCeeeEee---cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         157 KLVCKAKGYP--TPKITWRREDNKEIIVR---SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       157 ~l~C~~~~~p--~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.|.+.|.+  .+.+.|++ ++..+...   ................|.|..+..+|.|.|+|.|.|..+
T Consensus       130 ~l~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          130 TLVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             EEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             EEEEEeeeecCCCeEEEEEE-CCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            9999998853  46999999 55544210   000000000111223688888888899999999999886

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.88  E-value=8.2e-21  Score=139.90  Aligned_cols=187  Identities=17%  Similarity=0.243  Sum_probs=116.4

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee---
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE---   81 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~---   81 (238)
                      +.+...+..+.+.+|+++.|.|.+....                        .+.+.+.|+|+.. . .  ......   
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~   57 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGIT------------------------ISATSVYWYRERPGEVIQFLVSISYDGT   57 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSC------------------------TTTSCEEEEEECTTSCCEEEEEECSSSC
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCcc------------------------ccCceEEEEEeCCCCCcEEEEEEecCCc
Confidence            3466778899999999999999997521                        1245699999642 1 1  111110   


Q ss_pred             eEee---cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCC--C------cceeeEEEEEcC-------Cccccc
Q psy7941          82 HVIT---NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNP--M------TKQMAFLEVVIP-------PDISSE  142 (238)
Q Consensus        82 ~~~~---~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~--~------~~~~~~l~v~~~-------~~~~~~  142 (238)
                      ....   .++|+.+..... ..++|.|.+++.+|+|.|+|.+.+..  .      ....+.|.|...       |.+...
T Consensus        58 ~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~  137 (242)
T 1hxm_B           58 VRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIF  137 (242)
T ss_dssp             EEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCC
T ss_pred             eecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEE
Confidence            0111   357888765433 67899999999999999999997642  1      122456778753       333222


Q ss_pred             ccCCceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeec-C-CCCCcceEEEeeceEEEEEeecCCCeEEEEEee
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRS-N-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      . +....+..|+.+.|.|.+.|. |. +.+.|++++...+.... . ....... ....+.|.|..... + |.|+|.|.
T Consensus       138 ~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~-~~~~s~L~i~~~~~-~-g~y~C~v~  213 (242)
T 1hxm_B          138 L-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDT-YMKFSWLTVPEKSL-D-KEHRCIVR  213 (242)
T ss_dssp             C-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSS-EEEEEEEEECTGGG-G-SCEEEEEE
T ss_pred             C-CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCc-EEEEEEEEEccccC-C-CEEEEEEE
Confidence            1 222345679999999999885 65 69999995542331110 0 0000011 11223577766554 4 99999999


Q ss_pred             eCCCC
Q psy7941         219 NGVPP  223 (238)
Q Consensus       219 n~~g~  223 (238)
                      |..+.
T Consensus       214 n~~~~  218 (242)
T 1hxm_B          214 HENNK  218 (242)
T ss_dssp             ETTSG
T ss_pred             eCCCC
Confidence            99873

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.88  E-value=2.9e-22  Score=151.40  Aligned_cols=192  Identities=15%  Similarity=0.257  Sum_probs=124.9

Q ss_pred             CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      |...+..+...+..+.+.+|+++.|.|.+.+.  .                       +.+.+.|+++++....      
T Consensus        85 V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~--~-----------------------~~~~v~W~~~~~~~~~------  133 (292)
T 4dkd_C           85 VKDPARPWNVLAQEVVVFEDQDALLPCLLTDP--V-----------------------LEAGVSLVRVRGRPLM------  133 (292)
T ss_dssp             ECCSSCCEEESCSEEEEETTSCEECCEEESSG--G-----------------------GGSSEEEEEGGGCCCC------
T ss_pred             EcCccccccccCCeEEEcCCCcEEEeeeCCCC--C-----------------------cceeEEEEecCCCccc------
Confidence            33333345666778889999999999999631  1                       1256999997554332      


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                        ...++......    .|.|.+++.+|+|.|+|.+.+....  +..+.|.|..    +|.+...  +....+..|+.+.
T Consensus       134 --~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~--~~~~~~~~g~~v~  205 (292)
T 4dkd_C          134 --RHTNYSFSPWH----GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLV--PAELVRIRGEAAQ  205 (292)
T ss_dssp             --SSCCEECCSSS----CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEE--SSCBCCCSSSCEE
T ss_pred             --cCCcccccCCc----eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEcc--CCceeEecCCCEE
Confidence              12222222111    5999999999999999999865432  3356677775    5555432  3334567899999


Q ss_pred             EEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         158 LVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       158 l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |.|.+.+.|. +.+.|++++. .+........... .....+.|.|.++..+|.|.|+|.|.|..|. .+.++.|.|...
T Consensus       206 l~C~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~  282 (292)
T 4dkd_C          206 IVCSASSVDVNFDVFLQHNNT-KLAIPQQSDFHNN-RYQKVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVVES  282 (292)
T ss_dssp             EEEEEEESSSCCEEECCBSSC-CCCCCBEEEEETT-EEEEEEEEEESSCCTTSCEEEEEEEECSSCE-EEEEEEECC---
T ss_pred             EEEEecCCCCceEEEEeCCCc-ccccCccceeccc-eeeeEEEEEECccChhcCeEEEEEEecCCCC-ceeEEEEEEeeC
Confidence            9999988665 4788888443 2211100000000 1223457999999999999999999999994 488888888764


Q ss_pred             c
Q psy7941         237 Y  237 (238)
Q Consensus       237 p  237 (238)
                      +
T Consensus       283 ~  283 (292)
T 4dkd_C          283 A  283 (292)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.88  E-value=2.3e-21  Score=137.97  Aligned_cols=171  Identities=16%  Similarity=0.244  Sum_probs=108.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee-----E-ee-
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH-----V-IT-   85 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-----~-~~-   85 (238)
                      ..+..+.+.+|+++.|.|.+...                         .+.+.+.|++++..+.......     . .. 
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~-------------------------~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~   57 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAG-------------------------EKVNFITWLFNETSLAFIVPHETKSPEIHVTN   57 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCC-------------------------SCCCEEEEEETTEEEEEEECCSSSCCEEEECC
T ss_pred             CCCeEEEEEecCeEEEeccCCCc-------------------------ccccEEEEEECCEEEEEEecccCCCCceeecC
Confidence            45778899999999999998521                         1234699999754332111100     0 00 


Q ss_pred             --cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCC-cEEEEEE
Q psy7941          86 --NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCK  161 (238)
Q Consensus        86 --~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~-~~~l~C~  161 (238)
                        ..+|+.+.    .+.+|.|.+++.+|+|.|.|.+.+... ....+.|.|..++......... .....|. .+.|.|.
T Consensus        58 ~~~~~R~~~~----~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~  132 (193)
T 2if7_A           58 PKQGKRLNFT----QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCS  132 (193)
T ss_dssp             HHHHTTEEEC----TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEE
T ss_pred             ccccccEEEC----CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEE
Confidence              11355543    245899999999999999999977543 2345567776554322111111 1233455 7999999


Q ss_pred             Ecc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC-CCeEEEEEeeeCCCCCccceE
Q psy7941         162 AKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS-EMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       162 ~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      +.+ .|.|.+.|++ ++..+.              .+..|.|.....+ |.|.|+|.|.|..|.. +..+
T Consensus       133 ~~g~~p~p~i~W~~-~g~~l~--------------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~  186 (193)
T 2if7_A          133 VEDADDNVSFRWEA-LGNTLS--------------SQPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSV  186 (193)
T ss_dssp             EESCCTTCEEEEEE-TTEEEE--------------SSSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEE
T ss_pred             EecCCCceEEEEEe-CCEEcC--------------CCCeEEEEeccCcCCCCcEEEEEECCCCcc-cccc
Confidence            988 4588999999 554331              1234666544454 8999999999999843 4443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.87  E-value=5.9e-21  Score=150.55  Aligned_cols=198  Identities=22%  Similarity=0.392  Sum_probs=136.0

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeee---------------eecCCeEEeccC----CCCceEEEEeCCceeeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTH---------------VNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIH   80 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~   80 (238)
                      +...|.+.|+|.+.|..+...+..+.+.+               +..|+.+.+.|.    .|.+.+.|++++.....   
T Consensus        84 ~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~---  160 (404)
T 3p3y_A           84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT---  160 (404)
T ss_dssp             CTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCC---
T ss_pred             CCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccC---
Confidence            44578999999999887766544443332               456788888775    47889999998654322   


Q ss_pred             eeEeecCccEEEEEcCCCeEEEEEcccCccc-CeEEEEEEecCCCc----ceeeEEEEEcC-------Ccccccc-cCCc
Q psy7941          81 EHVITNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNPMT----KQMAFLEVVIP-------PDISSEE-TSGD  147 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~----~~~~~l~v~~~-------~~~~~~~-~~~~  147 (238)
                           ...++.....    .+|.|.+++.+| +|.|+|.+.+....    .....+.+...       |.+.... ....
T Consensus       161 -----~~~~~~~~~~----~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~  231 (404)
T 3p3y_A          161 -----QDKRVSQGHN----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS  231 (404)
T ss_dssp             -----CCSSEEECTT----SCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEE
T ss_pred             -----CCCcEEEcCC----CcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCC
Confidence                 1223332222    279999999999 59999999875332    12234555432       2221111 1123


Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+.+|+.+.|.|.+.|.|.+.+.|++ ++..+...      .......+..|.|.++..+|.|.|+|.|.|..|. .+.
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~  303 (404)
T 3p3y_A          232 QMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPSD------KAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRH  303 (404)
T ss_dssp             EEEETTSCEEEECCBCCSSCCEEEEEE-TTBCCCTT------TEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEE
T ss_pred             ceEecCCCEEEEEEECCCCCCcEEEEE-CCEECCCC------cccccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEE
Confidence            567899999999999999999999999 44433211      1122333568999999999999999999999994 578


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      .+.|.|..+|
T Consensus       304 ~~~l~V~~~p  313 (404)
T 3p3y_A          304 TISVRVKAAP  313 (404)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEeCCC
Confidence            8899998876

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=1.7e-20  Score=137.89  Aligned_cols=188  Identities=20%  Similarity=0.265  Sum_probs=119.2

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee-eeee--eeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV-LAIH--EHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~-~~~~--~~~   83 (238)
                      ..+...+..+.+.+|+++.|.|.+.....                      ..+.+.+.|+|+..  ... ....  ...
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~----------------------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~   59 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVD----------------------IFGVGFLHWYQQKPGQPPKLLIYRASNLE   59 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCE----------------------ETTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccc----------------------cCCCceEEEEEECCCCCceEEEEEecccC
Confidence            35667788899999999999999964320                      00145699999632  111 1000  000


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc----ccccccCCceeecCCCcEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD----ISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~----~~~~~~~~~~~~~~g~~~~  157 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..++.    ......+....+.+|+.+.
T Consensus        60 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~  138 (240)
T 1moe_A           60 SGIPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVK  138 (240)
T ss_dssp             TTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEE
T ss_pred             cCCCccEEEEe-cCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEE
Confidence            11245777755 34567999999999999999999977532  23455677775432    1111224456788999999


Q ss_pred             EEEEEcccc--CCeEEEEeCC-Ceee--Ee-ec--------CCCCCcceEEEe-----eceEEEEEeecCCCeEEEEEee
Q psy7941         158 LVCKAKGYP--TPKITWRRED-NKEI--IV-RS--------NPPSSQKVFSVE-----SEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       158 l~C~~~~~p--~~~~~W~~~~-~~~~--~~-~~--------~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      |.|.+.+.|  .+.+.|++++ +...  .. ..        ............     ...|.|.++..+|+|.|+|.|.
T Consensus       139 L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  218 (240)
T 1moe_A          139 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF  218 (240)
T ss_dssp             EEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEE
Confidence            999999876  4599999842 1111  00 00        000111222211     2479999999999999999998


Q ss_pred             e
Q psy7941         219 N  219 (238)
Q Consensus       219 n  219 (238)
                      +
T Consensus       219 ~  219 (240)
T 1moe_A          219 G  219 (240)
T ss_dssp             S
T ss_pred             e
Confidence            5

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.87  E-value=2e-20  Score=139.03  Aligned_cols=200  Identities=18%  Similarity=0.242  Sum_probs=122.9

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee---------ee
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH---------EH   82 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~---------~~   82 (238)
                      +..+..+.+.+|+++.|.|.+....                        .+.+.+.|+|..........         ..
T Consensus        12 ~~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~   67 (257)
T 3gkz_A           12 LQESGPSLVKPSQTLSLTCSVTGDS------------------------VTSGYWSWIRQFPGNKLDYMGYISYRGSTYY   67 (257)
T ss_dssp             EEEECCSEECTTCCEEEEEEEEESC------------------------CSSCEEEEEEECTTSCEEEEEEEETTCCEEE
T ss_pred             EECCCCeEEcCCCcEEEEEEEEccc------------------------ccceEEEEEEECCCCCcEEEEEEecCCcEEe
Confidence            4556777899999999999997521                        12457999995321111000         00


Q ss_pred             EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcC------------Cccccccc
Q psy7941          83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIP------------PDISSEET  144 (238)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~------------~~~~~~~~  144 (238)
                      ......|+.+.... ...++|.|.+++.+|+|.|+|.+.+..   .  ....+.|.|..+            +.+.+...
T Consensus        68 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  147 (257)
T 3gkz_A           68 NPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS  147 (257)
T ss_dssp             CTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS
T ss_pred             cccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC
Confidence            01124577776542 457789999999999999999997751   1  123445777654            12222333


Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCC-Ce-e-eEeecC----CCCCcceEEE---eeceEEEEEeecCCCeEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRRED-NK-E-IIVRSN----PPSSQKVFSV---ESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~-~~-~-~~~~~~----~~~~~~~~~~---~~~~l~i~~~~~~d~G~y  213 (238)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++.. +. . ......    ..........   ....|.|.++..+|+|.|
T Consensus       148 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  227 (257)
T 3gkz_A          148 PAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASY  227 (257)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence            455778999999999999998777 99999832 11 1 111100    0000111111   123699999999999999


Q ss_pred             EEEeeeCCCCCccceEEEEEEe
Q psy7941         214 QCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       214 ~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +|.+.+........-..|.|..
T Consensus       228 ~C~~~~~~~~~fg~gt~l~v~~  249 (257)
T 3gkz_A          228 FCHQWSSFPFTFGSGTKLEIKR  249 (257)
T ss_dssp             EEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEccCCceEEcCCEEEEEEe
Confidence            9999875432223333455543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.87  E-value=3.2e-20  Score=136.72  Aligned_cols=184  Identities=18%  Similarity=0.263  Sum_probs=116.5

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-eeeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-HEHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-~~~~   83 (238)
                      +.+...+..+.+.+|+++.|.|.+..                          .|.+.+.|+|+..  ..  .... ....
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~   55 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQ--------------------------SIGNNLHXYQQKSHESPRLLIKYASQSI   55 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCC--------------------------CCCceEEEEEeCCCCCceEEEEeccccC
Confidence            45677888899999999999999853                          2355799999642  11  1100 0000


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc------------ccccccCCcee
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD------------ISSEETSGDMM  149 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~------------~~~~~~~~~~~  149 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+....  ...+.|.|..++.            +.. ..+....
T Consensus        56 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~  133 (242)
T 2znx_A           56 SGIPSRFSGSG-SGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQL-QESGPSL  133 (242)
T ss_dssp             TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEE-EEECCSE
T ss_pred             CCCCCCEEEec-CCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceee-ecCCcce
Confidence            01245777654 345669999999999999999999765321  2345677765542            111 1122345


Q ss_pred             ecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeE--eec-CC-------CCCcceEEE-----eeceEEEEEeecCCCe
Q psy7941         150 VPEGGSAKLVCKAKGYP--TPKITWRRED-NKEII--VRS-NP-------PSSQKVFSV-----ESEVLSLTKVTRSEMG  211 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~--~~~-~~-------~~~~~~~~~-----~~~~l~i~~~~~~d~G  211 (238)
                      +.+|+.+.|.|.+.+.|  .+.+.|++++ +....  ... ..       .........     ....|.|.++..+|+|
T Consensus       134 v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G  213 (242)
T 2znx_A          134 VKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTA  213 (242)
T ss_dssp             ECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCE
Confidence            88999999999998865  5789999843 22111  100 00       001122211     1237999999999999


Q ss_pred             EEEEEeeeC
Q psy7941         212 AYQCIAANG  220 (238)
Q Consensus       212 ~y~C~~~n~  220 (238)
                      .|+|.|.|.
T Consensus       214 ~Y~C~a~~~  222 (242)
T 2znx_A          214 TYYCANXDG  222 (242)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEeccCC
Confidence            999999985

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.87  E-value=2.8e-21  Score=140.20  Aligned_cols=181  Identities=18%  Similarity=0.251  Sum_probs=111.3

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeeeeee-------e--
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLAIHE-------H--   82 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~~~-------~--   82 (238)
                      ..+..+.+.+|+++.|.|.+....                        .+.+.+.|+|+. +........       .  
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~   60 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYM------------------------FTNYGMNWVKQAPGKALKLMGWINPYTGESTF   60 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSC------------------------GGGSEEEEEEECTTSCEEEEEEECSSSCCEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcc------------------------cccceEEEEEeCCCCCcEEEEEEecCCCceEe
Confidence            345667899999999999997421                        014569999974 221111000       0  


Q ss_pred             EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC----CcccccccCCceeecC
Q psy7941          83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP----PDISSEETSGDMMVPE  152 (238)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~  152 (238)
                      .....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...     ....+.|.|...    |.+...  .....+..
T Consensus        61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~  138 (219)
T 1c1e_H           61 ADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPL--APGSAAQT  138 (219)
T ss_dssp             CGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEE--CCCSSSCC
T ss_pred             CcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEe--cCcccccc
Confidence            00124677766532 3467999999999999999999987541     123456677653    222221  11223567


Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |+.+.|.|.+.| +|.| .+.|++++ ..+....... ..... ....+.|.|. ....|.|.|+|.|.|..|
T Consensus       139 g~~v~L~C~~~g~~P~p~~v~W~~~g-~~~~~~~~~~~~~~~~-~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~  208 (219)
T 1c1e_H          139 NSMVTLGCLVKGYFPEPVTVTWNSGS-LSSGVHTFPAVLQSDL-YTLSSSVTVP-SSPRPSETVTCNVAHPAS  208 (219)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEESSSC-EEEEEEEEEE-SSSTTTSCCEEEEEEGGG
T ss_pred             CCeEEEEEEcccccCCCeEEEEEeCC-cccceEecCCcccCCe-EEEEEEEEEe-cccCCCCEEEEEEEeCCC
Confidence            999999999998 8998 99999954 3321111100 00011 1122357774 444466999999999887

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.87  E-value=3.6e-21  Score=145.21  Aligned_cols=177  Identities=18%  Similarity=0.219  Sum_probs=124.7

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.+...+..+.+.+|+++.|.|.+..                              .+.|++++.....        
T Consensus         2 ~p~p~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~~~--------   43 (289)
T 3ejj_X            2 DPAPVIEPSGPELVVEPGETVTLRCVSNG------------------------------SVEWDGPISPYWT--------   43 (289)
T ss_dssp             --CCEEESCSSEEEECTTCCEEEEEECSS------------------------------CCEEECSCSSSSE--------
T ss_pred             CCCcEecCCCceEEECCCCCEEEEEEeCC------------------------------cEEEccCCCceEE--------
Confidence            35677777888899999999999999852                              3899986543210        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                            . .......+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.... ..+....+.+|+.+.|.|.+.+
T Consensus        44 ------~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~-~~~~~~~v~~g~~v~L~C~~~~  115 (289)
T 3ejj_X           44 ------L-DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWN-LLAQEVTVVEGQEAVLPCLITD  115 (289)
T ss_dssp             ------E-CCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEE-ESCSEEEEETTSCEEECEEESC
T ss_pred             ------E-eccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCccee-cccceEEEecCCceEeEEEccC
Confidence                  0 01112238999999999999999998654 3345666777777665422 2345677889999999999998


Q ss_pred             ccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         165 YPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       165 ~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|.+. +.|++.++..+..      ........+..|.|.++..+|.|.|+|.+.|..+...+..+.|.|.
T Consensus       116 ~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          116 PALKDSVSLMREGGRQVLR------KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             GGGGGSEEEEEGGGEECCT------TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCcceEEEEEecCCeecCC------CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence            77664 9998755544421      1222334456799999999999999999995443355778888887

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=3.8e-20  Score=137.21  Aligned_cols=185  Identities=16%  Similarity=0.150  Sum_probs=118.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+. ..+.+|++++|.|.+..                           +.+.+.|+|++..+.......    
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~---------------------------~~~~~~W~k~g~~~~~~~~~~----   53 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV---------------------------RFQHFLLHREGKFKDTLHLIG----   53 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS---------------------------CCSEEEEEEESTTCEEEEEEC----
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC---------------------------CCcEEEEEECCCCCCcceeee----
Confidence            4677776665 67889999999999852                           134699999876542211000    


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC------CcceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP------MTKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~  157 (238)
                        +.   ........|.|.+++.+|+|.|+|.+.+..      ..+..+.|.|...   |.+...  + ...+.+|++++
T Consensus        54 --~~---~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~--p-~~~V~~G~~vt  125 (257)
T 1b6u_A           54 --EH---HDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ--P-GPTVLAGESVT  125 (257)
T ss_dssp             --BC---CTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECS--S-CTTCBTTCEEE
T ss_pred             --ec---cCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEcc--C-CCccCCCCEEE
Confidence              00   011123489999999999999999996421      1234556777643   233221  2 23578999999


Q ss_pred             EEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC----CCCccceEEEEE
Q psy7941         158 LVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV----PPTVSKRLMLHV  233 (238)
Q Consensus       158 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~~~~~~~l~V  233 (238)
                      |.|.+.+. .+.+.|++++. .+........  .........|.|.++.  |+|.|+|.+.+..    ....+..+.|.|
T Consensus       126 L~C~~~~~-~~~~~w~k~g~-~~~~~~~~~~--~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V  199 (257)
T 1b6u_A          126 LSCSSRSS-YDMYHLSREGE-AHERRFSAGP--KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSV  199 (257)
T ss_dssp             EEEECSSC-CSEEEEEETTS-SCEECCBCBC--CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECC
T ss_pred             EEEeCCCC-CcEEEEEECCc-ccCccccccc--ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEE
Confidence            99998775 46999999543 3322110000  0000124578999998  9999999999753    234467788888


Q ss_pred             Eeec
Q psy7941         234 HCTY  237 (238)
Q Consensus       234 ~~~p  237 (238)
                      ..+|
T Consensus       200 ~g~p  203 (257)
T 1b6u_A          200 TGNP  203 (257)
T ss_dssp             BCCC
T ss_pred             eccC
Confidence            7664

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.87  E-value=3.9e-20  Score=137.41  Aligned_cols=187  Identities=18%  Similarity=0.296  Sum_probs=120.2

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeee--eee
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAI--HEH   82 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~--~~~   82 (238)
                      ..+...+..+.+.+|+++.|.|.+...                          |.+.+.|+|....  .  ....  ...
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~   57 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYS--------------------------ATPYLFWYVQYPRQGPQMLLKYYSGDP   57 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECS--------------------------SCCEEEEEEECTTSCCEEEEEECSSCS
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCC--------------------------CCceEEEEEECCCCCeEEEEEEccCCc
Confidence            456778889999999999999999643                          3567999985321  1  1100  111


Q ss_pred             EeecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC------------------Cc
Q psy7941          83 VITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP------------------PD  138 (238)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~------------------~~  138 (238)
                      .....+|+.+.. .....++|.|.+++.+|+|.|+|.+.+...     ....+.|.|...                  ..
T Consensus        58 ~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  137 (256)
T 3tf7_C           58 VVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE  137 (256)
T ss_dssp             EEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------
T ss_pred             ccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCc
Confidence            123356777653 344677999999999999999999976432     122345666641                  11


Q ss_pred             ccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e-e-eEeec-CC------CCCcceE----EEeeceEEEEE
Q psy7941         139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K-E-IIVRS-NP------PSSQKVF----SVESEVLSLTK  204 (238)
Q Consensus       139 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~-~-~~~~~-~~------~~~~~~~----~~~~~~l~i~~  204 (238)
                      +.+...+....+.+|+.+.|.|.+.+. .+.+.|++... . . ..... ..      .....+.    ......|.|.+
T Consensus       138 ~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~  216 (256)
T 3tf7_C          138 AAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLES  216 (256)
T ss_dssp             CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESS
T ss_pred             cEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECC
Confidence            222233455677899999999999876 67999998321 1 1 11100 00      0000111    11234799999


Q ss_pred             eecCCCeEEEEEeeeCCC
Q psy7941         205 VTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       205 ~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+|+|.|+|.|.|..|
T Consensus       217 v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          217 ASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             CCGGGCEEEEEEEEEETT
T ss_pred             CCHHHCEEEEEEecCCCC
Confidence            999999999999999866

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.87  E-value=1.4e-20  Score=140.00  Aligned_cols=185  Identities=16%  Similarity=0.160  Sum_probs=118.3

Q ss_pred             EEecCCEEEEeEEecCCCce-eeeee---------eeeeeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeEee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHR-VSSSV---------TDTHVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      +...|.+.|.|.+.+..+.. +...+         ....+..|+.+.+.|.    .|.+.+.|++++..+....      
T Consensus        55 ~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------  128 (262)
T 3rjd_A           55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------  128 (262)
T ss_dssp             CCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------
T ss_pred             CCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------
Confidence            45667778888876643221 11111         1112445666655543    4677999999776542110      


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                             .     ...|.|.+++.+|+|.|+|.+.+... ....+.+.|...+............+..|+.+.|.|.+.+
T Consensus       129 -------~-----~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~  196 (262)
T 3rjd_A          129 -------W-----NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKL  196 (262)
T ss_dssp             -------E-----CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCC
T ss_pred             -------C-----CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEccc
Confidence                   0     11899999999999999999987642 3344567776431111111122445788999999999999


Q ss_pred             ccC-C----eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc--cceEEEEEE
Q psy7941         165 YPT-P----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV--SKRLMLHVH  234 (238)
Q Consensus       165 ~p~-~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~--~~~~~l~V~  234 (238)
                      .|. |    .+.|++ ++..+..           ......|.|.++..+|.|.|+|.|.|..|...  +..+.|.|+
T Consensus       197 ~p~~p~~~~~~~w~~-~~~~~~~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          197 LLQRPGLQLYFSFYM-GSKTLRG-----------RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             CCC-----EEEEEEE-TTEEEEE-----------EESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             CCCCCCccEEEEEEe-CCcEecc-----------cCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence            875 5    378888 5544432           12345799999999999999999999999532  445555553

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.87  E-value=1e-20  Score=140.27  Aligned_cols=190  Identities=19%  Similarity=0.245  Sum_probs=111.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ceeeee-ee--e-e
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TKAVLA-IH--E-H   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~-~~--~-~   82 (238)
                      +|.+...+..+.+.+|+++.|.|.+......                     ....+.+.|+|++ +..... ..  . .
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~g~~~~~~~~~~~~~   96 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLY---------------------SNGKTYLNWLLQRPGQSPKRLIYLVSKL   96 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBC---------------------SSSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccc---------------------cCCCCceEEEEeCCCCCceEEEEecccc
Confidence            4555556667777777777777776432100                     0003679999853 221110 00  0 0


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ......|+.+.. ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+....  .......|+.+.
T Consensus        97 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~--~~~~~~~g~~v~  173 (254)
T 2c1o_A           97 DSGDPDRFTGSG-SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFP--PSSEQLTSGGAS  173 (254)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEEC--CCHHHHHTTEEE
T ss_pred             CCCccceEEEec-CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeec--CChhhccCCcEE
Confidence            011235776654 345669999999999999999999765332  1223566653   33333211  111223477999


Q ss_pred             EEEEEcc-ccC-CeEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         158 LVCKAKG-YPT-PKITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       158 l~C~~~~-~p~-~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.|.+.| .|. +.+.|+++ +..+...    ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus       174 l~C~~~g~~p~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          174 VVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             EEEEEEEEBSSCCEEEEEES-SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             EEEEEecccCCCcEEEEEEC-CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence            9999988 444 36999994 4443221    000000010111234799999999999999999999876

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.87  E-value=8.7e-21  Score=140.57  Aligned_cols=190  Identities=20%  Similarity=0.247  Sum_probs=117.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eee---eeee-ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAV---LAIH-EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~---~~~~-~~   82 (238)
                      .+.+...+..+.+.+|+++.|.|.+.+....                     ....+.+.|+|++. ...   .... ..
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~   92 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVH---------------------SNGHTYLEWYLQRPGQSPKLLIYQVSTR   92 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccc---------------------cCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence            4556677888999999999999998643200                     00135699999652 111   1000 00


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      .....+|+.+.. ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+...  .....+..|+.+.
T Consensus        93 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~--~~~~~~~~g~~v~  169 (252)
T 3bkj_L           93 FSGVPDRFSGSG-SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIF--PPSSEQLTSGGAS  169 (252)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEE--CCCHHHHHHTEEE
T ss_pred             cCCcCCceEEEc-cCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEe--CCChhhcCCCcEE
Confidence            011245776655 345679999999999999999999765321  1234566653   2333221  1111233688999


Q ss_pred             EEEEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         158 LVCKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       158 l~C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.|.+.| .|.+ .+.|++ ++..+...    ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus       170 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  239 (252)
T 3bkj_L          170 VVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  239 (252)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             EEEEEeeEeCCCcEEEEEE-CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCC
Confidence            9999988 5554 799999 55543211    000000111112234689999999999999999999775

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.87  E-value=9.8e-21  Score=157.92  Aligned_cols=172  Identities=17%  Similarity=0.278  Sum_probs=121.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ...+....+.+|+.+.|.|.+.                          +.|.+.++|++++..+..         .    
T Consensus       385 ~~~~~~~~~~~g~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~~~~---------~----  425 (642)
T 1e07_A          385 TISPSYTYYRPGVNLSLSCHAA--------------------------SNPPAQYSWLIDGNIQQH---------T----  425 (642)
T ss_pred             eecCCceEecCCCcEEEEEEcC--------------------------ccCCCeEEEEECCEEcCC---------C----
Confidence            4455667788999999999984                          345778999997654310         1    


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCC-Cccee--eEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQM--AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                              ..|.|.+++.+|+|.|+|.+.|.. .....  ..+.|..++............+.+|+.+.|.|.+.+ |.+
T Consensus       426 --------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~~~  496 (642)
T 1e07_A          426 --------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNT  496 (642)
T ss_pred             --------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-CCc
Confidence                    179999999999999999998753 23333  334444322111111233456789999999999984 788


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.|++ ++..+....     .......+..|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus       497 ~i~W~~-~g~~l~~~~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p  559 (642)
T 1e07_A          497 TYLWWV-NGQSLPVSP-----RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP  559 (642)
T ss_pred             EEEEEE-CCEeCCCCC-----cEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCC
Confidence            999999 554443211     111222345899999999999999999999999766678889998655

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.87  E-value=2.3e-21  Score=140.97  Aligned_cols=179  Identities=17%  Similarity=0.313  Sum_probs=112.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-ee---eeeee------eeEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KA---VLAIH------EHVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~---~~~~~------~~~~   84 (238)
                      +..+.+.+|+++.|.|.+.....                        +.+.+.|+|+.. ..   .....      ....
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~   62 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTF------------------------TDYYMSWVRQPPGKALEWLGFIRNKANGYTTEY   62 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEECCGGGTTCEEE
T ss_pred             CCceeEcCCCEEEEEEEecCccC------------------------CCCcEEEEEECCCCCcEEEEEEccCCccccccc
Confidence            45678999999999999974210                        134699999642 11   11100      0000


Q ss_pred             --ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc----CCcccccccCCceeec
Q psy7941          85 --TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI----PPDISSEETSGDMMVP  151 (238)
Q Consensus        85 --~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~~~~~~~~~~~~~~~~  151 (238)
                        ...+|+.+.... ...++|.|.+++.+|+|.|.|.+.+...      ....+.|.|..    +|.+....  ....+.
T Consensus        63 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~  140 (222)
T 1q9r_B           63 SPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQ  140 (222)
T ss_dssp             CTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEEC--CCSCCC
T ss_pred             CcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcc--cccccc
Confidence              124677776543 4577999999999999999999976531      22345677764    22222211  112355


Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|+.+.|.|.+.| +|.| .+.|+++ +..+..... ...... .....+.|.|..+..+| |.|+|.|.|..|
T Consensus       141 ~g~~v~L~C~~~g~~P~p~~v~W~~~-g~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~  211 (222)
T 1q9r_B          141 TNSMVTLGCLVKGYFPEPVTVTWNSG-SLSSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  211 (222)
T ss_dssp             CSSEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEEEEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEccEECCCCEEEEecC-CeEcceEeccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCC
Confidence            7999999999998 4888 9999994 433211000 000011 11223468888888889 999999999988

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.87  E-value=1.5e-20  Score=135.99  Aligned_cols=183  Identities=20%  Similarity=0.253  Sum_probs=112.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~~   85 (238)
                      +.. |..+.+.+|+++.|.|.+.....                        +.+.+.|+|++.  .......   .....
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~   58 (216)
T 2xzc_L            4 LTQ-PPSVSAAPGQKVTISCSGSSSNI------------------------GNNYVSWYQQLPGTAPKLLIYDNNKRPSG   58 (216)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCTTTG------------------------GGSCCEEEEECTTSCCEEEEBTTTBCCTT
T ss_pred             EEC-CCcEEecCCCeEEEEEEeecCCC------------------------CCCeEEEEEeCCCCCcEEEEEecCccCCC
Confidence            344 67789999999999999532110                        135699999642  1110000   00011


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ...|+.... ....++|.|.+++.+|+|.|+|.+.+...   ....+.|.|..   +|.+.... +. .....|+.+.|.
T Consensus        59 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~-~~-~~~~~g~~v~L~  135 (216)
T 2xzc_L           59 IPDRFSGSK-SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFP-PS-DEQLKSGTASVV  135 (216)
T ss_dssp             CCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEEC-CC-HHHHHTTEEEEE
T ss_pred             CCCceEEec-cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeC-CC-hhhccCCcEEEE
Confidence            235676654 34566999999999999999999987543   12234566653   33332211 11 112358899999


Q ss_pred             EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.+.| .|.+ .+.|++ ++..+...    ..............+.|.|..+..+|.|.|+|.|.|...
T Consensus       136 C~~~g~~P~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          136 CLLNNFYPREAKVQWKV-DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             EEEEEEBSSCCEEEEEE-TTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             EEEEeEcCCceEEEEEE-CCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence            99988 5665 899999 55543221    000000111112233688999999999999999999875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=1.2e-22  Score=156.48  Aligned_cols=186  Identities=20%  Similarity=0.307  Sum_probs=64.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .++.+...+..+.+.+|+++.|.|.+...                         .|.+.+.|++++..+..         
T Consensus         7 ~p~p~~~~~~~~~v~~G~~v~l~C~~~~~-------------------------~p~~~v~W~k~g~~~~~---------   52 (334)
T 1ry7_B            7 VPGPEPGQQEQLVFGSGDAVELSCPPPGG-------------------------GPMGPTVWVKDGTGLVP---------   52 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCcCcEEEecCCcEEEEeeCCCC-------------------------CCCcceEEEECCeeCCC---------
Confidence            33444455888899999999999998632                         13457999998765321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC----------------------cccccc-
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP----------------------DISSEE-  143 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~----------------------~~~~~~-  143 (238)
                      ..++....     .+|.|.+++.+|+|.|+|.+.+.+.......+.|...+                      .+.... 
T Consensus        53 ~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~  127 (334)
T 1ry7_B           53 SERVLVGP-----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER  127 (334)
T ss_dssp             -----------------------------------------------------------------------CCCCSCCTT
T ss_pred             cccEEecc-----ceEEEeecccccCEEEEEEEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEecccc
Confidence            22333322     28999999999999999999776333444455555332                      221110 


Q ss_pred             -cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         144 -TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       144 -~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                       ......+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.....  ............|.|.++..+|.|.|+|.+.|..|
T Consensus       128 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (334)
T 1ry7_B          128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHR--IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG  204 (334)
T ss_dssp             CCCCEEEEETTCCEEEECCCCCSSCCEEECCB-TTBCCCTTSS--TTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTE
T ss_pred             ccceeEEecCCCcEEEEEEccCCCCCeEEEEE-CCEECccccc--ccceecccceEEEEECCCCcccCEEEEEEEEeCCC
Confidence             1123567889999999999999999999999 4444322111  00111122345799999999999999999999998


Q ss_pred             CCccceEEEEEEe
Q psy7941         223 PTVSKRLMLHVHC  235 (238)
Q Consensus       223 ~~~~~~~~l~V~~  235 (238)
                      . .+..+.|.|..
T Consensus       205 ~-~~~~~~l~V~~  216 (334)
T 1ry7_B          205 S-IRQTYTLDVLE  216 (334)
T ss_dssp             E-EEEEEEEEEEC
T ss_pred             C-EEEEEEEEEec
Confidence            4 47778888875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.86  E-value=3.7e-21  Score=152.72  Aligned_cols=181  Identities=12%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      +.++..+..+.|.+|+++.|.|.+..                          .|.+.+.|++++..+...         .
T Consensus        49 ~~~~~~~~~v~V~~G~~v~L~C~v~g--------------------------~P~p~i~W~~~~~~l~~~---------~   93 (423)
T 3qs7_E           49 SGTVYEAAAVEVDVSASITLQVLVDA--------------------------PGNISCLWVFKHSSLNCQ---------P   93 (423)
T ss_dssp             -------CEEEECSSCCEEEEEECSC--------------------------CSSCEEEEEETTEEECCC---------C
T ss_pred             CcceeccccEEEecCCcEEEEEEEEc--------------------------CCCCeEEEEECCCccCcc---------c
Confidence            45556667899999999999999853                          457789999987653211         0


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT  167 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  167 (238)
                      .+  ........+|.|.+++.+|+|.|+|.+.|... ....+.|.|..+|.+.. ..+  ..+..|+.+.|.|.+.|.|.
T Consensus        94 ~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~-~~p--~~~~~~~~~~L~C~a~G~P~  168 (423)
T 3qs7_E           94 HF--DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRP--YFRKMENQDALVCISESVPE  168 (423)
T ss_dssp             BC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CE-EEE--EEEECSSSSCEEEEEEESSC
T ss_pred             ee--ccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccc-cCC--cEeccCCceEEEEEEeeecC
Confidence            11  01111223799999999999999999987633 33345566654444321 111  23455778899999999999


Q ss_pred             CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.++|++++. ....... ..... .......     +...|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus       169 P~i~W~k~~~-~~~~~~~-~~~~~-~~~~~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p  230 (423)
T 3qs7_E          169 PIVEWVLCDS-QGESCKE-ESPAV-VKKEEKV-----LHELFGTDIRCCARNELGRECTRLFTIDLNQTP  230 (423)
T ss_dssp             CEEEEEEC---------------C-EEECCSE-----ECCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred             CeEEEEECCC-CCccccc-ccccc-ccccceE-----EecccCeEEEEEEEcCCCCcceeeEEEEEecCC
Confidence            9999999544 2211000 00000 0111111     257899999999999999654555777776544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.86  E-value=5.5e-21  Score=139.49  Aligned_cols=195  Identities=16%  Similarity=0.237  Sum_probs=114.7

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eee---eeee----eeEe
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAV---LAIH----EHVI   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~---~~~~----~~~~   84 (238)
                      ..+..+.+.+|++++|.|.+.....                        ..+.+.|+|++. ...   ....    ....
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~   60 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTF------------------------TNYWINWVKQRPGQGLEWIGNIYPGSSYTHY   60 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCcc------------------------ccceEEEEEeCCCCCcEEEEEEeccCCceee
Confidence            3456778999999999999974311                        034699999642 211   1110    0001


Q ss_pred             --ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEc----CCcccccccCCceeecCCCc
Q psy7941          85 --TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVI----PPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        85 --~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~  155 (238)
                        ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..    +|.+....  ....+..|+.
T Consensus        61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~~g~~  138 (227)
T 1mju_H           61 NEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA--PVCGDTSGSS  138 (227)
T ss_dssp             CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC--CCC------C
T ss_pred             CCccCCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec--CCccccCCCc
Confidence              124688776542 4577999999999999999999976431  12234677764    22222211  1123567999


Q ss_pred             EEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         156 AKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       156 ~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      +.|.|.+.|. |.+ .+.|++++ ..+........ ... .....+.|.|..+..+| |.|+|.|.|..+ .....+.+.
T Consensus       139 v~L~C~~~g~~P~p~~v~W~~~g-~~~~~~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~-~~~~~~~~~  214 (227)
T 1mju_H          139 VTLGCLVKGYFPEPVTLTWNSGS-LSSGVHTFPAVLQSD-LYTLSSSVTVTSSTWPS-QSITCNVAHPAS-STKVDKKIE  214 (227)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEEETT-EEEEEEEEEECTTTTTT-SCCEEEEEEGGG-TEEEEEECC
T ss_pred             EEEEEEeecEeCCCeEEEEecCC-CcCCcEECCceecCC-eEEEEEEEEEchhhcCC-CeEEEEEEECCC-CcceEEEeC
Confidence            9999999884 777 99999954 33211110000 001 11233468888777777 999999999776 324455555


Q ss_pred             EEeec
Q psy7941         233 VHCTY  237 (238)
Q Consensus       233 V~~~p  237 (238)
                      +..+|
T Consensus       215 ~~~~p  219 (227)
T 1mju_H          215 PRGPT  219 (227)
T ss_dssp             CCCC-
T ss_pred             CCCCC
Confidence            55555

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=8.7e-20  Score=134.73  Aligned_cols=189  Identities=17%  Similarity=0.271  Sum_probs=116.7

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee-eeee--eeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV-LAIH--EHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~-~~~~--~~~   83 (238)
                      ..+...+..+.+.+|+++.|.|.+......                     ....+.+.|+|+.. . .. ....  ...
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~   60 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVH---------------------NNGNTYLEWYLQKPGQSPQLLIYKVSNRF   60 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCEEEEEETTTEEC
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccc---------------------cCCCceEEEEEECCCCCceEEEEEecccC
Confidence            356677888999999999999999642200                     00035699999542 1 11 1000  000


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC------------cccccccCCcee
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP------------DISSEETSGDMM  149 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~------------~~~~~~~~~~~~  149 (238)
                      .....|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..++            .+... .+....
T Consensus        61 ~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~  138 (247)
T 1svz_A           61 SGVPDRFSGSG-SGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQ-QSGPEL  138 (247)
T ss_dssp             TTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE-ECCCEE
T ss_pred             CCCCCcEEecc-CCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEe-CCCcee
Confidence            01245777654 34567999999999999999999976532  1234567776543            11221 123345


Q ss_pred             ecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--EeecCC---------CCCcceEEEe-----eceEEEEEeecCCC
Q psy7941         150 VPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVRSNP---------PSSQKVFSVE-----SEVLSLTKVTRSEM  210 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~~~~---------~~~~~~~~~~-----~~~l~i~~~~~~d~  210 (238)
                      +.+|+.+.|.|.+.+.+  .+.+.|++++ +...  ......         ....+.....     ...|.|.+++.+|+
T Consensus       139 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  218 (247)
T 1svz_A          139 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDT  218 (247)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHC
Confidence            88999999999998864  5699999853 2111  110000         0011211111     24799999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|+|.+.|.
T Consensus       219 G~Y~C~a~n~  228 (247)
T 1svz_A          219 ATYFCVRDRH  228 (247)
T ss_dssp             EEEEEEEEEG
T ss_pred             EEEEEEEecc
Confidence            9999999985

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.86  E-value=1.8e-20  Score=138.29  Aligned_cols=184  Identities=17%  Similarity=0.259  Sum_probs=116.7

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee---ee
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH---EH   82 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~---~~   82 (238)
                      .+...+..+.+.+|+++.|.|.+...                          +.+.+.|+|....    ......   ..
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~   56 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDF--------------------------QATTMFWYRQFPKQSLMLMATSNEGSKA   56 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSS--------------------------CCCSEEEEEECTTSCCEEEEEECTTSCC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCC--------------------------CceEEEEEEECCCCCcEEEEEEccCCCc
Confidence            46677888999999999999998642                          3567999994211    111111   00


Q ss_pred             Eee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEc------CCcccccccCCce
Q psy7941          83 VIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVI------PPDISSEETSGDM  148 (238)
Q Consensus        83 ~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~------~~~~~~~~~~~~~  148 (238)
                      ...   ..+|+.+.......++|.|.+++.+|+|.|+|.+.+...     ....+.+.|..      +|.+... .+...
T Consensus        57 ~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~-~~~~~  135 (246)
T 4dzb_B           57 TYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSEA  135 (246)
T ss_dssp             EECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHH
T ss_pred             eecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEee-cCCch
Confidence            011   126777766445678999999999999999999975321     12344577764      2332211 12223


Q ss_pred             eecCCCcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEE
Q psy7941         149 MVPEGGSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCI  216 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~  216 (238)
                      .+..|+.+.|.|.+.|.|++  .+.|++ ++..+........         .... ......|.|.....+| .|.|+|.
T Consensus       136 ~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~d~~g~YtC~  213 (246)
T 4dzb_B          136 EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRCQ  213 (246)
T ss_dssp             HHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTSTTCC-EEEEEEEEEEHHHHTCTTCEEEEE
T ss_pred             hccCCCcEEEEEEEccCcCCceEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEECHHHhccCCCeEEEE
Confidence            35568999999999986554  899999 5555432111000         0111 1112357788787788 9999999


Q ss_pred             eeeCCC
Q psy7941         217 AANGVP  222 (238)
Q Consensus       217 ~~n~~g  222 (238)
                      |.|...
T Consensus       214 v~~~~~  219 (246)
T 4dzb_B          214 VQFYGL  219 (246)
T ss_dssp             EEECCB
T ss_pred             EEecCC
Confidence            999875

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.86  E-value=1.3e-21  Score=138.43  Aligned_cols=144  Identities=19%  Similarity=0.294  Sum_probs=96.5

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (238)
                      .+..|+++.|.|.+..                            ++.+.|+|++..+...        ..          
T Consensus        10 v~~~G~~v~L~C~~~~----------------------------~~~i~W~k~g~~l~~~--------~~----------   43 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS----------------------------DENLKWEKNGQELPQK--------HD----------   43 (186)
T ss_dssp             EEEETTEEEEECSSCC----------------------------CTTCEEEETTEEECSC--------CC----------
T ss_pred             EEeCCcEEEEEEeCCC----------------------------CCceEEEECCEECCCC--------CC----------
Confidence            4578999999999852                            1239999987654211        11          


Q ss_pred             eEEEEEcc-cCcccCeEEEEEEecCCCc-ceeeEEEEEc--CCccc------------------ccccCCc---eeecCC
Q psy7941          99 TWTLNIRS-VRREDRGYYMCQVNTNPMT-KQMAFLEVVI--PPDIS------------------SEETSGD---MMVPEG  153 (238)
Q Consensus        99 ~~~L~i~~-~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~--~~~~~------------------~~~~~~~---~~~~~g  153 (238)
                       .+|.|.+ ++.+|+|.|+|.+.+.... .....+.|..  ++...                  .......   ..+.+|
T Consensus        44 -~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  122 (186)
T 1jbj_A           44 -KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD  122 (186)
T ss_dssp             -SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSS
T ss_pred             -CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCC
Confidence             1899999 9999999999999775332 2222222221  11100                  0000001   123489


Q ss_pred             CcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         154 GSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       154 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.+.|.|.+   |.|.+.|++ ++..+....          .....|.|.++..+|+|.|+|.|.|..|.
T Consensus       123 ~~v~l~C~~---p~p~i~W~k-~g~~i~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          123 GSVLLTCGL---TDKTIKWLK-DGSIISPLN----------ATKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CEEEEECSS---SCSCEEEEE-TTEECCCSS----------CCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             CeEEEEeeC---CCCeEEEEE-CCEECcccC----------CCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            999999988   889999999 555543111          14557999999999999999999999883

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.86  E-value=6.4e-21  Score=149.65  Aligned_cols=195  Identities=17%  Similarity=0.293  Sum_probs=130.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.+...+....+.+|+++.|.|.+....+.                       +.+.+.|++++..+....    ....
T Consensus       103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-----------------------~~~~v~W~~~~~~~~~~~----~~~~  155 (388)
T 2v5m_A          103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVAD-----------------------FVEVVSWHTDEEENYFPG----AEYD  155 (388)
T ss_dssp             CCCCCCBCCCEEEETTSCEEECCBCCTTTTT-----------------------TEEEEEEEETTCCEECSS----SCBT
T ss_pred             ccccccCccceeeecCCcEEEEEECcCCCCC-----------------------CcceEEEEeCCCcccccc----cCCC
Confidence            5666666777889999999999998643221                       236799999876543211    0112


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccC-eEEEEEEecCCCcce-----eeEEEEEcCCc-----ccccccCCceeecCCCcE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDR-GYYMCQVNTNPMTKQ-----MAFLEVVIPPD-----ISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~~-----~~~l~v~~~~~-----~~~~~~~~~~~~~~g~~~  156 (238)
                      .++.....    .+|.|.+++.+|+ |.|+|.+.+......     ...+.|..+..     .... ......+.+|+.+
T Consensus       156 ~~~~~~~~----~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~v~~G~~v  230 (388)
T 2v5m_A          156 GKYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL-VQKPLELMVAHTI  230 (388)
T ss_dssp             TTEEECTT----SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSS-CCCCEEEETTSCE
T ss_pred             CcEEEccC----CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccc-cCCceEEeeCCcE
Confidence            34433322    2799999999999 999999977532111     12466665422     1111 1223457889999


Q ss_pred             EEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         157 KLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       157 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      .|.|.+.|.|.|.+.|++++.......... .... .....+.|.|.++..+|.|.|+|.|.|..|. .+..+.|.|..+
T Consensus       231 ~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~  307 (388)
T 2v5m_A          231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVV-LNDR-VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAP  307 (388)
T ss_dssp             EECCCCEEESCCEEEEEEECTTSSCEEECC-CSSS-EEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEecCCCCccccccc-ccCc-eecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCC
Confidence            999999999999999999533211111100 1111 2234568999999999999999999999994 478888888877


Q ss_pred             c
Q psy7941         237 Y  237 (238)
Q Consensus       237 p  237 (238)
                      |
T Consensus       308 p  308 (388)
T 2v5m_A          308 L  308 (388)
T ss_dssp             E
T ss_pred             C
Confidence            6

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.86  E-value=1.5e-20  Score=156.75  Aligned_cols=173  Identities=19%  Similarity=0.311  Sum_probs=121.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...+....+.+|+++.|.|.+.                          +.|.+.++|++++..+.         .    
T Consensus       206 ~~~~~~~~~~~~G~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~i~---------~----  246 (642)
T 1e07_A          206 PTISPLNTSYRSGENLNLSCHAA--------------------------SNPPAQYSWFVNGTFQQ---------S----  246 (642)
T ss_pred             cEEecCCcccccCCEEEEEEEcC--------------------------CCCCcEEEEEECCeEcc---------c----
Confidence            34455666788999999999983                          34577899999765431         0    


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPT  167 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  167 (238)
                              ...|.|.+++.+|+|.|+|.+.+.... .  ....+.|..++............+..|+.+.|.|.+.+.| 
T Consensus       247 --------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-  317 (642)
T 1e07_A          247 --------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-  317 (642)
T ss_pred             --------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-
Confidence                    117999999999999999999875332 2  2334555543322211223334566688899999998876 


Q ss_pred             CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +.+.|++ ++..+...     ........+..|.|.++..+|.|.|+|.|.|..|...+..+.|.|..+|
T Consensus       318 ~~v~W~~-~g~~l~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p  381 (642)
T 1e07_A          318 TTYLWWV-NNQSLPVS-----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP  381 (642)
T ss_pred             ccEEEEE-CCccCCCc-----CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC
Confidence            7999999 44443211     1112223356899999999999999999999998766777888888765

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.86  E-value=2e-20  Score=134.99  Aligned_cols=184  Identities=18%  Similarity=0.251  Sum_probs=112.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeeeeee---eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVLAIH---EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~---~~~~~   85 (238)
                      +.. +..+.+.+|+++.|.|.+.......                       .+.+.|++++.  .......   .....
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~-----------------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~   59 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTT-----------------------SNYANWVQEKPDHLFTGLIGGTNNRAPG   59 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCG-----------------------GGCCEEEEEETTTEEEEEEETTTEECTT
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCC-----------------------CCeEEEEEeCCCCCceEEEEcCcccCCc
Confidence            455 7888999999999999986422100                       24699999632  2110000   00001


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCcEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ...|+.... ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|.    .+|.+....  .......|+.+.|.
T Consensus        60 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~  136 (212)
T 1q0x_L           60 VPARFSGSL-IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFP--PSSEELSTAKATLV  136 (212)
T ss_dssp             CCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEEC--CCHHHHTTTEEEEE
T ss_pred             ccccEEEEe-eCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeC--CCHHHccCCcEEEE
Confidence            235666554 345669999999999999999999875432  223456664    233333211  11223468899999


Q ss_pred             EEEccc-cCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         160 CKAKGY-PTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       160 C~~~~~-p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.+.|. |.+ .+.|++ ++..+.....   ............+.|.|.....+|.|.|+|.|.|...
T Consensus       137 C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          137 CTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             EEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             EEEEEEeCCCeEEEEEE-CCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            999885 444 899999 5554422100   0000000112233688888889999999999999765

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.86  E-value=6.1e-20  Score=133.30  Aligned_cols=181  Identities=20%  Similarity=0.309  Sum_probs=114.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee----eEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE----HVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~----~~~--   84 (238)
                      +..+.+.+|+++.|.|.+.....                        ..+.+.|||... . .  +.....    ...  
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~   62 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDF------------------------SKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTP   62 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSSCEEECT
T ss_pred             CCCeEecCCCcEEEEEEecCccC------------------------CCceEEEEEECCCCCeEEEEEEccCCCceecCC
Confidence            45688999999999999964211                        134699999642 1 1  111100    001  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcC----CcccccccCCceeecCCCc
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIP----PDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~g~~  155 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...    ....+.|.|...    |.+....   ...+..|+.
T Consensus        63 ~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---~~~~~~g~~  139 (220)
T 2fbj_H           63 SLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT---LPPALSSDP  139 (220)
T ss_dssp             TTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC---CCSSSCCSS
T ss_pred             ccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee---cccccCCCc
Confidence            124688877642 4567999999999999999999976532    123456777642    2222211   123567999


Q ss_pred             EEEEEEEccc-cC--CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         156 AKLVCKAKGY-PT--PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       156 ~~l~C~~~~~-p~--~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +.|.|.+.+. |.  +.+.|++++ ..+.......  ..... ....+.|.|.....+|.|.|+|.|.|..|..
T Consensus       140 v~L~C~~~g~~P~~~~~v~W~~~~-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          140 VIIGCLIHDYFPSGTMNVTWGKSG-KDITTVNFPPALASGGR-YTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             EEEEEEEEEEBSCCCEEEEESCCC-SSCEEEECCCEECSSSC-EEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEEEEEeEECCCcEEEEEecCC-EecceEecCceECCCCC-EEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            9999999885 76  699999954 3332111100  00111 1122357887777889999999999998844

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.86  E-value=7.7e-21  Score=137.00  Aligned_cols=179  Identities=20%  Similarity=0.301  Sum_probs=111.7

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee---eeEe--e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH---EHVI--T   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~---~~~~--~   85 (238)
                      +..+.+.+|+++.|.|.+.....                        +.+.+.|+|++  ....  ....   ....  .
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~   62 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSI------------------------TSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPS   62 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCG------------------------GGSCEEEEEEETTTEEEEEEEECTTSCEEECGG
T ss_pred             CCCEEecCCCcEEEEEEEecccC------------------------CCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcc
Confidence            56678999999999999974210                        13569999863  1111  1000   0000  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc----CCcccccccCCceeecCCCcEEEEE
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      ..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.......+.|.|..    +|.+...  .....+..|+.+.|.|
T Consensus        63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~--~~~~~~~~g~~v~L~C  140 (210)
T 3d9a_H           63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPL--APGSAAQTNSMVTLGC  140 (210)
T ss_dssp             GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEE--CCTTSCCCSSEEEEEE
T ss_pred             cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEe--cCCcccccCCcEEEEE
Confidence            24677776532 356799999999999999999997653222345677663    2322221  1112356799999999


Q ss_pred             EEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         161 KAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       161 ~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+.|. |.| .+.|++++. .+........ ... .....+.|.|..+..+| |.|+|.|.|..|
T Consensus       141 ~~~g~~P~p~~v~W~~~~~-~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  202 (210)
T 3d9a_H          141 LVKGYFPEPVTVTWNSGSL-SSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  202 (210)
T ss_dssp             EEEEEBSSCCEEEEGGGTB-CTTEEECCCEEETT-EEEEEEEEEEEGGGTTT-SCCEEEEEEGGG
T ss_pred             EEeeEecCCcEEEEeeCCc-ccceEEcCCccCCC-cEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence            99885 888 999999543 2211110000 001 11223468888887766 999999999988

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.86  E-value=1.4e-20  Score=136.69  Aligned_cols=181  Identities=19%  Similarity=0.303  Sum_probs=112.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee--------e
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH--------E   81 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~--------~   81 (238)
                      .+..+.+.+|+++.|.|.+.....                        +.+.+.|+|++. . .  .....        .
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~   61 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTF------------------------SNYWMEWVRQSPEKGLEWVAEIRLKSNNYATH   61 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCG------------------------GGSEEEEEEEETTTEEEEEEEECCGGGTTCEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCcc------------------------CCccEEEEEeCCCCCcEEEEEEEcCCCccccc
Confidence            356678999999999999974221                        135699999642 1 1  11110        0


Q ss_pred             eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCCc----ceeeEEEEEc----CCcccccccCCceeecC
Q psy7941          82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVI----PPDISSEETSGDMMVPE  152 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~----~~~~~~~~~~~~~~~~~  152 (238)
                      ......+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+....    ...+.|.|..    +|.+...  .....+.+
T Consensus        62 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~  139 (220)
T 1pz5_B           62 YAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPL--VPGCSDTS  139 (220)
T ss_dssp             ECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEE--CCCSCCSC
T ss_pred             cCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEc--ccccccCC
Confidence            000114677776532 35679999999999999999999875321    1345677763    2322221  11223567


Q ss_pred             CCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |+.+.|.|.+.|. |.| .+.|++++................ ....+.|.|.....++ |.|+|.|.|..|
T Consensus       140 g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  209 (220)
T 1pz5_B          140 GSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGF-YSLSSLVTVPSSTWPS-QTVICNVAHPAS  209 (220)
T ss_dssp             SSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTE-EEEEEEEEECGGGTTT-SCCEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCe-EEEEEEEEEcchhcCC-ceEEEEEEECCc
Confidence            9999999999885 888 999999554210000000000011 1224468888777766 999999999998

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.86  E-value=3.9e-20  Score=141.49  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=108.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...+... +.+|+++.|.|.+..                           +.+.+.|++++............   
T Consensus       119 ~p~~~~~~~~~-v~~G~~v~L~C~~~~---------------------------~~~~~~w~k~g~~~~~~~~~~~~---  167 (316)
T 3vh8_G          119 KPSLLAHPGPL-VKSGERVILQCWSDI---------------------------MFEHFFLHKEGISKDPSRLVGQI---  167 (316)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEESS---------------------------CCSEEEEEETTCCSCCEEEECEE---
T ss_pred             CCeEEecCCCc-cCCCCeEEEEEcCCC---------------------------CCcEEEEEECCCccccceeeeee---
Confidence            34555444444 789999999999842                           23468999987654321111000   


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc------ceeeEEEEEcC---CcccccccCCceeecCCCcEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT------KQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                            ........|.|.+++.+|+|.|+|.+.+....      +....+.|...   |.+...  + ...+.+|+.+.|
T Consensus       168 ------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~--~-~~~v~~G~~v~L  238 (316)
T 3vh8_G          168 ------HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQ--P-GPKVQAGESVTL  238 (316)
T ss_dssp             ------ETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEE--S-CSCCCTTSCCEE
T ss_pred             ------cCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeC--C-CCeecCCCcEEE
Confidence                  01112238999999999999999999875332      44456666642   222221  1 225688999999


Q ss_pred             EEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEEEE
Q psy7941         159 VCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLHVH  234 (238)
Q Consensus       159 ~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~V~  234 (238)
                      .|.+.. |.+.+.|++++.............   .......|.|.++.  |+|.|+|.+.|..+.    ..+..+.|.|.
T Consensus       239 ~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~---~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  312 (316)
T 3vh8_G          239 SCSSRS-SYDMYHLSREGGAHERRLPAVRKV---NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVT  312 (316)
T ss_dssp             EEEESS-CCSEEEEEETTSSCCEEEECEECT---TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC---
T ss_pred             EEECCC-CCcEEEEEECCCcCCCceeceecc---CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEe
Confidence            999974 778999999544322111100000   01122468888888  999999999997653    56889999998


Q ss_pred             eec
Q psy7941         235 CTY  237 (238)
Q Consensus       235 ~~p  237 (238)
                      .+|
T Consensus       313 g~p  315 (316)
T 3vh8_G          313 GNP  315 (316)
T ss_dssp             ---
T ss_pred             CCC
Confidence            877

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.86  E-value=5.7e-21  Score=155.74  Aligned_cols=199  Identities=17%  Similarity=0.249  Sum_probs=126.5

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeee--------------eeecCCeEEeccC---CCCceEEEEeCCceeeeeeeee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT--------------HVNTGGSIVFPTD---SSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      +...|.+.|+|.+.+  +.  +..+.+.              .+..|+.+.+.|.   .+.+.+.|++.++....     
T Consensus        87 ~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~-----  157 (524)
T 2ec8_A           87 AEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP-----  157 (524)
T ss_dssp             CCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCC-----
T ss_pred             cchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcC-----
Confidence            445677777777766  32  2222222              1344566666554   23478999995443321     


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCCc--ceeeEEEEE----cCCcccccccCCceeecCCCc
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPMT--KQMAFLEVV----IPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~  155 (238)
                         .+.++......    .|.|.+++.+|+| .|+|.+.+....  +..+.|.|.    .+|.+..  .+....+.+|+.
T Consensus       158 ---~~~~~~~~~~~----~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~--~~~~~~v~~G~~  228 (524)
T 2ec8_A          158 ---KDLRFIPDPKA----GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV--SKASYLLREGEE  228 (524)
T ss_dssp             ---SSCEEEEETTT----EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEEC--SCSEEEEETTSC
T ss_pred             ---CCCceeECCCc----cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEe--cCCcceEEcCCc
Confidence               23334333222    8999999999999 999999765332  335667776    4444433  234457889999


Q ss_pred             EEEEEEEccccCCe-EEEEeCCCee-eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         156 AKLVCKAKGYPTPK-ITWRREDNKE-IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       156 ~~l~C~~~~~p~~~-~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      +.|.|.+.+.|.+. +.|++++... +.................+.|.|.++..+|.|.|+|.|.|..|.. ...+.|.|
T Consensus       229 v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  307 (524)
T 2ec8_A          229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEV  307 (524)
T ss_dssp             EEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEE
Confidence            99999999988886 9999955441 111110000000012345589999999999999999999999954 66888888


Q ss_pred             Eeec
Q psy7941         234 HCTY  237 (238)
Q Consensus       234 ~~~p  237 (238)
                      ..+|
T Consensus       308 ~~~p  311 (524)
T 2ec8_A          308 VDKG  311 (524)
T ss_dssp             ESSC
T ss_pred             eccC
Confidence            7665

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.86  E-value=2e-20  Score=136.75  Aligned_cols=198  Identities=14%  Similarity=0.232  Sum_probs=120.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeee---
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEH---   82 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~---   82 (238)
                      .+...+..+.+.+|+++.|.|.+....                        .+.+.+.|||+..  ..  +......   
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~   58 (230)
T 1ypz_F            3 KLEQPEISISRPRDETAQISCKVFIES------------------------FRSVTIHWYRQKPNQGLEFLLYVLATPTH   58 (230)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGG------------------------GGGCCEEEEEECTTTCCEEEEEECSSCCC
T ss_pred             cccccCCEEEEeCCCcEEEEEEeeccc------------------------cCccEEEEEEECCCCCCEEEEEEecCCee
Confidence            356678889999999999999996421                        0134699998642  11  1111100   


Q ss_pred             -Eee-cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC--CC---cceeeEEEEEc---------CCcccccccC
Q psy7941          83 -VIT-NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN--PM---TKQMAFLEVVI---------PPDISSEETS  145 (238)
Q Consensus        83 -~~~-~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~--~~---~~~~~~l~v~~---------~~~~~~~~~~  145 (238)
                       ... ..+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+.  ..   ....+.|.|..         +|.+.... +
T Consensus        59 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p  137 (230)
T 1ypz_F           59 IFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-P  137 (230)
T ss_dssp             EEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-C
T ss_pred             ecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-C
Confidence             011 35788877533 36789999999999999999999763  11   12345677762         23322221 2


Q ss_pred             CceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ....+..|+.+.|.|.+.|. |. +.+.|++.++..+.......  ..... ....+.|.|..... + |.|+|.+.|..
T Consensus       138 ~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~-~~~~s~L~i~~~~~-~-~~ytC~v~~~~  214 (230)
T 1ypz_F          138 SVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDT-YMKFSWLTVPERAM-G-KEHRCIVKHEN  214 (230)
T ss_dssp             CHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTE-EEEEEEEEECGGGT-T-SCEEEEEECSS
T ss_pred             CchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCC-EEEEEEEEEEhhhC-C-CEEEEEEEECC
Confidence            22234568889999999884 75 59999994444332110000  00011 11223567665554 4 89999999987


Q ss_pred             CCCccceEEEEEEeecC
Q psy7941         222 PPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p~  238 (238)
                      +.   ..+.+.+.+||+
T Consensus       215 ~~---~~~~~~~~fp~~  228 (230)
T 1ypz_F          215 NK---GGADQAIFFPSI  228 (230)
T ss_dssp             CT---TTSCEEEEECCC
T ss_pred             CC---CceeEeeecCCC
Confidence            62   234456777875

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=1.8e-19  Score=134.41  Aligned_cols=192  Identities=21%  Similarity=0.323  Sum_probs=120.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee-e
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH-E   81 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~-~   81 (238)
                      ..+.+...+..+.+.+|+++.|.|.+......                    .....+.+.|+|+.  ....  .... .
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~--------------------~~~~~~~v~W~k~~~g~~~~~l~~~~~~   63 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLY--------------------SNNQKNYLAWYQQKPGQSPKLLISWAFT   63 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEE--------------------TTTTEECEEEEEECTTSCCEEEEETTTE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccc--------------------cccCCceEEEEEECCCCCcEEEEEeccc
Confidence            45677888999999999999999998643200                    00003469999963  1111  1100 0


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC------------------cccc
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP------------------DISS  141 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~------------------~~~~  141 (238)
                      .......|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|..++                  .+..
T Consensus        64 ~~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (264)
T 2gjj_A           64 RKSGVPDRFTGSG-SGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQL  142 (264)
T ss_dssp             ECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEE
T ss_pred             CCCCCCccEEEec-CCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEE
Confidence            0001246777654 34567999999999999999999976532  1234567887653                  1222


Q ss_pred             cccCCceeecCCCcEEEEEEEccccC--CeEEEEeCC-Ce--eeEee-cCC--------CCCcceEEE-----eeceEEE
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYPT--PKITWRRED-NK--EIIVR-SNP--------PSSQKVFSV-----ESEVLSL  202 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~-~~--~~~~~-~~~--------~~~~~~~~~-----~~~~l~i  202 (238)
                      .. +....+.+|+.+.|.|.+.+.+.  +.+.|+++. +.  ..... ...        .........     ....|.|
T Consensus       143 ~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  221 (264)
T 2gjj_A          143 QQ-SGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQL  221 (264)
T ss_dssp             EE-CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eC-CCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEE
Confidence            11 22346889999999999988653  799999853 21  11110 000        001111111     1347999


Q ss_pred             EEeecCCCeEEEEEeeeC
Q psy7941         203 TKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~n~  220 (238)
                      .++..+|+|.|+|.+.|.
T Consensus       222 ~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          222 NSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             CcCCcccCEEEEEEEecC
Confidence            999999999999999995

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.85  E-value=1.5e-19  Score=131.27  Aligned_cols=180  Identities=19%  Similarity=0.389  Sum_probs=112.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee----eee--------
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA----IHE--------   81 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~----~~~--------   81 (238)
                      .+..+.+.+|+++.|.|.+....                        .+.+.+.||+........    ...        
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~   61 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFT------------------------LSGSNVHWVRQASGKGLEWVGRIKRNAESDATA   61 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSC------------------------GGGSEEEEEEECTTSCEEEEEEECCGGGTTCEE
T ss_pred             ccCCEEEcCCCCEEEEEEccccc------------------------ccccEEEEEEECCCCCcEEEEEEcccccCcccc
Confidence            34567899999999999997421                        113569999853211110    000        


Q ss_pred             eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---CcceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941          82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---MTKQMAFLEVVI----PPDISSEETSGDMMVPEG  153 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g  153 (238)
                      ......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+..   .....+.+.|..    +|.+.... +.. . ..|
T Consensus        62 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~-~-~~g  138 (221)
T 3m8o_H           62 YAASMRGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLS-LCS-T-QPD  138 (221)
T ss_dssp             ECGGGTTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEE-CCS-C-CCT
T ss_pred             cCccccccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEec-Ccc-c-ccC
Confidence            001124678776543 467799999999999999999997653   123345666652    22222111 111 1 678


Q ss_pred             CcEEEEEEEcc-ccC-C-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         154 GSAKLVCKAKG-YPT-P-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~-~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.+.|.|.+.+ +|. + .+.|++ ++..+.......   ...... ...+.|.|.....+|.|.|+|.|.|..+
T Consensus       139 ~~v~L~C~~~~~~P~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          139 GNVVIACLVQGFFPQEPLSVTWSE-SGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHVKHYTN  211 (221)
T ss_dssp             TEEEEEEEEEEEBSSCSEEEEESC-CSTTCEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred             CCEEEEEEEEeeECCCCEEEEEEE-CCEECceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence            99999999988 776 4 899998 444332211110   011111 1223688888888899999999999876

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.85  E-value=1e-20  Score=145.54  Aligned_cols=183  Identities=20%  Similarity=0.209  Sum_probs=119.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ....+.+.+|+++.|.|.+.......                 ..-..|.+.+.|+|++.....         ..+. ..
T Consensus        35 ~~~~v~v~eG~~v~L~C~~~~~~~~~-----------------~~~~~p~~~v~W~k~~~~~~~---------~~~~-~~   87 (329)
T 3oq3_B           35 GTMNDMAALGEPFSAKCPPIEDSLLS-----------------HRYNDKDNVVNWEKIGKTRRP---------LNRR-VK   87 (329)
T ss_dssp             EEEEEEECTTSCEEECCHHHHCTTTG-----------------GGSCCTTCEEEEEECSSSCEE---------CSTT-EE
T ss_pred             CcceEEEECCCeEEEEccCCCCcccc-----------------ccccCCCCeeEEEECCCCccc---------cCce-ee
Confidence            34677899999999999986532100                 000134678999998765432         1111 11


Q ss_pred             EcCCCeEEEEEcccCcccCe-EEEEEEecCCCcc-eeeEEEEE-cCCcccccccCCceeecCCCcEEEEEEEcccc-CCe
Q psy7941          94 HNDANTWTLNIRSVRREDRG-YYMCQVNTNPMTK-QMAFLEVV-IPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPK  169 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~-~~~~l~v~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~  169 (238)
                           ..+|.|.+++.+|+| .|+|.+.+..... ....+.+. .+|.+..  ......+.+|+.+.|.|.+.|.| .+.
T Consensus        88 -----~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~--~~~~~~~~~G~~v~L~C~~~g~p~~~~  160 (329)
T 3oq3_B           88 -----NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP--ETYELGTHDKYGIDLYCGILYAKHYNN  160 (329)
T ss_dssp             -----TTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEE--EEEETTSSTTTCEEEECCCCSCCCCCE
T ss_pred             -----cceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEec--cccceEEeCCCcEEEEeccCCCCCCce
Confidence                 128999999999999 9999998764322 22222333 3443222  12223466799999999999999 899


Q ss_pred             EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC--CCCC---ccceEEEEEEeec
Q psy7941         170 ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG--VPPT---VSKRLMLHVHCTY  237 (238)
Q Consensus       170 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~--~g~~---~~~~~~l~V~~~p  237 (238)
                      +.|++ ++..+...     ... ....+..|.|.++..+|+|.|+|.|.|.  .|..   .++.+.|.|..+|
T Consensus       161 i~W~k-~~~~l~~~-----~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          161 ITWYK-NNQELIID-----GTK-YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEEE-TTEECCCS-----SSS-EEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EEEEE-CCccCCCC-----Cce-EecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            99999 55444211     111 2223578999999999999999999997  6522   1233778887654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.85  E-value=4.5e-20  Score=137.01  Aligned_cols=181  Identities=19%  Similarity=0.289  Sum_probs=111.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeee-eeeEeecCc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAI-HEHVITNNA   88 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~-~~~~~~~~~   88 (238)
                      .+..+.+.+|+++.|.|.+....                        .+.+.+.|+|+...  .  .... ........+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~   63 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSN------------------------IGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPD   63 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTT------------------------TTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCT
T ss_pred             cCCcEEEcCCCcEEEEEecCCCC------------------------CCCceEEEEEECCCCCCEEEEEecCCCCCCcCC
Confidence            34568899999999999986421                        13557999995321  1  1100 000011245


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcCCc-------------------ccccccC
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIPPD-------------------ISSEETS  145 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~~~-------------------~~~~~~~  145 (238)
                      |+..... ...++|.|.+++.+|+|.|+|.+.+...    ....+.|.|..++.                   +.. ..+
T Consensus        64 r~~~~~~-~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  141 (256)
T 3ux9_B           64 RFSGSKS-GTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL-VES  141 (256)
T ss_dssp             TEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEE-EEE
T ss_pred             cEEEEcc-CCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE-EcC
Confidence            7776543 3567999999999999999999976421    22345677765442                   111 122


Q ss_pred             CceeecCCCcEEEEEEEcccc--CCeEEEEeCC-CeeeEee--cCC---------CCCcceEEEe-----eceEEEEEee
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEIIVR--SNP---------PSSQKVFSVE-----SEVLSLTKVT  206 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~~~~--~~~---------~~~~~~~~~~-----~~~l~i~~~~  206 (238)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|++++ +......  ...         ....+.....     ...|.|.+++
T Consensus       142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            335588999999999998865  6799999853 2211100  000         0011111111     2259999999


Q ss_pred             cCCCeEEEEEeeeC
Q psy7941         207 RSEMGAYQCIAANG  220 (238)
Q Consensus       207 ~~d~G~y~C~~~n~  220 (238)
                      .+|+|.|+|.+.|.
T Consensus       222 ~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          222 AEDTAVYYCARYID  235 (256)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhhCEEEEEEEEcC
Confidence            99999999999996

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.85  E-value=4.9e-20  Score=131.80  Aligned_cols=181  Identities=18%  Similarity=0.287  Sum_probs=108.8

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee---cCccEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT---NNARLSV   92 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~   92 (238)
                      ..+.+.+|+++.|.|.+....                      .+.|.+.+.|++++..+..........   ...|..+
T Consensus         2 ~~v~v~~G~~v~L~C~~~~~~----------------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~   59 (201)
T 1dr9_A            2 IHVTKEVKEVATLSCGHNVSV----------------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF   59 (201)
T ss_dssp             CEEEEETTSCEEECCSCCCCT----------------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE
T ss_pred             ceEEEEeCCCEEEecccCCCc----------------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE
Confidence            357789999999999985321                      012356799999876543221111000   1223333


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-----ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-cc
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-----KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-GY  165 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~  165 (238)
                      .  ..+..+|.|.+++.+|+|.|+|.+.+... .     .....|.|..++..+.   ........|+.+.|.|.+. |+
T Consensus        60 ~--~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~---~~~~~~~~g~~~~l~C~~~~g~  134 (201)
T 1dr9_A           60 D--ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS---ISDFEIPTSNIRRIICSTSGGF  134 (201)
T ss_dssp             E--STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCE---EEEEECSSTTEEEEEEEEEEES
T ss_pred             c--cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCc---eEeccCCCCCeEEEEEecCCcc
Confidence            1  12345899999999999999999987432 2     1344455554422111   0111234588899999995 89


Q ss_pred             cCCeEEEEeCCCeeeEeecCCCCCcceEEEee-ce---EEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         166 PTPKITWRREDNKEIIVRSNPPSSQKVFSVES-EV---LSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       166 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~---l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      |.|.+.|++ ++..+....     ........ +.   ..+..+..+|.|.|+|.|.|..|.. ++.+.
T Consensus       135 P~p~i~W~k-~g~~l~~~~-----~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~  196 (201)
T 1dr9_A          135 PEPHLSWLE-NGEELNAIN-----TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFN  196 (201)
T ss_dssp             SCEEEEEEE-SSCEECCSE-----EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEE
T ss_pred             CCCEEEEEE-CCEECcccc-----ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEEe
Confidence            999999999 454443211     01111111 11   1234566789999999999999833 55544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.85  E-value=5.5e-21  Score=148.93  Aligned_cols=172  Identities=18%  Similarity=0.330  Sum_probs=119.0

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-----ecCccE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-----TNNARL   90 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~~~~   90 (238)
                      +.+.+.+|+++.|.|.+.                          +.|.+.+.|+|++...........+     ....|+
T Consensus         2 e~v~~~~G~~v~L~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~   55 (363)
T 1wio_A            2 KVVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRA   55 (363)
T ss_dssp             EEEEEETTSCEEECCCCT--------------------------TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGE
T ss_pred             CeEEEeCCCeEEEEEEec--------------------------CCCceEEEEEeCCccceeccCccEEecCCcccccce
Confidence            356789999999999974                          2346779999987653332211111     112344


Q ss_pred             EEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          91 SVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        91 ~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      .+...  .....+|.|.+++.+|+|.|+|.+.+..   ..+.|.|..   +..   .....+.+|+.+.|.|.+.+.|.|
T Consensus        56 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~---~~~~l~V~~---~~~---~~~~~v~~G~~v~l~C~~~~~p~~  126 (363)
T 1wio_A           56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQK---EEVQLLVFG---LTA---NSDTHLLQGQSLTLTLESPPGSSP  126 (363)
T ss_dssp             ECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEE---EEEEEEEEE---EEE---SSCSSEESBSCEEEEEECCTTCCC
T ss_pred             eeeeccccCCeEEEEECCCCHHHCEEEEEEEEECC---CcEEEEEEe---CCC---CCceEEecCCCEEEEEEcCCCCCC
Confidence            43321  1234489999999999999999996642   345566653   111   112356789999999999899999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.|+++++..              ......|.|.++..+|+|.|+|.|.|..+ .....+.|.|..+|
T Consensus       127 ~v~W~~~~~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~-~~~~~~~l~v~~~p  180 (363)
T 1wio_A          127 SVQCRSPRGKN--------------IQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ  180 (363)
T ss_dssp             CEEEECSSSCE--------------EEESSEEEECSBCGGGCEECEEEEEETTE-EEEECCEECEECCS
T ss_pred             eEEEEcCCCcc--------------cccceEEEEeeCChhcCCEEEEEEecCCC-eEEEEEEEEEecCC
Confidence            99999954332              22455799999999999999999999765 33566667776544

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=147.55  Aligned_cols=176  Identities=17%  Similarity=0.220  Sum_probs=126.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+..                              .+.|+++....           
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~-----------   41 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNG------------------------------SVEWDGPPSPH-----------   41 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSS------------------------------CCCBCCCCCSS-----------
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCC------------------------------ceEEccCCCCc-----------
Confidence            5788888899999999999999999853                              28999754321           


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY  165 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  165 (238)
                         .... ......+|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++.+... .+....+.+|+.+.|.|.+.+ 
T Consensus        42 ---~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~-~~~~~~v~~g~~v~l~C~~~~-  115 (292)
T 4dkd_C           42 ---WTLY-SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV-LAQEVVVFEDQDALLPCLLTD-  115 (292)
T ss_dssp             ---CEEC-CBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEE-SCSEEEEETTSCEECCEEESS-
T ss_pred             ---eEEe-ccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccc-cCCeEEEcCCCcEEEeeeCCC-
Confidence               1111 1122349999999999999999999764 33455666777766654322 344577889999999999988 


Q ss_pred             cC--CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         166 PT--PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       166 p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      |.  +.+.|+++++..+...      ..........|.|.++..+|.|.|+|.+.|..+...+..+.|.|..
T Consensus       116 ~~~~~~v~W~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          116 PVLEAGVSLVRVRGRPLMRH------TNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             GGGGSSEEEEEGGGCCCCSS------CCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CCcceeEEEEecCCCccccC------CcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            43  7899999655443211      1222223445999999999999999999998876656688888885

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.85  E-value=3.7e-21  Score=138.85  Aligned_cols=181  Identities=18%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeee----eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIH----EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~----~~~~~   85 (238)
                      +.. +..+.+.+|+++.|.|.+..                          .|.+.+.|+|+.. .......    .....
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~   55 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQ--------------------------LPKNFAYWFQQKSDKNILLLIYMDNKRPSG   55 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETT--------------------------GGGSCCEEEEECTTCCEEEEEBTTTBCCTT
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCC--------------------------CCCCeEEEEEECCCCCcEEEEEeccccCCC
Confidence            345 77889999999999999742                          2244699998542 1111000    00001


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-C-C--cceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-P-M--TKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~-~--~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ...|+.+.. ....++|.|.+++.+|+|.|+|.+.+. . .  ....+.+.|..    +|.+...  .....+..|+.+.
T Consensus        56 ~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~--~~~~~~~~g~~v~  132 (212)
T 1nfd_E           56 IPERFSGST-SGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVF--PPSPEELRTNKAT  132 (212)
T ss_dssp             SCTTEEEEE-ETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECC--CCCHHHHHTTEEC
T ss_pred             ccccEEEEe-eCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEee--CCchHhccCCceE
Confidence            135666654 345669999999999999999999852 2 1  12234566642    3333221  1112345688999


Q ss_pred             EEEEEccc-cC-CeEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.|.+.|. |. +.+.|++ ++..+......   ...... ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       133 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          133 LVCLVNDFYPGSATVTWKA-NGATINDGVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CCEEEEEEBSSCCEEEEEE-TTEEECSSCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EEEEEEeeECCccEEEEEE-CCeEcCCCeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            99999886 55 7999999 55544321110   000111 122356899999999999999999998873

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.85  E-value=4.9e-20  Score=157.56  Aligned_cols=187  Identities=24%  Similarity=0.380  Sum_probs=135.9

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.+...+....+.+|+++.|.|.+.                          +.|.+.+.|++++..+..        
T Consensus       427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~~~g~~l~~--------  472 (816)
T 3dmk_A          427 FDPPVIRQAFQEETMEPGPSVFLKCVAG--------------------------GNPTPEISWELDGKKIAN--------  472 (816)
T ss_dssp             SCCCEEEEECCCEEECSSSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCS--------
T ss_pred             cCCCceEecCcceEEcCCCCEEEEEEEe--------------------------cCCCCEEEEEECCEECCC--------
Confidence            3567777777888899999999999985                          345678999998765421        


Q ss_pred             cCccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEE
Q psy7941          86 NNARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        86 ~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                       ..++....    .......|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+..   .....+..|+.+.|.|
T Consensus       473 -~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~---~~~~~v~~G~~v~l~C  548 (816)
T 3dmk_A          473 -NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAIVAGETLIVTC  548 (816)
T ss_dssp             -CTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECC---CCCEEEETTCCEEEEC
T ss_pred             -CCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEc---cCCeEEecCCeEEEEE
Confidence             22222211    1122347999999999999999999875 3345566778877765432   3345678899999999


Q ss_pred             EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         161 KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       161 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .+.+.|.+.+.|++ ++..+...      .......++.|.|.++. .+|.|.|+|.|.|..|...+..+.+.|..+|
T Consensus       549 ~~~g~p~~~i~W~k-~~~~l~~~------~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p  619 (816)
T 3dmk_A          549 PVAGYPIDSIVWER-DNRALPIN------RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP  619 (816)
T ss_dssp             CEECSSEEEEEEEE-TTEESCCS------TTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCC
T ss_pred             EecCCCCCEEEEEE-CCeEcccC------CceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCC
Confidence            99999999999999 55444321      12223345679999997 5899999999999998655667788887765

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.85  E-value=4.6e-20  Score=129.70  Aligned_cols=158  Identities=19%  Similarity=0.332  Sum_probs=102.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee---e-Eeec--Cc
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE---H-VITN--NA   88 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~---~-~~~~--~~   88 (238)
                      ...+.+.+|++++|.|.+...                         .+.+.+.|+|.+...+.....   . ....  .+
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~-------------------------~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~   60 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPL-------------------------ASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD   60 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCC-------------------------CSCSEEEEESSSSCEEEEECSSSCEEECSSTTTT
T ss_pred             cceEEEEeCCCEEEeCCCCCC-------------------------CceeEEEEEecCCeEEEEEECCCCeeEcchhcCC
Confidence            457789999999999987421                         124579999953222221110   0 1111  25


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-ccccC
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-KGYPT  167 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~  167 (238)
                      |+.+.   ....+|.|.+++.+|+|.|+|.+.+.........|.|..++..+.      +.+ .+..+.|.|.+ .| |.
T Consensus        61 R~~l~---~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P~------i~~-~~~~v~L~C~~~~g-p~  129 (180)
T 2dru_A           61 RVDLD---KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPM------IYW-ECSNATLTCEVLEG-TD  129 (180)
T ss_dssp             TEEEC---TTTCCEEECSCCGGGCEEEEEEEESSSEEEEEEEEEEECCCCCCE------EEE-EGGGTEEEEECSSC-TT
T ss_pred             eEEEe---CCCccEEEcCCCHHHCeEEEEEEEcCCeEEEEEEEEEECCCCCCE------EEe-cCCCEEEEEEeCCC-CC
Confidence            66652   234589999999999999999997655334455677765432111      111 34669999999 66 89


Q ss_pred             CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         168 PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       168 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.+.|++ ++..+..            ..+..|.+. . .+|.|.|+|.|.|..+.
T Consensus       130 p~i~W~~-~~~~l~~------------~~~~~l~~~-~-~~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          130 VELKLYQ-GKEHLRS------------LRQKTMSYQ-W-TNLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             CEEEEEE-TTEEEEE------------ESSSEEEEE-C-SCCSSCEEEEEEETTEE
T ss_pred             CEEEEEE-CCeECcC------------CCCCEEEEE-E-hhcCccEEEEEecCcCc
Confidence            9999999 5544431            122344442 2 68999999999999983

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.85  E-value=7.9e-20  Score=135.95  Aligned_cols=187  Identities=16%  Similarity=0.235  Sum_probs=106.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee---
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH---   80 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~---   80 (238)
                      .|.+...+..+.+.+|+++.|.|.+...                          +.+.+.|+|..  ...  .....   
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~   55 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEG--------------------------STGYIHWYLHQEGKAPQRLLYYDSYT   55 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-------------------------------CEEEEEEECTTSCCEEEEEEETTT
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccC--------------------------CCcEEEEEEECCCCCcEEEEEEecCc
Confidence            5677888899999999999999998642                          24569999942  111  11111   


Q ss_pred             e-eEee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEcCC---------------
Q psy7941          81 E-HVIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVIPP---------------  137 (238)
Q Consensus        81 ~-~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~~---------------  137 (238)
                      . ....   .+.++.........++|.|.+++.+|+|.|+|.+.+...    ....+.|.|..++               
T Consensus        56 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  135 (259)
T 3omz_A           56 SSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDG  135 (259)
T ss_dssp             CCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-----------------
T ss_pred             CccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccC
Confidence            0 0000   012232333334566899999999999999999976532    2334567776532               


Q ss_pred             cccccccCCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCC-eee--Eee-cCC---CCCcceEEE-----eeceEEEEE
Q psy7941         138 DISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDN-KEI--IVR-SNP---PSSQKVFSV-----ESEVLSLTK  204 (238)
Q Consensus       138 ~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~-~~~--~~~-~~~---~~~~~~~~~-----~~~~l~i~~  204 (238)
                      ...+...+..+.+.+|+.+.|.|.+.+ .|.+.+.|++... ...  ... ...   .........     ....|.|.+
T Consensus       136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  215 (259)
T 3omz_A          136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA  215 (259)
T ss_dssp             -CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred             CeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence            112223345577899999999999877 4788999998432 111  100 000   000111111     124699999


Q ss_pred             eecCCCeEEEEEeeeC
Q psy7941         205 VTRSEMGAYQCIAANG  220 (238)
Q Consensus       205 ~~~~d~G~y~C~~~n~  220 (238)
                      ++.+|+|.|+|.+.+.
T Consensus       216 v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          216 LQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCGGGCSEEEEEEESC
T ss_pred             CChhHCEEEEEEEeCc
Confidence            9999999999999753

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=147.83  Aligned_cols=188  Identities=16%  Similarity=0.220  Sum_probs=118.0

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee---eee-eeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL---AIH-EHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~---~~~-~~~~~~   86 (238)
                      ...|..+.+.+|+++.|.|.+.+                          .|.+.+.|+|++. ....   ... ......
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~   57 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTS--------------------------SGSITVNWYQQLPGMAPKLLIYRDAMRPSGV   57 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEec--------------------------cCCceEEEEEeCCCCCcEEEEEeccccCccc
Confidence            34567789999999999999953                          2356799999752 1111   000 000112


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEE----cCCcccccccCCceeecCCCcEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVV----IPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ..|+... ......+|.|.+++.+|+|.|+|.+.+...    ....+.|.|.    .+|.+...  +....+.+|+.+.|
T Consensus        58 ~~r~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~--~~~~~~~~g~~v~l  134 (523)
T 2rcj_C           58 PTRFSGS-KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLF--PPSSEELQANKATL  134 (523)
T ss_pred             CCcEEEe-cCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEec--CCcccccCCCceEE
Confidence            3466532 234566899999999999999999977432    2234567774    33433322  22334567889999


Q ss_pred             EEEEccccCC--eEEEEeCCCeeeEeecCC---CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEE
Q psy7941         159 VCKAKGYPTP--KITWRREDNKEIIVRSNP---PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       159 ~C~~~~~p~~--~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      .|.+.|.|++  .+.|++ ++..+......   ...........+.|.|..+..+|.|.|+|.|.|..|.. ..++.
T Consensus       135 ~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~  209 (523)
T 2rcj_C          135 VCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVA  209 (523)
T ss_pred             EEEeccccCCceEEEEec-CCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-cccee
Confidence            9999987654  999999 44433211100   00000001112369999999999999999999998743 44443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.85  E-value=1.2e-19  Score=137.14  Aligned_cols=185  Identities=13%  Similarity=0.231  Sum_probs=114.0

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee------ee
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH------EH   82 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~------~~   82 (238)
                      ..+..+.+.+|+++.|.|.+.....                        ..+.+.|+|+...  .  +....      ..
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~   82 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTF------------------------TSYVMHWVKQKPGQGLEWIGYINPYNDGTKY   82 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcc------------------------cccEEEEEEECCCCCcEEEEEEecCCCcccc
Confidence            3456788999999999999864210                        0346999996421  1  11100      00


Q ss_pred             EeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C-----cceeeEEEEEcC-----------C---cccc
Q psy7941          83 VITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M-----TKQMAFLEVVIP-----------P---DISS  141 (238)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~-----~~~~~~l~v~~~-----------~---~~~~  141 (238)
                      .....+|+.+... ....++|.|.+++.+|+|.|+|.+.+.. .     ....+.|.|..+           +   ...+
T Consensus        83 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v  162 (291)
T 2gki_A           83 NEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVM  162 (291)
T ss_dssp             CGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCE
T ss_pred             CcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceE
Confidence            0012356666543 2356799999999999999999997652 1     112345666551           1   1112


Q ss_pred             cccCCceeecCCCcEEEEEEEccccCC------eEEEEeCC-Ce--eeEeecC----CCCCcceEE-E--eeceEEEEEe
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYPTP------KITWRRED-NK--EIIVRSN----PPSSQKVFS-V--ESEVLSLTKV  205 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p~~------~~~W~~~~-~~--~~~~~~~----~~~~~~~~~-~--~~~~l~i~~~  205 (238)
                      ...+..+.+.+|+.+.|.|.+.+.|.+      .+.|+++. +.  .......    ......... .  ....|.|.++
T Consensus       163 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  242 (291)
T 2gki_A          163 SQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSV  242 (291)
T ss_dssp             ECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCC
Confidence            223445678899999999999887665      89999953 22  1111110    000111111 1  1237999999


Q ss_pred             ecCCCeEEEEEeeeCC
Q psy7941         206 TRSEMGAYQCIAANGV  221 (238)
Q Consensus       206 ~~~d~G~y~C~~~n~~  221 (238)
                      +.+|+|.|+|.+.|..
T Consensus       243 ~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          243 QAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             CHHHCEEEEEEEccCC
Confidence            9999999999999854

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=135.70  Aligned_cols=192  Identities=20%  Similarity=0.310  Sum_probs=117.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee-e
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH-E   81 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~-~   81 (238)
                      ..+.+...+..+.+.+|+++.|.|.+......                     ....+.+.|+++.. . .  +.... .
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~k~~~g~~~~~l~~~~~~   72 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVH---------------------SNGNTYLRWYLQKPGQSPKVLIYKVSN   72 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCccc---------------------ccCCceEEEEEECCCCCCEEEEEecCC
Confidence            45677788889999999999999998643210                     00035699998642 1 1  11000 0


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcc--------------------
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDI--------------------  139 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~--------------------  139 (238)
                      .......|+.+.. ....++|.|.+++.+|+|.|+|.+.+...  ....+.|.|...+..                    
T Consensus        73 ~~~~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~  151 (268)
T 1x9q_A           73 RVSGVPDRFSGSG-SGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDG  151 (268)
T ss_dssp             ECTTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGG
T ss_pred             CCCCCcccEEEEc-CCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCcccccccccccccccccc
Confidence            0001246777654 34567999999999999999999976532  123345666643210                    


Q ss_pred             -cccccCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Ee-ec----------CCCCCcceEEEe-----e
Q psy7941         140 -SSEETSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IV-RS----------NPPSSQKVFSVE-----S  197 (238)
Q Consensus       140 -~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~-~~----------~~~~~~~~~~~~-----~  197 (238)
                       .....+....+.+|+.+.|.|.+.+.+  .+.+.|++.. +...  .. ..          ............     .
T Consensus       152 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  231 (268)
T 1x9q_A          152 GVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSS  231 (268)
T ss_dssp             GCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTE
T ss_pred             ceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCE
Confidence             011112346788999999999998865  3799999842 2211  11 00          001112222211     2


Q ss_pred             ceEEEEEeecCCCeEEEEEeeeC
Q psy7941         198 EVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       198 ~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ..|.|.+++.+|+|.|+|.+.+.
T Consensus       232 ~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          232 VYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCHHHCEEEEEEEccC
Confidence            47999999999999999999974

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.85  E-value=6.4e-20  Score=135.24  Aligned_cols=185  Identities=19%  Similarity=0.301  Sum_probs=116.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee-ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH-EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~-~~   82 (238)
                      .+.+...+..+.+.+|+++.|.|.. +                          .+.+.+.|+|..  ...  ..... ..
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C~~-~--------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~   54 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNCDP-V--------------------------SNHLYFYWYKQILGQQMEFLVNFYNGK   54 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEEEC-C--------------------------TTCCEEEEEEEETTTEEEEEEEEETTE
T ss_pred             CcceEeCCceEEecCCCCEEEEEEc-C--------------------------CCCCEEEEEEECCCCCcEEEEEECCCc
Confidence            3567788889999999999999933 1                          235579999832  111  11110 11


Q ss_pred             -Eeec---CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEEc------CCcccccccCCc
Q psy7941          83 -VITN---NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVVI------PPDISSEETSGD  147 (238)
Q Consensus        83 -~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~~~~~~~~~~~~  147 (238)
                       ....   .+|+.+.......++|.|.+++.+|+|.|+|.+.+..     .....+.+.|..      +|.+... .+..
T Consensus        55 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~  133 (245)
T 4ei6_B           55 VMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVF-EPSE  133 (245)
T ss_dssp             EEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEE-CCCH
T ss_pred             eeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEe-CCCc
Confidence             1111   1788877655678899999999999999999997421     122344577763      3333221 1222


Q ss_pred             eeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQC  215 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C  215 (238)
                      ..+..|+.+.|.|.+.| .|.+ .+.|++ ++..+........         .... ......|.|.....+| .|.|+|
T Consensus       134 ~~~~~g~~v~l~C~~~g~~p~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~~g~ytC  211 (245)
T 4ei6_B          134 AEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRC  211 (245)
T ss_dssp             HHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTSTTCC-EEEEEEEEEEHHHHSCTTCEEEE
T ss_pred             ccccCCCceEEEEEEeeEeCCCeEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEEcHHHhccCCCeEEE
Confidence            33456899999999988 5555 899999 5555432111000         0111 1122357788777778 899999


Q ss_pred             EeeeCCC
Q psy7941         216 IAANGVP  222 (238)
Q Consensus       216 ~~~n~~g  222 (238)
                      .|.|...
T Consensus       212 ~v~~~~l  218 (245)
T 4ei6_B          212 QVQFYGL  218 (245)
T ss_dssp             EEEECCB
T ss_pred             EEEECCC
Confidence            9999764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.85  E-value=2.6e-19  Score=130.25  Aligned_cols=182  Identities=17%  Similarity=0.276  Sum_probs=111.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee----eEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE----HVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~----~~~--   84 (238)
                      +..+.+.+|+++.|.|.+.....                        ..+.+.|+|+.. . .  +.....    ...  
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~   62 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTF------------------------SGYGMHWVRQAPGKGLEWVALISYDESNKYYAD   62 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTSCCEEECT
T ss_pred             CCCEEEcCCCcEEEEEEecCccc------------------------CCceEEEEEECCCCCcEEEEEEecCCCccccCc
Confidence            35778999999999999974211                        134699999642 1 1  111000    001  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc----CCcccccccCCceeecC
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI----PPDISSEETSGDMMVPE  152 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~~~~~~~~~~~~~~~~~  152 (238)
                      ...+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+...       ....+.|.|..    +|.+.... + ...+..
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~-~~~~~~  140 (223)
T 1dee_B           63 SVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV-S-CENSNP  140 (223)
T ss_dssp             TTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE-C-TTCCCS
T ss_pred             ccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec-C-CcccCC
Confidence            124688876543 3577999999999999999999976531       11334677763    23322111 1 122467


Q ss_pred             CCcEEEEEEEccc-cCC-eEEEEeCCCeeeEe-ecCCC-CCcceEEEeeceEEEEEeec--CCCeEEEEEeeeCCCC
Q psy7941         153 GGSAKLVCKAKGY-PTP-KITWRREDNKEIIV-RSNPP-SSQKVFSVESEVLSLTKVTR--SEMGAYQCIAANGVPP  223 (238)
Q Consensus       153 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~n~~g~  223 (238)
                      |+.+.|.|.+.+. |.| .+.|++.++..+.. ..... ...... ...+.|.|.....  +|.|.|+|.|.|..+.
T Consensus       141 g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          141 SSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             CCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            8999999999885 777 99999944433321 00000 001111 1233577766655  6789999999999883

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.84  E-value=5.1e-20  Score=137.65  Aligned_cols=185  Identities=16%  Similarity=0.245  Sum_probs=116.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eee-ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIH-EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~-~~   82 (238)
                      .+.+..++..+.+.+|+++.|.|.+..                           +.+.+.|+|..  .....  ... ..
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~   78 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPIS---------------------------GHTALYWYRQSLGQGPEFLIYFQGTG   78 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCBT---------------------------TCCEEEEEEECTTSCCEEEEEEETTE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeCC---------------------------CCceEEEEEECCCCCcEEEEEECCCC
Confidence            456777888999999999999999752                           24569999932  21111  110 00


Q ss_pred             Eeec----CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC---CCcceeeEEEEEc------CCcccccccCCcee
Q psy7941          83 VITN----NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN---PMTKQMAFLEVVI------PPDISSEETSGDMM  149 (238)
Q Consensus        83 ~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~  149 (238)
                      ....    .+|+.+.......++|.|.+++.+|+|.|+|.+.+.   ........+.|..      +|.+... .+....
T Consensus        79 ~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~  157 (268)
T 3pl6_D           79 AADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVF-EPSEAE  157 (268)
T ss_dssp             EEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHH
T ss_pred             ccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEe-CCCccc
Confidence            1111    168887765556789999999999999999999763   1223344577764      3332221 122233


Q ss_pred             ecCCCcEEEEEEEccccC-C-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeEEEEEe
Q psy7941         150 VPEGGSAKLVCKAKGYPT-P-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGAYQCIA  217 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p~-~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~  217 (238)
                      +..|+.+.|.|.+.|.++ + .+.|++ ++..+.......         ..... ......|.+.....+| .|.|+|.|
T Consensus       158 ~~~g~~v~L~C~~~g~~p~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~l~i~~~~~~d~~g~YtC~v  235 (268)
T 3pl6_D          158 ISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNHFRCQV  235 (268)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEE-SSSEECTTEEECSSCEESSTTCTTCC-EEEEEEEEEEHHHHSCTTCEEEEEE
T ss_pred             ccCCCceEEEEEECcccCCCeEEEEEE-CCEECCCCeEeccccccccccCCCCc-EEEEEEEEEcHHHhccCCCEEEEEE
Confidence            456899999999988554 4 899999 454442211000         00111 1122357777777777 99999999


Q ss_pred             eeCCC
Q psy7941         218 ANGVP  222 (238)
Q Consensus       218 ~n~~g  222 (238)
                      .|...
T Consensus       236 ~~~~l  240 (268)
T 3pl6_D          236 QFYGL  240 (268)
T ss_dssp             EECCB
T ss_pred             EcCCC
Confidence            99864

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.84  E-value=1e-20  Score=148.76  Aligned_cols=181  Identities=17%  Similarity=0.268  Sum_probs=122.6

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                         +.|.+.++|+|++..+...       
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~k~g~~~~~~-------   51 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEG-------------------------NDQGVKYSWKKDGKSYNWQ-------   51 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEES-------------------------CCSSCEEEEEESSSBCCTT-------
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEec-------------------------CCCCceEEEEECCcCcccc-------
Confidence            46899999999999999999999999963                         1346789999987654221       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEE-
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKA-  162 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-  162 (238)
                       ..++...   ....+|.|.+++.+|+|.|+|.+.+.....  ..+.+.|...+.+..  .+....+.+|+.+.|.|.+ 
T Consensus        52 -~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~--~~~~~~~~~G~~v~l~C~~~  125 (395)
T 1bih_A           52 -EHNAALR---KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA--KTHEKTPIEGRPFQLDCVLP  125 (395)
T ss_dssp             -TTTEEEC---TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC--EEEEECCBTTEEEEECCCCC
T ss_pred             -cceEEEe---cCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc--CCcceeeeeCCcEEEEecCC
Confidence             1112111   122389999999999999999998753322  234455543222221  1234567799999999996 


Q ss_pred             ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe---EEEEEeeeCCCCC
Q psy7941         163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG---AYQCIAANGVPPT  224 (238)
Q Consensus       163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~n~~g~~  224 (238)
                      .+.|.+.+.|++++....................++.|.|.++..+|.|   .|+|.+.|..|..
T Consensus       126 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~  190 (395)
T 1bih_A          126 NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE  190 (395)
T ss_dssp             EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             CCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccce
Confidence            7899999999995411111000011122233344568999999999999   9999999998853

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=147.87  Aligned_cols=198  Identities=20%  Similarity=0.279  Sum_probs=128.4

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeee----------------eeecCCeEEeccC--------CCCceEEEEeCCcee
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDT----------------HVNTGGSIVFPTD--------SSAMKVAWIKADTKA   75 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--------~~~~~~~W~~~~~~~   75 (238)
                      +...|.+.|.|.+.+..+.. ...+.+.                .+..|+.+.+.|.        .|.+.+.|++++..+
T Consensus        88 v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~  166 (339)
T 3o4o_C           88 ALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL  166 (339)
T ss_dssp             BCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBC
T ss_pred             CCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeC
Confidence            56789999999998865432 2222222                2456788888776        578899999976654


Q ss_pred             eeeeeeeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcC-----CcccccccC
Q psy7941          76 VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIP-----PDISSEETS  145 (238)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~-----~~~~~~~~~  145 (238)
                      ..        ...++....   ....|.|.+++.+|+|.|+|.+.+...     ....+.|.|...     |.+..  .+
T Consensus       167 ~~--------~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~--~~  233 (339)
T 3o4o_C          167 DK--------DNEKFLSVR---GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS--PL  233 (339)
T ss_dssp             CT--------TCSSEEECT---TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECC--CS
T ss_pred             CC--------CCceeEEcC---CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEec--CC
Confidence            21        122333222   112899999999999999999987532     234556777643     23322  24


Q ss_pred             CceeecCCCcEEEEEEE---cccc-CCeEEEEeCCCeeeEeecC---CCCCcceEEEeec------eEEEEEeecCCC-e
Q psy7941         146 GDMMVPEGGSAKLVCKA---KGYP-TPKITWRREDNKEIIVRSN---PPSSQKVFSVESE------VLSLTKVTRSEM-G  211 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~---~~~p-~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~------~l~i~~~~~~d~-G  211 (238)
                      ....+..|+.+.|.|.+   .|.| .+.+.|+++ +..+.....   ............+      .|.|.++..+|. |
T Consensus       234 ~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G  312 (339)
T 3o4o_C          234 KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN-DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM  312 (339)
T ss_dssp             CCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESS-SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCC
T ss_pred             ceeEeccCCCEEEEEEEECCCCCCCCceEEEEEC-CeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCc
Confidence            45568889999999999   8988 889999984 433211100   0000111111122      699999999998 9


Q ss_pred             EEEEEeeeCCCCCccceEEEEE
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .|+|.|.|..|.. +..+.+.+
T Consensus       313 ~Y~C~a~N~~G~~-~~~~~~~~  333 (339)
T 3o4o_C          313 DFKCVVHNTLSFQ-TLRTTVKE  333 (339)
T ss_dssp             CCEEEEEETTEEE-CCBCCCCC
T ss_pred             cEEEEEEeccCce-EEEEEhhH
Confidence            9999999999944 55555443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.84  E-value=1.6e-20  Score=134.69  Aligned_cols=159  Identities=20%  Similarity=0.345  Sum_probs=103.8

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCe
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (238)
                      +.+|+++.|.|.+                             |.+.+.|+|++..+....                 ...
T Consensus        15 ~~~G~~v~L~C~~-----------------------------p~~~i~W~k~g~~l~~~~-----------------~~~   48 (204)
T 1sy6_A           15 YQEDGSVLLTCDA-----------------------------EAKNITWFKDGKMIGFLT-----------------EDK   48 (204)
T ss_dssp             CCSSSEEEEEECS-----------------------------CSSEEEEEETTEEEEEEE-----------------SSC
T ss_pred             ecCCCeEEEEEcC-----------------------------CCCEEEEEECCEECCCCC-----------------CCC
Confidence            3579999999987                             145699999776542210                 011


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------C-------------------C----cccccccCCceee
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------P-------------------P----DISSEETSGDMMV  150 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------~-------------------~----~~~~~~~~~~~~~  150 (238)
                      .+|.|.+++.+|+|.|+|.+.+..  +....+.+..      .                   .    .......+ ....
T Consensus        49 ~~L~i~~v~~~DsG~Y~C~~~~~~--s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~  125 (204)
T 1sy6_A           49 KKWNLGSNAKDPRGMYQCKGSQNK--SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVS  125 (204)
T ss_dssp             CCEEEEEGGGCCEEEEEEESSSSC--CCCEEEEEEC------------------------------------CCC-CEEE
T ss_pred             CeEEeCCCCcCCCEEEEEEecCCC--CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCC-ceee
Confidence            279999999999999999964422  2223344330      0                   0    00011111 1222


Q ss_pred             cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe-ecCCCeEEEEEeeeCCCCCccceE
Q psy7941         151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV-TRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      .+|+.+.|.|.  +.|.|.+.|++ ++..+....    ........++.|.|.++ ..+|+|.|+|.|.|..|...+..+
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k-~~~~l~~~~----~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l  198 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQH-NDKNIGGDE----DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL  198 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEE-TTEEESCCT----TCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEE
T ss_pred             ecCCcEEEEcC--CCCCCceEEEE-CCEECCCcc----CCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEE
Confidence            38999999998  78889999999 555443211    01112234678999999 999999999999999996557777


Q ss_pred             EEEEE
Q psy7941         230 MLHVH  234 (238)
Q Consensus       230 ~l~V~  234 (238)
                      .|.|.
T Consensus       199 ~l~~~  203 (204)
T 1sy6_A          199 YLRAR  203 (204)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77664

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.84  E-value=6.8e-20  Score=143.58  Aligned_cols=193  Identities=22%  Similarity=0.368  Sum_probs=130.8

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeee---------------eeecCCeEEeccC----CCCceEEEEeCCceeeeeeeeeE
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDT---------------HVNTGGSIVFPTD----SSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~----~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      .|.+.|+|.+.|..+...+..+.+.               .+..|+.+.+.|.    .|.+.+.|++++......     
T Consensus        72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~-----  146 (382)
T 1cs6_A           72 KDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP-----  146 (382)
T ss_dssp             HHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-----
T ss_pred             ccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccc-----
Confidence            7899999999987654433222221               2556788888876    367899999987653221     


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-----ceeeEEEEEc------CCcccccccCCceeec
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-----KQMAFLEVVI------PPDISSEETSGDMMVP  151 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~l~v~~------~~~~~~~~~~~~~~~~  151 (238)
                        .+.+.....   ...+|.|.+++.+|+|.|+|.+.+... .     .....+.+..      +|.+.. ..+....+.
T Consensus       147 --~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~-~~~~~~~~~  220 (382)
T 1cs6_A          147 --ADGRRFVSQ---TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA-KFPADTYAL  220 (382)
T ss_dssp             --CCSSEEECT---TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE-CCCSEEEEE
T ss_pred             --cCceEEEec---CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec-cCCCceEEe
Confidence              122221111   122799999999999999999976431 1     1123344432      222221 123456788


Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEE
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML  231 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l  231 (238)
                      +|+.+.|.|.+.+.|.+.+.|+++++. +..         ........|.|.++..+|.|.|+|.|.|..|. .+..+.|
T Consensus       221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~-~~~---------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l  289 (382)
T 1cs6_A          221 TGQMVTLECFAFGNPVPQIKWRKLDGS-QTS---------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRI  289 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSC-CSC---------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEE
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCcc-ccc---------EEecCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEE
Confidence            999999999999999999999995543 211         01223457999999999999999999999985 4778888


Q ss_pred             EEEeec
Q psy7941         232 HVHCTY  237 (238)
Q Consensus       232 ~V~~~p  237 (238)
                      .|..+|
T Consensus       290 ~V~~~p  295 (382)
T 1cs6_A          290 IIHAQP  295 (382)
T ss_dssp             EEEEEE
T ss_pred             EEecCC
Confidence            888766

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.84  E-value=1.1e-19  Score=132.46  Aligned_cols=179  Identities=21%  Similarity=0.329  Sum_probs=111.3

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee--eeee----eeEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV--LAIH----EHVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~--~~~~----~~~~--   84 (238)
                      +..+.+.+|+++.|.|.+.....                        ..+.+.|+|+.. . ..  ....    ....  
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~   62 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRI------------------------SAHTMNWVRRVPGGGLEWVASISTSSTYRDYAD   62 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECGGGCCEEECT
T ss_pred             CCCeEecCCCCEEEEEEecCccc------------------------CCceEEEEEeCCCCCcEEEEEEccCCCccccCc
Confidence            45678999999999999964210                        034699998642 1 11  1100    0001  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC---------cceeeEEEEEcC----CcccccccCCceee
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM---------TKQMAFLEVVIP----PDISSEETSGDMMV  150 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~~~~~~l~v~~~----~~~~~~~~~~~~~~  150 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...         ....+.|.|...    |.+.... +. ..+
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~-~~~  140 (225)
T 1op3_H           63 AVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLA-PS-SKS  140 (225)
T ss_dssp             TTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEEC-CC-TTC
T ss_pred             ccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEec-cc-ccc
Confidence            124678776542 3567999999999999999999977532         113456777752    2222211 11 124


Q ss_pred             cCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|+.+.|.|.+.|. |.| .+.|++++. .+.......  ..... ....+.|.|.....+| |.|+|.|.|..+
T Consensus       141 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~-~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          141 TSGGTAALGCLVKDYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             CCCCEEEEEEEEEEEBSSCCEEECCTTSC-CTTCEECCCEECTTSC-EEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             cCCCcEEEEEEEEeEECCCeEEEEecCCC-cCCeEecCceeCCCCC-EEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            679999999999885 777 999999543 211000000  00111 1123468888888788 999999999765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=143.62  Aligned_cols=181  Identities=15%  Similarity=0.255  Sum_probs=106.1

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee-cCccEEEEEcC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-NNARLSVTHND   96 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   96 (238)
                      ..+.+|+++.|.|.+.+...                        |...+.|++++..+.......... .+..+....  
T Consensus       127 ~~~~~g~~~~l~C~~~g~p~------------------------~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s--  180 (327)
T 2wng_A          127 ARATPQHTVSFTCESHGFSP------------------------RDITLKWFKNGNELSDFQTNVDPVGESVSYSIHS--  180 (327)
T ss_dssp             SCBCTTCEEEEEEEEEEEBS------------------------SCCEEEEEETTEECCCEEEEEECSSCCSCEEEEE--
T ss_pred             cccCCCCEEEEEEEEeCccC------------------------CCcEEEEEECCEEccccccccccccCCCceEEEE--
Confidence            56788999999999864211                        112799999876543322111111 223344433  


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCCcc--e--eeEE--EEEcCCcccccccCCceeecCCCcEEEEEEEccc-cCC-
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTK--Q--MAFL--EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTP-  168 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~--~~~l--~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  168 (238)
                          .|.|.....+|.|.|+|.+.+.....  .  .+.+  .+..+|.+......    +.+|+.+.|.|.+.|. |++ 
T Consensus       181 ----~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~----~~~G~~v~l~C~~~g~~p~~~  252 (327)
T 2wng_A          181 ----TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP----VRAENQVNVTCQVRKFYPQRL  252 (327)
T ss_dssp             ----EEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC----CSSTTCCEEEEEEEEEBSSCE
T ss_pred             ----EEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC----cCCCCcEEEEEEEccccCCCc
Confidence                68888777778899999998754331  1  2222  23345554432211    6789999999999995 444 


Q ss_pred             eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEE
Q psy7941         169 KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .+.|++ ++..+........  ...........|.|..+..+|.|.|+|.|.|..|...++++.+.+
T Consensus       253 ~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          253 QLTWLE-NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             EEEEEE-TTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred             EEEEEE-CCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEEe
Confidence            899999 5555543211000  000001112358888888999999999999999977777776543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.84  E-value=8.6e-20  Score=148.76  Aligned_cols=184  Identities=16%  Similarity=0.237  Sum_probs=112.1

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.+........+.+|+++.|.|.+.+.                         .|.+ .+.|++++.............
T Consensus       218 ~~P~v~~~~~~~~~~~G~~~~l~C~~~g~-------------------------~P~p~~v~W~k~g~~~~~~~~~~~~~  272 (523)
T 2rcj_C          218 KGPSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPQPVTVSWNSGALTSGVHTFPAVLQ  272 (523)
T ss_pred             cCCEEEecCCCcccccCCceEEEEEEece-------------------------eCCCeEEEEecCCcccceEeCCcEec
Confidence            34555433334456799999999998632                         1344 799999876532211111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      .++.+....      .|.|.+++.+| |.|+|.+.|... ....+.+.+...|.+..........+.+|+.+.|.|.+.|
T Consensus       273 ~~g~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g  345 (523)
T 2rcj_C          273 SSGLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVD  345 (523)
T ss_pred             CCCcEEEEE------EEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEec
Confidence            233333322      89999999999 999999987643 2334445444444432221111122678999999999998


Q ss_pred             ccC----CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         165 YPT----PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       165 ~p~----~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .|+    +.+.|++ ++..+.......  ..........+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       346 ~~p~~~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  409 (523)
T 2rcj_C          346 VSHEDPQVKFNWYV-DGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALP  409 (523)
T ss_pred             ccCCCCceEEEEEE-CCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCC
Confidence            653    4999999 444443211100  000001112235888888899999999999998764

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.84  E-value=2e-20  Score=139.64  Aligned_cols=156  Identities=19%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      +....+.+|+++.|.|.+.                            |.+.+.|  ++..+..         .       
T Consensus       105 ~~~~~v~~G~~v~l~C~~~----------------------------p~~~i~W--~g~~~~~---------~-------  138 (265)
T 2oz4_A          105 LTKPEVSEGTEVTVKCEAH----------------------------PRAKVTL--NGVPAQP---------L-------  138 (265)
T ss_dssp             ESCSEEETTCEEEEEEECC----------------------------TTSEEEE--SSCSSSC---------C-------
T ss_pred             cCCceecCCCcEEEEEEcc----------------------------CCCEEEE--CCEEccC---------C-------
Confidence            3455677899999999874                            3567999  4443310         0       


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEec-C-CCcc---eeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCe
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNT-N-PMTK---QMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPK  169 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~---~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  169 (238)
                        .....|.|..+...|+|.|+|.+.+ . +...   ....|.|..+|.+.....+....+.+|+.+.|.|.+.|.|.|.
T Consensus       139 --~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~  216 (265)
T 2oz4_A          139 --GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPE  216 (265)
T ss_dssp             --SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCE
T ss_pred             --CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCe
Confidence              1122788889999999999999964 2 2222   4566888877776554445566788999999999999999999


Q ss_pred             EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         170 ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       170 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      +.|++++....               ..+.+  ..+..+|+|.|+|.|.|..|. .++++.|.|++|
T Consensus       217 i~W~~~~~~~~---------------~~g~~--~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~p  265 (265)
T 2oz4_A          217 LKCLKDGTFPL---------------PIGES--VTVTRDLEGTYLCRARSTQGE-VTREVTVNVLSP  265 (265)
T ss_dssp             EEEEETTTEEC---------------CTTSC--EECCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             EEEEECCcccC---------------CCCcE--EEeehhhCeEEEEEEECCCCc-EEEEEEEEEecC
Confidence            99999554111               11122  247889999999999999994 488899998764

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.84  E-value=1.4e-19  Score=136.10  Aligned_cols=186  Identities=15%  Similarity=0.257  Sum_probs=115.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-----
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-----   80 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-----   80 (238)
                      .+.. +..+.+.+|++++|.|.+....                        .+.+.+.|++.....    .....     
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~   57 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVT------------------------FSSFAISWVRQAPGQGLEWLGGISPMFGT   57 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSC------------------------CTTSCEEECCBCSSSCCCCCEEECTTTCC
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccC------------------------CCCeEEEEEEeCCCCCCEEEEEEeccCCc
Confidence            4455 7788999999999999986421                        124569999853211    11110     


Q ss_pred             -eeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC--------C--cceeeEEEEEc-------------
Q psy7941          81 -EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP--------M--TKQMAFLEVVI-------------  135 (238)
Q Consensus        81 -~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--------~--~~~~~~l~v~~-------------  135 (238)
                       .......+|+.+... ....++|.|.+++.+|+|.|+|.+.+..        .  ....+.|.|..             
T Consensus        58 ~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~  137 (280)
T 3fku_X           58 PNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGG  137 (280)
T ss_dssp             EEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-------------
T ss_pred             cccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCce
Confidence             011112457777654 4466799999999999999999997641        1  12234566655             


Q ss_pred             CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCC-eeeEe--ecC----CCCCcceEEE---eeceEEEE
Q psy7941         136 PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDN-KEIIV--RSN----PPSSQKVFSV---ESEVLSLT  203 (238)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~-~~~~~--~~~----~~~~~~~~~~---~~~~l~i~  203 (238)
                      .+.+.+...+. ..+.+|+++.|.|.+.+ .+ .+.+.|++... .....  ...    .....+....   ....|.|.
T Consensus       138 ~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  216 (280)
T 3fku_X          138 GIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTIT  216 (280)
T ss_dssp             -CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEEC
T ss_pred             EeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEEC
Confidence            01222222233 77899999999999987 44 47999987322 11110  000    0001111111   12359999


Q ss_pred             EeecCCCeEEEEEeeeCC
Q psy7941         204 KVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n~~  221 (238)
                      +++.+|+|.|+|.+.|..
T Consensus       217 ~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          217 GLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             SCCGGGCSEEEEEEEETT
T ss_pred             CCCHHHCEEEEEEEecCC
Confidence            999999999999999876

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.84  E-value=1.1e-19  Score=126.78  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-e--ecCccEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-I--TNNARLSV   92 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~--~~~~~~~~   92 (238)
                      +.+.+.+|++++|.|.+..                           |.+.+.|++++........... .  ...+|+.+
T Consensus         3 ~~v~~~~G~~VtL~c~~~~---------------------------~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~   55 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV---------------------------PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL   55 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS---------------------------CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE
T ss_pred             cEEEEEcCCCEEEcCCCCC---------------------------CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE
Confidence            4578899999999998731                           2567999998764222111100 0  01334444


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEE
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITW  172 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  172 (238)
                      .   ..+.+|.|.+++.+|+|.|.|.+.+... ...+.|.|..++..+..      .... ....|.|.+.+.|.|.+.|
T Consensus        56 ~---~~~~sL~I~~v~~~DsG~Y~C~~~n~~~-~~~~~L~V~~~~~~p~i------~~~~-~~~~L~C~~~~~p~p~i~W  124 (171)
T 1ccz_A           56 D---TVSGSLTIYNLTSSDEDEYEMESPNITD-TMKFFLYVLEMVSKPMI------YWEC-SNATLTCEVLEGTDVELKL  124 (171)
T ss_dssp             C---TTTCCEEECSCCGGGCEEEEEECTTCCS-CEEEEEEEECCCCCCEE------EEET-TTTEEEEECSSCSSCEEEE
T ss_pred             e---CCCCeEEECCCChhhCceEEEEEeCCCC-cEEEEEEEECcCCCCEE------EEec-CCcEEEEEeCCCCCcEEEE
Confidence            2   2234899999999999999999976544 66677888765432211      1111 1138999999989999999


Q ss_pred             EeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941         173 RREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      ++ ++..+...            ..  +.+.....+|.|.|+|.|.|..|.. +.++
T Consensus       125 ~~-~~~~l~~~------------~~--~~l~~~~~~~~g~Y~C~a~N~~~~~-~~~~  165 (171)
T 1ccz_A          125 YQ-GKEHLRSL------------RQ--KTMSYQWTNLRAPFKCKAVNRVSQE-SEME  165 (171)
T ss_dssp             EE-TTEEEEEE------------SS--SEEEEECSCCSSCEEEEEEETTEEE-EEEE
T ss_pred             EE-CCEECcCC------------cc--eEEEEeccCCCceEEEEEEcccCcc-ccee
Confidence            99 55554321            11  2222234678999999999999833 4443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.84  E-value=5.9e-20  Score=143.10  Aligned_cols=188  Identities=16%  Similarity=0.137  Sum_probs=125.2

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeee------eeecCCeEEecc---CCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDT------HVNTGGSIVFPT---DSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+...|.+.|+|.+.+..+ .+...+...      .+..|+.+.+.|   +.|.+.+.|++++.....            
T Consensus        73 ~v~~~D~G~Y~C~~~n~~~-~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------  139 (363)
T 1wio_A           73 NLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------  139 (363)
T ss_dssp             SCCGGGCEEEEEEETTEEE-EEEEEEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------------
T ss_pred             CCCHHHCEEEEEEEEECCC-cEEEEEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------------
Confidence            4668899999999987532 111222111      245677777765   458889999998654210            


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc----
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG----  164 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----  164 (238)
                              ...+|.|.+++.+|+|.|+|.+.+... ....+.+.|..+|...     ....+.+|+.+.|.|.+.+    
T Consensus       140 --------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~  206 (363)
T 1wio_A          140 --------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEK  206 (363)
T ss_dssp             --------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCS
T ss_pred             --------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEeccccc
Confidence                    012899999999999999999976532 2233445555444332     3456788999999998877    


Q ss_pred             -ccCCeEEEEeCCCeeeEeecC--CCCCcceEEE-----------e--eceEEEEEeecCCCeEEEEEeeeC--CCCCcc
Q psy7941         165 -YPTPKITWRREDNKEIIVRSN--PPSSQKVFSV-----------E--SEVLSLTKVTRSEMGAYQCIAANG--VPPTVS  226 (238)
Q Consensus       165 -~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~-----------~--~~~l~i~~~~~~d~G~y~C~~~n~--~g~~~~  226 (238)
                       .|.|.+.|++++ ..+.....  ..........           .  ...|.|.++..+|+|.|+|.|.|.  .| ..+
T Consensus       207 ~~P~p~i~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g-~~~  284 (363)
T 1wio_A          207 LTGSGELWWQAER-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLH  284 (363)
T ss_dssp             SCEEEEEEEEESS-CCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTC-CEE
T ss_pred             CCCceeEEEecCC-CCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcC-eEE
Confidence             788999999944 33221000  0000111111           1  337999999999999999999999  88 557


Q ss_pred             ceEEEEEE
Q psy7941         227 KRLMLHVH  234 (238)
Q Consensus       227 ~~~~l~V~  234 (238)
                      ..+.|.|.
T Consensus       285 ~~~~l~V~  292 (363)
T 1wio_A          285 QEVNLVVM  292 (363)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeEEEE
Confidence            88888776

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.84  E-value=3.9e-19  Score=135.40  Aligned_cols=166  Identities=14%  Similarity=0.221  Sum_probs=115.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ...+.+.+|+.+.|.|...                         .+.|.+.+.|+|++..+.         ...++.+..
T Consensus         8 ~~~~~v~eg~~v~l~~~~~-------------------------~~~p~~~v~W~k~~~~i~---------~~~~~~~~~   53 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECD-------------------------KMTPKSEFSWSKDYVSTE---------DSPRLEVES   53 (312)
T ss_dssp             CCEEEECTTCCEEEEEECS-------------------------SCCTTCCEEEEETTEECT---------TCTTEEEEE
T ss_pred             ceeEEEecCCeEEEEEEEe-------------------------CCCCCcEEEEEECCEECC---------CCCCEEEEE
Confidence            4467788999999999975                         234577899999876532         244555554


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc------------CCcccccccCCceeecCCCcEEEEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI------------PPDISSEETSGDMMVPEGGSAKLVCKA  162 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~  162 (238)
                      . ....+|.|.+++.+|+|.|+|.+.+.........+.|..            +|.+.... .....+.+|+.+.|.|.+
T Consensus        54 ~-~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~  131 (312)
T 2y23_A           54 K-GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS-ELAVEILEKGQVRFWMQA  131 (312)
T ss_dssp             E-TTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEE-EEEEEECSSSCEEEEEEE
T ss_pred             e-CCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcccccc-CCceEEeeCCCEEEEEEE
Confidence            2 234499999999999999999998754444444455432            45443321 225678899999999999


Q ss_pred             c-cccCCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         163 K-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       163 ~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      . +.|.+.+.|++ ++..+....     ......    ....|.|.++..+|+|.|+|.+.+..+
T Consensus       132 ~~~~p~~~v~W~~-~~~~i~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  190 (312)
T 2y23_A          132 EKLSGNAKVNYIF-NEKEIFEGP-----KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA  190 (312)
T ss_dssp             SCCCSSCEEEEEE-TTEEECSSS-----SCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC
T ss_pred             EeCCCCCEEEEEE-CCEECeeCC-----cEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc
Confidence            8 89999999999 555443211     111111    112499999999999999999986543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.84  E-value=8.1e-20  Score=139.72  Aligned_cols=182  Identities=16%  Similarity=0.141  Sum_probs=117.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+. ..+.+|+++.|.|.+...                           .+.+.|+|++..+....       
T Consensus        23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~---------------------------~~~~~W~k~g~~~~~~~-------   67 (316)
T 3vh8_G           23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR---------------------------FNNFMLYKEDRIHIPIF-------   67 (316)
T ss_dssp             -CCEEEEESC-SEEETTSCEEEEEEBTTB---------------------------CCSEEEEESSCSSSCHH-------
T ss_pred             CCCEeeccCC-CccCCCCCEEEEEEccCC---------------------------CceEEEEeCCCccceee-------
Confidence            4677777776 568899999999998632                           34699999876532110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC----C--CcceeeEEEEEcCC-cccccccCCceeecCCCcEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN----P--MTKQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~----~--~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                             ........|.|.+++.+|+|.|+|.+.+.    .  ..+....|.|...+ .+.+...+. ..+.+|+.+.|.
T Consensus        68 -------~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~  139 (316)
T 3vh8_G           68 -------HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG-PLVKSGERVILQ  139 (316)
T ss_dssp             -------HHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEE
T ss_pred             -------cCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCC-CccCCCCeEEEE
Confidence                   00011228999999999999999998642    1  12344566666432 221111222 237889999999


Q ss_pred             EEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC----ccceEEEEEEe
Q psy7941         160 CKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT----VSKRLMLHVHC  235 (238)
Q Consensus       160 C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~----~~~~~~l~V~~  235 (238)
                      |.+.+ +.+.+.|++++.........   ...........|.|.++..+|+|.|+|.|.|..|..    .+..+.|.|..
T Consensus       140 C~~~~-~~~~~~w~k~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          140 CWSDI-MFEHFFLHKEGISKDPSRLV---GQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             EEESS-CCSEEEEEETTCCSCCEEEE---CEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred             EcCCC-CCcEEEEEECCCccccceee---eeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence            99954 56789999954432111000   000011234579999999999999999999988732    25666777753

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.83  E-value=1.1e-19  Score=136.03  Aligned_cols=185  Identities=18%  Similarity=0.308  Sum_probs=115.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee-e
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE-H   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~-~   82 (238)
                      ...+..++..+.+.+|+++.|.|.+..                           +.+.+.|+|....  .  ...... .
T Consensus        27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~   79 (270)
T 3qib_D           27 GMKVIQTPRYLVKGQGQKAKMRCIPEK---------------------------GHPVVFWYQQNKNNEFKFLINFQNQE   79 (270)
T ss_dssp             -CCCEEECSEEEEETTSCEEEEEECCT---------------------------TCCEEEEEEECTTCCEEEEEEEETTE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEEEecC---------------------------CCceEEEEEECCCCCcEEEEEECCCC
Confidence            356677888899999999999999742                           2456999984321  1  111100 0


Q ss_pred             Eeec---Cc-cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEEc------CCcccccccCCc
Q psy7941          83 VITN---NA-RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVVI------PPDISSEETSGD  147 (238)
Q Consensus        83 ~~~~---~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~~~~~~~~~~~~  147 (238)
                      ....   .. |+.+.......++|.|.+++.+|+|.|+|.+.+..     .....+.+.|..      +|.+... .+..
T Consensus        80 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~  158 (270)
T 3qib_D           80 VLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF-EPSE  158 (270)
T ss_dssp             EEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE-ECCH
T ss_pred             ceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE-CCCc
Confidence            0000   11 77776545567899999999999999999997532     112334577765      3332221 1122


Q ss_pred             eeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGAYQC  215 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~y~C  215 (238)
                      ..+..|+.+.|.|.+.+ +|.+ .+.|++ ++..+.......         ..... ......|.+.....+| .|.|+|
T Consensus       159 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~~g~YtC  236 (270)
T 3qib_D          159 AEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVCTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRC  236 (270)
T ss_dssp             HHHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESCTTSSSCC-EEEEEEEEEEHHHHHSTTCEEEE
T ss_pred             cccccCCceEEEEEecceeCCCeEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEEcHHHhccCCCeEEE
Confidence            23445899999999988 7767 899999 565543211000         00111 1122357777777777 999999


Q ss_pred             EeeeCCC
Q psy7941         216 IAANGVP  222 (238)
Q Consensus       216 ~~~n~~g  222 (238)
                      .+.|...
T Consensus       237 ~v~~~~l  243 (270)
T 3qib_D          237 QVQFYGL  243 (270)
T ss_dssp             EEEECCB
T ss_pred             EEEecCC
Confidence            9999864

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.83  E-value=2.8e-19  Score=131.44  Aligned_cols=185  Identities=18%  Similarity=0.286  Sum_probs=115.9

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee---
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE---   81 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~---   81 (238)
                      +.+..++..+.+.+|+++.|.|.+..                           +.+.+.|+|....    .......   
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~   55 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS---------------------------GHSNVVWYQQTLGKELKFLIQHYEKVE   55 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT---------------------------TCCEEEEEEECTTSCCEEEEEEETTEE
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC---------------------------CCceEEEEEECCCCCCEEEEEEcCCcc
Confidence            45677888999999999999999752                           2456999994211    1111110   


Q ss_pred             -eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec--CC--CcceeeEEEEEc------CCcccccccCCceee
Q psy7941          82 -HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT--NP--MTKQMAFLEVVI------PPDISSEETSGDMMV  150 (238)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~--~~~~~~~l~v~~------~~~~~~~~~~~~~~~  150 (238)
                       ......+|+.+.......++|.|.+++.+|+|.|+|.+.+  ..  .....+.+.|..      +|.+... .+....+
T Consensus        56 ~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~-~~~~~~~  134 (240)
T 3q5y_A           56 RDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF-EPSKAEI  134 (240)
T ss_dssp             EEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHHH
T ss_pred             ccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEe-CCchhhc
Confidence             0011236787776556788999999999999999999962  21  122344566663      2322211 1222334


Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCc----ceEEEeeceEEEEEeecCC-CeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQ----KVFSVESEVLSLTKVTRSE-MGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g  222 (238)
                      ..|+.+.|.|.+.| +|.+ .+.|++ ++..+..........    .......+.|.|.....+| .|.|+|.|.|...
T Consensus       135 ~~g~~v~L~C~~~g~~P~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          135 ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ccCCceEEEEEEeeEECCCeEEEEEE-CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            56889999999988 6666 899999 555543211000000    0001122358888888888 6699999999764

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.83  E-value=6.4e-20  Score=135.98  Aligned_cols=181  Identities=17%  Similarity=0.304  Sum_probs=109.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee----------E
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH----------V   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~----------~   83 (238)
                      .+..+.+.+|+++.|.|.+....                        .+.+.+.|+|............          .
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~   61 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFT------------------------FSSFAMSWGRQTPDKRLELVATINSNGASTYYP   61 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCEEEEEEECTTSSCEECC
T ss_pred             cCCCEEECCCCcEEEEEEeeCcc------------------------ccCceEEEEEECCCCCcEEEEEEecCCCccccC
Confidence            35567899999999999996421                        1134699998542111100000          0


Q ss_pred             eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-----CcceeeEEEEE----cCCcccccccCCceeecCC
Q psy7941          84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-----MTKQMAFLEVV----IPPDISSEETSGDMMVPEG  153 (238)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~----~~~~~~~~~~~~~~~~~~g  153 (238)
                      ....+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+..     .....+.+.|.    .+|.+...  .....+..|
T Consensus        62 ~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g  139 (253)
T 3liz_H           62 DTVKGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL--APGSAAQTN  139 (253)
T ss_dssp             TTTTTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE--CC------C
T ss_pred             cccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe--cCCcccCCC
Confidence            1124677776543 367789999999999999999996642     11233467775    22322211  222335579


Q ss_pred             CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.+.|.|.+.+ +|.+ .+.|++++................ ....+.|.|.....+| |.|+|.|.|..+
T Consensus       140 ~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d-g~ytC~v~~~~~  208 (253)
T 3liz_H          140 SMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL-YTLSSSVTVPSSTWPS-ETVTCNVAHPAS  208 (253)
T ss_dssp             CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTE-EEEEEEEEEETTSTTT-SCCEEEEEEGGG
T ss_pred             CcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCe-EEEEEEEEEcHHHCCC-ceEEEEEEECCC
Confidence            99999999988 7777 899999543111100000000111 1222468888888888 999999999887

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.83  E-value=3.1e-22  Score=170.04  Aligned_cols=194  Identities=17%  Similarity=0.355  Sum_probs=0.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee--
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT--   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--   85 (238)
                      +|.+...+. ..+.+|+++.|.|.+..                          .|.+.+.|++++.............  
T Consensus       550 ~p~i~~~p~-~~~~~G~~v~l~C~~~~--------------------------~p~~~v~W~k~~~~~~~~~~~~~~~~~  602 (772)
T 3v2a_R          550 GPEITLQPD-MQPTEQESVSLWCTADR--------------------------STFENLTWYKLGPQPLPIHVGELPTPV  602 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceeeccCC-cccccCCceEEEEeccC--------------------------CCCCCcEEEEcCCcccccccCcccccc
Confidence            444444443 45779999999999853                          3456799999876543211111000  


Q ss_pred             --------cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcc--eeeEEEE--EcCCcccccccCCceeecC
Q psy7941          86 --------NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTK--QMAFLEV--VIPPDISSEETSGDMMVPE  152 (238)
Q Consensus        86 --------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~--~~~~l~v--~~~~~~~~~~~~~~~~~~~  152 (238)
                              ......+........+|.|.+++.+|+|.|+|.+.|. +...  ....+.|  ..+|.+...  .....+.+
T Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~--~~~~~v~~  680 (772)
T 3v2a_R          603 CKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGN--LENQTTSI  680 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecC--CCceEEeC
Confidence                    0000000111112346999999999999999999873 2221  2334444  445555432  34466888


Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....     .......++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.
T Consensus       681 g~~~~l~C~~~g~P~p~v~W~k-~g~~l~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~  753 (772)
T 3v2a_R          681 GESIEVSCTASGNPPPQIMWFK-DNETLVEDS-----GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFI  753 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCEEEEEEeCccCCCeEEEEE-CCeECcCCC-----CeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcce-eEEEEEE
Confidence            9999999999999999999999 444443221     11112235689999999999999999999999955 7789999


Q ss_pred             EEeec
Q psy7941         233 VHCTY  237 (238)
Q Consensus       233 V~~~p  237 (238)
                      |..+|
T Consensus       754 V~~~p  758 (772)
T 3v2a_R          754 IEGAQ  758 (772)
T ss_dssp             -----
T ss_pred             EECCC
Confidence            98876

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.83  E-value=2.6e-19  Score=142.76  Aligned_cols=188  Identities=19%  Similarity=0.257  Sum_probs=117.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ce-ee--eeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TK-AV--LAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~-~~--~~~~-~~~~   84 (238)
                      .+...+..+.+.+|+++.|.|.+......                      ...+.+.|+|++ +. ..  .... ....
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~   60 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDS----------------------SGHSFMHWYQQKPGQPPKLLIYRASNLES   60 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEE----------------------TTEECEEEEEECTTSCCEEEESSSSCBCS
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCccc----------------------CCcceEEEEEECCCCCcEEEEEECcccCC
Confidence            45677888999999999999998532110                      001369999964 21 11  1000 0001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ....|+.... ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+...  .......+|+.+.|.
T Consensus        61 ~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~--~~~~~~~~g~~~~l~  137 (438)
T 1qgc_4           61 GIPDRFSGSG-SRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIF--PPSSEQLTSGGASVV  137 (438)
T ss_dssp             SCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEE--CCCHHHHHTTEEEEE
T ss_pred             CccCcEEEEc-cCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEec--CCChhhccCCceEEE
Confidence            1235666654 345568999999999999999999775432  3345666653   3333221  111123357799999


Q ss_pred             EEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         160 CKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       160 C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.+.+ .|.+ .+.|++ ++..+...    ..............+.|.|..+..+|.|.|+|.|.|..|.
T Consensus       138 C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  206 (438)
T 1qgc_4          138 CFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  206 (438)
T ss_dssp             EEEEEEBSSCEEEEEEE-TTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             EEEccccCCCcEEEEEE-CCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence            99987 7777 999999 55544221    0000000111122347999999999999999999998874

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.83  E-value=1.7e-20  Score=137.37  Aligned_cols=192  Identities=17%  Similarity=0.247  Sum_probs=114.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eeee-ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAIH-EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~~-~~   82 (238)
                      .+.+.. +..+.+.+|+++.|.|.+.+...                        +...+.|+|++.  ...  .... ..
T Consensus        20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~   74 (234)
T 2j6e_L           20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNI------------------------GSNYVYWYQQLPGTAPKLLIYRNNQR   74 (234)
T ss_dssp             CCCCBC-CSCCCBCTTCEEEEEEECCTTTT------------------------TTSCCEEEEECSSSCCEEEEBTTTBC
T ss_pred             ccEEeC-CCcEEeeCCCcEEEEEEecCCCC------------------------CCCeEEEEEecCCCCcEEEEECcccc
Confidence            344445 77888999999999999864211                        011599999642  111  0000 00


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEc----CCcccccccCCceeecCCC
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVI----PPDISSEETSGDMMVPEGG  154 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~  154 (238)
                      ......|+.... ....++|.|.+++.+|+|.|+|.+.+...    ....+.+.|..    +|.+...  ........|+
T Consensus        75 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~--~~~~~~~~g~  151 (234)
T 2j6e_L           75 PSGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLF--PPSSEELQAN  151 (234)
T ss_dssp             CSSSCTTEEEEE-ETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEE--CCCHHHHTTS
T ss_pred             CCCccccEEEEe-cCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCccccc--CCChhHhcCC
Confidence            011235676654 34566999999999999999999977543    11233455532    3333221  1111234578


Q ss_pred             cEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceE
Q psy7941         155 SAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRL  229 (238)
Q Consensus       155 ~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~  229 (238)
                      .+.|.|.+.|. |. +.+.|++ ++..+.....   ............+.|.|..+..+|.|.|+|.|.|..+. ..+++
T Consensus       152 ~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~  229 (234)
T 2j6e_L          152 KATLVCLISDFFPGAVTVAWKA-DGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTV  229 (234)
T ss_dssp             CCCEEECCCBCSSCCCEEEEEE-TTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC-CCEEE
T ss_pred             ceEEEEEEEEEcCCceEEEEEE-CCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc-eEEec
Confidence            99999999884 44 3899999 5554421100   00000000112236888888899999999999998773 34443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.83  E-value=6.3e-19  Score=128.96  Aligned_cols=182  Identities=18%  Similarity=0.255  Sum_probs=107.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeee---eeEe--e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIH---EHVI--T   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~---~~~~--~   85 (238)
                      +..+.+.+|+++.|.|.+.....                        ..+.+.|||+.. .   ......   ....  .
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~   62 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSF------------------------SDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPS   62 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCC------------------------SSCCEEEEEECTTSCCEEEEEECTTCCEEECTT
T ss_pred             CCCEEEeCCCcEEEEEEEccccC------------------------CCceEEEEEeCCCCCeEEEEEEecCCceeeCCc
Confidence            45578999999999999974310                        134699999642 1   111110   0011  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec-CC--C----cceeeEEEEEcC----CcccccccCCceeecCC
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT-NP--M----TKQMAFLEVVIP----PDISSEETSGDMMVPEG  153 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~-~~--~----~~~~~~l~v~~~----~~~~~~~~~~~~~~~~g  153 (238)
                      ..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+ ..  .    ....+.|.|...    |.+.... +. ..+..|
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p~-~~~~~g  140 (232)
T 1dn0_B           63 LKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV-SC-ENSPSD  140 (232)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE-CC-------
T ss_pred             cCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec-cc-cccCCC
Confidence            24688876543 4678999999999999999999973 11  1    123456777652    2222111 11 123467


Q ss_pred             -CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEe-ecCCC-CCcceEEEeeceEEEEEeec--CCCeEEEEEeeeCCCC
Q psy7941         154 -GSAKLVCKAKG-YPTP-KITWRREDNKEIIV-RSNPP-SSQKVFSVESEVLSLTKVTR--SEMGAYQCIAANGVPP  223 (238)
Q Consensus       154 -~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~n~~g~  223 (238)
                       +.+.|.|.+.+ +|.| .+.|++.++..+.. ..... ...... ...+.|.|.....  +|.|.|+|.|.|..+.
T Consensus       141 ~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          141 TSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEE-EEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcE-EEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence             89999999988 4877 99999944443321 00000 001111 1234677777665  7899999999999883

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.83  E-value=7.5e-21  Score=139.20  Aligned_cols=185  Identities=18%  Similarity=0.251  Sum_probs=95.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeee----ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIH----EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~----~~   82 (238)
                      .+.+...+..+.+.+|+++.|.|.+...                          +.+.+.|+|++. .......    ..
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~~~~~~~~~~~~~~~~~~~   76 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTD--------------------------IDDDMNWYQQKPGEPPRLLISDGNTL   76 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEE--------------------------ESSCEEEEEECTTSCCEEEECTTSCB
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCc--------------------------CCCeEEEEEECCCCCcEEEEEcCCcc
Confidence            4556677888899999999999998642                          234599998642 1110000    00


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc---CCcccccccCCceeecCCCcEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI---PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ......|+.... ....++|.|.+++.+|+|.|+|.+.+....  ...+.+.|..   +|.+...  ........|+.+.
T Consensus        77 ~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~--~~~~~~~~g~~v~  153 (233)
T 3bqu_C           77 RPGVPSRFSSSG-YGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIF--PPSSEQLTSGGAS  153 (233)
T ss_dssp             CTTSCTTCCCCE-EEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEE--CCCHHHHHTTEEE
T ss_pred             CCCCCccEEeec-cCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEe--CCCHHhhcCCceE
Confidence            001123443322 223448999999999999999999764321  2223456654   3333221  1111233588999


Q ss_pred             EEEEEccc-cCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         158 LVCKAKGY-PTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       158 l~C~~~~~-p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.|.+.|. |.+ .+.|++ ++..+...    ..............+.|.|.....+|.|.|+|.|.|...
T Consensus       154 L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          154 VVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEEEEEEEBSSCEEEEEEE-C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EEEEEccccCCceEEEEEE-CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            99999884 444 799999 44433221    000000111112234688888888999999999999765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.82  E-value=5.4e-20  Score=138.81  Aligned_cols=171  Identities=11%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      +.+.+|+++.|.|.+.+                           |.+.+.|++.+.......   ......         
T Consensus       105 ~~v~~G~~v~l~C~~~~---------------------------p~~~v~w~~~~~~~~~~~---~~~~~~---------  145 (289)
T 3mjg_X          105 IFLTEITEITIPCRVTD---------------------------PQLVVTLHEKKGDVALPV---PYDHQR---------  145 (289)
T ss_dssp             EEESSCCCEEECCCBSC---------------------------TTSCEEEEESSCCSCCCC---CEETTT---------
T ss_pred             EEeecCCeEEEEeEcCC---------------------------CCceEEEEeCCCCCccce---eecCCc---------
Confidence            67889999999999852                           345688888642211100   000000         


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEc--CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEE
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVI--PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR  173 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~  173 (238)
                         .+.    ...|+|.|+|.+.+.....  ....+.|..  +|.+...  +....+.+|+.+.|.|.+.+.|.|.+.|+
T Consensus       146 ---~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~v~W~  216 (289)
T 3mjg_X          146 ---GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN--AVQTVVRQGENITLMCIVIGNEVVNFEWT  216 (289)
T ss_dssp             ---EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEE--ESCSEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred             ---Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEe--CCcceeEcCCCEEEEEEECCCCCcceEEE
Confidence               111    3579999999997654322  233455554  3444332  23356889999999999999999999999


Q ss_pred             eCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         174 REDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +++......... ..............|.|.++..+|.|.|+|.|.|..|. .+.++.|.|...|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~~  280 (289)
T 3mjg_X          217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND-HQDEKAINITVVE  280 (289)
T ss_dssp             CTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT-EEEEEEEEEEEEC
T ss_pred             cCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC-ceeEEEEEEEEEe
Confidence            743221100000 00000000123457999999999999999999999994 4888888888765

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.82  E-value=1.1e-19  Score=132.56  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=108.3

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee---eeEe--e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH---EHVI--T   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~---~~~~--~   85 (238)
                      +..+.+.+|+++.|.|.+......                      ...+.+.|+|+.. . .  +....   ....  .
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~   64 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIR----------------------TSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPS   64 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHH----------------------HHCCEEEEEEEETTCCCEEEEEECTTSCEEECTT
T ss_pred             CCceeecCCCeEEEEEEEeCcccC----------------------CCceeEEEEEECCCCCeEEEEEEecCCceeeCcc
Confidence            566789999999999999743210                      0015699998531 1 1  11110   0001  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----------cceeeEEEEEc----CCcccccccCCceee
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----------TKQMAFLEVVI----PPDISSEETSGDMMV  150 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~~~~~~l~v~~----~~~~~~~~~~~~~~~  150 (238)
                      ..+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...          ....+.|.|..    +|.+...  .....+
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~--~~~~~~  142 (228)
T 3bae_H           65 LESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPL--APVCGD  142 (228)
T ss_dssp             TGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEE--CC----
T ss_pred             cCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEe--cccccc
Confidence            24678776543 3567999999999999999999976431          11235677763    2322221  111235


Q ss_pred             cCCCcEEEEEEEccc-cCC-eEEEEeCCCee-eEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKE-IIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|+.+.|.|.+.+. |.| .+.|++++... ......... ... ....+.|.|..+..++ |.|+|.|.|..|
T Consensus       143 ~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~-~~~-~~~~s~L~i~~~~~d~-g~YtC~~~n~~~  214 (228)
T 3bae_H          143 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQ-SDL-YTLSSSVTVTSSTWPS-ESITCNVAHPAS  214 (228)
T ss_dssp             -CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEE-TTE-EEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             cCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeC-CCc-EEEEEEEEEEhhhcCC-CcEEEEEEECCC
Confidence            679999999999884 877 99999954321 010000000 011 1123468887777755 999999999987

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.82  E-value=9.2e-19  Score=131.60  Aligned_cols=186  Identities=17%  Similarity=0.268  Sum_probs=115.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee--
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE--   81 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~--   81 (238)
                      .+.+...+..+.+.+|+++.|.|.+.+.                          +.+.+.|+|++. . .  ......  
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~   77 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDF--------------------------QATTMFWYRQFPKQSLMLMATSNEGS   77 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSS--------------------------CEEEEEEEEECSSSCCEEEEEEESSS
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCC--------------------------CCCeEEEEEeCCCCCeEEEEEEecCC
Confidence            5677788899999999999999998532                          245699999642 1 1  111100  


Q ss_pred             -eEe---ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-------CcceeeEEEEEc------CCccccccc
Q psy7941          82 -HVI---TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-------MTKQMAFLEVVI------PPDISSEET  144 (238)
Q Consensus        82 -~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v~~------~~~~~~~~~  144 (238)
                       ...   ...+|+.+.......++|.|.+++.+|+|.|+|.+.+..       .....+.|.|..      +|.+... .
T Consensus        78 ~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~  156 (279)
T 2wbj_D           78 KATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVF-E  156 (279)
T ss_dssp             CCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEE-E
T ss_pred             cceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEE-C
Confidence             000   124688877655667899999999999999999997731       012334677764      2333221 1


Q ss_pred             CCceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecCC-CeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRSE-MGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d-~G~  212 (238)
                      +....+..|+.+.|.|.+.|. |. +.+.|++ ++..+.......         ..... ....+.|.|......| .|.
T Consensus       157 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~~~~  234 (279)
T 2wbj_D          157 PSEAEISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNH  234 (279)
T ss_dssp             CCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE-TTEECCTTEEECSSCEESSTTSTTCC-EEEEEEEECCSTTTTCTTCE
T ss_pred             CCcccccCCCceEEEEEEeeEcCCCcEEEEEE-CCEECCCCcccccccccccccCCCCc-EEEEEEEEEChHHhccCCCE
Confidence            111223468899999999885 54 6999999 555442111000         01111 1122246666555544 568


Q ss_pred             EEEEeeeCCC
Q psy7941         213 YQCIAANGVP  222 (238)
Q Consensus       213 y~C~~~n~~g  222 (238)
                      |+|.|.|...
T Consensus       235 YtC~v~n~~~  244 (279)
T 2wbj_D          235 FRCQVQFYGL  244 (279)
T ss_dssp             EEEEEEECCB
T ss_pred             EEEEEEeCCC
Confidence            9999999865

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.81  E-value=3.5e-19  Score=137.77  Aligned_cols=181  Identities=18%  Similarity=0.292  Sum_probs=113.4

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeee--eee------eeE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVL--AIH------EHV   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~--~~~------~~~   83 (238)
                      .+..+.+.+|+++.|.|.+.+..                        .+.+.+.|+|+.  .....  ...      ...
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~   61 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYT------------------------FTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYN   61 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSC------------------------TTSSCEEEEEECSSSCEEEEEEEETTTTEEEEC
T ss_pred             CCCCeEEeCCCcEEEEEEcCCcc------------------------ccccEEEEEEECCCCCcEEEEEEecCCCceEEC
Confidence            45567899999999999997431                        124569999973  22111  000      000


Q ss_pred             eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc----CCcccccccCCceeecCCCcEE
Q psy7941          84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI----PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+... ....+.|.|..    +|.+...  .....+..|+.+.
T Consensus        62 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g~~v~  139 (344)
T 1za6_B           62 ERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPL--APSSKSTSGGTAA  139 (344)
T ss_dssp             TTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEE--CCSCTTTSSSEEE
T ss_pred             cccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEc--cccccccCCCcEE
Confidence            1124677776543 3567999999999999999999977432 23345677763    2222211  1123357899999


Q ss_pred             EEEEEccc-cC-CeEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.|.+.|. |. +.+.|+++ +..+.......  ..... ....+.|.|..+..+| |.|+|.|.|..+.
T Consensus       140 L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  206 (344)
T 1za6_B          140 LGCLVKDYFPEPVTVSWNSG-ALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPSN  206 (344)
T ss_dssp             EEEEEEEEBSSCCCEEETTT-TBCTTEEECCCEECTTSC-EEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred             EEEEEeeEECCCeEEEEecC-CccCceeECCCeECCCCC-EEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            99999886 65 69999994 43321110000  00111 1123368888888878 9999999998873

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.81  E-value=3.2e-18  Score=137.97  Aligned_cols=190  Identities=18%  Similarity=0.307  Sum_probs=117.1

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee------e
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH------E   81 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~------~   81 (238)
                      +..+..+.+.+|+++.|.|.+....                        .+.+.+.|||+..  ..  +....      .
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~   60 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYS------------------------FTSYGLHWVRQAPGQRLEWMGWISAGTGNTK   60 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCC------------------------CCCceEEEEEeCCCCCcEEEEEEecCCCcee
Confidence            4567788999999999999986421                        0134699999642  11  11100      0


Q ss_pred             eEeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc----CCcccccccCCcee
Q psy7941          82 HVITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI----PPDISSEETSGDMM  149 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~~~~~~~~~~~~~~  149 (238)
                      ......+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...       ....+.|.|..    +|.+.... .  ..
T Consensus        61 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~--~~  137 (475)
T 1iga_A           61 YSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-L--CS  137 (475)
T ss_pred             cCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-c--cc
Confidence            001124677766543 3567999999999999999999976532       12344666663    22222211 1  12


Q ss_pred             ecCCCcEEEEEEEccc-cC-C-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         150 VPEGGSAKLVCKAKGY-PT-P-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~-p~-~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.+|+.+.|.|.+.|. |. | .+.|++++ ..........   ..... ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~-~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  215 (475)
T 1iga_A          138 TQPDGNVVIACLVQGFFPQEPLSVTWSESG-QGVTARNFPPSQDASGDL-YTTSSQLTLPATQCLAGKSVTCHVKHYTNP  215 (475)
T ss_pred             cCCCCeEEEEEEEeeecCCCceEEEEcCCC-cccceEeCCceecCCCCc-EEEEEEEEechhHcCCCceEEEEEEECCCC
Confidence            3689999999999985 66 5 99999844 2211111000   00111 112235888888888999999999999874


Q ss_pred             CccceEE
Q psy7941         224 TVSKRLM  230 (238)
Q Consensus       224 ~~~~~~~  230 (238)
                      .....+.
T Consensus       216 ~~~~~v~  222 (475)
T 1iga_A          216 SQDVTVP  222 (475)
T ss_pred             ceeeeEe
Confidence            3344444

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.81  E-value=3.6e-19  Score=128.04  Aligned_cols=180  Identities=13%  Similarity=0.224  Sum_probs=104.9

Q ss_pred             eeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCc
Q psy7941          11 FLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNA   88 (238)
Q Consensus        11 ~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~   88 (238)
                      ++.+|.... +.+|+++.|.|.+.+....                      .+.+.+.|+|++..+...... .....++
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~----------------------p~~~~v~W~k~~~~~~~~~~~~~~~~~~~   62 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKD----------------------DPEVQFSWFVDDVEVHTAQTKPREEQFNS   62 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTT----------------------CCCCEEEEEETTEEECCCEEECCCEETTT
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccC----------------------CCceEEEEEECCccccccccCCCcCcCCC
Confidence            344555444 7899999999999743100                      013479999988554321110 0011223


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEE----EEEcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFL----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                      ++...      .+|.|.+++.+|+|.|+|.+.+.... .....+    .+..+|.+.......  ....|+.+.|.|.+.
T Consensus        63 ~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~L~C~~~  134 (207)
T 2vol_A           63 TFRSV------SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPK--EQMAKDKVSLTCMIT  134 (207)
T ss_dssp             EEEEE------EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCT--GGGSSSEEEEEEEEE
T ss_pred             cEEEE------EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCH--HHhcCCceEEEEEEe
Confidence            34332      28999999999999999999875442 122233    233455543322221  123588999999999


Q ss_pred             c-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         164 G-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       164 ~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      | +|.+ .+.|++ ++..+.......   ..... ....+.|.+.....+|.|.|+|.|.|...
T Consensus       135 g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          135 DFFPEDITVEWES-NGQPAENYKNTQPIMDTDGS-YFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEBSSCCEEEEEE-TTEECSCEEECCCEECTTSC-EEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             eEECCCCEEEEEE-CCEeccCcccCCceECCCCC-EEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            8 5553 899999 554432111000   00001 11122455555556789999999999875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.81  E-value=2.5e-19  Score=129.87  Aligned_cols=184  Identities=15%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             cccceeccCceeE--EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eE
Q psy7941           7 FEPDFLYPLENVT--IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HV   83 (238)
Q Consensus         7 ~~p~~~~~~~~~~--v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~   83 (238)
                      .+|.+...+....  +.+|+++.|.|.+.+...                      +.+.+.+.|+|++..+...... ..
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~----------------------~p~~~~v~W~k~~~~~~~~~~~~~~   65 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSE----------------------DDPDVQISWFVNNVEVHTAQTQTHR   65 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECT----------------------TSCCEEEEEEETTEEECCCEEEEEE
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCcc----------------------CCCceEEEEEECCccccCccccccc
Confidence            3455544444444  789999999999974310                      0012579999988654321111 11


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEE----EEEcCCcccccccCCceeecCCCcEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFL----EVVIPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ...++++...      .+|.|.+++.+|+|.|+|.+.+..... ....+    .+..+|.+......  .....|+.+.|
T Consensus        66 ~~~~~~~~~~------~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~--~~~~~g~~~~L  137 (218)
T 2rgs_A           66 EDYNSTIRVV------STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP--AEQLSRKDVSL  137 (218)
T ss_dssp             ETTTTEEEEE------EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC--GGGTTSSEEEE
T ss_pred             ccCCCeEEEE------EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC--hHHhcCCceEE
Confidence            1123344332      289999999999999999998764322 12222    22344544332211  11235899999


Q ss_pred             EEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         159 VCKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       159 ~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.+.| +|.+ .+.|++ ++..+.......   ..... ......|.+.....+|.|.|+|.|.|...
T Consensus       138 ~C~~~g~~P~~~~v~W~k-~g~~~~~~~~~~~~~~~~gt-~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          138 TCLVVGFNPGDISVEWTS-NGHTEENYKDTAPVLDSDGS-YFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             EEEEEEEBSSCCEEEEEE-TTEEECCEEECCCEECTTSC-EEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             EEEEEeeeCCCcEEEEEE-CCEeccCceecccEECCCCC-EEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            999998 6766 999999 454432111000   00000 11112344444445568999999999875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.81  E-value=1.2e-18  Score=129.66  Aligned_cols=181  Identities=19%  Similarity=0.266  Sum_probs=111.4

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-ee--eeee----eeE-
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-AV--LAIH----EHV-   83 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~~--~~~~----~~~-   83 (238)
                      ..+..+.+.+|++++|.|.+.....                        ..+.+.|+|+.. . ..  ....    ... 
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~   66 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSF------------------------TSYWMNWVKQRPGRGLEWIGRIDPSDNETHY   66 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEE
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCccc------------------------CCceEEEEEeCCCCCcEEEEEEecCCCceee
Confidence            3466788999999999999974210                        034699999742 1 11  1100    000 


Q ss_pred             -eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC----cceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941          84 -ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM----TKQMAFLEVVI----PPDISSEETSGDMMVPEG  153 (238)
Q Consensus        84 -~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g  153 (238)
                       ....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...    ....+.|.|..    +|.+.... + ...+..|
T Consensus        67 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p-~~~v~~g  144 (261)
T 2xqy_G           67 NQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA-P-VCGDTTG  144 (261)
T ss_dssp             CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC-C-CCC--CC
T ss_pred             CCccCCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC-C-CccccCC
Confidence             1124678776542 3567999999999999999999987431    12335677764    23332211 1 1235679


Q ss_pred             CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +.+.|.|.+.+ +|.+ .+.|++++. .+........ ... .....+.|.|.....+| |.|+|.|.|...
T Consensus       145 ~~v~L~C~~~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          145 SSVTLGCLVKGYFPEPVTLTWNSGSL-SSGVHTFPAVLQSD-LYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEGGGTC-CTTEEECCCEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CcEEEEEEEEeEeCCCCEEEEecCCC-cCceEecCceecCC-cEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            99999999988 5777 999999543 3211110000 001 11223468888777777 999999999764

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.81  E-value=1.3e-18  Score=122.30  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEe--CCceeeeeee-eeEeecCccEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK--ADTKAVLAIH-EHVITNNARLS   91 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~--~~~~~~~~~~-~~~~~~~~~~~   91 (238)
                      .+.+.+..|+++.|.|....                        .+.+.+.+.|++  ++..+..... ...+..++|+.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~------------------------~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~   61 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQ------------------------MSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK   61 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCC------------------------CCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE
T ss_pred             ccEEEEecCCCEEEeCCccc------------------------ccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE
Confidence            56788999999999994311                        112345799999  6654321110 00112356666


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      +..+.    +|.|.+++.+|+|.|+|.+.+....   ...+.|.|..+...+      .+.. .+..+.|.|.+.+.|.+
T Consensus        62 ~~~ng----sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P------~i~~-~~~~v~L~C~~~~~p~~  130 (182)
T 1hnf_A           62 LFKNG----TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKP------KISW-TCINTTLTCEVMNGTDP  130 (182)
T ss_dssp             ECTTS----CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCC------EEEE-ETTTTEEEEECSSCSSC
T ss_pred             ECCCC----CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCC------EEEE-ccCcEEEEeEccCCCCC
Confidence            65332    8999999999999999999775332   234456776432111      1111 23478999999998889


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .+.|++ ++..+..             ....+.+. ...+|.|.|+|.|.|..|..
T Consensus       131 ~~~W~~-~g~~l~~-------------~~~~i~~~-~~~~d~G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          131 ELNLYQ-DGKHLKL-------------SQRVITHK-WTTSLSAKFKCTAGNKVSKE  171 (182)
T ss_dssp             EEEEEE-SSCEEEE-------------ESSCEEEE-CCSCEEEEEEEEEECSSCEE
T ss_pred             EEEEEE-CCEECCC-------------CCcEEEEe-cccCCCcEEEEEEEeCCCCc
Confidence            999999 4444411             11123322 24689999999999999843

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.81  E-value=7.7e-19  Score=128.47  Aligned_cols=181  Identities=18%  Similarity=0.328  Sum_probs=104.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee--e------e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH--E------H   82 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~--~------~   82 (238)
                      +..+.+.+|+++.|.|.+.....                      ..+...+.||+.....    .....  .      .
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~----------------------~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~   64 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSL----------------------STSGMSVSWIRQPPGKALEWLALIDWDDDTYYITY   64 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGG----------------------GCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECC
T ss_pred             CCCEEECCCCcEEEEEEEeCccc----------------------ccceeEeEEEEECCCCCcEEEEEEECCCCcccccc
Confidence            44567899999999999964210                      0112234999854211    11110  0      0


Q ss_pred             EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---------CcceeeEEEEEc----CCcccccccCCce
Q psy7941          83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---------MTKQMAFLEVVI----PPDISSEETSGDM  148 (238)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~  148 (238)
                      .....+|+.+.... .+.++|.|.+++.+|+|.|.|.+.+..         .....+.+.|..    +|.+..  .....
T Consensus        65 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~--~~~~~  142 (232)
T 3qhz_H           65 SSSLKTRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFP--LAPSS  142 (232)
T ss_dssp             CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEE--ECC--
T ss_pred             CccccCceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEE--ecccc
Confidence            01123688877643 477899999999999999999997542         122334566652    222221  12223


Q ss_pred             eecCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         149 MVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..|+.+.|.|.+.+. |.+ .+.|++++ ..+......  ...... ....+.|.|......| |.|+|.|.|..+
T Consensus       143 ~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-g~ytC~v~~~~~  217 (232)
T 3qhz_H          143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS  217 (232)
T ss_dssp             -----CEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGGGT-CCCEEEEEEGGG
T ss_pred             cccCCCcEEEEEEEeeEeCCCeEEEEEECC-EecceeeccceeCCCCC-EEEEEEEEEchhhcCC-CEEEEEEEeCCC
Confidence            45568999999999884 423 68899844 321111100  000111 1222368888888888 999999999886

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.81  E-value=1.9e-18  Score=124.92  Aligned_cols=177  Identities=18%  Similarity=0.308  Sum_probs=106.0

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee---eEe--e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE---HVI--T   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~---~~~--~   85 (238)
                      +..+.+.+|+++.|.|.+.....                        +.+.+.|+|+..  ..  ......   ...  .
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~   62 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPL------------------------TTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSA   62 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCT------------------------TSCCEEEEEECTTSCCEEEEEECTTCCEECCTT
T ss_pred             CCCeeecCCCcEEEEEEECCCcC------------------------CCCeEEEEEECCCCCcEEEEEEcCCCCcEECCc
Confidence            56678999999999999964210                        135699998642  11  111100   000  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEc----CCcccccccCCceeecCCCcE
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~  156 (238)
                      ..+|+.+.... ...++|.|.+++.+|+|.|.|.+.+..    .....+.|.|..    +|.+....  ....+..|+.+
T Consensus        63 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~~~~~g~~v  140 (215)
T 1c5d_H           63 LKSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLA--PGCGDTTSSTV  140 (215)
T ss_dssp             TGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEEC--CCSSCCCCSSE
T ss_pred             ccCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEecc--CChhhccCCcE
Confidence            24678776543 357799999999999999999997653    122345677763    23332211  11234678999


Q ss_pred             EEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         157 KLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       157 ~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.|.+.|. |.| .+.|++++. .......... ...... ..+.|.  ....+| |.|+|.|.|..+
T Consensus       141 ~L~C~~~g~~P~p~~v~W~~~g~-~~~~~~~~~~~~~g~~~-~~s~L~--~~~~~~-g~ytC~v~n~~~  204 (215)
T 1c5d_H          141 TLGCLVKGYFPEPVTVTWNSGAL-SSDVHTFPAVLQSGLYT-LTSSVT--SSTWPS-QTVTCNVAHPAS  204 (215)
T ss_dssp             EEEEEEEEEBSSCCEEEEGGGTT-CCSCCBCCCEEETTEEE-EEEEEE--ESSTTT-SCCEEEEEEGGG
T ss_pred             EEEEEEeeeEcCCcEEEEccCCc-cCceEecCcccCCCCEE-EEEEEe--cccCCC-CeEEEEEEeCCC
Confidence            999999885 888 999999543 2211100000 000111 111232  333355 999999999887

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.81  E-value=1.1e-19  Score=154.42  Aligned_cols=186  Identities=20%  Similarity=0.337  Sum_probs=58.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-e--cCccE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-T--NNARL   90 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~--~~~~~   90 (238)
                      ++..+.+.+|+++.|.|.+....                        .+.+.+.|++++............ .  .....
T Consensus       230 ~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  285 (772)
T 3v2a_R          230 PSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM  285 (772)
T ss_dssp             CCSCEEEETTCCEEEEEEEEECT------------------------TCCCEEEEECC--------CEEEEC-----CCC
T ss_pred             CCCceEEecCCcEEEEEEEecCC------------------------CCceeEEEecCCccCCCceeeeccccccccccc
Confidence            34457899999999999997421                        234579999987653221110000 0  00011


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccc-cCCceeecCCCcEEEEEEEccccCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEE-TSGDMMVPEGGSAKLVCKAKGYPTP  168 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~  168 (238)
                      ..     ...+|.|.+++.+|+|.|+|.+.+... ....+.+.|..+|.+.... ......+.+|+.+.|.|.+.++|.+
T Consensus       286 ~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~  360 (772)
T 3v2a_R          286 KK-----FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP  360 (772)
T ss_dssp             EE-----EEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------------------
T ss_pred             eE-----EEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC
Confidence            11     223899999999999999999987533 3455668888777654332 2234567889999999999999999


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC-ccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT-VSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~-~~~~~~l~V~~~p  237 (238)
                      .+.|++ ++..+....        .......|.|.++..+|.|.|+|.|.|..|.. .+..+.|.|..+|
T Consensus       361 ~v~W~~-~g~~l~~~~--------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P  421 (772)
T 3v2a_R          361 EIKWYK-NGIPLESNH--------TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP  421 (772)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             eEEEEE-CCEeCCCCc--------eEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCC
Confidence            999999 554443211        11134679999999999999999999998743 2556777777766

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.80  E-value=4.2e-20  Score=141.10  Aligned_cols=171  Identities=20%  Similarity=0.326  Sum_probs=115.0

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ......+.+.+|+++.|.|.+....                         +.+.+.|+|++......     .....++.
T Consensus         9 ~~~~~~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~k~~~~~~~~-----~~~~~~~~   58 (315)
T 1itb_B            9 REEKIILVSSANEIDVRPCPLNPNE-------------------------HKGTITWYKDDSKTPVS-----TEQASRIH   58 (315)
T ss_dssp             BCCCCCCEEETTSCCCCBCCCCSCC-------------------------CSSCCCEECTTSCSCSC-----CCTTSSSE
T ss_pred             hcCceEEEEcCCCcEEEEeeccCcC-------------------------CCceEEEEeCCCcCccc-----cccCCcEe
Confidence            3345577899999999999985321                         14579999987543211     11233443


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE-cCCcccccc-cCCceeecCCCcEEEEEEE------
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV-IPPDISSEE-TSGDMMVPEGGSAKLVCKA------  162 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~-~~~~~~~~~-~~~~~~~~~g~~~~l~C~~------  162 (238)
                      ....     +|.|.+++.+|+|.|+|.+.+... ......+.+. .+|.+.... ......+..|+.+.|.|.+      
T Consensus        59 ~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~  133 (315)
T 1itb_B           59 QHKE-----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN  133 (315)
T ss_dssp             ECSS-----BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCT
T ss_pred             ccCC-----eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEeccccccc
Confidence            3322     899999999999999999976532 2222333333 233332221 1123457889999999998      


Q ss_pred             ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEee-eCCCCC
Q psy7941         163 KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA-NGVPPT  224 (238)
Q Consensus       163 ~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-n~~g~~  224 (238)
                      .|.|.+.+.|++ ++..+...      .......+..|.|.++..+|.|.|+|.|. |..|..
T Consensus       134 ~g~p~~~i~W~k-~~~~l~~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          134 ENNELPKLQWYK-DCKPLLLD------NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             TTTCCCCCEEEE-TTEECCCC------SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCCCCCEEEEEE-CCEECCCc------cceEeecCceEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            789999999999 55544321      11123455689999999999999999999 788844

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.80  E-value=2.2e-18  Score=126.54  Aligned_cols=181  Identities=15%  Similarity=0.257  Sum_probs=109.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeee--eEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHE--HVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~--~~~   84 (238)
                      +...+..+.+.+|+++.|.|.+..                           +.+.+.|+|+.. . .  ......  ...
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~   54 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQTN---------------------------NHNNMYWYRQDTGHGLRLIHYSYGAGSTE   54 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS---------------------------CCSEEEEEEECTTSCEEEEEEEEETTEEE
T ss_pred             cccCCCeeEEeCCCcEEEEEEeCC---------------------------CCceEEEEEECCCCCEEEEEEEeCCCccc
Confidence            456788899999999999999841                           135699999642 1 1  111100  001


Q ss_pred             --ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC------cceeeEEEEEc------CCcccccccCCceee
Q psy7941          85 --TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM------TKQMAFLEVVI------PPDISSEETSGDMMV  150 (238)
Q Consensus        85 --~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~------~~~~~~~~~~~~~~~  150 (238)
                        ...+|+.+.......++|.|.+++.+|+|.|+|.+.+...      ....+.|.|..      +|.+... .+....+
T Consensus        55 ~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~~  133 (238)
T 1bec_A           55 KGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLF-EPSKAEI  133 (238)
T ss_dssp             ECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEE-CCCSTTC
T ss_pred             CCCccceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEE-CCChHHc
Confidence              1246777765445677999999999999999999976521      12334577765      2333221 1222335


Q ss_pred             cCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecCCCCCcceEEEeec------eEEEEEeecCC-CeEEEEEeeeCC
Q psy7941         151 PEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSNPPSSQKVFSVESE------VLSLTKVTRSE-MGAYQCIAANGV  221 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d-~G~y~C~~~n~~  221 (238)
                      ..|+.+.|.|.+.|. |.+ .+.|++ ++..+......  ........++      .|.|......| .|.|+|.|.|..
T Consensus       134 ~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~~~~~~~~--~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          134 ANKQKATLVCLARGFFPDHVELSWWV-NGKEVHSGVST--DPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             SSSCSCSEEEEEEEEBSCCEEEEEEE-TTEEECTTEEE--CSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             ccCCceEEEEEEeeEeCCCcEEEEEE-CCEECCCceec--ccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            578999999999984 655 999999 55544221100  0000111122      23333333334 568999999975


Q ss_pred             C
Q psy7941         222 P  222 (238)
Q Consensus       222 g  222 (238)
                      .
T Consensus       211 l  211 (238)
T 1bec_A          211 L  211 (238)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.80  E-value=1.5e-18  Score=138.26  Aligned_cols=181  Identities=17%  Similarity=0.275  Sum_probs=109.9

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeee-e--eeeEeecCccEEEEEcC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLA-I--HEHVITNNARLSVTHND   96 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~   96 (238)
                      ..|+++.|.|.+.+.                         .|.+ .+.|++++..+... .  .......++.+....  
T Consensus       129 ~~g~~~~l~C~~~g~-------------------------~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~--  181 (438)
T 1qgc_4          129 LTSGGASVVCFLNNF-------------------------YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS--  181 (438)
T ss_dssp             HHTTEEEEEEEEEEE-------------------------BSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEE--
T ss_pred             ccCCceEEEEEEccc-------------------------cCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEE--
Confidence            458899999998631                         2344 79999977654322 1  111111233343332  


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcC-CcccccccCCceeecCCCcEEEEEEEcccc--CCeEEEE
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIP-PDISSEETSGDMMVPEGGSAKLVCKAKGYP--TPKITWR  173 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~  173 (238)
                          .|.|.+++.+|+|.|+|.+.+..... ...+.+... +.+.. ..+....+.+|+.+.|.|.+.|.|  .+.+.|+
T Consensus       182 ----~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~  255 (438)
T 1qgc_4          182 ----TLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVML-VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWV  255 (438)
T ss_dssp             ----EEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEE-EEECCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred             ----EEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEE-ecCCceEEecCCcEEEEEEEcccccCCcEEEEE
Confidence                89999999999999999998764432 233344322 11111 123456788999999999999977  6799999


Q ss_pred             eCC-CeeeEee--cC---------CCCCcceEEEe-----eceEEEEEeecCCCeEEEEEeeeCCCC----CccceEEEE
Q psy7941         174 RED-NKEIIVR--SN---------PPSSQKVFSVE-----SEVLSLTKVTRSEMGAYQCIAANGVPP----TVSKRLMLH  232 (238)
Q Consensus       174 ~~~-~~~~~~~--~~---------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~y~C~~~n~~g~----~~~~~~~l~  232 (238)
                      ++. +..+...  ..         ...........     ...|.|.++..+|+|.|+|.|.|..+.    .......|.
T Consensus       256 k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~  335 (438)
T 1qgc_4          256 RQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVT  335 (438)
T ss_dssp             EEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEE
T ss_pred             ECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEE
Confidence            852 3222110  00         00011221111     237999999999999999999985431    122344566


Q ss_pred             EE
Q psy7941         233 VH  234 (238)
Q Consensus       233 V~  234 (238)
                      |.
T Consensus       336 V~  337 (438)
T 1qgc_4          336 VS  337 (438)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.80  E-value=9.2e-19  Score=128.66  Aligned_cols=182  Identities=18%  Similarity=0.277  Sum_probs=107.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-------e-
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-------E-   81 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-------~-   81 (238)
                      .+..+.+.+|+++.|.|.+......                      .....+.||+.....    .....       . 
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~   63 (239)
T 3tv3_H            6 ESGPTLVEASETLSLTCAVSGDSTA----------------------ACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRG   63 (239)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTT----------------------SSSCEEEEEEECTTSCCEEEEEEECCCCTTSSC
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccc----------------------ccceEEEEEEECCCCCcEEEEEEecccccccCC
Confidence            4556789999999999999742210                      002369999853211    11111       0 


Q ss_pred             -eEe--ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcc
Q psy7941          82 -HVI--TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDI  139 (238)
Q Consensus        82 -~~~--~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~  139 (238)
                       ...  ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...              ....+.+.|..    +|.+
T Consensus        64 ~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v  143 (239)
T 3tv3_H           64 WTYHNPSLKSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSV  143 (239)
T ss_dssp             EEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEE
T ss_pred             ceecCccccCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEE
Confidence             000  124688876543 4677999999999999999999965310              11233456642    2222


Q ss_pred             cccccCCceeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEE
Q psy7941         140 SSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       140 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      ..  ......+..|+.+.|.|.+.+ +|.+ .+.|++++ ..+......  ...... ....+.|.|.....+| |.|+|
T Consensus       144 ~~--~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC  218 (239)
T 3tv3_H          144 FP--LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYIC  218 (239)
T ss_dssp             EE--ECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEE
T ss_pred             EE--ECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECC-ccCceEecCceECCCCC-EEEEEEEEEchhhcCC-CEEEE
Confidence            21  122233456899999999988 5645 58999844 321111100  000111 1222367788777788 99999


Q ss_pred             EeeeCCC
Q psy7941         216 IAANGVP  222 (238)
Q Consensus       216 ~~~n~~g  222 (238)
                      .|.|..+
T Consensus       219 ~v~h~~~  225 (239)
T 3tv3_H          219 NVNHKPS  225 (239)
T ss_dssp             EEEEGGG
T ss_pred             EEEECCC
Confidence            9999876

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.80  E-value=1.1e-18  Score=129.44  Aligned_cols=179  Identities=21%  Similarity=0.348  Sum_probs=97.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee----eeEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH----EHVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~----~~~~--   84 (238)
                      +..+.+.+|++++|.|.+.....                        ..+.+.|+|... . .  +....    ....  
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~   62 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTF------------------------SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYAD   62 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCG------------------------GGCCEEEEEECTTSCEEEEEEECSSSCCEEECG
T ss_pred             cCCEEEcCCCcEEEEEEeccccC------------------------CCceEEEEEECCCCCeEEEEEEecCCCceecCc
Confidence            45678999999999999974210                        034699999642 1 1  11110    0011  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcccccccC
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDISSEETS  145 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~~~~~~~  145 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...              ....+.|.|..    +|.+....  
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~--  140 (257)
T 3bn9_D           63 SVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLA--  140 (257)
T ss_dssp             GGTTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCC--
T ss_pred             ccCCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEec--
Confidence            124688776543 4677999999999999999999976532              11234677764    23332211  


Q ss_pred             CceeecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ....+..|+.+.|.|.+.+ +|.| .+.|++++. .+.......  ..... ....+.|.|.....+| |.|+|.|.|..
T Consensus       141 p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~-~~~~~~~~~~~~~~g~-y~~~s~L~I~~~~~~~-g~YtC~v~n~~  217 (257)
T 3bn9_D          141 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL-TSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKP  217 (257)
T ss_dssp             C-----------CCCEEEEEBSSCCEEEETTTTC-CSSCEECCCEECTTSC-EEEEEECCCC--------CEEEEEEEGG
T ss_pred             CcccccCCCcEEEEEEEeeEECCCcEEEEeeCCC-cCCcEecCCeEcCCCC-EEEEEEEEEcccccCC-CeEEEEEEecC
Confidence            1123467899999999988 4877 999999543 321110000  00011 1123357777777777 99999999965


Q ss_pred             C
Q psy7941         222 P  222 (238)
Q Consensus       222 g  222 (238)
                      .
T Consensus       218 ~  218 (257)
T 3bn9_D          218 S  218 (257)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.80  E-value=6e-19  Score=143.65  Aligned_cols=177  Identities=11%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+..+.|.+|++++|.|.+...                          +...+.|++++..+..         ...+.  
T Consensus        54 ~~~~~~v~~g~~~~L~c~~~~~--------------------------~~~~~~W~~~~~~l~~---------~~~~~--   96 (527)
T 3qs9_E           54 EAAAVEVDVSASITLQVLVDAP--------------------------GNISCLWVFKHSSLNC---------QPHFD--   96 (527)
T ss_dssp             --CEEEECSSCCEEEEEECSCC--------------------------SSCEEEEEETTEEECC---------CCBC---
T ss_pred             eeeeEEEeccccEEEEEEEecC--------------------------CceeEEEEecCCccCc---------ccccC--
Confidence            3447899999999999998532                          2346899998664321         11111  


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWR  173 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~  173 (238)
                      ..+....+|.|.+++.+|+|.|+|.+.+... .....+.|.+.+.+.... ........++.+.|.|.+.|.|.|.++|+
T Consensus        97 ~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~-~~~~~~~v~v~~~~~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~  174 (527)
T 3qs9_E           97 LQNRGVVSMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWV  174 (527)
T ss_dssp             ----CEEEEEESSCCSSSCSEEEEEEEC--C-EEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEE
T ss_pred             CCcceEEEEEECcCChhhCeeEEEEEEeccc-cEEEEEEEEECCceeecc-CCCcEEecCCceEEEEEEceecCCeEEEE
Confidence            1111233799999999999999999987533 334445555444332211 11123345677889999999999999999


Q ss_pred             eCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         174 REDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +++.. ......       .....-......+..+|.|.|+|.|.|..|...++.+.|.|..+|
T Consensus       175 ~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p  230 (527)
T 3qs9_E          175 LCDSQ-GESCKE-------ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP  230 (527)
T ss_dssp             EC---------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCC
T ss_pred             ECCCC-Cccccc-------cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccC
Confidence            95432 211000       000000111223457899999999999999665555777776544

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=131.30  Aligned_cols=171  Identities=15%  Similarity=0.240  Sum_probs=108.2

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.|......+.+.+|+++.|.|.+..                              .+.|++++..+..           
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~------------------------------~v~W~~~~~~~~~-----------   39 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSA------------------------------PVVWERMSQEPPQ-----------   39 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESS------------------------------CCEEEBTTBCCSE-----------
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccc------------------------------eEEEECCCCCccc-----------
Confidence            45555667788999999999999852                              1899998776421           


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcC-CcccccccCCc---eeecCCCcEEEEEEE
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP-PDISSEETSGD---MMVPEGGSAKLVCKA  162 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~-~~~~~~~~~~~---~~~~~g~~~~l~C~~  162 (238)
                      +...........+|.|.+++.+|+|.|+|.+.+...  ......+.|.+. |..........   ..+.+|+.+.|.|.+
T Consensus        40 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~  119 (289)
T 3mjg_X           40 EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV  119 (289)
T ss_dssp             EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB
T ss_pred             ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc
Confidence            111111111234899999999999999999977542  223345555543 22222111212   568899999999999


Q ss_pred             ccccCCeEEEEeCC-CeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         163 KGYPTPKITWRRED-NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       163 ~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      . .|.+.+.|++.+ +..+...         .. ....+    ....|.|.|+|.|.|..+...+..+.|.|..
T Consensus       120 ~-~p~~~v~w~~~~~~~~~~~~---------~~-~~~~~----~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~  178 (289)
T 3mjg_X          120 T-DPQLVVTLHEKKGDVALPVP---------YD-HQRGF----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ  178 (289)
T ss_dssp             S-CTTSCEEEEESSCCSCCCCC---------EE-TTTEE----EECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred             C-CCCceEEEEeCCCCCcccee---------ec-CCcCe----eeeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence            8 678899999854 2222100         00 00011    1357999999999988765556666666654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.79  E-value=1.7e-18  Score=127.89  Aligned_cols=182  Identities=19%  Similarity=0.299  Sum_probs=106.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------E
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------V   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~   83 (238)
                      +..+..+.+.+|+++.|.|.+....                        .+.+.+.||+............        .
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~------------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~   58 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFD------------------------FSRQGMHWVRQAPGQGLEWVAFIKYDGSEKY   58 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCEEEEEEECTTSSCEE
T ss_pred             eecCCCEEEeCCCCEEEEEEecccc------------------------CCccEEEEEEECCCCCcEEEEEEecCCCcee
Confidence            3456678899999999999996421                        1134699998542211110000        0


Q ss_pred             --eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-----------------------CcceeeEEEEEc--
Q psy7941          84 --ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-----------------------MTKQMAFLEVVI--  135 (238)
Q Consensus        84 --~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----------------------~~~~~~~l~v~~--  135 (238)
                        ....+|+.+.... ...++|.|.+++.+|+|.|.|.+.+..                       .....+.+.|..  
T Consensus        59 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~  138 (248)
T 3u2s_H           59 HADSVWGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS  138 (248)
T ss_dssp             ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC
T ss_pred             cCcccCCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC
Confidence              1124688876543 467899999999999999999996521                       112234566652  


Q ss_pred             --CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCC
Q psy7941         136 --PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSE  209 (238)
Q Consensus       136 --~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d  209 (238)
                        +|.+..  ......+..|+.+.|.|.+.+ +| ...+.|++++ .........  ...... ....+.|.+......|
T Consensus       139 ~~~P~v~~--~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~  214 (248)
T 3u2s_H          139 TKGPSVFP--LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT  214 (248)
T ss_dssp             CBCCEEEE--ECCC------CEEEEEEEEEEEBSSCCEEEEGGGT-BCTTEEECCCEECTTSC-EEEEEEEEEEGGGBTT
T ss_pred             CCCCEEEE--eCCCccccCCCcEEEEEEEeeEECCCeEEEEeECC-ccCceeecCceECCCCC-EEEEEEEEEChhhcCC
Confidence              222221  112223456899999999987 55 3479999844 321111100  000111 1222357777777778


Q ss_pred             CeEEEEEeeeCCC
Q psy7941         210 MGAYQCIAANGVP  222 (238)
Q Consensus       210 ~G~y~C~~~n~~g  222 (238)
                       |.|+|.+.|..+
T Consensus       215 -~~ytC~v~h~~~  226 (248)
T 3u2s_H          215 -QTYICNVNHKPS  226 (248)
T ss_dssp             -BCCEEEEEEGGG
T ss_pred             -CeEEEEEEECCC
Confidence             999999999876

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.79  E-value=8.3e-18  Score=119.82  Aligned_cols=161  Identities=17%  Similarity=0.218  Sum_probs=102.2

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      .+.|..|+++.|.|.+ +.                        ..|.+.|+|++.+..+            ++....   
T Consensus        16 ~v~v~~G~sv~L~C~a-~~------------------------p~P~~~i~W~~~~~~l------------~~~~~~---   55 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-AC------------------------ADRGASVQWRGLDTSL------------GAVQSD---   55 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CC------------------------SSTTCEEEEESSTTTT------------CCEEEE---
T ss_pred             ceEEeCCCCEEEEEEC-CC------------------------CCCCcceEEeeccccc------------CcEEec---
Confidence            3789999999999998 32                        1223379999966542            011111   


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccC----CeE
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPT----PKI  170 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~----~~~  170 (238)
                      .....|.|.+++.+|+|.|.|.+.+... ....+.|.|..+|....... .  ....|+.. |.|.+.+ +|.    +++
T Consensus        56 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~-~--~~~~g~~~-l~C~a~g~~P~~~~~lti  131 (210)
T 1gsm_A           56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSP-A--ALVPGDPE-VACTAHKVTPVDPNALSF  131 (210)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEES-S--SBCTTCCE-EEEEEEEEBCCCTTTEEE
T ss_pred             CCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEcc-c--eEEeCCce-EEEEeCCCCCCCCCCcEE
Confidence            2223899999999999999999987643 34467889998887654322 1  45667778 9999988 574    489


Q ss_pred             EEEeCCCeeeEeecCCC-----------CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         171 TWRREDNKEIIVRSNPP-----------SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       171 ~W~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|++ ++..+.......           ........-.+.|.+.....++.+.|+|.|.+...
T Consensus       132 ~Wlk-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          132 SLLV-GGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             EEEE-TTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             EEEE-CCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence            9999 555542211000           00111111122344444444444699999999873

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.79  E-value=1.1e-18  Score=139.73  Aligned_cols=157  Identities=15%  Similarity=0.193  Sum_probs=113.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceE-----EEEeCCceeeeeeeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKV-----AWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~W~~~~~~~~~~~~~~~~~   85 (238)
                      +...|..+.+.+|+++.|.|.+..                           |.+.+     .|+|++....         
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g---------------------------p~p~~~~~~~~w~k~~~~~~---------   45 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC---------------------------DQPMLLGIETPLPKKELLLP---------   45 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS---------------------------SCCCEEEECSSSCEEECCSS---------
T ss_pred             cccCCCceEEecCCcEEEEEEccC---------------------------CCcccccccceeeecceEec---------
Confidence            456778889999999999999863                           24456     8888643211         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                       +.++         ..|.|.+++. |+| |+|.+.+.+. ....+.|.|..+|.+... .+....+.+|+.+.|.|.+.+
T Consensus        46 -~~~~---------~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~-~~~~~~v~~G~~v~L~C~~~g  112 (450)
T 1z7z_I           46 -GNNR---------KVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKNLTLRCQVEG  112 (450)
T ss_dssp             -TTTE---------EEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEE-CCCCSEECTTSEEEEEEEEEC
T ss_pred             -CCCc---------eEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCccee-cCCCceEeeCCeEEEEEEecC
Confidence             1121         1788999987 999 9999965432 344567888887766532 233456889999999999999


Q ss_pred             ccCC---eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         165 YPTP---KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       165 ~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .|++   .+.|++ ++..+.......      ...+..|.|..+..+|.|.|+|.|.|..|.
T Consensus       113 ~~~~~~~~v~W~k-~g~~l~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  167 (450)
T 1z7z_I          113 GAPRANLTVVLLR-GEKELKREPAVG------EPAEVTTTVLVRRDHHGANFSCRTELDLRP  167 (450)
T ss_dssp             CBCGGGEEEEEEE-TTEEEEEEECCT------TTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             CCCCcCcEEEEee-CCEEeecccccc------cccceEEEEEeeccccCceEEEEEEcccCC
Confidence            8887   999999 555554332111      112347999999999999999999999773

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.78  E-value=4.5e-18  Score=125.97  Aligned_cols=185  Identities=16%  Similarity=0.290  Sum_probs=111.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeeee--
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIHE--   81 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~~--   81 (238)
                      .+.+...+..+.+.+|+++.|.|.+..                           +.+.+.|+++...  .  +.....  
T Consensus         3 ~~~v~q~p~~v~v~~G~~v~L~C~~~~---------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~   55 (252)
T 1oga_E            3 DGGITQSPKYLFRKEGQNVTLSCEQNL---------------------------NHDAMYWYRQDPGQGLRLIYYSQIVN   55 (252)
T ss_dssp             --CEECSCSEEEEETTCCEEECCEECS---------------------------CCSEEEEEEECTTCCEEEEEEESSTT
T ss_pred             cccceEcCCeEEEcCCCcEEEEEEeCC---------------------------CCCEEEEEEECCCCCeEEEEEEccCc
Confidence            355677888999999999999999842                           1346999996421  1  111100  


Q ss_pred             eEe--ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC----CcceeeEEEEEc------CCcccccccCCcee
Q psy7941          82 HVI--TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP----MTKQMAFLEVVI------PPDISSEETSGDMM  149 (238)
Q Consensus        82 ~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~------~~~~~~~~~~~~~~  149 (238)
                      ...  ...+|+.+.......++|.|.+++.+|+|.|+|.+.+..    .....+.+.|..      +|.+... .+....
T Consensus        56 ~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~-~~~~~~  134 (252)
T 1oga_E           56 DFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVF-EPSEAE  134 (252)
T ss_dssp             CCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEE-CCCHHH
T ss_pred             cccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEE-CCChhh
Confidence            000  124677765433456799999999999999999997641    112234566653      2332221 111122


Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---------CCcceEEEeeceEEEEEeecC-CCeEEEEEe
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP---------SSQKVFSVESEVLSLTKVTRS-EMGAYQCIA  217 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~  217 (238)
                      +..|+.+.|.|.+.| +|.+ .+.|++ ++..+.......         ..... ....+.|.|...... +.|.|+|.+
T Consensus       135 ~~~g~~~~L~C~~~g~~P~~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~gt-~~~~s~L~i~~~~~~d~~~~ytC~v  212 (252)
T 1oga_E          135 ISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNHFRCQV  212 (252)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECSSEEECSSCEESCTTSTTCC-EEEEEEEEEEHHHHTCTTCEEEEEE
T ss_pred             hccCCceEEEEEEeeEcCCCcEEEEEE-CCEECCCCcccccccccccccCCCCC-EEEEEEEEECHHHhccCCCEEEEEE
Confidence            346889999999988 4754 999999 555443211000         01111 112234666655554 567999999


Q ss_pred             eeCCC
Q psy7941         218 ANGVP  222 (238)
Q Consensus       218 ~n~~g  222 (238)
                      .|...
T Consensus       213 ~~~~l  217 (252)
T 1oga_E          213 QFYGL  217 (252)
T ss_dssp             EECCB
T ss_pred             EcCCC
Confidence            99864

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.78  E-value=5.1e-18  Score=135.76  Aligned_cols=177  Identities=11%  Similarity=0.203  Sum_probs=113.9

Q ss_pred             cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc---eEEEEeCCceeeeeeeeeE
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM---KVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~W~~~~~~~~~~~~~~~   83 (238)
                      +|.+. ..+....+.+|+++.|.|.+.+                          .|++   .+.|+|++..+.....   
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g--------------------------~~~~~~~~v~W~k~g~~l~~~~~---  135 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEG--------------------------GAPRANLTVVLLRGEKELKREPA---  135 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEEC--------------------------CBCGGGEEEEEEETTEEEEEEEC---
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecC--------------------------CCCCcCcEEEEeeCCEEeecccc---
Confidence            44444 5666678899999999999864                          2244   7999998765432110   


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--------eeeEEEEEcCCcccccccCCceeecCCC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--------QMAFLEVVIPPDISSEETSGDMMVPEGG  154 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--------~~~~l~v~~~~~~~~~~~~~~~~~~~g~  154 (238)
                       .         ......+|.|.++..+|+|.|+|.+.+.... .        ....+.|...+... +.......+.+|+
T Consensus       136 -~---------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~-p~~~~~~~v~~G~  204 (450)
T 1z7z_I          136 -V---------GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP-PQLVSPRVLEVDT  204 (450)
T ss_dssp             -C---------TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSC-CEEECCSEEETTS
T ss_pred             -c---------ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCC-CEecCceeEEeCC
Confidence             0         0112238999999999999999999765221 1        22334444321110 0001115678999


Q ss_pred             cEEEEEEEccc-c--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE---EeecCCCe--EEEEEeeeCCCCCcc
Q psy7941         155 SAKLVCKAKGY-P--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT---KVTRSEMG--AYQCIAANGVPPTVS  226 (238)
Q Consensus       155 ~~~l~C~~~~~-p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G--~y~C~~~n~~g~~~~  226 (238)
                      .+.|.|.+.|. |  .+.+.|++ ++..+...         .......+.+.   ++..+|.|  .|+|.+.|..|. ..
T Consensus       205 ~v~l~C~~~g~~P~~~~~~~W~~-~~~~~~~~---------~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~-~~  273 (450)
T 1z7z_I          205 QGTVVCSLDGLFPVSEAQVHLAL-GDQRLNPT---------VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QE  273 (450)
T ss_dssp             EEEEEEEEESCTTGGGCEEEEEE-TTEECCCE---------EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE-EE
T ss_pred             cEEEEEEeeCCCCCCceEEEEeC-CCEeCCce---------EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc-EE
Confidence            99999999987 7  67999999 44433211         11111112221   66899999  999999999884 36


Q ss_pred             ceEEEEEEe
Q psy7941         227 KRLMLHVHC  235 (238)
Q Consensus       227 ~~~~l~V~~  235 (238)
                      ..+.|.|..
T Consensus       274 ~~~~l~V~~  282 (450)
T 1z7z_I          274 TLQTVTIYS  282 (450)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            677788876

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.78  E-value=3.1e-18  Score=126.86  Aligned_cols=180  Identities=16%  Similarity=0.268  Sum_probs=107.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee----e
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE----H   82 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~----~   82 (238)
                      +...+..+.+.+|+++.|.|.+.+.                          +.+.+.|||....    .......    .
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~   57 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNS--------------------------QYPWMSWYQQDLQKQLQWLFTLRSPGDKE   57 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCT--------------------------TCCCEEEEEEETTCCEEEEEEECSTTCEE
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCC--------------------------CcceEEEEEECCCCCcEEEEEECCCccee
Confidence            3456778899999999999997532                          2456999984211    1111100    0


Q ss_pred             EeecCc-cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-------cceeeEEEEEc------CCcccccccCCce
Q psy7941          83 VITNNA-RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-------TKQMAFLEVVI------PPDISSEETSGDM  148 (238)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~------~~~~~~~~~~~~~  148 (238)
                      .....+ |+.+.......  |.|.+++.+|+|.|+|.+.+...       ....+.+.|..      +|.+.... +...
T Consensus        58 ~~~~~~~R~~~~~~~~~~--L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~-~~~~  134 (253)
T 3to4_D           58 VKSLPGADYLATRVTDTE--LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFE-PSEA  134 (253)
T ss_dssp             EEEETTEEEEEECCSSSC--CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEE-CCHH
T ss_pred             cCCccCCcEEEEeCCCCe--EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeC-CChh
Confidence            001123 77766544333  99999999999999999975421       12234566653      22222111 1111


Q ss_pred             eecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEE
Q psy7941         149 MVPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCI  216 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~  216 (238)
                      .+..|+.+.|.|.+.| +|.+ .+.|++ ++..+........         .... ....+.|.+.....+| .|.|+|.
T Consensus       135 ~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~d~~~~ytC~  212 (253)
T 3to4_D          135 EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YALSSRLRVSATFWQNPRNHFRCQ  212 (253)
T ss_dssp             HHHHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECTTEEECSSCEESSTTCTTCC-EEEEEEEEEEHHHHTCTTCEEEEE
T ss_pred             hcccCCceEEEEEEceEECCcEEEEEEE-CCEECCCceecccccccccccCCCCC-EEEEEEEEECHHHhccCCCEEEEE
Confidence            2334689999999988 7777 899999 5555432110000         0111 1122357777777777 6699999


Q ss_pred             eeeCC
Q psy7941         217 AANGV  221 (238)
Q Consensus       217 ~~n~~  221 (238)
                      |.|..
T Consensus       213 v~h~~  217 (253)
T 3to4_D          213 VQFYG  217 (253)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99975

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.78  E-value=7.7e-19  Score=134.70  Aligned_cols=178  Identities=16%  Similarity=0.278  Sum_probs=108.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc---eEEEEeCCceeeeeeeeeE-eec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM---KVAWIKADTKAVLAIHEHV-ITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~W~~~~~~~~~~~~~~~-~~~   86 (238)
                      +..++..+.+.+|+++.|.|.+.+.                         .|.+   .+.|+++++.......... ...
T Consensus       116 ~~~~p~~~~v~~G~~v~L~C~~~g~-------------------------~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~  170 (323)
T 2wqr_A          116 YLSRPSPFDLFIRKSPTITCLVVDL-------------------------APSKGTVQLTWSRASGKPVNHSTRKEEKQR  170 (323)
T ss_dssp             EECCCCHHHHHTSSCCEEEEEEEEE-------------------------CCCSSCCEEEEEETTCCCCCCCCCEEEECT
T ss_pred             EEcCCCHHHhccCCeEEEEEEEecc-------------------------CCCCCceEEEEEECCCcccccccCCCccCC
Confidence            3455666667889999999998642                         1223   7999997654332111111 112


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE------cCCcccccccCCceeecCCCcEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAKLVC  160 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~~g~~~~l~C  160 (238)
                      ++++...      ..|.|.+++.+|+|.|+|.+.+.... ....+.|.      .+|.+.......  ....|+.+.|.|
T Consensus       171 ~g~~~~~------~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~--~~~~g~~~~l~C  241 (323)
T 2wqr_A          171 NGTLTVT------STLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPE--WPGSRDKRTLAC  241 (323)
T ss_dssp             TSCEEEE------EEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCC--CTTCTTEEEEEE
T ss_pred             CCCEEEE------EEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCCh--HHhcCCcEEEEE
Confidence            3334322      28999999999999999999876432 22334442      334333221111  122399999999


Q ss_pred             EEcc-ccCC-eEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         161 KAKG-YPTP-KITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       161 ~~~~-~p~~-~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .+.| .|.+ .+.|++ ++..+.....    ......-.....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       242 ~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          242 LIQNFMPEDISVQWLH-NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEEBSSCCEEEEEE-TTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EeeeeeCCCcEEEEEE-CCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            9988 4544 899999 5554422100    00000001122346899999999999999999998874

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.78  E-value=1.4e-17  Score=124.14  Aligned_cols=160  Identities=18%  Similarity=0.224  Sum_probs=106.7

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc--eEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM--KVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      .+.+|+++.|.|.+.+.                         .|.+  .+.|++++..+..    .....+.        
T Consensus        14 ~v~~G~~v~l~C~~~g~-------------------------~p~p~~~v~W~k~~~~l~~----~~~~~~~--------   56 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGL-------------------------FPVSEAQVHLALGDQRLNP----TVTYGND--------   56 (265)
T ss_dssp             EEETTEEEEEEEEEESC-------------------------SCGGGCEEEEEETTEECCC----EEEECSS--------
T ss_pred             eEecCCCEEEEEEccCC-------------------------CCCcceEEEEEeCCEECCc----eEeeCCC--------
Confidence            67899999999999641                         2333  7999998765432    1111111        


Q ss_pred             CCeEEEEEc---ccCcccCe--EEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeE
Q psy7941          97 ANTWTLNIR---SVRREDRG--YYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKI  170 (238)
Q Consensus        97 ~~~~~L~i~---~~~~~d~G--~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~  170 (238)
                          .|.+.   .++.+|.|  .|+|.+.+. +.....+.|.|...|.+.+.  .....+.+|+.+.|.|.+.  |.+.+
T Consensus        57 ----~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i  128 (265)
T 2oz4_A           57 ----SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKV  128 (265)
T ss_dssp             ----EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEE
T ss_pred             ----eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEE
Confidence                33333   33778887  599999876 33445667888764443322  2334577899999999988  88999


Q ss_pred             EEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-CCCc--cceEEEEEEeec
Q psy7941         171 TWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTV--SKRLMLHVHCTY  237 (238)
Q Consensus       171 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g~~~--~~~~~l~V~~~p  237 (238)
                      .|   ++..+..           ......|.+..+..+|.|.|+|.|.|.. |...  +..+.|.|..+|
T Consensus       129 ~W---~g~~~~~-----------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p  184 (265)
T 2oz4_A          129 TL---NGVPAQP-----------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP  184 (265)
T ss_dssp             EE---SSCSSSC-----------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE
T ss_pred             EE---CCEEccC-----------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC
Confidence            99   3333311           0122458888888999999999998655 6432  267888888876

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.78  E-value=2.9e-18  Score=137.51  Aligned_cols=179  Identities=20%  Similarity=0.254  Sum_probs=112.5

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee------eeE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH------EHV   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~------~~~   83 (238)
                      .+..+.+.+|+++.|.|.+.....                        ..+.+.|+|+..  ..  .....      ...
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~   61 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRF------------------------SNFVIHWVRQAPGQRFEWMGWINPYNGNKEFS   61 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCG------------------------GGSCEEEEEECTTSCCEEEEEEETTTTEEEEC
T ss_pred             cCCceEEcCCCCEEEEEEecCccc------------------------cCcEEEEEEeCCCCCcEEEEEEecCCCceecC
Confidence            345678999999999999964310                        134699998532  11  11110      000


Q ss_pred             eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC-------------cceeeEEEEEc----CCcccccccC
Q psy7941          84 ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM-------------TKQMAFLEVVI----PPDISSEETS  145 (238)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~l~v~~----~~~~~~~~~~  145 (238)
                      ....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+...             ....+.+.|..    +|.+...  .
T Consensus        62 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~  139 (457)
T 1hzh_H           62 AKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPL--A  139 (457)
T ss_dssp             TTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEE--C
T ss_pred             ccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEec--C
Confidence            1124688776543 4667999999999999999999976532             22345677764    2332221  1


Q ss_pred             CceeecCCCcEEEEEEEccc-cC-CeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY-PT-PKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ....+.+|+.+.|.|.+.|. |. +.+.|++++ ..+.....   ......  ....+.|.|..+..+| |.|+|.|.|.
T Consensus       140 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~--~~~~s~L~i~~~~~~d-G~Y~C~a~n~  215 (457)
T 1hzh_H          140 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA-LTSGVHTFPAVLQSSGL--YSLSSVVTVPSSSLGT-QTYICNVNHK  215 (457)
T ss_dssp             CCSCCCTTCCEEEEEEEESBBSCCCEEEETTTT-BCTTEEEEEEEECTTSC--EEEEEEEEECSGGGGT-SCCEEEEEEG
T ss_pred             ccccccCCCcEEEEEEEeEEeCCCeEEEEEeCC-EeccceEcCceECCCCC--EEEEEEEEecccccCC-ceEEEEEEeC
Confidence            12235789999999999885 65 799999944 22110000   000011  1122468899898889 9999999997


Q ss_pred             CC
Q psy7941         221 VP  222 (238)
Q Consensus       221 ~g  222 (238)
                      .+
T Consensus       216 ~~  217 (457)
T 1hzh_H          216 PS  217 (457)
T ss_dssp             GG
T ss_pred             CC
Confidence            76

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=7.5e-17  Score=115.84  Aligned_cols=174  Identities=19%  Similarity=0.319  Sum_probs=106.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-eeeeeeeEeecC
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-VLAIHEHVITNN   87 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~~~~~~~~~~~~   87 (238)
                      +...+..+.+.+|+++.|.|.+...                           .+.+.|+|+..  .. ............
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~---------------------------~~~v~W~r~~~~~~~~~~~~~~~~~~~~   56 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTT---------------------------MRSVQWFRQNSRGSLISLFYLASGTKEN   56 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSC---------------------------CSEEEEEEECTTSCCEEEEEESSEEEEE
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCC---------------------------CeEEEEEEeCCCCCeEEEEEEccCCccC
Confidence            4567888999999999999998632                           12599999642  11 111111111235


Q ss_pred             ccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC------------cceeeEEEEEcCCcccccccCCceeecCC
Q psy7941          88 ARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM------------TKQMAFLEVVIPPDISSEETSGDMMVPEG  153 (238)
Q Consensus        88 ~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~l~v~~~~~~~~~~~~~~~~~~~g  153 (238)
                      +|+.+...  ....++|.|.+++.+|+|.|+|.+.+...            ....+.|.|........   ...+.+..+
T Consensus        57 ~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~---~P~v~~~~~  133 (207)
T 1ypz_E           57 GRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA---KPSVFIMKN  133 (207)
T ss_dssp             TTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC---CCEEEEEEE
T ss_pred             CCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC---CCeEEEeCC
Confidence            67877654  25677999999999999999999976421            11235677764221111   111222222


Q ss_pred             CcEEEEEEEcc-ccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec-CCCeEEEEEeeeCCC
Q psy7941         154 GSAKLVCKAKG-YPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-SEMGAYQCIAANGVP  222 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~n~~g  222 (238)
                       .+.|.|.+.+ +|. +.+.|+++  ..+....     .......++.+.+..... +|.|.|+|.+.|..+
T Consensus       134 -~~~l~C~~~g~~P~~~~v~W~~~--~~l~~~~-----~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~  197 (207)
T 1ypz_E          134 -GTNVACLVKDFYPKEVTISLRSS--KKIVEFD-----PAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE  197 (207)
T ss_dssp             -TTEEEEEEEEESSSCCEEEEECS--SEEEECC-----CEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred             -CCeEEEEEeeEeCCCeEEEEecC--CcccCCc-----cceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence             3799999987 454 69999995  3443211     111111223344433443 678999999999876

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.77  E-value=1.5e-17  Score=121.42  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=107.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee------eEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE------HVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~------~~~   84 (238)
                      +..+.+.+|+++.|.|.+.....                        ....+.||+.....    ......      ...
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~   62 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTF------------------------THYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQ   62 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTSCEEEEEEECTTTCCEEECG
T ss_pred             cCCEEEcCCCCEEEEEEeeccee------------------------cCcEEEEEEECCCCCcEEEEEEecCCCceecCc
Confidence            44688999999999999964211                        13459999853211    111100      001


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC---------CcceeeEEEEEc----CCcccccccCCceee
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP---------MTKQMAFLEVVI----PPDISSEETSGDMMV  150 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~~~~~~~~~~~~~~~  150 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+..         .....+.|.|..    +|.+...  .....+
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~--~~~~~~  140 (230)
T 3n9g_H           63 KLQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPL--APSSKS  140 (230)
T ss_dssp             GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE--CCCCCC
T ss_pred             ccCCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEec--CCCccc
Confidence            124688876654 377899999999999999999997643         111334566652    2222211  122234


Q ss_pred             cCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeE-eecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YP-TPKITWRREDNKEII-VRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|+.+.|.|.+.+ +| .+.+.| . +..... ....  ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus       141 ~~g~~v~L~C~~~~~~P~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  213 (230)
T 3n9g_H          141 TSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (230)
T ss_dssp             CTTCEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEESTTBTT-BCCEEEEEEGGG
T ss_pred             cCCCCEEEEEEEEeEECCCEEEEE-C-CcccCCCeEeCCceECCCCC-EEEEEEEEECHHHcCC-CeEEEEEEECCC
Confidence            57899999999988 45 347999 3 322110 0000  0000111 1223368888888888 999999999876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.77  E-value=1.5e-17  Score=132.90  Aligned_cols=182  Identities=19%  Similarity=0.290  Sum_probs=113.0

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeee---eee------ee
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVL---AIH------EH   82 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~---~~~------~~   82 (238)
                      ..+..+.+.+|+++.|.|.+.....                        +.+.+.|+|+.. ....   ...      ..
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~   60 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTF------------------------SDYYMYWVRQTPEKRLEWVAYISNGGGSTYY   60 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCEEEEEEECTTSSCEEC
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCcc------------------------CCceEEEEEeCCCCCcEEEEEEecCCCceec
Confidence            3455678999999999999964211                        134699998642 2111   100      00


Q ss_pred             EeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc----ceeeEEEEEc----CCcccccccCCceeecCC
Q psy7941          83 VITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT----KQMAFLEVVI----PPDISSEETSGDMMVPEG  153 (238)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~----~~~~~~~~~~~~~~~~~g  153 (238)
                      .....+|+.+... ....++|.|.+++.+|+|.|.|.+.+....    ...+.|.|..    +|.+...  .....+.+|
T Consensus        61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~g  138 (444)
T 1igt_B           61 PDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPL--APVCGDTTG  138 (444)
T ss_dssp             CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEE--CCCSSCCCS
T ss_pred             CcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEe--cccccCCCC
Confidence            0112457777653 245679999999999999999999875322    2234566653    2322211  111224689


Q ss_pred             CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.+.|.|.+.| .|.| .+.|++++.. ......... .... ....+.|.|..+..+| |.|+|.|.|..|.
T Consensus       139 ~~v~L~C~~~g~~P~p~~v~W~~~~~~-~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~  208 (444)
T 1igt_B          139 SSVTLGCLVKGYFPEPVTLTWNSGSLS-SGVHTFPAVLQSDL-YTLSSSVTVTSSTWPS-QSITCNVAHPASS  208 (444)
T ss_dssp             SCEEEEEEEEEEBSSCCEEEEGGGTBC-TTEEECCCEEETTE-EEEEEEEEECSTTTTT-SCCEEEEEETTTT
T ss_pred             CcEEEEEEEcceeCCCcEEEEecCCCC-CCeEecCccccCCc-EEEEEEEEEchhhcCC-CeEEEEEEeCCCC
Confidence            99999999988 4777 9999995432 110000000 0011 1123468888888889 9999999999884

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.76  E-value=6.3e-18  Score=139.43  Aligned_cols=177  Identities=17%  Similarity=0.241  Sum_probs=108.3

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---eecCccEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---ITNNARLS   91 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~   91 (238)
                      .+.+.+.+|+++.|+|.+..                         +.|.+.++|++++...........   .....|..
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~-------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~  427 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAP-------------------------KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR  427 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCC-------------------------SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSE
T ss_pred             hcccceecCCcEEEeeeecC-------------------------CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEE
Confidence            44578899999999999731                         234668999997653211100000   00122333


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP  168 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  168 (238)
                      +...    .+|.|.+++.+|+|.|+|.+.+....  ...+.|.|..+|..+............+..+.|.|.+.+ +|.|
T Consensus       428 ~~~~----~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~  503 (581)
T 3o3u_N          428 VLPN----GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG  503 (581)
T ss_dssp             ECTT----SCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC
T ss_pred             EcCC----ceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC
Confidence            3222    28999999999999999999875443  355678887765543322222233333444567999988 6999


Q ss_pred             eEEEEeCCCeeeEeecCCCC---------CcceEEEeeceEEEEEeecCC-CeEEEEEeeeCCC
Q psy7941         169 KITWRREDNKEIIVRSNPPS---------SQKVFSVESEVLSLTKVTRSE-MGAYQCIAANGVP  222 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~n~~g  222 (238)
                      .++|++ ++..+........         .... ..-.+.|.|..+..+| .|.|+|.+.|..+
T Consensus       504 ~i~W~~-~g~~l~~~~~~~~~~~~~~~~~~~g~-y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          504 TLSWHL-DGKPLVPNEKGVSVKEQTRRHPETGL-FTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             EEEEEE-TTEECCTTSTTEEEEEEEEECTTTCC-EEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             eEEEEE-CCEECCCCCCeEEEEeeeEEcCCCce-EEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence            999999 5554432110000         0000 1112368888887455 7799999999874

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.76  E-value=7e-17  Score=116.62  Aligned_cols=188  Identities=14%  Similarity=0.164  Sum_probs=118.0

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.| ..+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+...       
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g--------------------------~p~p~i~W~~~g~~l~~~-------   62 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFA--------------------------YPSATISWFRDGQLLPSS-------   62 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEE--------------------------ESCCEEEEEETTEESSCS-------
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEee--------------------------cCCCEEEEEECCeECCCC-------
Confidence            346777 5677789999999999999863                          446789999987654321       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc-
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK-  163 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-  163 (238)
                      ...++.+... ....+|.|.+++.+|.|.|+|.+.|... ....+.+.|..+|......    .....+..+.|.|... 
T Consensus        63 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~----~~~~~~~~~~l~w~~p~  137 (215)
T 3mtr_A           63 NYSNIKIYNT-PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID----QVEPYSSTAQVQFDEPE  137 (215)
T ss_dssp             SSCSEEEEEE-TTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEE----EEEEETTEEEEEEECCS
T ss_pred             CCccEEEecC-CCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcce----EEEEecceEEEEEecCC
Confidence            1134444332 2244899999999999999999987643 4445566666555543211    1123456788888632 


Q ss_pred             ---cccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         164 ---GYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       164 ---~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                         +.|..  .+.|..++.........    ..........+.|.++...+.|.|+|.|.|..|.. ..+..+.|.-+|
T Consensus       138 ~~~~~pi~~y~v~~~~~~~~~w~~~~~----~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s-~~S~~~~v~T~p  211 (215)
T 3mtr_A          138 ATGGVPILKYKAEWRAVGEEVWHSKWY----DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG-EISAASEFKTQP  211 (215)
T ss_dssp             CCCSSCEEEEEEEEEETTCCCCEEEEE----EHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC-CCCCCEEEECCC
T ss_pred             ccCCCceEEEEEEEEECCCCccccccc----ccccccccccEEECCCCCCCEEEEEEEEEeCCccc-CcccceeeEecc
Confidence               23433  47788744321110000    00000112579999999999999999999999954 333344455544

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.75  E-value=9.9e-18  Score=120.46  Aligned_cols=170  Identities=16%  Similarity=0.254  Sum_probs=91.2

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCe
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANT   99 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   99 (238)
                      .+|+++.|.|.+.+....                      .|.+.+.|+|++..+..... ......++.+.+..     
T Consensus        16 ~~G~~v~L~C~~~g~~p~----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~-----   68 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHE----------------------DPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVS-----   68 (207)
T ss_dssp             CTTSCCEEEEEEEEECSS----------------------SCCCEEEEEETTEEECCCEECCCEECTTSCEEEEE-----
T ss_pred             ecCCceEEEEEEecccCC----------------------CCCeEEEEEECCccccCcccCCceeccCCcEEEEE-----
Confidence            689999999999743210                      01247999998765432111 01111223333322     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCCcc-eeeEEE----EEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC-eEEE
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLE----VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-KITW  172 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~----v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W  172 (238)
                       .|.|......|+|.|+|.+.+..... ....+.    +..+|.+...... ...+ .+..+.|.|.+.| +|.+ .+.|
T Consensus        69 -~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~-~~~~~~L~C~~~g~~P~~~~v~W  145 (207)
T 1l6x_A           69 -VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS-RDEL-TKNQVSLTCLVKGFYPSDIAVEW  145 (207)
T ss_dssp             -EEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCC-GGGG-GSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             -EEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCC-hHHh-cCCcEEEEEEEeCeECCCeEEEE
Confidence             34444444445999999998764422 222231    2234443322111 1112 3556999999998 5553 9999


Q ss_pred             EeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         173 RREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       173 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ++ ++..+.......   ..... ....+.|.+.....+|.|.|+|.|.|...
T Consensus       146 ~k-~g~~~~~~~~~~~~~~~~gt-~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          146 ES-NGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EE-TTEEECCEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EE-CCeeccCccccCceECCCCC-EEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            99 555443211000   00010 11112344554455679999999999874

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.75  E-value=7.5e-18  Score=123.16  Aligned_cols=180  Identities=16%  Similarity=0.212  Sum_probs=107.4

Q ss_pred             ccce-eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC--ceEEEEeCCcee-eeeeeeeE
Q psy7941           8 EPDF-LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA--MKVAWIKADTKA-VLAIHEHV   83 (238)
Q Consensus         8 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~-~~~~~~~~   83 (238)
                      +|.+ +..+..+.+..|+++.|.|.+.+.                         .|.  ..+.|++++..+ ........
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~-------------------------~P~~p~~v~W~~~g~~~~~~~~~~~~   66 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNL-------------------------PSDSSLSVTWTREKSGNLRPDPMVLQ   66 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEE-------------------------SCCTTCEEEEECSSSSCCCCCCCEEE
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCc-------------------------cCCCCeEEEEEcCCeeccccccccce
Confidence            4554 356666677899999999999742                         122  369999877654 11111111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE------cCCcccccccCCceeecCCCcEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV------IPPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ...++.+...      .+|.|.+++.+|+|.|+|.+.+.... ....+.|.      .+|.+...... ...+ .+..+.
T Consensus        67 ~~~~g~~~~~------s~L~I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~-~~~~~~  137 (231)
T 2w59_A           67 EHFNGTYSAS------SAVPVSTQDWLSGERFTCTVQHEELP-LPLSKSVYRNTGPTTPPLIYPFAPH-PEEL-SLSRVT  137 (231)
T ss_dssp             ECTTSCEEEE------EEEECCHHHHHTTCCEEEEEECTTCS-SCEEEEECCCCSCCBCCEEEEECCC-GGGG-GSSEEE
T ss_pred             ECCCCcEEEE------EEEEecchhccCCCEEEEEEEcCCCC-CceEEEEecCCCCCcCCEEEEeCCC-HHHh-ccCceE
Confidence            1223344322      28999999999999999999876432 33344443      23333221111 1112 245799


Q ss_pred             EEEEEccc-cC-CeEEEEeCCCeeeEeecCCC---C-C--------cc-eEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         158 LVCKAKGY-PT-PKITWRREDNKEIIVRSNPP---S-S--------QK-VFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       158 l~C~~~~~-p~-~~~~W~~~~~~~~~~~~~~~---~-~--------~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.|.+.|. |. +.+.|++ ++..+.......   . .        .. -.....+.|.|.....+|.|.|+|.|.|...
T Consensus       138 L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          138 LSCLVRGFRPRDIEIRWLR-DHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             EEEEEEEEBSSCCEEEEEE-TTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEeccCCCcEEEEEE-CCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence            99999984 53 6999999 555443211000   0 0        00 0111223577777777889999999999875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.74  E-value=4.2e-18  Score=136.08  Aligned_cols=170  Identities=12%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCccEEEEEcCCC
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (238)
                      +.+|+++.|.|.+.+.                         .|.+ .+.|++++............. .+.+....    
T Consensus       135 ~~~g~~v~L~C~~~g~-------------------------~P~p~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~s----  184 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGY-------------------------FPEPVTLTWNSGSLSSGVHTFPAVLQ-SDLYTLSS----  184 (444)
T ss_dssp             CCCSSCEEEEEEEEEE-------------------------BSSCCEEEEGGGTBCTTEEECCCEEE-TTEEEEEE----
T ss_pred             CCCCCcEEEEEEEcce-------------------------eCCCcEEEEecCCCCCCeEecCcccc-CCcEEEEE----
Confidence            4689999999998642                         1343 799999876532111111111 13444332    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEE------------------EcCCcccccccCCcee-ecCCCcEEE
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEV------------------VIPPDISSEETSGDMM-VPEGGSAKL  158 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v------------------~~~~~~~~~~~~~~~~-~~~g~~~~l  158 (238)
                        .|.|.++..+| |.|+|.+.+..... ....+.+                  ..+|.+... .+.... +..|+.+.|
T Consensus       185 --~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~~~~~G~~~~L  260 (444)
T 1igt_B          185 --SVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF-PPKIKDVLMISLSPIV  260 (444)
T ss_dssp             --EEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE-CCCHHHHHCTTSCCEE
T ss_pred             --EEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec-CCchhheeecCCCcEE
Confidence              79999999999 99999998764422 2222211                  012222111 111112 478999999


Q ss_pred             EEEEcccc----CCeEEEEeCCCeeeEeecCCCCC--cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         159 VCKAKGYP----TPKITWRREDNKEIIVRSNPPSS--QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       159 ~C~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .|.+.|.|    .+.+.|+++ +..+.........  ........+.|.|.++..+|.|.|+|.|.|..|..
T Consensus       261 ~C~~~g~~~~p~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          261 TCVVVDVSEDDPDVQISWFVN-NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             EEEEEEECTTCCCCEEEEEET-TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             EEEEeecccCCCCeEEEEEEC-CccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            99999873    359999994 4433211100000  00001233479999999999999999999998843

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.74  E-value=5.4e-17  Score=118.17  Aligned_cols=179  Identities=15%  Similarity=0.209  Sum_probs=105.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee------eEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE------HVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~------~~~   84 (238)
                      +..+.+.+|+++.|.|.+....                        .+...+.||+....    .......      ...
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~   62 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYN------------------------FLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSP   62 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC------------------------GGGSCEEEEEECTTSCCEEEEEEETTTTEEEECT
T ss_pred             CCCEEEecCCCEEEEEEecCcc------------------------ccCCEEEEEEECCCCCcEEEEEEecCCCccccCc
Confidence            3468899999999999996421                        11346999985321    1111110      001


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC----------CcceeeEEEEEcC----CcccccccCCcee
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP----------MTKQMAFLEVVIP----PDISSEETSGDMM  149 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~----------~~~~~~~l~v~~~----~~~~~~~~~~~~~  149 (238)
                      ...+||.+.... ...++|.|.+++.+|+|.|+|.+.+..          .....+.+.|...    |.+..  ......
T Consensus        63 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~--~~~~~~  140 (226)
T 3mlr_H           63 SFEGQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFP--LAPSSK  140 (226)
T ss_dssp             TTBTTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEE--EEEEEC
T ss_pred             ccCCcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEE--ecCccc
Confidence            124678776543 367899999999999999999986532          0112334666432    22221  111223


Q ss_pred             ecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YP-TPKITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..|..+.|.|.+.+ +| .+.+.| .+..........  ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus       141 ~~~g~~~~l~C~~~~~~p~~~~v~W-~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  214 (226)
T 3mlr_H          141 STSGGTAALGCLVKDYFPEPVTVSW-NSGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS  214 (226)
T ss_dssp             STTSSEEEEEEEEEEEBSSCCEEEE-GGGTCCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             ccCCCCEEEEEEEEEEECCCeEEEE-CCccccCCeEeCCcEECCCCC-EEEEEEEEECHhHcCC-CeEEEEEEECCC
Confidence            457899999999988 55 458999 322211100000  0000111 1122368888888888 999999999876

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.74  E-value=4.9e-18  Score=135.35  Aligned_cols=182  Identities=18%  Similarity=0.280  Sum_probs=112.0

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeeee---------e
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIHE---------H   82 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~---------~   82 (238)
                      ..+..+.+.+|+++.|.|.+....                        .+.+.+.|+|++. ........         .
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~   59 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYT------------------------FTTYTIHWIKQRPGQGLEWIGYINPSSVYTNY   59 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSC------------------------GGGCCCEEEEECTTCCEEEEEECCSSSCCCCC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCc------------------------ccCceEEEEEECCCCCCEEEEEEccCCCceec
Confidence            345667899999999999996421                        0135699999642 11110000         0


Q ss_pred             EeecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc----CCcccccccCCceeecCCCcE
Q psy7941          83 VITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI----PPDISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----~~~~~~~~~~~~~~~~~g~~~  156 (238)
                      .....+|+.+.... ...++|.|.+++.+|+|.|+|.+.+.. .....+.|.|..    +|.+...  .....+.+|+.+
T Consensus        60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~~~~~~G~~v  137 (434)
T 1igy_B           60 NQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPL--APGSAAQTNSMV  137 (434)
T ss_dssp             CGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEE--CCCCCCCCTTEE
T ss_pred             CccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEc--CCccccCCCCcE
Confidence            01124566655432 245689999999999999999997642 223445677753    2333221  111235689999


Q ss_pred             EEEEEEccc-cCC-eEEEEeCCCeeeEeecCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         157 KLVCKAKGY-PTP-KITWRREDNKEIIVRSNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       157 ~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .|.|.+.|. |.| .+.|++++ .......... ..... ....+.|.|..+..+| |.|+|.|.|..|.
T Consensus       138 ~L~C~~~g~~P~p~~v~W~k~~-~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~  204 (434)
T 1igy_B          138 TLGCLVKGYFPEPVTVTWNSGS-LSSGVHTFPAVLQSDL-YTLSSSVTVPSSPRPS-ETVTCNVAHPASS  204 (434)
T ss_dssp             EEEEEEEEEBSSCCEEEETTTT-BCSSEEECCCEECSSC-EEEEEEEEEETTTTTS-SCCEEEEECTTTT
T ss_pred             EEEEEEeeecCCCeEEEEeeCC-cCCCeEecCceecCCc-EEEEEEEEEcchhcCC-CcEEEEEEeCCCC
Confidence            999999885 776 99999954 3211110000 00011 1123468888888888 9999999999884

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.74  E-value=1.4e-17  Score=122.18  Aligned_cols=182  Identities=16%  Similarity=0.261  Sum_probs=101.9

Q ss_pred             ccce-eccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeee-eE
Q psy7941           8 EPDF-LYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHE-HV   83 (238)
Q Consensus         8 ~p~~-~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~-~~   83 (238)
                      .|.+ +.++.... +.+|+++.|.|.+.+...                       .|.+ .+.|+++++.+...... ..
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~-----------------------~P~~~~v~W~k~~~~~~~~~~~~~~   71 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQ-----------------------NDPEVRFSWFIDDVEVHTAQTHAPE   71 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECT-----------------------TCCCCEEEEEESSCEECCCEECCCE
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCcc-----------------------CCCCCEEEEEECCccccCcccccce
Confidence            3443 34444433 779999999999974310                       0233 69999987554321110 11


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEE----EEEcCCcccccccCCceeecCCCcEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFL----EVVIPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ...++++...      .+|.|.+++.+|+|.|+|.+.+..... ....+    .+..+|.+.......  ....|+.+.|
T Consensus        72 ~~~~~~~~~~------s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L  143 (239)
T 1i1c_A           72 KQSNSTLRSV------SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK--EEMTQSQVSI  143 (239)
T ss_dssp             ECTTSCEEEE------EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCG--GGGGSSEEEE
T ss_pred             EcCCCcEEEE------EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCCh--HHhcCCcEEE
Confidence            1123344332      289999999999999999998764422 22222    222344433222111  1234778999


Q ss_pred             EEEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         159 VCKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       159 ~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.+.| +|.+ .+.|++ ++..+.......   ..... ......|.+.....+|.|.|+|.|.|...
T Consensus       144 ~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~dgt-~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          144 TCMVKGFYPPDIYTEWKM-NGQPQENYKNTPPTMDTDGS-YFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EEEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEeeeECCCeEEEEEE-CCEECCCceecCceECCCCC-EEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            999988 5653 899999 555442111000   00000 11112344444444578999999999875

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.74  E-value=5.5e-18  Score=129.94  Aligned_cols=183  Identities=13%  Similarity=0.163  Sum_probs=106.8

Q ss_pred             cccceeccCceeEEEec--CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeE
Q psy7941           7 FEPDFLYPLENVTIAQG--RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHV   83 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~   83 (238)
                      .+|.+...+.......|  +++.|.|.+.+..+                        +.+.++|+|++..+..... ...
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P------------------------~~~~v~W~k~g~~l~~~~~~~~~   61 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTP------------------------GTIQITWLEDGQVMDVDLSTAST   61 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECC------------------------CCEEEEEEETTEECCGGGEEEEE
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeEC------------------------CCeEEEEEECCEEcccceecCCc
Confidence            45655433332222234  69999999974211                        1357999998765432111 011


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE--E---cCCcccccccCCceeecCCCcEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV--V---IPPDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v--~---~~~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ...++++....      .|.|.+...+|+|.|+|.+.+.... ....+.+  .   ..+.+.. ..+....+.+|+.+.|
T Consensus        62 ~~~~g~~~~~s------~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~-~~p~~~~v~~G~~v~L  133 (323)
T 2wqr_A           62 TQEGELASTQS------ELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYL-SRPSPFDLFIRKSPTI  133 (323)
T ss_dssp             EEETTEEEEEE------EEEEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEE-CCCCHHHHHTSSCCEE
T ss_pred             CccCCcEEEEE------EEEEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEE-cCCCHHHhccCCeEEE
Confidence            11134444433      7888888888999999999875432 1111211  0   0111111 1122334678999999


Q ss_pred             EEEEccc-cCC---eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         159 VCKAKGY-PTP---KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       159 ~C~~~~~-p~~---~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.+.|. |.+   .+.|+++++..+.......  ...... ...+.|.|.++..+|.|.|+|.|.|..+
T Consensus       134 ~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          134 TCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTL-TVTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             EEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCE-EEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCE-EEEEEEEECHHHccCCCCEEEEEECCCC
Confidence            9999885 566   8999996554432111000  000011 1344799999999999999999999874

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.73  E-value=8.2e-17  Score=119.44  Aligned_cols=178  Identities=18%  Similarity=0.280  Sum_probs=103.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee------eEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE------HVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~------~~~   84 (238)
                      +..+.+.+|++++|.|.+.....                        ....+.|++....    .......      ...
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~   85 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTF------------------------TNSYIHWVRQAPGKGLEWVGWITPYGGYTNYAD   85 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCG------------------------GGSCEEEEEECTTCCCEEEEEEETTTTEEEECT
T ss_pred             cCcEEEcCCCCEEEEEEeecccc------------------------CCCEEEEEEECCCCCcEEEEEEecCCCceecCC
Confidence            34677999999999999964211                        1245999985321    1111110      001


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCC------------CcceeeEEEEEc----CCcccccccCCc
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNP------------MTKQMAFLEVVI----PPDISSEETSGD  147 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~------------~~~~~~~l~v~~----~~~~~~~~~~~~  147 (238)
                      ...+|+.+.... .+.++|.|.+++.+|+|.|+|.+.+..            .....+.+.|..    +|.+...  ...
T Consensus        86 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~--~~~  163 (256)
T 3sob_H           86 SVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPL--APS  163 (256)
T ss_dssp             TTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEE--CCC
T ss_pred             CCCCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEE--CCC
Confidence            124688776543 367889999999999999999997543            112234566652    2222211  112


Q ss_pred             eeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeeeE-eecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEII-VRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+..|+.+.|.|.+.+ +| ...+.| . +..... ....  ....... ....+.|.|.....+| |.|+|.+.|..+
T Consensus       164 ~~~~~g~~v~L~C~~~~~~p~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~d-~~ytC~v~~~~~  239 (256)
T 3sob_H          164 SKSTSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLGT-QTYICNVNHKPS  239 (256)
T ss_dssp             -----TTEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             cccccCCcEEEEEEEEEEECCCeEEEE-C-CcccCCCeEeCCceeCCCCC-EEEEEEEEECHHHcCC-ceEEEEEEeCCC
Confidence            23567899999999987 55 347999 3 322110 0000  0000111 1223368888888888 999999999886

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=127.31  Aligned_cols=179  Identities=17%  Similarity=0.259  Sum_probs=112.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|..+. .+.+.+|+++.|.|.+.+.                         .|.+.+.|++++..+.         .
T Consensus         6 ~~P~~~~~~-~~~v~~G~~v~l~C~~~~~-------------------------~p~~~v~W~~~~~~~~---------~   50 (317)
T 2y25_A            6 TGPHFVEYL-SWEVTGECNVLLKCKVANI-------------------------KKETHIVWYKDEREIS---------V   50 (317)
T ss_dssp             SCCEEEEEE-EEEEETTTEEEEEEEEESC-------------------------CTTCEEEEEETTEEEC---------C
T ss_pred             CCCcEeeee-eEEECCCCeEEEEEEEcCC-------------------------CCCCEEEEEECCeEcC---------C
Confidence            467777544 5899999999999998642                         2456799999876532         1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc--CCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI--PPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      ..++...   .+..+|.|.+++.+|+|.|+|.+.+.... ....+.+.+  .+.+..  ......+..|+.+.|.|.+.+
T Consensus        51 ~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~--~~~~~~~~~g~~~~l~c~~~~  124 (317)
T 2y25_A           51 DEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMM--EVCKKIALSATDLKIQSTAEG  124 (317)
T ss_dssp             SCC--------CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHH--HHHHHHHTCBCCCEEEECSSE
T ss_pred             CCcEEEE---CCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEEEEecCccccc--cCCceecccCCCeEEEeeccc
Confidence            2233222   22359999999999999999999775432 222333322  221111  112233455666677666655


Q ss_pred             ----------ccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         165 ----------YPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       165 ----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                                .|.+.+.|+++ +..+....     ......  ....|.|.++..+|.|.|+|.|.|..|.. ..++.+.
T Consensus       125 ~~l~c~~~~~~p~~~i~W~~~-~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  197 (317)
T 2y25_A          125 IQLYSFVTYYVEDLKVNWSHN-GSAIRYSD-----RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS  197 (317)
T ss_dssp             EEEEEEBSSCCSSCEEEEEES-SSBCCCCS-----SEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             cEEEEEeccCCCCcEEEEEEC-CEECCCCC-----CeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEe
Confidence                      68889999994 44332211     111111  12359999999999999999999988833 5555554


Q ss_pred             E
Q psy7941         233 V  233 (238)
Q Consensus       233 V  233 (238)
                      |
T Consensus       198 v  198 (317)
T 2y25_A          198 G  198 (317)
T ss_dssp             H
T ss_pred             e
Confidence            3

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.73  E-value=9e-16  Score=124.76  Aligned_cols=186  Identities=19%  Similarity=0.283  Sum_probs=108.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeeee-----eEe
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIHE-----HVI   84 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~~-----~~~   84 (238)
                      .+..+.+.+|+++.|.|.+.....                      ....+.+.||++.  ...  +.....     ...
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~   63 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPI----------------------RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNP   63 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEccccc----------------------CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECC
Confidence            356788999999999999964210                      0001459999863  111  111110     001


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecCCC--------------cceeeEEEEEc----CCcccccccC
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTNPM--------------TKQMAFLEVVI----PPDISSEETS  145 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~~~~~~~~~~  145 (238)
                      ...+||.+.... ...++|.|.+++.+|+|.|+|.+.+...              ....+.|.|..    +|.+.. ..+
T Consensus        64 ~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~-~~~  142 (512)
T 1zvo_C           64 SLRGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFP-IIS  142 (512)
T ss_pred             ccCCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEe-ccC
Confidence            124678776543 3568999999999999999999976421              12345677763    222221 111


Q ss_pred             CceeecCCCcEEEEEEEccc-cCC-eEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY-PTP-KITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .......++.+.|.|.+.|. |.| .+.|++++......... ....... ....+.|.|.....+ .|.|+|.|.|..+
T Consensus       143 ~~~~~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~-~~~~s~L~i~~~~~~-~g~ytC~v~n~~~  220 (512)
T 1zvo_C          143 GCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSY-YMTSSQLSTPLQQWR-QGEYKCVVQHTAS  220 (512)
T ss_pred             CcccccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCC-EEEEEEEEEcHHHcC-CceEEEEEEeCCC
Confidence            11101235889999999885 766 89999843221110000 0000011 112235777776666 8999999999987


Q ss_pred             CC
Q psy7941         223 PT  224 (238)
Q Consensus       223 ~~  224 (238)
                      ..
T Consensus       221 ~~  222 (512)
T 1zvo_C          221 KS  222 (512)
T ss_pred             Cc
Confidence            43

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.71  E-value=3e-16  Score=126.45  Aligned_cols=169  Identities=15%  Similarity=0.194  Sum_probs=100.7

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-c-eEEEEeCCceeeeeeeeeEe-ecCccEEEEEcCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-M-KVAWIKADTKAVLAIHEHVI-TNNARLSVTHNDA   97 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   97 (238)
                      .+|+.+.|.|.+.+.                         .|. + .+.|++++............ ..++.+....   
T Consensus       139 ~~g~~v~L~C~~~g~-------------------------~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s---  190 (475)
T 1iga_A          139 QPDGNVVIACLVQGF-------------------------FPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSS---  190 (475)
T ss_pred             CCCCeEEEEEEEeee-------------------------cCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEE---
Confidence            589999999998642                         123 3 79999976432111111111 1233444432   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc--------------------CCcccccccCCceeecCCCcEE
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI--------------------PPDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~~g~~~~  157 (238)
                         .|.|.++..+|+|.|+|.+.+.........+.+.+                    +|.+... .+....+.+|+.+.
T Consensus       191 ---~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~~~~G~~v~  266 (475)
T 1iga_A          191 ---QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLH-RPALEDLLLGSEAN  266 (475)
T ss_pred             ---EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEc-CCChHHhccCCceE
Confidence               78899998899999999998765433233333111                    2222111 11222257899999


Q ss_pred             EEEEEccccC---CeEEEEeCCCeeeEeecCC-CCC-cceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         158 LVCKAKGYPT---PKITWRREDNKEIIVRSNP-PSS-QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       158 l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      |.|.+.|.++   +.+.| . ++......... ... ... ....+.|.|..+..+|.|.|+|.|.|..|..
T Consensus       267 L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~-~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          267 LTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGC-YSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             EEEEEEcccCCCceEEEE-C-CCCcCCccccCceECCCCC-EEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            9999988644   59999 4 43322111000 000 001 1234479999999999999999999998843

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=9.5e-16  Score=111.63  Aligned_cols=177  Identities=14%  Similarity=0.182  Sum_probs=105.6

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-eeeee--eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-VLAIH--EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~~~~~--~~~~~   85 (238)
                      +...+..+.+.+|+++.|.|.+.+...                        ..+.+.||++..  .. .....  .....
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~------------------------~~~~v~W~rq~~g~~~~~l~~~~~~~~~~   59 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAI------------------------GNYYINWYRKTQGNTMTFIYREKDIYGPG   59 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCG------------------------GGSEEEEEEEESSSCSEEEEETTTEECTT
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCcc------------------------CcceEEEEEECCCCCcEEEEEcCCccCCC
Confidence            456788899999999999999863210                        024599998632  11 11110  01111


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC------C---cceeeEEEEEcCCcccccccCCceeecCCCc
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP------M---TKQMAFLEVVIPPDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~------~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~  155 (238)
                      ..+||.+... ....++|.|.+++.+|+|.|+|.+.+..      .   ....+.|.|........   ...+.+.. ..
T Consensus        60 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~---~P~v~~~~-~~  135 (229)
T 1hxm_A           60 FKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT---KPSVFVMK-NG  135 (229)
T ss_dssp             TTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB---CCEEEEEE-ET
T ss_pred             cCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc---CCcEEEcC-CC
Confidence            2578887754 4467899999999999999999997642      1   11234677764211111   11122211 23


Q ss_pred             EEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEee-cCCCeEEEEEeeeCCC
Q psy7941         156 AKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT-RSEMGAYQCIAANGVP  222 (238)
Q Consensus       156 ~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~n~~g  222 (238)
                      +.|.|.+.+ +|.+ .+.|.++  ..+....     .......++.+.+.... ..+.|.|+|.+.|..+
T Consensus       136 ~~L~C~~~g~~P~~i~v~W~~~--~~~~~~~-----~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          136 TNVACLVKEFYPKDIRINLVSS--KKITEFD-----PAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             TEEEEEEESCBSSCCEEEEECS--SEEEECC-----CEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred             CeEEEEEEEEeCCCEEEEEecC--CEEecCc-----cceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence            589999987 5665 8999995  4443211     11111222344443333 3678899999999875

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.70  E-value=9.7e-17  Score=124.08  Aligned_cols=180  Identities=16%  Similarity=0.259  Sum_probs=100.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+...+....+.+|+++.|.|.+.+.                         .|. +.+.|++++..+...........
T Consensus       120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~-------------------------~P~~~~v~W~k~g~~~~~~~~~~~~~~  174 (344)
T 1za6_B          120 GPSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPEPVTVSWNSGALTSGVHTFPAVLQS  174 (344)
T ss_dssp             CCEEEEECCSCTTTSSSEEEEEEEEEEE-------------------------BSSCCCEEETTTTBCTTEEECCCEECT
T ss_pred             CCeEEEccccccccCCCcEEEEEEEeeE-------------------------ECCCeEEEEecCCccCceeECCCeECC
Confidence            3444333323345689999999998642                         122 57999998765322111111223


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEE------------------------EEcCCcccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLE------------------------VVIPPDISS  141 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~------------------------v~~~~~~~~  141 (238)
                      ++++....      .|.|.+++.+| |.|+|.+.+..... ....+.                        +..+|.+..
T Consensus       175 ~~~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~  247 (344)
T 1za6_B          175 SGLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYT  247 (344)
T ss_dssp             TSCEEEEE------EEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEEEE
T ss_pred             CCCEEEEE------EEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEE
Confidence            44555443      89999998888 99999998754321 111121                        112333322


Q ss_pred             cccCCceeecCCCcEEEEEEEccc-c-CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGY-P-TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  217 (238)
                      .... .. ...|..+.|.|.+.|. | .+.+.|+++ +..+........  ...-.......|.+.....+|.|.|+|.|
T Consensus       248 ~~~~-~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~-g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a  324 (344)
T 1za6_B          248 LPPS-RD-ELTKNQVSLTCLVKGFYPSDIAVEWESN-GQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV  324 (344)
T ss_dssp             ECCC-GG-GGGSSSEEEEEEEEEEBSSCCEEEEESS-SSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEE
T ss_pred             eCCC-hH-hccCCcEEEEEEEeeEECCCeEEEEEEC-CeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEE
Confidence            2111 11 2235669999999984 4 358999994 443321110000  00000111224555555567799999999


Q ss_pred             eeCCC
Q psy7941         218 ANGVP  222 (238)
Q Consensus       218 ~n~~g  222 (238)
                      .|...
T Consensus       325 ~~~~l  329 (344)
T 1za6_B          325 MHEAL  329 (344)
T ss_dssp             ECTTS
T ss_pred             EcCCC
Confidence            99775

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.69  E-value=8.7e-17  Score=128.97  Aligned_cols=176  Identities=15%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC-ceEEEEeCCceeeeeeeeeEeecC
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA-MKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      |.+...+....+.+|+++.|.|.+.+.                         .|. +.+.|++++..............+
T Consensus       133 P~i~~~~~~~~~~~g~~v~L~C~~~g~-------------------------~P~~~~v~W~k~~~~~~~~~~~~~~~~~  187 (457)
T 1hzh_H          133 PSVFPLAPSSKSTSGGTAALGCLVKDY-------------------------FPEPVTVSWNSGALTSGVHTFPAVLQSS  187 (457)
T ss_dssp             CEEEEECCCSCCCTTCCEEEEEEEESB-------------------------BSCCCEEEETTTTBCTTEEEEEEEECTT
T ss_pred             CeEEecCccccccCCCcEEEEEEEeEE-------------------------eCCCeEEEEEeCCEeccceEcCceECCC
Confidence            443333333345789999999999742                         122 579999987543222222222334


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEEEc-----------------CCcccccccCCce-
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVVI-----------------PPDISSEETSGDM-  148 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~-----------------~~~~~~~~~~~~~-  148 (238)
                      +++....      .|.|.++..+| |.|+|.+.+..... ....+.+..                 +|.+... .+... 
T Consensus       188 ~~~~~~s------~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~-~p~~~~  259 (457)
T 1hzh_H          188 GLYSLSS------VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLF-PPKPKD  259 (457)
T ss_dssp             SCEEEEE------EEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEE-CCCHHH
T ss_pred             CCEEEEE------EEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeE-CcCchh
Confidence            4554433      89999999999 99999998753321 122222211                 1222111 11111 


Q ss_pred             eecCCCcEEEEEEEccccCC----eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEE---eecCC---CeEEEEEee
Q psy7941         149 MVPEGGSAKLVCKAKGYPTP----KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTK---VTRSE---MGAYQCIAA  218 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~  218 (238)
                      .+..|+.+.|.|.+.|.|++    .+.|++ ++..+.....    .......++.+.+..   +...|   .|.|+|.|.
T Consensus       260 ~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k-~~~~~~~~~~----~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~  334 (457)
T 1hzh_H          260 TLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKT----KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVS  334 (457)
T ss_dssp             HHCTTSCCCEEEEEECCCTTCCCCEEEEEE-TTEEECCCEE----EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEE
T ss_pred             hcccCCceEEEEEEEcccCCCCceEEEEEe-CCcccccccc----ccceecCCCcEEEEEEEEECHHHccCCCcEEEEEe
Confidence            15679999999999997543    999999 4443321100    000111222333332   22444   999999999


Q ss_pred             eCCC
Q psy7941         219 NGVP  222 (238)
Q Consensus       219 n~~g  222 (238)
                      |..+
T Consensus       335 n~~~  338 (457)
T 1hzh_H          335 NKAL  338 (457)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.69  E-value=1.6e-16  Score=101.68  Aligned_cols=96  Identities=26%  Similarity=0.417  Sum_probs=72.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      +.+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|+|++..+.         
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~--------------------------G~P~p~v~W~k~g~~l~---------   55 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVL--------------------------GEPPPVVVWEKGGQQLA---------   55 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECC---------
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEE--------------------------EecCCEEEEEECccccc---------
Confidence            4579999999999999999999999995                          34577899999876543         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPP  137 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~  137 (238)
                      .+.++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|
T Consensus        56 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           56 ASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             CCSSEECCEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             ceeeEEEeec-CceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            2344444332 234589999999999999999998863 34556677777654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.67  E-value=1.1e-17  Score=133.34  Aligned_cols=170  Identities=10%  Similarity=0.126  Sum_probs=101.9

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      .+.+|+.+.|.|.+.+.                         .|.+ .+.|++++........... ...+++....   
T Consensus       130 ~~~~G~~v~L~C~~~g~-------------------------~P~p~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~s---  180 (434)
T 1igy_B          130 AAQTNSMVTLGCLVKGY-------------------------FPEPVTVTWNSGSLSSGVHTFPAV-LQSDLYTLSS---  180 (434)
T ss_dssp             CCCCTTEEEEEEEEEEE-------------------------BSSCCEEEETTTTBCSSEEECCCE-ECSSCEEEEE---
T ss_pred             ccCCCCcEEEEEEEeee-------------------------cCCCeEEEEeeCCcCCCeEecCce-ecCCcEEEEE---
Confidence            35789999999999642                         1333 7999998764321111111 1123444332   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEEc---------C---CcccccccCCcee-ecCCCcEEEEEEEc
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVVI---------P---PDISSEETSGDMM-VPEGGSAKLVCKAK  163 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~---------~---~~~~~~~~~~~~~-~~~g~~~~l~C~~~  163 (238)
                         .|.|.+++.+| |.|+|.+.+.... .....+.+..         .   |.+... .+.... +..|+.+.|.|.+.
T Consensus       181 ---~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~-~p~~~~~v~~G~~~~L~C~~~  255 (434)
T 1igy_B          181 ---SVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF-PPKPKDTLLITVTPKVTCVVV  255 (434)
T ss_dssp             ---EEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEE-CCCHHHHHSTTSCCEEEEEEC
T ss_pred             ---EEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEe-CCChHHhcccCCCcEEEEEEe
Confidence               79999999889 9999999876432 2222222210         0   222111 111111 77899999999999


Q ss_pred             ccc----CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         164 GYP----TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       164 ~~p----~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      |.+    .+.+.|++++.. +........  .........+.|.|..+..+|.|.|+|.|.|..|.
T Consensus       256 g~~p~P~~~~i~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  320 (434)
T 1igy_B          256 DISKDDPEVQFSWFVDNVE-VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP  320 (434)
T ss_dssp             CCCSSCCCCCBCBBSSSCC-BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCS
T ss_pred             ccccCCCCeEEEEEeCCcc-cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCC
Confidence            873    348999995533 321110000  00000112346899999999999999999999884

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=1.5e-16  Score=101.79  Aligned_cols=88  Identities=20%  Similarity=0.301  Sum_probs=66.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....   ...........|.|.++..+|+|.|+|.|.|..|..
T Consensus        20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k-~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   95 (107)
T 3knb_B           20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQLAASER---LSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEA   95 (107)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCSS---EECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEeCCCcEEEEEEEEEecCCEEEEEE-Ccccccceee---EEEeecCceEEEEEecCChhhCEEEEEEEEECCCEE
Confidence            455778899999999999999999999999 5555532211   001111123379999999999999999999999954


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                       +.++.|.|..+|
T Consensus        96 -~~~~~l~V~~pP  107 (107)
T 3knb_B           96 -YAAAAVTVLEPP  107 (107)
T ss_dssp             -EEEEEEEEEC--
T ss_pred             -EEEEEEEEEcCC
Confidence             788999999887

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=119.31  Aligned_cols=180  Identities=13%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             eccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCcc
Q psy7941          12 LYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNAR   89 (238)
Q Consensus        12 ~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~   89 (238)
                      +.++.... +..|+++.|.|.+.+....+                      +...|.|+++++....... ......+++
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p----------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~  228 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDD----------------------PEVQFSWFVDDVEVHTAQTQPREEQFNST  228 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCC----------------------CccEEEEEECCccccCcccCCCCcccCCc
Confidence            34444444 78999999999987431000                      1236999998855321110 001112233


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEE----EEEcCCcccccccCCceeecCCCcEEEEEEEcc
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFL----EVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG  164 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l----~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  164 (238)
                      +....      .|.|.+++.+|.|.|+|.+.+... ......+    .+..+|.+......  .....|+.+.|.|.+.|
T Consensus       229 ~~~~s------~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g  300 (376)
T 2aty_A          229 FRSVS------ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITD  300 (376)
T ss_pred             EEEEE------EEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEE
Confidence            33322      799999999999999999977533 2222222    23345554432222  22345888999999998


Q ss_pred             -cc-CCeEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         165 -YP-TPKITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       165 -~p-~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                       +| ...|+|++ ++..+........  ...-.......|.+.....+|.|.|+|.|.|...
T Consensus       301 ~~P~~i~v~W~k-~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          301 FFPEDITVEWQW-NGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             eECCCcEEEEEE-CCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence             44 34899999 5544321111000  0000111223566666666788999999999875

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.66  E-value=4.6e-16  Score=114.02  Aligned_cols=182  Identities=17%  Similarity=0.265  Sum_probs=102.9

Q ss_pred             ccceeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeee-eEe
Q psy7941           8 EPDFLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHE-HVI   84 (238)
Q Consensus         8 ~p~~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~-~~~   84 (238)
                      ++.++.++.... +..|+++.|.|.+.+...                       .| ...+.|++++..+...... ...
T Consensus        23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p-----------------------~P~~i~v~W~k~g~~l~~~~~~~~~~   79 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSH-----------------------EDPEVKFNWYVDGVEVHNAKTKPREE   79 (240)
T ss_dssp             CEEEEECCCHHHHHSSSSCCEEEEEEESCCC-------------------------CCCEEEEEETTEEECCCEECCCEE
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEecccc-----------------------CCCccEEEEEECCcccCCceeccceE
Confidence            334445555555 557999999999975320                       01 3469999987665322111 111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEE----EEcCCcccccccCCceeecCCCcEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLE----VVIPPDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~----v~~~~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ..+++|....      .|.|.....+|.|.|+|++.+... ......+.    +..+|.+......  .....|+.+.|.
T Consensus        80 ~~~g~~~~~s------~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~--~~~~~g~~~~L~  151 (240)
T 4acp_A           80 QYNSTYRVVS------VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS--RDELTKNQVSLT  151 (240)
T ss_dssp             C---CEEEEE------EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC--GGGGGSSEEEEE
T ss_pred             CCCCeEEEEE------EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC--hHHhcCCceEEE
Confidence            2244555543      788887778889999999987643 22222222    2234444332211  112238899999


Q ss_pred             EEEcc-ccCC-eEEEEeCCCeeeEeecCCC---CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         160 CKAKG-YPTP-KITWRREDNKEIIVRSNPP---SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       160 C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      |.+.+ +|.+ .+.|++ ++..+.......   ..... ....+.|.+......+.|.|+|.+.|..-
T Consensus       152 C~~~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~dgt-~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          152 CLVKGFYPSDIAVEWES-NGQPENNYKATPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEEBSSCCEEEEEE-TTEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEeEEeCCCcEEEEEE-CCEECCCcCccCceECCCCC-EEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            99998 6665 899999 444432111000   00111 11223466655555678999999999764

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=112.77  Aligned_cols=178  Identities=16%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeee------eEe
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHE------HVI   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~------~~~   84 (238)
                      +..+.+.+|+++.|.|.+....                        .....+.||+.....    ......      ...
T Consensus        30 ~~~~~~~~G~~v~L~C~~s~~~------------------------~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~   85 (267)
T 3u1s_H           30 SGAEVKKPGSSVKVSCKASGNS------------------------FSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQ   85 (267)
T ss_dssp             CCCEEECTTCCEEEEEEEGGGG------------------------GGTSEEEEEEECTTSCCEEEEEECTTSSCEEECG
T ss_pred             eCCEEEeCCCcEEEEEEeeCCc------------------------cCCCEEEEEEECCCCCcEEEEEEeCCCCceecCc
Confidence            3457899999999999986321                        012459999853211    111100      011


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec-------CC-------------------CcceeeEEEEEc--
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT-------NP-------------------MTKQMAFLEVVI--  135 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~-------~~-------------------~~~~~~~l~v~~--  135 (238)
                      ...+|+.+.... ...++|.|.+++.+|+|.|+|.+.+       ..                   .....+.+.|..  
T Consensus        86 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~  165 (267)
T 3u1s_H           86 KFQGRVTITRDSGASTVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS  165 (267)
T ss_dssp             GGTTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC
T ss_pred             ccCCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC
Confidence            124688876544 3678999999999999999999851       11                   011234466642  


Q ss_pred             --CCcccccccCCceeecCCCcEEEEEEEcc-cc-CCeEEEEeCCCeee---EeecCCCCCcceEEEeeceEEEEEeecC
Q psy7941         136 --PPDISSEETSGDMMVPEGGSAKLVCKAKG-YP-TPKITWRREDNKEI---IVRSNPPSSQKVFSVESEVLSLTKVTRS  208 (238)
Q Consensus       136 --~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~  208 (238)
                        +|.+...  ........|+.+.|.|.+.+ +| .+.+.| . +....   ............ ....+.|.+.....+
T Consensus       166 ~~~P~v~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-~-~~~~~~~~~~~~~~~~~~g~-y~~~s~L~i~~~~~~  240 (267)
T 3u1s_H          166 TKGPSVFPL--APSSKSTSGGTAALGCLVKDYFPEPVTVSW-N-SGALTSGVHTFPAVLQSSGL-YSLSSVVTVPSSSLG  240 (267)
T ss_dssp             CBCCEEEEE--CCCGGGEETTEEEEEEEEEEEBSSCCEEEE-G-GGTBCTTEEECCCEECTTSC-EEEEEEEEEEGGGGG
T ss_pred             CCCCEEEEe--cCCcccCCCCcEEEEEEEeEEECCCeEEEE-C-CcccCCCEEeCCceECCCCC-EEEEEEEEECchhcC
Confidence              2222211  11112346889999999987 56 458999 3 32211   100000000111 112235778777777


Q ss_pred             CCeEEEEEeeeCCC
Q psy7941         209 EMGAYQCIAANGVP  222 (238)
Q Consensus       209 d~G~y~C~~~n~~g  222 (238)
                      | +.|+|.+.|..+
T Consensus       241 ~-~~ytC~v~h~~~  253 (267)
T 3u1s_H          241 T-QTYICNVNHKPS  253 (267)
T ss_dssp             T-CCCEEEEEEGGG
T ss_pred             C-CEEEEEEEECCC
Confidence            8 999999999875

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-14  Score=118.07  Aligned_cols=192  Identities=16%  Similarity=0.190  Sum_probs=111.2

Q ss_pred             ccce-eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe
Q psy7941           8 EPDF-LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI   84 (238)
Q Consensus         8 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~   84 (238)
                      +|.+ +.++....+..|+++.|.|.+.+..+.                        ...+.|++++........  ....
T Consensus       296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~------------------------~~~i~W~k~g~~~~~~~~~~~~~~  351 (512)
T 1zvo_C          296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLK------------------------DAHLTWEVAGKVPTGGVEEGLLER  351 (512)
T ss_pred             CCEEEEECCChHHhccCCceEEEEEEeceECC------------------------CeEEEEEECCEeccCceeccceec
Confidence            3444 344444556789999999999743111                        237999998765331111  1111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE------EcCCcccccccCCceeecCCCcEE-
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV------VIPPDISSEETSGDMMVPEGGSAK-  157 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v------~~~~~~~~~~~~~~~~~~~g~~~~-  157 (238)
                      ..+++|....      .|.|.....+|.|.|+|.+.+.........+..      ..+|.+......  .   .|+.+. 
T Consensus       352 ~~~gt~~~~s------~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--~---~~~~~~~  420 (512)
T 1zvo_C          352 HSNGSQSQHS------RLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASS--D---PPEAASW  420 (512)
T ss_pred             CCCCeEEEEE------EEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccC--c---CCCCceE
Confidence            2234454443      799999999999999999987643221222222      123333222111  1   688889 


Q ss_pred             EEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC-----CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-CccceE
Q psy7941         158 LVCKAKG-YPTP-KITWRREDNKEIIVRSNPP-----SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-TVSKRL  229 (238)
Q Consensus       158 l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-~~~~~~  229 (238)
                      |.|.+.| +|.. .+.|++ ++..+.......     ............|.+.....+|.|.|+|.|.|.... ......
T Consensus       421 L~C~~~g~~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~  499 (512)
T 1zvo_C          421 LLCEVSGFSPPNILLMWLE-DQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASR  499 (512)
T ss_pred             EEEEEeeeCCCCcEEEEEE-CCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEE
Confidence            9999998 4543 789999 555443211000     000000111224666666667799999999998753 445566


Q ss_pred             EEEEEe
Q psy7941         230 MLHVHC  235 (238)
Q Consensus       230 ~l~V~~  235 (238)
                      .|.|..
T Consensus       500 ~~~v~~  505 (512)
T 1zvo_C          500 SLEVSY  505 (512)
T ss_pred             EEEecc
Confidence            666654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.64  E-value=1e-15  Score=96.71  Aligned_cols=95  Identities=17%  Similarity=0.310  Sum_probs=70.8

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      +.+|.|...+..+.+.+|+++.|.|.+.                          +.|.|.++|++++..+...       
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~~~-------   49 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFT--------------------------GEPTPEVTWSCGGRKIHSQ-------   49 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEECCTT-------
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEE--------------------------EecCCEEEEEECceEeeee-------
Confidence            4689999999999999999999999995                          3457789999987654321       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ...++.+... ....+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus        50 ~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           50 EQGRFHIENT-DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             GGGTEEEEEC-SSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccceeeeecc-cceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            1335555443 2345899999999999999999988643 3445556554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.64  E-value=8.3e-17  Score=116.22  Aligned_cols=177  Identities=14%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCcc
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNAR   89 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~   89 (238)
                      ++..|..+.+.+|+++.|.|.+.+....                       ..+.+.| ++ ......... .....+++
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~-----------------------~~~~v~W-~~-~~~~~~~~~~~~~~~~g~   61 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRDA-----------------------SGVTFTW-TP-SSGKSAVQGPPERDLCGC   61 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCSC-----------------------CCCCCCB-SS-CSSCCCEECCCCCCSTTC
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeECC-----------------------CCeEEEE-cC-CCCCCcccCCceECCCCc
Confidence            3466777788999999999999642110                       0146999 43 322111100 00011222


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEE---EEcCCcccccccCCceeecCCCcEEEEEEEcc-
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLE---VVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-  164 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-  164 (238)
                      +.      ...+|.|.+++.+|+|.|+|.+.+.... ...+.+.   +..+|.+.... +....+..|..+.|.|.+.| 
T Consensus        62 ~~------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~  134 (214)
T 1ow0_A           62 YS------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLP-PPSEELALNELVTLTCLARGF  134 (214)
T ss_dssp             CC------EEEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEEC-CCTTTTTSSSEEEEEEEEEEE
T ss_pred             EE------EEEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecC-CCHHHhccCCceEEEEEEeee
Confidence            22      2238899999999999999999775432 2223332   12344443221 11123567888999999998 


Q ss_pred             ccC-CeEEEEeCCCeeeEeecCCCCCcceEEE---eec------eEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         165 YPT-PKITWRREDNKEIIVRSNPPSSQKVFSV---ESE------VLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       165 ~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~------~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +|. +.+.|++ ++..+.......  ......   .++      .|.+.....++.|.|+|.|.|...
T Consensus       135 ~P~~~~v~W~k-~g~~l~~~~~~~--~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          135 SPKDVLVRWLQ-GSQELPREKYLT--WASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             SSSCCEEEEEE-TTEECCGGGSEE--CCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             ECCCcEEEEEE-CCEECCCCceee--cCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            564 4999999 555443211000  000111   122      233333333457899999999875

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.64  E-value=8.4e-15  Score=113.31  Aligned_cols=133  Identities=20%  Similarity=0.294  Sum_probs=78.4

Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCC-cEEEEEEEcc-ccC--CeEEE
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGG-SAKLVCKAKG-YPT--PKITW  172 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~--~~~~W  172 (238)
                      ++.+|.|.+++.+|.|.|+|.+.+... ....+.|.|..+|.+...... ...+..|+ .+.|.|.+.+ +|.  +.++|
T Consensus       252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW  330 (401)
T 3f8u_B          252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFYPSGGLEVEW  330 (401)
T ss_dssp             EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred             CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence            567999999999999999999976532 334556788887776543221 11134565 7999999988 676  69999


Q ss_pred             E-eCC--CeeeEee-----cC-CCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCCccceEEEE
Q psy7941         173 R-RED--NKEIIVR-----SN-PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       173 ~-~~~--~~~~~~~-----~~-~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      . +++  +......     .. .......+ ...+.|.+.....++.| .|+|.+.|..-....++..++
T Consensus       331 ~~rdg~~g~~~~~~~~~~~s~~~~~~DGTy-svsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVt  399 (401)
T 3f8u_B          331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSV-SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVT  399 (401)
T ss_dssp             EEESSSSCSCEECCSEEEECCCEECTTSCE-EEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred             EecCCCCCceecccccccccccccCCCceE-EEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence            5 743  2222111     00 00001111 11223444443323444 999999998733334444443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=1e-14  Score=94.78  Aligned_cols=100  Identities=21%  Similarity=0.414  Sum_probs=77.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|+..+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..        
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~~~~~~~--------   58 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQIS--------------------------AIPPPKLFWKRNNEMVQF--------   58 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBC--------------------------CBSCCEEEEEETTEECCC--------
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEe--------------------------ccCCCEEEEEECCEECcC--------
Confidence            4579999999999999999999999985                          334668999998765422        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~  139 (238)
                      ...++.+.....+.++|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+|..
T Consensus        59 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             CBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCC
T ss_pred             CCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCC
Confidence            2356666655556679999999999999999999875 33455666777766543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.61  E-value=2.5e-14  Score=91.55  Aligned_cols=104  Identities=21%  Similarity=0.416  Sum_probs=74.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      ..|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..... ........
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~~~~~v~W~~~~~~~~~-~~~~~~~~   57 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQ--------------------------NDNTSLQWSNPAQQTLY-FDDKKALR   57 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESS--------------------------CSSCCEEEECTTCCEEE-ETTEECSC
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcC--------------------------CCccEEEEEcCCCceEE-EcCCcccc
Confidence            4678888899999999999999999963                          33567999997653222 11112223


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP  137 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~  137 (238)
                      +.|+.+........+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|
T Consensus        58 ~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           58 DNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             CTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred             cCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEcCCCcEEEEEEEEEcCC
Confidence            557777655556779999999999999999999874445556677777654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.60  E-value=2.3e-15  Score=95.14  Aligned_cols=85  Identities=21%  Similarity=0.414  Sum_probs=64.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....   ......  .....|.|.++..+|+|.|+|.|.|..|
T Consensus        12 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~~~---~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           12 PSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQ---GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             CSEEEEETTSEEEEEEEEEEESCCEEEEEE-TTEECCTTGG---GTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CceEeeeecc---ceeeeecccceEEEEEcCCCccCCEEEEEEEEECCC
Confidence            456788999999999999999999999999 5555432111   011111  1224799999999999999999999999


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                      .. +.++.|.|+
T Consensus        88 ~~-~~~~~l~V~   98 (100)
T 3knb_A           88 SD-SATVNIHIR   98 (100)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             EE-EEEEEEEEE
Confidence            44 788888886

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.59  E-value=1.9e-13  Score=96.05  Aligned_cols=179  Identities=15%  Similarity=0.161  Sum_probs=108.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...|+.+.|..|+++.|.|.+.-                         ..|. .+.|--.-.+...             
T Consensus         5 v~v~P~~~~V~~G~Sv~l~Cs~~c-------------------------~~p~-~~~~~t~l~~~~~-------------   45 (196)
T 3bn3_B            5 ADLQPRVAFVERGGSLWLNCSTNC-------------------------PRPE-RGGLETSLRRNGT-------------   45 (196)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECC-------------------------SSCS-EEEEECSSEEEEE-------------
T ss_pred             EEEcCCCcEEcCCCeEEEEEeCCC-------------------------CCCC-ccEEEEccCCeeE-------------
Confidence            345567788999999999999852                         2222 3666543222111             


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP  168 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  168 (238)
                         ..+.....+.|.+++ +|.+.|.|.+... ......+.|.|+.+|........ ...+..|+.++|.|.+.+ +|..
T Consensus        46 ---~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~  120 (196)
T 3bn3_B           46 ---QRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRA  120 (196)
T ss_dssp             ---EEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEEBCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGG
T ss_pred             ---ccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEecCCCcCEEccC-CccccCCCcEEEEEEeCCccCCC
Confidence               001111157888998 8888899998664 34455677888887775433222 123778999999999977 6765


Q ss_pred             e--EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC-------CCccceEEEEEEee
Q psy7941         169 K--ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP-------PTVSKRLMLHVHCT  236 (238)
Q Consensus       169 ~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g-------~~~~~~~~l~V~~~  236 (238)
                      .  +.|++ ++..+............. .....+.+ .+.++|.| .|+|.|.+..+       ...+....|.|...
T Consensus       121 ~L~i~wlk-g~~~l~~~~~~~~~~~~~-~~t~~~~~-~~~r~D~g~~~sC~A~l~l~~~G~~l~~~~s~p~~L~v~~~  195 (196)
T 3bn3_B          121 SLTLTLLR-GAQELIRRSFAGEPPRAR-GAVLTATV-LARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSL  195 (196)
T ss_dssp             GEEEEEEE-TTEEEEEEECTTSCTTCC-CEEEEEEE-ECCGGGTTCEEEEEEEEECGGGTSCEEEEECCCEECCEECC
T ss_pred             CcEEEEEe-CCEEeecccccccccccc-ceeEEEEE-eeeeccCCCeEEEEEEccCCccCCCccccccCCeEEEEeec
Confidence            4  89999 666554433211111100 01122333 35566767 99999998776       23345555666543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=108.55  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+..+.+..|+.+.|.|.+.+                          .|.+.+.|++++..+.         ...++.+.
T Consensus       110 ~~~~~~~~~g~~~~l~C~~~g--------------------------~p~p~i~W~~~~~~~~---------~~~~~~~~  154 (305)
T 2nzi_A          110 GMGAVHALRGEVVSIKIPFSG--------------------------KPDPVITWQKGQDLID---------NNGHYQVI  154 (305)
T ss_dssp             SSCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEESSSBCC---------SSSSCEEE
T ss_pred             ccccEEecCCCEEEEEEEECC--------------------------CCCCEEEEEECCEECC---------CCCcEEEE
Confidence            345677889999999999853                          3466799999765532         23344333


Q ss_pred             EcCCCeEEEEEcc-cCcccCeEEEEEEecCC-CcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE----------
Q psy7941          94 HNDANTWTLNIRS-VRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK----------  161 (238)
Q Consensus        94 ~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~----------  161 (238)
                      .. ....+|.|.+ ++.+|.|.|+|.+.|.. .....+.+.|...|......   ......++.+.|.|.          
T Consensus       155 ~~-~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~---~~~~~~~~~v~l~w~~p~~~g~~~i  230 (305)
T 2nzi_A          155 VT-RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV---KVSDVSRDSVNLTWTEPASDGGSKI  230 (305)
T ss_dssp             EC-SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEE---EEESCCSSCEEEEEECCSCCSBSCE
T ss_pred             Ec-CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCc---eeeeccCCEEEEEEcCCccCCCCce
Confidence            22 2234899999 99999999999998763 34455667777655432210   111123445555554          


Q ss_pred             ----EccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         162 ----AKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       162 ----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                          +...+.+...|...+                 ......+.|.++...+.|.|+|.|.|..|..
T Consensus       231 ~~y~v~~~~~~~~~w~~~~-----------------~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~  280 (305)
T 2nzi_A          231 TNYIVEKCATTAERWLRVG-----------------QARETRYTVINLFGKTSYQFRVIAENKFGLS  280 (305)
T ss_dssp             EEEEEEEEETTSCCEEEEE-----------------EESSSEEEECSCCSSCEEEEEEEEEETTEEC
T ss_pred             eEEEEEEecCCCCccEECc-----------------cccCceEEecCCCCCCeEEEEEEEEeCCccc
Confidence                333333333443311                 1124568899999999999999999999843

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.5e-14  Score=89.59  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=73.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+ +                           |.+.+.|+|++..+.         
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v-~---------------------------p~p~v~W~k~g~~l~---------   47 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI-S---------------------------ENIPGKWTKNGLPVQ---------   47 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC-S---------------------------SCCCEEEEETTEECC---------
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe-C---------------------------CCCeEEEEECCEECC---------
Confidence            457899999999999999999999998 3                           245699999876643         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                      .+.++.+... ....+|.|.+++.+|+|.|+|.+.|. .....+.|.|..+|.
T Consensus        48 ~~~r~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~-~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           48 ESDRLKVVQK-GRIHKLVIANALTEDEGDYVFAPDAY-NVTLPAKVHVISGPS   98 (100)
T ss_dssp             CCSSEEEEEC-SSEEEEEESSCCGGGCSEEEEEESSS-CCCEEEEEEEECCSC
T ss_pred             CCCcEEEEEe-CCEEEEEECCCChhhCEEEEEEEcCC-CeeEEEEEEEeCCCC
Confidence            2445555443 33458999999999999999999877 556778888887663

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-14  Score=93.39  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=79.4

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..        
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~g~~~~~--------   51 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVAT--------------------------GSPVPTILWRKDGVLVST--------   51 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCC--------------------------CSSCCEEEEEESSSBCCT--------
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECcC--------
Confidence            4578898899999999999999999985                          344678999997765421        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEG  153 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g  153 (238)
                      ...++......    +|.|.+++.+|+|.|+|.+.|... ....+.|.|..++.+.....+....+.+|
T Consensus        52 ~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           52 QDSRIKQLENG----VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             TSTTEEEEETT----EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             CCCeEEEccCC----EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence            23455544433    899999999999999999988633 44456688887665544444444444444

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=7.1e-14  Score=90.46  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=74.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|+|++..+.         .
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~i~W~k~~~~~~---------~   50 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTG--------------------------TQPITCTWMKFRKQIQ---------E   50 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEES--------------------------SSSCEEEEEESSSBCC---------C
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEc--------------------------CCCCEEEEEECCEECc---------C
Confidence            5788989999999999999999999963                          4577899999876542         2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDIS  140 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~  140 (238)
                      ..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|...|...
T Consensus        51 ~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           51 SEHMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             SSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             CCCEEEEEc-CCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCC
Confidence            335554432 234589999999999999999998763 34456677887665543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.57  E-value=4.8e-14  Score=92.69  Aligned_cols=109  Identities=16%  Similarity=0.307  Sum_probs=72.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...+..+.+.+|+++.|.|.+..                          .|.+.+.|++.++...... ......+.|+
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~--------------------------~p~~~v~W~~~~~~~~~~~-~~~~~~~~r~   56 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSL--------------------------RKNSSLQWLTPSGFTIFLN-EYPVLKNSKY   56 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCC--------------------------CTTCEEEEECTTSCEEEET-TEECSCSSCC
T ss_pred             ccCCCccEEEcCCCCEEEEeEEec--------------------------cCCCEEEEECCCCeEEEEe-ccccccCCcE
Confidence            456678899999999999999863                          3456799998766543211 1112245667


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSG  146 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~  146 (238)
                      .+.......++|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|.......+.
T Consensus        57 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~g~~~~~~~l~V~~~P~~~~~~~P~  112 (124)
T 3rbg_A           57 QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPS  112 (124)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEEESSSEEEEEEEEEEECC----------
T ss_pred             EEEeCCCCEEEEEECCCChHHCEEEEEEEEcCCCCcEEEEEEEEeCCCCCcccccC
Confidence            66554445679999999999999999999877445566778888877654433333

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.57  E-value=6.2e-14  Score=87.18  Aligned_cols=90  Identities=16%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|..++.++.+.+|+++.|.|.+..                           +.+.++|+|++..+.         
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~---------------------------~~~~v~W~k~g~~i~---------   46 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE---------------------------PDVHGQWKLKGQPLA---------   46 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS---------------------------SSCCCEEEETTEECC---------
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC---------------------------CCCeEEEEECCEECc---------
Confidence            45789999999999999999999999852                           135699999876543         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI  135 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~  135 (238)
                      .+.++.+... ....+|.|.+++.+|+|.|+|.+.|.   ...+.|.|..
T Consensus        47 ~~~~~~i~~~-g~~~~L~I~~v~~~D~G~Y~C~a~n~---~~sa~L~V~~   92 (93)
T 1waa_A           47 ASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAANT---KSAANLKVKE   92 (93)
T ss_dssp             CBTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEETTE---EEEEEEEEEC
T ss_pred             CCCCEEEEEE-CCEEEEEECCCChhhCEEEEEEECCC---cEEEEEEEEc
Confidence            2345554432 23448999999999999999999653   3455666653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=3.6e-14  Score=89.39  Aligned_cols=93  Identities=27%  Similarity=0.301  Sum_probs=69.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..         
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~g~~~~~---------   48 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVG--------------------------KPDPECEWYKNGVKIER---------   48 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC---------
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEE--------------------------eCCCEEEEEECCEECCC---------
Confidence            5788988999999999999999999863                          34667999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ..++..........+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           49 SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEe
Confidence            33444333334556899999999999999999987633 3444555554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=91.23  Aligned_cols=86  Identities=27%  Similarity=0.434  Sum_probs=67.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...     ........++.|.|.++..+|.|.|+|.|.|..|..
T Consensus        15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~   88 (100)
T 2edj_A           15 PANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGR-----DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGET   88 (100)
T ss_dssp             CCCEEEESSSEEEECCEEECSSCCEEEEEE-SSSEESSS-----CSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCC
T ss_pred             cCCEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECCCC-----CCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCE
Confidence            445678899999999999999999999999 44443211     112223345589999999999999999999999954


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                       +..+.|.|..+|
T Consensus        89 -~~~~~l~V~~~~  100 (100)
T 2edj_A           89 -SWSAVLDVTESG  100 (100)
T ss_dssp             -BCCEEEEEESCC
T ss_pred             -EEEEEEEEecCC
Confidence             888999998765

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.56  E-value=7.4e-13  Score=92.35  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=100.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      ...|+...|.+|+++.|.|.+...                         .|. .+.|...-.+...      ...     
T Consensus         3 ~v~P~~~~V~~G~Sv~l~Cs~~c~-------------------------~p~-~~~~~t~l~~~~~------~~~-----   45 (185)
T 1iam_A            3 SVSPSKVILPRGGSVLVTCSTSCD-------------------------QPK-LLGIETPLPKKEL------LLP-----   45 (185)
T ss_dssp             EEESSEEEEETTEEEEEEEEECSS-------------------------SCS-EEEEECSSCEEEE------CSS-----
T ss_pred             EEECCCcEEeCCCCEEEEEEccCC-------------------------CCc-cceEEeeCCCccE------ecc-----
Confidence            345667789999999999998522                         222 2566542211110      000     


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC-
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP-  168 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-  168 (238)
                          ..+...|.|.+++. | |.|.|.+... ......+.+.|..+|........ ...+.+|+.++|.|.+.| .|.+ 
T Consensus        46 ----~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~-~~~~~~G~~~tL~C~v~g~~P~~~  118 (185)
T 1iam_A           46 ----GNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKQLTLRCQVEGGAPRAQ  118 (185)
T ss_dssp             ----SSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEEEBCCSEEEECCC-CSEECTTSEEEEEEEEECCBCGGG
T ss_pred             ----CCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEEeCCCCCCEEccC-CccccCCCcEEEEEEcCCccCCCC
Confidence                11112688999984 4 9999999655 33455667888887775443322 234789999999999987 6665 


Q ss_pred             -eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         169 -KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       169 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                       .|+|++ ++..+...... . ..    .+..|.+ .+.++|.| .|+|.|.|..+
T Consensus       119 l~i~w~k-g~~~l~~~~~~-~-~~----~~~tl~~-~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          119 LTVVLLR-GEKELKREPAV-G-EP----AEVTTTV-LVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEEEE-TTEEEEEEECC-T-TT----EEEEEEE-ECCSSCSSCEEEEEEEEECG
T ss_pred             cEEEEEe-CCEEcccccCC-C-cc----ccEEEEE-eceeccCCCeEEEEEEecCc
Confidence             589999 66555433211 1 11    1113443 36667777 99999999876

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=5.1e-14  Score=90.53  Aligned_cols=99  Identities=19%  Similarity=0.249  Sum_probs=75.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..        
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~--------   51 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVA--------------------------GNPKPKIYWFKDGKQISP--------   51 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBC--------------------------CSSCCEEEEECSSCBCCT--------
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCC--------
Confidence            4578899899999999999999999985                          344678999997765421        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD  138 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~  138 (238)
                      ...++.+.....+..+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++.
T Consensus        52 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           52 KSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             TCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSC
T ss_pred             CCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCC
Confidence            2345655555455668999999999999999999876 3345556677776553

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.55  E-value=1.3e-14  Score=93.05  Aligned_cols=98  Identities=19%  Similarity=0.401  Sum_probs=61.0

Q ss_pred             EEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCC
Q psy7941         131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM  210 (238)
Q Consensus       131 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  210 (238)
                      +.+..+|.+..  .+....+..|+.+.|.|.+.|.|.+.+.|++++ ..+...     ........+..|.|.++..+|+
T Consensus         5 v~~~~~P~~~~--~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~   76 (108)
T 3kvq_A            5 VLERVAPTITG--NLENQTTSIGESIEVSCTASGNPPPQIMWFKDN-ETLVED-----SGIVLKDGNRNLTIRRVRKEDE   76 (108)
T ss_dssp             ------CCCBS--CCCCEEEETTCCEEEECBCC----CCEEEEESS-SBCCCB-----TTEEEETTTTEEEECSCCGGGC
T ss_pred             ECccCCCceec--CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECC-eEcccC-----CCeEEeCCCcEEEEeecCcccC
Confidence            44555666554  345577889999999999999999999999944 333211     1112223346899999999999


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|+|.|.|..|. ....+.|.|..+|
T Consensus        77 G~Y~C~a~n~~g~-~~~~~~l~V~~~~  102 (108)
T 3kvq_A           77 GLYTCQACSVLGC-AKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEEEEEC----C-EEEEEEEEEEC--
T ss_pred             EEEEEEEEeCCCc-eEEEEEEEEeCCC
Confidence            9999999999994 4788889888765

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=7.3e-14  Score=90.68  Aligned_cols=94  Identities=23%  Similarity=0.372  Sum_probs=69.4

Q ss_pred             CCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeE
Q psy7941         136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGA  212 (238)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~  212 (238)
                      +|.+..  .+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+....    .........   ..|.|.++..+|+|.
T Consensus        15 ~p~f~~--~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           15 APMFIY--KPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNT----DRISLYQDNTGRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             CCCBSS--CCCCEEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCCCB----TTEEEEECTTCEEEEEEEEECGGGCEE
T ss_pred             CCeEEe--CCCcEEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcCCC----CeEEEEeCCCCeEEEEECCCCcccCEE
Confidence            444433  3455788999999999999999999999999 554433211    111111111   279999999999999


Q ss_pred             EEEEeeeCCCCCccceEEEEEEeec
Q psy7941         213 YQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       213 y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |+|.|.|..|. .+..+.|.|..+|
T Consensus        88 Y~C~a~N~~G~-~~~~~~l~V~~~p  111 (116)
T 2kkq_A           88 YTVSAVNEAGV-TTCNTRLDVTARP  111 (116)
T ss_dssp             EEEEEEETTEE-EEEEEEEEEECCS
T ss_pred             EEEEEEcCCCe-EEEEEEEEEeCCC
Confidence            99999999994 4788899998876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.54  E-value=9.3e-15  Score=92.87  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             cCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE----EEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         151 PEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF----SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ..+..+.|.|.+.|.|.|.++|++ ++..+.....  ......    ....+.|.|.++..+|+|.|+|.|.|..|. .+
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k-~g~~l~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~   89 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKY--ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEE-TTEEECCCSS--EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEE-CCEECCCCCc--EeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-Ee
Confidence            457789999999999999999999 5555432210  000000    112335999999999999999999999994 48


Q ss_pred             ceEEEEEEeecC
Q psy7941         227 KRLMLHVHCTYL  238 (238)
Q Consensus       227 ~~~~l~V~~~p~  238 (238)
                      .++.|.|..+|.
T Consensus        90 ~~~~l~V~~~P~  101 (103)
T 1wwb_X           90 KQISAHFMGWPG  101 (103)
T ss_dssp             EEEEECCSCCCC
T ss_pred             EEEEEEECCCCC
Confidence            889999888773

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=6.4e-14  Score=88.40  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+..         
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~---------   48 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSG--------------------------LPAPDVSWYLNGRTVQS---------   48 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEE--------------------------ESCCEEEEEETTEEECC---------
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEe--------------------------eCCCEEEEEECCEECcC---------
Confidence            4788888899999999999999999853                          34667999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      ..+........+..+|.|.+++.+|+|.|+|.+.|... ....+.|.|..
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           49 DDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             CSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence            11122222233445899999999999999999987643 34455566653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=92.55  Aligned_cols=102  Identities=22%  Similarity=0.300  Sum_probs=74.3

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.|.+.++.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|+|++..+..    
T Consensus         7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~g~~l~~----   56 (115)
T 2cr6_A            7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISP--------------------------ANYEPVHWFLDKTPLHA----   56 (115)
T ss_dssp             CCCCSSCCEEEECCCEEEEETTSCEECCCEEES--------------------------TTCCSCEEEESSCEECC----
T ss_pred             EEEcCCCCeEeccCccEEEeCCCcEEEEEEEcC--------------------------CCCCccEEEECCEECCC----
Confidence            456666778999999999999999999999963                          34567999998765422    


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccc
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS  141 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~  141 (238)
                           +.++.+........+|.|.+++.+|+|.|+|.+   +.....+.|.|..+|.+..
T Consensus        57 -----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           57 -----NELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALRVTEKPSVFS  108 (115)
T ss_dssp             -----SSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE---TTEECCEEEEEECCSSCCS
T ss_pred             -----CCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE---CCeeEEEEEEEECCCceec
Confidence                 233333222233448999999999999999995   2334557888888776543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.53  E-value=3.2e-13  Score=101.35  Aligned_cols=173  Identities=17%  Similarity=0.246  Sum_probs=102.1

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV   92 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~   92 (238)
                      ..|+.+.|.+|+++.|.|.+...                         .|. .+.|.-.-.+..       ....     
T Consensus         4 v~P~~~~V~~G~sv~l~Cs~~c~-------------------------~p~-~~~~~t~l~~~~-------~~~~-----   45 (291)
T 1mq8_A            4 VSPSKVILPRGGSVLVTCSTSCD-------------------------QPK-LLGIETPLPKKE-------LLLP-----   45 (291)
T ss_dssp             EECSEEEECTTCEEEEEEEECCS-------------------------SCS-EEEEECSSCCCC-------CCCS-----
T ss_pred             EeCCccEEcCCCeEEEEEeCCCC-------------------------CCc-cceEEecCCCcc-------cccC-----
Confidence            45677899999999999998522                         222 367754211110       0000     


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC--
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP--  168 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--  168 (238)
                         +...-.|.|.+++..  |.|.|++...+. ....+.+.|..+|........ ...+.+|+.++|.|.+.+ +|..  
T Consensus        46 ---g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l  119 (291)
T 1mq8_A           46 ---GNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANL  119 (291)
T ss_dssp             ---CSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTE
T ss_pred             ---CCceEEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCc
Confidence               111115677787743  469999965533 344557888877765433222 134778999999999977 5655  


Q ss_pred             eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCC-------CccceEEEEEEeec
Q psy7941         169 KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPP-------TVSKRLMLHVHCTY  237 (238)
Q Consensus       169 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~-------~~~~~~~l~V~~~p  237 (238)
                      .|+|++ ++..+......  ..    .....+.+. +.++|.| .|+|.|.|..+.       ..++...|.|+++|
T Consensus       120 ~itW~k-g~~~l~~~~~~--~~----~~~~~l~~~-~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P  188 (291)
T 1mq8_A          120 TVVLLR-GEKELKREPAV--GE----PAEVTTTVL-VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP  188 (291)
T ss_dssp             EEEEES-SSSEEEEEECC--BT----TEEEEEECC-CSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----
T ss_pred             EEEEEE-CCEEeecccCC--CC----CceEEEEee-eeeccCCceEEEEEEecCCccCCccccccccceEEEEEecC
Confidence            599999 55555433211  00    012234444 3445555 999999997652       24677888998876

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=1.8e-13  Score=87.64  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCC---ceEEEEeCCceeeeeeeee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSA---MKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~W~~~~~~~~~~~~~~   82 (238)
                      +..|.|...|..+.+.+|+++.|.|.+.+                          .|.   +.+.|+|++.....     
T Consensus         2 ~p~p~f~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~~~~p~v~W~k~~~~~~~-----   50 (108)
T 3cx2_A            2 DPIGLFVMRPQDGEVTVGGSITFSARVAG--------------------------ASLLKPPVVKWFKGKWVDLS-----   50 (108)
T ss_dssp             CCCCSCSBCCCCEEEETTCCEEEEEEEEC--------------------------C-CCSCCEEEEEETTTEEGG-----
T ss_pred             CCccEEEeCCCcEEEeCCCCEEEEEEECC--------------------------CccCCCcEEEEccCCccccc-----
Confidence            46789999999999999999999999963                          234   67999996521110     


Q ss_pred             EeecCccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          83 VITNNARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        83 ~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                       .....++.+...     .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus        51 -~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           51 -SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             -GGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             -ccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence             001223333210     11245899999999999999999987643 3445556553

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=7e-14  Score=90.51  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....     .....  .....|.|.++..+|+|.|+|.|.|..|
T Consensus        14 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   87 (114)
T 2cqv_A           14 PEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESE-----HMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   87 (114)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSS-----SEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CCCeEEeCCCeEEEEEEEEcCCCCEEEEEEC-CEECcCCC-----CEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCC
Confidence            4557789999999999999999999999994 44332111     11111  1145799999999999999999999999


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . .+..+.|.|..+|
T Consensus        88 ~-~~~~~~l~V~~~p  101 (114)
T 2cqv_A           88 S-RQAQVNLTVVDKP  101 (114)
T ss_dssp             E-EECCEEEEEECSC
T ss_pred             c-EEEEEEEEEECCC
Confidence            4 4778899998755

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.2e-14  Score=90.11  Aligned_cols=99  Identities=19%  Similarity=0.323  Sum_probs=73.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+..        
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~--------   52 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSG--------------------------LPTPDLSWQLDGKPVRP--------   52 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEEC--------------------------SSCCEEECBBSSSBCCC--------
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence            45889999999999999999999999953                          34668999998765432        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDI  139 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~  139 (238)
                       ..+...........+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..++..
T Consensus        53 -~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           53 -DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             -CSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCS
T ss_pred             -CCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCC
Confidence             2222222223345589999999999999999998753 3455667888766543

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.52  E-value=2e-13  Score=97.86  Aligned_cols=168  Identities=17%  Similarity=0.240  Sum_probs=101.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeee-eeeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLA-IHEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~-~~~~~~   84 (238)
                      .+...+..+.+.+|+++.|.|.+....                          ...+.||++...    .+.. ......
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~   58 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSP--------------------------FSNLRWYKQDTGRGPVSLTIMTFSENT   58 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSS--------------------------CCEEEEEEECTTSCCEEEEEEETTCSE
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCC--------------------------CCeEEEEEeCCCCCCEEEEEEecCCCC
Confidence            455668889999999999999986432                          235999996421    1111 110111


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC----C--cceeeEEEEEcCC---cccccccCCceeecCCC
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP----M--TKQMAFLEVVIPP---DISSEETSGDMMVPEGG  154 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----~--~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~  154 (238)
                      ...+||.+.. .....++|.|.+++.+|+|.|+|.+.+..    .  ....+.|.|....   .+.+....     ....
T Consensus        59 ~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~-----~~~~  133 (210)
T 2eys_A           59 KSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLR-----DSKS  133 (210)
T ss_dssp             EEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEEC-----CCSS
T ss_pred             ccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecC-----CCCC
Confidence            2357888764 34567899999999999999999997632    1  1123457775421   11111000     1122


Q ss_pred             cEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         155 SAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       155 ~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+.|.|.+.|. |...+.+.. +             ..........|.+..+...+.|.|.|.+.|..+
T Consensus       134 ~~tl~Cl~~gf~P~~~v~~~~-~-------------~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~  188 (210)
T 2eys_A          134 SDKSVCLFTDFDSQTNVSQSK-D-------------SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA  188 (210)
T ss_dssp             SSCEEEEEESCCTTCCCCCCS-S-------------TTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred             CceEEEEcccccCCcEecccc-C-------------cceEccCchhcchhcccccccchhhccCCCceE
Confidence            68999999884 444442221 1             111112233566666677788999999888664

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=8.1e-14  Score=90.79  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      .....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.. .   ............|.|.++..+|+|.|+|.|.|..| .
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~-~---~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~  104 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPLDT-S---RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM-K  104 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCC-S---SCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSC-E
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEE-CCEECCC-C---cEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCC-e
Confidence            355678899999999999999999999999 5554421 0   11111111234599999999999999999999999 4


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      .+..+.|.|..+|
T Consensus       105 ~~~~~~l~V~~~P  117 (118)
T 2e7c_A          105 DTATIRIRVVEKA  117 (118)
T ss_dssp             ECCEEEEEEECCC
T ss_pred             EEEEEEEEEEcCC
Confidence            5889999998877

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1e-13  Score=87.52  Aligned_cols=93  Identities=24%  Similarity=0.341  Sum_probs=68.7

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+..        
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~--------   51 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATG--------------------------DPLPVISWLKEGFTFPG--------   51 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEEC--------------------------SSCCEEEEEESSSEESS--------
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence            35788888899999999999999999963                          44677999998765431        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP  136 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~  136 (238)
                      ...++.....    .+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..+
T Consensus        52 ~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           52 RDPRATIQEQ----GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             SCSSCEECTT----CCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             CCCCEEEcCC----CEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence            1233332221    27999999999999999999875 44455666777654

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.52  E-value=8.8e-14  Score=87.77  Aligned_cols=87  Identities=24%  Similarity=0.439  Sum_probs=66.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....    .........  ..|.|.++..+|+|.|+|.|.|..|
T Consensus        12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (100)
T 2kdg_A           12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDD----LHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG   86 (100)
T ss_dssp             CCCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCS----SSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCC----cEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            445678899999999999999999999999 555443221    111112222  3799999999999999999999999


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . .+.++.|.|...|
T Consensus        87 ~-~~~~~~l~V~~~e  100 (100)
T 2kdg_A           87 E-ATFTVQLDVLAKE  100 (100)
T ss_dssp             E-EEEEEEEEEECCC
T ss_pred             e-EEEEEEEEEEecC
Confidence            5 4888888887653

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.51  E-value=4.6e-13  Score=90.45  Aligned_cols=104  Identities=17%  Similarity=0.340  Sum_probs=74.3

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      ..|...+..+.+.+|+++.|.|.+..                          .+.+.+.|++.+...+.. .........
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~--------------------------~~~~~i~W~~~~~~~i~~-~~~~~~~~~   91 (145)
T 1z9m_A           39 DDSQPWTSDETVVAGGTVVLKCQVKD--------------------------HEDSSLQWSNPAQQTLYF-GEKRALRDN   91 (145)
T ss_dssp             CTTCCBCCCEEEETTSCEEEEEECSC--------------------------CTTCCEEEECTTCCEEEE-TTEECSCCT
T ss_pred             cceecCCceEEEEcCCCEEEEEEEcC--------------------------CCCcEEEEECCCCcEEEE-CCceecccC
Confidence            45567788899999999999999853                          234569999765544322 111122346


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~  139 (238)
                      |+..........+|.|.+++.+|+|.|+|.+.+.+.....+.|.|..+|..
T Consensus        92 r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A           92 RIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             TEEEEEECSSEEEEEECSCCGGGCEEEEEEECSSSCEEEEEEEEEECCCC-
T ss_pred             CEEEecCCCCeEEEEECCCChhhCEEEEEEEEcCCCceEEEEEEEEeCCCC
Confidence            777665555677999999999999999999987744455667888776643

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=6.9e-14  Score=91.18  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             ccccCCceeecCCCcEEEEEEEccc---cCCeEEEEeCCCeeeEeecCCCCCcceE-------EEeeceEEEEEeecCCC
Q psy7941         141 SEETSGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDNKEIIVRSNPPSSQKVF-------SVESEVLSLTKVTRSEM  210 (238)
Q Consensus       141 ~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~  210 (238)
                      +...+..+.+.+|+.+.|.|.+.+.   |.|.|.|+++ +....... ........       ......|.|.++...|+
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kg-k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKG-KWMDLASK-AGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEES-SSCCHHHH-TTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeC-cCcccCCC-CCceEEEccccccccccceEEEEEccCCcccC
Confidence            3344566789999999999999764   8999999994 21110000 00000000       01245799999999999


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      |.|+|.|.|..|. .+.++.|.|+.
T Consensus        88 G~Y~Cevsn~~g~-~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKF-DSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCE-EEECCEEEEEC
T ss_pred             EEEEEEEEeCCCc-EEEEEEEEEEe
Confidence            9999999999984 58889999988

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.51  E-value=2e-14  Score=89.51  Aligned_cols=84  Identities=17%  Similarity=0.226  Sum_probs=62.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-CeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++ +..+...     ...........|.|.++..+|+|.|+|.|.|..| 
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-   82 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-----LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG-   82 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-----SEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE-
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-----EEEEecCCEEEEEECCCChhcCEEEEEEEEcCCC-
Confidence            34577899999999999999999999999954 1333210     0111112235799999999999999999999999 


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                      ..+.++.|.|+
T Consensus        83 ~~~~~~~l~V~   93 (93)
T 1wit_A           83 EDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEC
T ss_pred             eEEEEEEEEEC
Confidence            44777777763

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=86.53  Aligned_cols=93  Identities=17%  Similarity=0.295  Sum_probs=69.3

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+..         
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~i~W~k~~~~~~~---------   51 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQS--------------------------KPTAEVKWYHNGVELQE---------   51 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC---------
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEe--------------------------cCCCEEEEEECCEECCC---------
Confidence            4788999999999999999999999853                          34678999998765422         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI  135 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~  135 (238)
                      ..++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..
T Consensus        52 ~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           52 SSKIHYTNT-SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             CSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEC-CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEEC
Confidence            234444332 334589999999999999999998753 344455666654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=9.5e-14  Score=88.30  Aligned_cols=98  Identities=16%  Similarity=0.237  Sum_probs=72.9

Q ss_pred             CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941           3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .|...+|.|...+..+.+.+|+++.|.|.+....                         +++.+.|+|++..+.      
T Consensus         3 ~V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~-------------------------~~~~v~W~k~g~~i~------   51 (104)
T 2eny_A            3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHES-------------------------ASDPAMWTVGGKTVG------   51 (104)
T ss_dssp             CCCCCCCCCSBCCCCEEEESSCCEEEEEECSSCC-------------------------CSSCBCCBSSSSBCS------
T ss_pred             ccccCCCEEEecCCCcEEcCCCcEEEEEEEcCCC-------------------------CCceeEEEECCEECC------
Confidence            5677788999999999999999999999985321                         123699999876543      


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                         ...++.+... ....+|.|.+++.+|+|.|+|.+.+   ....+.|.|..+|.
T Consensus        52 ---~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~~---~~~~a~L~V~~~p~  100 (104)
T 2eny_A           52 ---SSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSVRG---LTSKASLIVRERSG  100 (104)
T ss_dssp             ---BCSSCEEEEE-TTEEEEEECSCCTTTCSCEEEEETT---EEEEECEEEECCCS
T ss_pred             ---CCCCEEEEEc-CCEEEEEECCCCHHHCEEEEEEECC---eeEEEEEEEeCCCc
Confidence               2335554432 2345899999999999999998844   24566788887664

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.51  E-value=1.9e-13  Score=86.05  Aligned_cols=94  Identities=22%  Similarity=0.380  Sum_probs=67.4

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+..        
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~k~~~~~~~--------   48 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQG--------------------------EPKPVVSWLRNRQPVRP--------   48 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEE--------------------------ESCCEEEEEETTEECCC--------
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEE--------------------------cCCCEEEEEECCEECCC--------
Confidence            35788988899999999999999999863                          34667999998765432        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ...++... ......+|.|.+++.+|+|.|+|.+.|... ....+.|.|.
T Consensus        49 ~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           49 DQRRFAEE-AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             BTTEEEEE-CGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEE-CCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEE
Confidence            12233322 223345899999999999999999987633 3344455553

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.51  E-value=2.2e-13  Score=93.06  Aligned_cols=99  Identities=20%  Similarity=0.338  Sum_probs=73.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+..|+++.|.|.+..                          .|.+.+.|+|++..+.         .
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g--------------------------~P~p~v~W~k~g~~~~---------~   84 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEG--------------------------YPDPEVMWFKDDNPVK---------E   84 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC---------C
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEE--------------------------ecCCEEEEEECCEECC---------C
Confidence            4788888889999999999999999853                          3466799999876532         2


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDIS  140 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~~  140 (238)
                      ..++.+........+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+.
T Consensus        85 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A           85 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEG  139 (154)
T ss_dssp             SSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred             CCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCC
Confidence            4455555444455699999999999999999998763 34556678888776554

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.51  E-value=1.7e-13  Score=85.31  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeeeeeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~~~~~~   85 (238)
                      +|.|..++..+.+.+|+++.|.|.+.                          +.|.|.+.|++++  ..+..        
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~--------   47 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAALAP--------   47 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEE--------------------------CCSSCEEEEECSTTTCBCST--------
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEE--------------------------EcCCCEEEEEECCCCcccCC--------
Confidence            68888888999999999999999995                          4567889999987  43211        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       ..++.  . .....+|.|.+++.+|+|.|+|.+.|...
T Consensus        48 -~~~~~--~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   82 (93)
T 1wit_A           48 -ELLVD--A-KSSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             -TSEEE--E-ETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             -cEEEE--e-cCCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence             11111  1 12234899999999999999999988643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.50  E-value=2.2e-13  Score=87.23  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             ccCCceeecCCCcEEEEEEEccccC---CeEEEEeCCCeeeEeecCCCCCcceE--------EEeeceEEEEEeecCCCe
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAKGYPT---PKITWRREDNKEIIVRSNPPSSQKVF--------SVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G  211 (238)
                      ..+..+.+..|+.+.|.|.+.|.|.   |.+.|++++.....  . ........        ......|.|.++..+|+|
T Consensus         9 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (108)
T 3cx2_A            9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS--S-KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (108)
T ss_dssp             BCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGG--G-GCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCE
T ss_pred             eCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccc--c-cCCceEEEeeEEecccccceEEEEEecCCCccCE
Confidence            3456678999999999999999988   99999994421110  0 00000000        012457999999999999


Q ss_pred             EEEEEeeeCCCCCccceEEEEEE
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|+|.|.|..|. .+.++.|.|.
T Consensus        86 ~Y~C~a~N~~G~-~~~~~~L~V~  107 (108)
T 3cx2_A           86 SYRCEVSTKDKF-DCSNFNLTVH  107 (108)
T ss_dssp             EEEEEEECSSCE-EEEEEEEEEE
T ss_pred             EEEEEEecCCCc-eEEEEEEEEe
Confidence            999999999994 4888888875

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.50  E-value=6.4e-13  Score=104.10  Aligned_cols=173  Identities=14%  Similarity=0.180  Sum_probs=108.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+...       .
T Consensus        99 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g--------------------------~p~~~i~W~~~g~~l~~~-------~  145 (389)
T 2jll_A           99 YAPKFISNQTIYYSWEGNPINISCDVKS--------------------------NPPASIHWRRDKLVLPAK-------N  145 (389)
T ss_dssp             EEEEECCSCCEEEECTTCCEEEEECEEE--------------------------ESCCEEEEEETTEESSCT-------T
T ss_pred             eCCEEecCcceEEeccCCEEEEEEEEEe--------------------------cCCCeEEEEECCccCCcc-------c
Confidence            3567766666667889999999999853                          346789999987654221       1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEc--
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAK--  163 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--  163 (238)
                      ..++.+.. .....+|.|.+++.+|+|.|+|.+.|... ......+.+...|.....   .......+..+.|.|...  
T Consensus       146 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~---~~~~~~~~~~~~l~w~~p~~  221 (389)
T 2jll_A          146 TTNLKTYS-TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG---VKIIELSQTTAKVSFNKPDS  221 (389)
T ss_dssp             CTTEEEEE-CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE---EEEEEECSSCEEEEEECCSC
T ss_pred             CceEEEec-cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc---eEEeeccCCEEEEEEeCCCC
Confidence            12343332 22344899999999999999999987643 333444555444432211   111223356788888742  


Q ss_pred             --cccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         164 --GYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       164 --~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                        +.|..  .+.|...+........        .......+.|..+...+.+.|+|.|.|..|..
T Consensus       222 ~~g~pi~~y~v~~~~~~~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~  278 (389)
T 2jll_A          222 HGGVPIHHYQVDVKEVASEIWKIVR--------SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG  278 (389)
T ss_dssp             CTTSCEEEEEEEEEETTCSCCEEEE--------CSTTCSEEEECSCCTTCEEEEEEEEEESSCBC
T ss_pred             CCCcceEEEEEEEEECCCcccEEee--------ccCCcceEEECCccCCCEEEEEEEEEcCCccC
Confidence              22332  5678774332111000        01122468889999999999999999999853

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.4e-13  Score=86.26  Aligned_cols=96  Identities=24%  Similarity=0.359  Sum_probs=72.4

Q ss_pred             CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      ..+.+|.|...+..+.+.+|+++.|.|.+.+                           |.+.+.|+|++..+.       
T Consensus         4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~---------------------------~~~~v~W~k~g~~~~-------   49 (103)
T 2edf_A            4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSR---------------------------AGTPVHWLKDRKAIR-------   49 (103)
T ss_dssp             SCCCCCCEEECCCCEEECTTSCEEECCEESS---------------------------SSCCCCEEESSCBCC-------
T ss_pred             CCCCCcEEEecCCccEEcCCCCEEEEEEEeC---------------------------CCCcEEEEECCEEcc-------
Confidence            3457889999999999999999999999863                           245699999876542       


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~  139 (238)
                        ...++.+.... ....|.|.+++.+|+|.|+|.+.|   ....+.|.|..+|..
T Consensus        50 --~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           50 --KSQKYDVVCEG-TMAMLVIRGASLKDAGEYTCEVEA---SKSTASLHVEEKASG   99 (103)
T ss_dssp             --CSSSEEEEEET-TEEEEEESSCCTTTCSEEEEECSS---CEEEEEEEECCCSSS
T ss_pred             --CCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEcc---CCcEEEEEEeCCCCC
Confidence              23355544432 245899999999999999999977   355667777766643

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.50  E-value=4.8e-13  Score=86.36  Aligned_cols=97  Identities=26%  Similarity=0.430  Sum_probs=72.4

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.|...+|.|...+..+.+.+|+++.|.|.+..                            .+.+.|+|++..+.     
T Consensus        13 l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~----------------------------~p~v~W~k~~~~l~-----   59 (113)
T 2edh_A           13 LTVRALPIKFTEGLRNEEATEGATAVLRCELSK----------------------------MAPVEWWKGHETLR-----   59 (113)
T ss_dssp             CCCCCSCCCEEECCCCCEECTTSCEEEEEEESS----------------------------CCCCEEEESSSBCC-----
T ss_pred             EEEEcCCCcccccCCceEEeCCCeEEEEEEECC----------------------------CCcEEEEECCEECC-----
Confidence            456667789998999999999999999999853                            13599999876542     


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~  139 (238)
                          ...++.+... .....|.|.+++.+|+|.|+|.+   +.....+.|.|..+|..
T Consensus        60 ----~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a---~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           60 ----DGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             ----CSSSEEEEEE-TTEEEEEECSCCSTTCEEEEEEE---TTEEEEEEEEECCCCCS
T ss_pred             ----CCCcEEEEEC-CCEEEEEECCCChhhCEEEEEEe---CCCCEEEEEEEeCCCCC
Confidence                2345555443 23458999999999999999999   33455667777765543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=7.9e-14  Score=90.84  Aligned_cols=86  Identities=24%  Similarity=0.414  Sum_probs=67.4

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.+.+.|++ ++..+..     .........++.|.|.++..+|+|.|+|.|.|..|. 
T Consensus        15 p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-   87 (118)
T 2eo9_A           15 PVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVST-----QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE-   87 (118)
T ss_dssp             CCCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCCT-----TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCE-
T ss_pred             CCCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcC-----CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCc-
Confidence            455778899999999999999999999999 4444321     112333445668999999999999999999999995 


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      ....+.|.|..+|
T Consensus        88 ~~~~~~l~V~~~~  100 (118)
T 2eo9_A           88 ATWSAYIEVQEFG  100 (118)
T ss_dssp             EEEECCEEEECCS
T ss_pred             EEEEEEEEEEeCC
Confidence            4677778887654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.49  E-value=2.4e-12  Score=93.25  Aligned_cols=163  Identities=15%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC---CceEEEEeCCceeeeeeeeeEeecCc
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS---AMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      ...|....+..|+.++|+|.+.+-                         .|   +..++|+|++....         .  
T Consensus         6 s~~P~~~~i~~GdsVTLTatVaGG-------------------------kP~pspyTYqWyKDG~~Is---------G--   49 (304)
T 3shs_A            6 SIQSNKRCFLAGDGFTLTATVAGD-------------------------EPLPSNLTYTWTKDDQPHE---------N--   49 (304)
T ss_dssp             EEEESCSSBCTTCCEEEEEEEEES-------------------------SSCCCCEEEEEEETTEECS---------C--
T ss_pred             EeCCCCccccCCCCEEEEEEecCC-------------------------CCCCCCceEEEEECCcccc---------C--
Confidence            344555567799999999998642                         23   33699999875421         0  


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc-eeeEEEEEcCCccc-ccccCCceeecCCCcEEEEEEE--cc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK-QMAFLEVVIPPDIS-SEETSGDMMVPEGGSAKLVCKA--KG  164 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~--~~  164 (238)
                               ....|.+..+...|+|.|+|.+.+..... ....+.|...+.+. ....+....+..+..+.|.+.+  .|
T Consensus        50 ---------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SG  120 (304)
T 3shs_A           50 ---------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG  120 (304)
T ss_dssp             ---------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETT
T ss_pred             ---------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccC
Confidence                     11188999999999999999997653322 22234444333221 1222444556677889999887  54


Q ss_pred             -cc-----CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccceEEEEEE
Q psy7941         165 -YP-----TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSKRLMLHVH  234 (238)
Q Consensus       165 -~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~~~~l~V~  234 (238)
                       .|     ..+++|++ ++..+.              ....+.+......+.|.|+|.+.|..+ ...+.++.+.+.
T Consensus       121 GtppA~~~~yTYQWyK-ngt~Is--------------gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~  182 (304)
T 3shs_A          121 GKTPADNYELHYSWSK-GEDVID--------------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA  182 (304)
T ss_dssp             SCCSSTTCCCEEEEEE-TTEEEE--------------SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred             CCCcccCCCceeEEee-CCeEcc--------------CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence             44     45999999 443332              122456666777899999999999876 455666655553

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.49  E-value=4.5e-14  Score=105.97  Aligned_cols=169  Identities=10%  Similarity=0.152  Sum_probs=48.4

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      ..+.+|+.++|+|.+.+..+..                       ...|.|||++..+....    .. ..        .
T Consensus        96 ~~~~~G~~~~LtC~v~g~~P~~-----------------------~l~itW~kg~~~l~~~~----~~-~~--------~  139 (291)
T 1mq8_A           96 SWQPVGKNLTLRCQVEGGAPRA-----------------------NLTVVLLRGEKELKREP----AV-GE--------P  139 (291)
T ss_dssp             SBCCSSCCCEEEEEECCCBSTT-----------------------TEEEEEESSSSEEEEEE----CC-BT--------T
T ss_pred             ccccCCCCEEEEEEecCccCCC-----------------------CcEEEEEECCEEeeccc----CC-CC--------C
Confidence            4477899999999997532211                       12589999876543221    00 01        1


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC---------cceeeEEEEEcCCcc-cccccCCceeecCCCcEEEEEEEccccC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM---------TKQMAFLEVVIPPDI-SSEETSGDMMVPEGGSAKLVCKAKGYPT  167 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~~~~~~l~v~~~~~~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~  167 (238)
                      ...+|.+......|.+.|+|++.+...         .+....|+|+++|.. .....+  ..+.+|+.+.|.|.+.|.|+
T Consensus       140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p--~~l~eG~~v~l~C~~~g~~P  217 (291)
T 1mq8_A          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFP  217 (291)
T ss_dssp             EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred             ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCC--cCccCCCeEEEEEEcCCCCC
Confidence            122666666666666799999976411         234456777776532 111112  25788999999999999654


Q ss_pred             C---eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEe---ecCC--CeEEEEEeeeCCCCCccceEEEEEEe
Q psy7941         168 P---KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV---TRSE--MGAYQCIAANGVPPTVSKRLMLHVHC  235 (238)
Q Consensus       168 ~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~y~C~~~n~~g~~~~~~~~l~V~~  235 (238)
                      +   .++|.+ ++..+....         ...+..+.+...   ..++  .+.|+|.+.+... .......|.|+.
T Consensus       218 ~~~~~v~w~~-~g~~l~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~l~v~~  282 (291)
T 1mq8_A          218 VSEAQVHLAL-GDQRLNPTV---------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIYS  282 (291)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CcccEEEEEE-CCEecCcee---------eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCc-ceEEEEEEEEEc
Confidence            4   699998 554443211         111122222222   3433  5577788887443 234555667765

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=87.59  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....     ......  ....|.|.++..+|+|.|+|.|.|..|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~   89 (103)
T 3qp3_A           16 RSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESS-----KIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE   89 (103)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCCS-----SEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cceEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCC-----CEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCc
Confidence            45678899999999999999999999999 554443211     111111  1236999999999999999999999994


Q ss_pred             CccceEEEEEEeec
Q psy7941         224 TVSKRLMLHVHCTY  237 (238)
Q Consensus       224 ~~~~~~~l~V~~~p  237 (238)
                      . +..+.|.|...+
T Consensus        90 ~-~~~~~l~V~~~~  102 (103)
T 3qp3_A           90 A-SDYATLDVTGGD  102 (103)
T ss_dssp             E-EEEEEEEEECC-
T ss_pred             E-EEEEEEEEECCC
Confidence            4 888888887654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=87.57  Aligned_cols=99  Identities=22%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             CCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941           3 PVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         3 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .+...+|.|...+..+.+.+|+++.|.|.+..                          .| +.+.|+|++..+...... 
T Consensus         3 sv~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~~-~~v~W~k~g~~i~~~~~~-   54 (101)
T 2edk_A            3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSE--------------------------EG-AQVMWMKNGVELTREDSF-   54 (101)
T ss_dssp             SSCCCCCCEEECCCCEEEESSCCCBCCEEESC--------------------------SS-CCCEEEESSCBCCCSCCS-
T ss_pred             ccccCCCEEEecCCceEEcCCCCEEEEEEEeC--------------------------CC-CEEEEEECCEECCCCCCc-
Confidence            35677899999999999999999999999853                          23 569999987654321100 


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP  137 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~  137 (238)
                          ..++.+.. ......|.|.+++.+|+|.|+|.+.+   ....+.|.|..+|
T Consensus        55 ----~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~P  101 (101)
T 2edk_A           55 ----KARYRFKK-DGKRHILIFSDVVQEDRGRYQVITNG---GQCEAELIVEEKQ  101 (101)
T ss_dssp             ----SCCCEEEE-CSSEEEEECSSCCGGGCSBEEEECSS---CEECCBEEEECCC
T ss_pred             ----ceeEEEEE-CCCEEEEEECCCChhhCEEEEEEEcC---CcEEEEEEEeCCC
Confidence                00444443 23345899999999999999999875   2344556666543

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-13  Score=87.75  Aligned_cols=103  Identities=24%  Similarity=0.311  Sum_probs=69.6

Q ss_pred             CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      +.+..+.|+..|+++.+.+|+++.|.|.+....+                       .|.|.|.|||+. .......   
T Consensus         8 ~~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~-----------------------~p~P~V~W~Kgk-~~~~~~~---   60 (118)
T 2edn_A            8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKEL-----------------------PDKPTIKWFKGK-WLELGSK---   60 (118)
T ss_dssp             CCCCSSSCSBCCCCCEEETTSCEECCEEEETTTS-----------------------SSCCCCEEEETT-TCCCCCS---
T ss_pred             ccCCcceEEECCCCeEEeCCCCEEEEEEEeccCC-----------------------CCCCcEEEeeCC-EeccCCC---
Confidence            4456778999999999999999999999974321                       247789999963 1111000   


Q ss_pred             eecCccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          84 ITNNARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        84 ~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                        ...++.+...     ....++|+|.+++.+|+|.|+|++.+... .+..+.|+|..
T Consensus        61 --~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           61 --SGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             --TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             --CccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence              0122222111     01245999999999999999999987643 44556677765

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.48  E-value=1e-13  Score=90.23  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=61.2

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE------EEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF------SVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      .+..+.|.|.+.|.|.|.++|++ ++..+.....  ......      ....+.|.|.++...|+|.|+|.|.|..|. .
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~k-nG~~l~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~   89 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSF--IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-A   89 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEE-TTEECCCCSS--EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE-E
T ss_pred             cCccEEEEEEEeeeCCCeEEEEE-CCEECCCCCc--eeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe-E
Confidence            56789999999999999999999 6665543211  000000      012357999999999999999999999995 4


Q ss_pred             cceEEEEEEeec
Q psy7941         226 SKRLMLHVHCTY  237 (238)
Q Consensus       226 ~~~~~l~V~~~p  237 (238)
                      ..++.|.|...|
T Consensus        90 ~~t~~l~v~~~P  101 (126)
T 1he7_A           90 SASIMAAFMDNP  101 (126)
T ss_dssp             EEEEEECCCSCT
T ss_pred             EEEEEEEEEcCC
Confidence            788888887766

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=1.3e-12  Score=85.16  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|...|+.+.+.+|++++|.|.+....+                       .|.|.|.|||+. .......     ..
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~-----------------------~p~P~V~W~Kgk-~~~~~~~-----~~   57 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDL-----------------------LRKPTIKWFKGK-WMDLASK-----AG   57 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCS-----------------------SSCCEEEEEESS-SCCHHHH-----TT
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCC-----------------------CCCCcEEEeeCc-CcccCCC-----CC
Confidence            577999999999999999999999964222                       247889999963 1110000     01


Q ss_pred             ccEEEEEc-----CCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEc
Q psy7941          88 ARLSVTHN-----DANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVI  135 (238)
Q Consensus        88 ~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  135 (238)
                      .++.+...     ....+.|+|.+++.+|+|.|+|++.+. +.....+.|+|..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           58 KHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             ceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            12222110     112459999999999999999999876 3345677888887

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.48  E-value=2.6e-13  Score=86.74  Aligned_cols=91  Identities=20%  Similarity=0.392  Sum_probs=66.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++...+..... ..........    ....|.|.++..+|+|.|+|.+.|
T Consensus        13 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             CCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc
Confidence            45678899999999999999999999999955423222111 0011122211    345799999999999999999999


Q ss_pred             CCCCCccceEEEEEEeec
Q psy7941         220 GVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       220 ~~g~~~~~~~~l~V~~~p  237 (238)
                       .| ..+..+.|.|..+|
T Consensus        93 -~~-~~~~~~~L~V~~~P  108 (108)
T 3m45_A           93 -MP-VKTSKAYLTVLGVP  108 (108)
T ss_dssp             -SS-CEEEEEEEEEECCC
T ss_pred             -CC-CcEEEEEEEEEcCC
Confidence             66 55888899998887

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.48  E-value=2.2e-13  Score=87.14  Aligned_cols=94  Identities=26%  Similarity=0.444  Sum_probs=63.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..         
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~---------   53 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTAS--------------------------GNPPPQIMWFKDNETLVE---------   53 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC------------------------------CCEEEEESSSBCCC---------
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECc--------------------------CcCCCeEEEEECCeEccc---------
Confidence            478888899999999999999999984                          234667999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPD  138 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~  138 (238)
                      ..++....   ...+|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++.
T Consensus        54 ~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           54 DSGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             BTTEEEET---TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred             CCCeEEeC---CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence            22222221   1238999999999999999999775 4445566777776554

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.48  E-value=5.8e-13  Score=83.76  Aligned_cols=93  Identities=16%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+.         
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g--------------------------~p~p~v~W~~~g~~~~---------   48 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATG--------------------------EPRPTAIWTKDGKAIT---------   48 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC---------
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEe--------------------------cCCCEEEEEECCEECc---------
Confidence            35788999999999999999999999863                          3456799999765532         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      ...++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|.
T Consensus        49 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           49 QGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             SSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence            2345555432 344589999999999999999998753 33444455554

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.48  E-value=6.9e-13  Score=94.71  Aligned_cols=129  Identities=18%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~-~~~~~   85 (238)
                      +...+..+.+.+|++++|.|.+....                          ...+.||+... .   .+.... .....
T Consensus         3 v~q~p~~v~v~~G~~v~L~C~~s~~~--------------------------~~~v~W~rq~~g~~~~~l~~~~~~~~~~   56 (203)
T 2bnu_A            3 VTQIPAALSVPEGENLVLNCSFTDSA--------------------------IYNLQWFRQDPGKGLTSLLLIQSSQREQ   56 (203)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESCCC--------------------------EEEEEEEEECTTSCEEEEEEEETTCSEE
T ss_pred             cEEcCCEEEEeCCCCEEEEEEECCCC--------------------------cceEEEEEeCCCCCcEEEEEECCCCccc
Confidence            34567889999999999999986432                          12599998642 1   111111 11112


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C---cceeeEEEEEcCC---cccccccCCceeecCCCc
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M---TKQMAFLEVVIPP---DISSEETSGDMMVPEGGS  155 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~---~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~  155 (238)
                      ..+|+.+.. .....++|.|.+++.+|+|.|+|.+.+..   .   ....+.|.|....   .+.+...     ......
T Consensus        57 ~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~-----~~~~~~  131 (203)
T 2bnu_A           57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQL-----RRSKSS  131 (203)
T ss_dssp             EETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEE-----CCSSSS
T ss_pred             cCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEec-----CCCCCC
Confidence            356888764 34567899999999999999999996531   1   1123567776432   1111100     011247


Q ss_pred             EEEEEEEcc-ccCCeE
Q psy7941         156 AKLVCKAKG-YPTPKI  170 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~  170 (238)
                      +.|.|.+.| +|.|.+
T Consensus       132 ~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A          132 DKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             SCEEEEEESCCTTCCC
T ss_pred             cEEEEEccccccCccc
Confidence            899999988 898877

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=2.9e-13  Score=85.18  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=63.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE--EEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF--SVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....    .....  ......|.|.++..+|+|.|+|.|.|..|
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   86 (99)
T 1g1c_A           12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSD----RIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG   86 (99)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS----SEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcceEEcCCCcEEEEEEEEEeCCCEEEEEE-CCEECCCCC----CEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCC
Confidence            345678899999999999999999999999 554443211    01111  11223799999999999999999999999


Q ss_pred             CCccceEEEEEEe
Q psy7941         223 PTVSKRLMLHVHC  235 (238)
Q Consensus       223 ~~~~~~~~l~V~~  235 (238)
                      .. ..++.|.|..
T Consensus        87 ~~-~~~~~l~V~~   98 (99)
T 1g1c_A           87 ET-SSHAFLLVQA   98 (99)
T ss_dssp             EE-EEEEEEEEEC
T ss_pred             cE-EEEEEEEEec
Confidence            44 6777888764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=85.81  Aligned_cols=78  Identities=19%  Similarity=0.319  Sum_probs=61.8

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..            .....|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTH------------ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             CCEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTT------------CCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCc------------CCCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            34568899999999999999999999999 5443321            1234799999999999999999999999665


Q ss_pred             cceEEEEEEee
Q psy7941         226 SKRLMLHVHCT  236 (238)
Q Consensus       226 ~~~~~l~V~~~  236 (238)
                      ++.+.|.|...
T Consensus        78 s~~~~l~V~~~   88 (91)
T 3bfo_A           78 SKKVEIIIDEL   88 (91)
T ss_dssp             CCCEEEEEC--
T ss_pred             eeeEEEEEehh
Confidence            67888887653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.47  E-value=1.3e-12  Score=110.54  Aligned_cols=154  Identities=14%  Similarity=0.149  Sum_probs=93.3

Q ss_pred             cCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEEEEEccc-CcccCeEEEEEEecCCCcceeeEEEEE---
Q psy7941          59 TDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSV-RREDRGYYMCQVNTNPMTKQMAFLEVV---  134 (238)
Q Consensus        59 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~l~v~---  134 (238)
                      .+.|.+.+.|.+++........       .            .+.|..+ ....++.|.|.+.+.........+.+.   
T Consensus       101 ~g~P~p~i~W~k~g~~~~~~~~-------~------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~  161 (731)
T 2v5y_A          101 NNGPLGNPIWNISGDPTRTWNR-------A------------ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP  161 (731)
T ss_dssp             TTCCCCSEEEEECCCCCSSCEE-------E------------EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSC
T ss_pred             CCCCccceeEEEeCCcCCceeE-------E------------EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecc
Confidence            4678899999998765321110       0            3333333 122235566644332221111112222   


Q ss_pred             --cCCcccccccCCceeecCCCcEEEEEEEccccCCeEE-EEe-CCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCC
Q psy7941         135 --IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT-WRR-EDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEM  210 (238)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~-W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  210 (238)
                        .+|.+.   .+....+..|+.+.|.|.+.|.|.|.+. |++ .++..+..........   ....+.|.|.++...|.
T Consensus       162 ~~~~p~~~---~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~---~~~~~~l~I~~~~~~d~  235 (731)
T 2v5y_A          162 CTRTPHFL---RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASFNVVNTTKRDA  235 (731)
T ss_dssp             CSSSCEEC---CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCS---SEEEEEEEECSCCTTTC
T ss_pred             cccccccc---cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEecc---ccceEEEEEcccccccC
Confidence              233332   2445788999999999999999999887 873 2454443221000000   01235799999999999


Q ss_pred             eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         211 GAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       211 G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|+|.|.|..|...+..+.|.|..+|
T Consensus       236 g~Y~c~A~n~~G~~~s~~~~l~V~~~P  262 (731)
T 2v5y_A          236 GKYRCMIRTEGGVGISNYAELVVKEPP  262 (731)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECCC
T ss_pred             eEEEEEEECCCCCcceeeEEEEEecCC
Confidence            999999999999645777888888766

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.47  E-value=3.2e-13  Score=84.96  Aligned_cols=83  Identities=22%  Similarity=0.349  Sum_probs=62.4

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee---ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES---EVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....     ........   ..|.|.++..+|+|.|+|.|.|..|
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g   86 (99)
T 1u2h_A           13 MDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQ-----RRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG   86 (99)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCBT-----TEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CceEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCC-----CEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCC
Confidence            34578899999999999999999999999 554443211     11111112   2699999999999999999999999


Q ss_pred             CCccceEEEEEEe
Q psy7941         223 PTVSKRLMLHVHC  235 (238)
Q Consensus       223 ~~~~~~~~l~V~~  235 (238)
                      . .+.++.|.|..
T Consensus        87 ~-~~~~~~l~V~~   98 (99)
T 1u2h_A           87 A-RQCEARLEVRG   98 (99)
T ss_dssp             E-EEEEEEEEEEC
T ss_pred             c-eeEEEEEEEEC
Confidence            4 47777888763

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1e-13  Score=89.39  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             ccCCceeecCCCcEEEEEEEccc---cCCeEEEEeCCCeeeEeecCCCCCcceE-------EEeeceEEEEEeecCCCeE
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDNKEIIVRSNPPSSQKVF-------SVESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~  212 (238)
                      ..+..+.+.+|+.+.|.|.+.|.   |.|.|.|++ ++....... ........       ......|.|.++...|+|.
T Consensus        17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   94 (118)
T 2edn_A           17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSK-SGARFSFKESHNSASNVYTVELHIGKVVLGDRGY   94 (118)
T ss_dssp             BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEE-TTTCCCCCS-TTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSC
T ss_pred             ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee-CCEeccCCC-CccEEEeccccccccccceEEEEEeeCChhhCEE
Confidence            34566789999999999999874   789999999 431111000 00000000       1124579999999999999


Q ss_pred             EEEEeeeCCCCCccceEEEEEEee
Q psy7941         213 YQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       213 y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |+|.+.|..| ..+..+.|.|+.|
T Consensus        95 Y~Cevsn~~g-~~s~~~~L~V~~~  117 (118)
T 2edn_A           95 YRLEVKAKDT-CDSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEEECSSC-EEEEEECCEEECC
T ss_pred             EEEEEEEcCC-cEEEEEEEEEEcC
Confidence            9999999999 4588999999875

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.46  E-value=2.7e-13  Score=85.22  Aligned_cols=80  Identities=24%  Similarity=0.414  Sum_probs=61.9

Q ss_pred             CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++.....        .. ....++.|.|.++..+|+|.|+|.+.|..|.
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~--------~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--------SR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAM   87 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--------TT-EEEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC--------ce-eecCCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence            4456788999999999998 689999999995332211        11 2334568999999999999999999999994


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                       .+.++.|.|.
T Consensus        88 -~~~~~~l~V~   97 (98)
T 1gl4_B           88 -DQGTATLHVQ   97 (98)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -cccEEEEEEe
Confidence             4777777774

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=7.5e-13  Score=83.97  Aligned_cols=91  Identities=19%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      ++.|...+..+.+.+|+++.|.|.+.+                           |.+.+.|+|++..+..         .
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~---------------------------~~~~v~W~k~g~~l~~---------~   50 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE---------------------------DDANVKWFKNGEEIIP---------G   50 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS---------------------------SSCCCEEEETTEECCC---------S
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC---------------------------CCCeEEEEECCEECCC---------C
Confidence            445888899999999999999999853                           2467999998765422         2


Q ss_pred             c--cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          88 A--RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        88 ~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                      .  ++.+... ....+|.|.+++.+|+|.|+|.+.|   ....+.|.|..+|.
T Consensus        51 ~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~   99 (103)
T 1x44_A           51 PKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTTG---GQSSAKLSVDLKSG   99 (103)
T ss_dssp             TTCSEEEEEE-TTEEEEEEEEECTTTCSEEEEEETT---EEEEEEEEEECCCS
T ss_pred             CceEEEEEEc-CCEEEEEECCCCcccCEEEEEEECC---CcEEEEEEEeCCCC
Confidence            2  4444432 2344899999999999999999976   35566788876654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=4.7e-13  Score=81.38  Aligned_cols=82  Identities=17%  Similarity=0.366  Sum_probs=59.0

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      ....+.+.+|+++.|.|.+.+                           |.+.+.|+|++..+.         .+.++.+.
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~---------------------------p~p~v~W~k~g~~l~---------~~~~~~~~   45 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG---------------------------PGGPVRWYKDGERLA---------SQGRVQLE   45 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC---------------------------CSTTCEEEETTEECC---------CCSSEEEE
T ss_pred             CCeEEEEecCCCEEEEEEECC---------------------------CCcEEEEEECCEEcc---------ccccEEEe
Confidence            356788999999999999742                           356799999876643         23445544


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI  135 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~  135 (238)
                      .. ....+|.|.+++.+|+|.|+|.+.+.   ...+.|.|..
T Consensus        46 ~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~a~l~V~e   83 (84)
T 2lu7_A           46 QA-GARQVLRVQGARSGDAGEYLCDAPQD---SRIFLVSVEE   83 (84)
T ss_dssp             EC-SSCEEEEESSCSSTTCEEEEEECTTT---CEEEEEEECC
T ss_pred             ec-CCeEEEEecCCCCcccEEEEEEECCE---EEEEEEEEEC
Confidence            43 33448999999999999999998442   4455666654

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.46  E-value=6.8e-13  Score=93.82  Aligned_cols=172  Identities=17%  Similarity=0.211  Sum_probs=99.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~~   85 (238)
                      +.+.+..+.+.+|++++|.|.+.....                          ..+.||+...  .  .+.... .....
T Consensus         3 VtQ~p~~v~v~~G~svtL~C~~s~~~~--------------------------~~v~Wyrq~~g~~~~~l~~~~~~~~~~   56 (200)
T 3rgv_A            3 VTQMQGQVTLSENDFLFINCTYSTTGY--------------------------PTLFWYVQYSGEGPQLLLQVTTANNKG   56 (200)
T ss_dssp             EECCCSEEEEETTCCEEECCEEECSSC--------------------------CEEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred             cEECCCEEEEeCCCCEEEEEEecCCCC--------------------------cEEEEEEeCCCCCcEEEEEecCCCCcc
Confidence            456788899999999999999975322                          2499998532  1  111111 00112


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC--CcceeeEEEEEcC---CcccccccCCceeecCCCcEEEE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP--MTKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ..+||.... .....++|+|.+++.+|+|.|+|.+....  .-...+.|.|...   +.+.+..    . ......+.|.
T Consensus        57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~----~-~~~~~~~tl~  131 (200)
T 3rgv_A           57 SSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQ----L-RDSKSSDKSV  131 (200)
T ss_dssp             EETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEE----E-EESSSSSCEE
T ss_pred             cCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEE----c-cCCCCCceEE
Confidence            246787764 34467899999999999999999985321  1123346777642   2111110    0 0112337899


Q ss_pred             EEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         160 CKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       160 C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      |.+.+ +|.-.+.|.+++. .+.....     .........-....+...+...|.|.+..
T Consensus       132 Cl~~gf~P~i~v~~~~~g~-~~~~~~t-----~~~~~~~~~~~~~~~~w~~~~~~~c~~~~  186 (200)
T 3rgv_A          132 CLFTDFDSQTNVSQSKDSD-VYITDKC-----VLDMRSMDFKSNSAVAWSNKSDFACANAF  186 (200)
T ss_dssp             EEEESCCTTCCCCCCSSTT-CEECCCE-----EEEEGGGTEEEEEEEEECSCSSCCTTTTT
T ss_pred             EEcccccCCeEeEeccCCc-EEeecce-----EEccccccccccceEEecCCCceEeeeec
Confidence            99988 6644899999544 3332110     00000000111233456677788888764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=5.4e-13  Score=82.44  Aligned_cols=78  Identities=15%  Similarity=0.323  Sum_probs=56.6

Q ss_pred             cccceeccCcee--EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           7 FEPDFLYPLENV--TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         7 ~~p~~~~~~~~~--~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      .||.|..+++.+  .+.+|+++.|.|.+.+                           |.+.+.|+|++..+.        
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~---------------------------p~~~v~W~k~g~~i~--------   47 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR---------------------------EDAPVRWYKDGQEVE--------   47 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC---------------------------TTSCCEEEETTSCCC--------
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC---------------------------CCcEEEEEECCEEee--------
Confidence            456676666654  4568999999999842                           356699999877643        


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                       .+.++.+... ....+|.|.+++.+|+|.|+|.+.|
T Consensus        48 -~~~~~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A           48 -ESDFVVLENE-GPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             -CCSSCEEEEE-TTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             -eeeeeeEEec-CCeEEEEeCCCChhhcEEEEEEEcc
Confidence             2344544433 2344899999999999999999855

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=2.1e-13  Score=88.82  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             EEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE-----EeeceEEEEE
Q psy7941         130 FLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS-----VESEVLSLTK  204 (238)
Q Consensus       130 ~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~  204 (238)
                      .|+|..+|.+......     .......|.|.+.|.|.|.+.|++ ++..+.....    .....     ...+.|.|.+
T Consensus         2 ~L~V~~pP~i~~~~~~-----~~~~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~----~~~~~~~~~~~~~~~L~i~~   71 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKI----IHVEYYQEGEISEGCLLFNK   71 (118)
T ss_dssp             --CCCCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEE-TTEECCCSSS----EEEEEEECSSEEEEEEEEES
T ss_pred             EEEEecCCceeccCCC-----eeccceEEEEEeeeeCCCeEEEEE-CCEECCCCCc----eeEEEeccCccccEEEEECC
Confidence            3556667765433111     123567899999999999999999 5554432110    11111     1345799999


Q ss_pred             eecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         205 VTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       205 ~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                      +..+|+|.|+|.|.|..|.. ..++.|.|..+|+
T Consensus        72 ~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~  104 (118)
T 1wwc_A           72 PTHYNNGNYTLIAKNPLGTA-NQTINGHFLKEPF  104 (118)
T ss_dssp             CCGGGCEEEEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred             CChhcCEEEEEEEECCCCeE-eeEEEEEEccCCC
Confidence            99999999999999999944 7788888777663

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.3e-13  Score=84.55  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ......+.+|+.+.|.|.+  .|.|.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|. 
T Consensus        13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k-~g~~l~~~~-----r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-   83 (100)
T 2yuz_A           13 PLTDQTVNLGKEICLKCEI--SENIPGKWTK-NGLPVQESD-----RLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY-   83 (100)
T ss_dssp             CCCCEEEETTSCCCEEEEC--SSCCCEEEEE-TTEECCCCS-----SEEEEECSSEEEEEESSCCGGGCSEEEEEESSS-
T ss_pred             cCCceEEcCCCCEEEEEEe--CCCCeEEEEE-CCEECCCCC-----cEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC-
Confidence            3556788999999999999  7889999999 555543211     1111111  237999999999999999999997 


Q ss_pred             CCCccceEEEEEEeecC
Q psy7941         222 PPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p~  238 (238)
                        ..+.++.|.|..+|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              337788899998883

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.45  E-value=1.3e-11  Score=87.97  Aligned_cols=179  Identities=19%  Similarity=0.322  Sum_probs=104.7

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------eecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------ITNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~~   87 (238)
                      -.+++|+++.|+|.++...   +.                     ...+.|+|+........-..+          ..-.
T Consensus        10 ~lvkPG~Sl~lSC~~SG~t---f~---------------------~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~k   65 (254)
T 4f9p_D           10 EVVRPGTSVKVSCKASGYA---FT---------------------SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFK   65 (254)
T ss_dssp             EEECTTCCEEEEEEEESSC---GG---------------------GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTT
T ss_pred             ceECCCCCeEEEEEEeCCC---hh---------------------hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhC
Confidence            3578999999999997431   11                     123788885321111111111          1124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcC----C---------------cccccccCC
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIP----P---------------DISSEETSG  146 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~----~---------------~~~~~~~~~  146 (238)
                      +||.+...+. +.+.|.+.+++.+|++.|+|.-... ...-..+.++|...    |               .+.....+.
T Consensus        66 gR~TiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~  145 (254)
T 4f9p_D           66 DRTTLTADQSSSTAYMQLSSLTSDDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPV  145 (254)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECS
T ss_pred             CCEEEeeccCCCcCeeEEccCCCCCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCc
Confidence            6888876544 6788999999999999999965321 11112233444321    1               122223355


Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCC----eeeEeecC--CC-CCcceE-E--EeeceEEEEEeecCCCeEEEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDN----KEIIVRSN--PP-SSQKVF-S--VESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~----~~~~~~~~--~~-~~~~~~-~--~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+..|+.++|.|.+...-...+.|++...    +.++-...  .. ...++. .  ....+|.|..++.+|.+.|.|.
T Consensus       146 slsvs~G~~vtlsC~~S~~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~  225 (254)
T 4f9p_D          146 TLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQ  225 (254)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEE
T ss_pred             eeEEcCCCcEeeEEEccCcccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEe
Confidence            5778999999999998654344689987321    11211110  00 011111 1  1123699999999999999997


Q ss_pred             eeeC
Q psy7941         217 AANG  220 (238)
Q Consensus       217 ~~n~  220 (238)
                      ..+.
T Consensus       226 q~~~  229 (254)
T 4f9p_D          226 QSNS  229 (254)
T ss_dssp             ECSS
T ss_pred             ecCC
Confidence            6654

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.18  E-value=6.1e-15  Score=103.34  Aligned_cols=134  Identities=15%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~   85 (238)
                      +.+.+..+.+.+|++++|.|.+....                          .+.+.||++...    .+.... .....
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~~   56 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSYEDST--------------------------FDYFPWYHQFPGESPALLIAIRPVSNKK   56 (185)
Confidence            34567788999999999999986421                          225999996421    111110 11112


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcC-----CcccccccCCceeecCCCcEEE
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIP-----PDISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ..+|+.+... ....++|+|.+++.+|+|.|+|.+.+.. .....+.|.|...     |.+.... +      ....+.|
T Consensus        57 ~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~~~-~------~~~~vtL  129 (185)
T 3c6l_A           57 EDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLK-D------PRSQDST  129 (185)
Confidence            3567766532 2356799999999999999999986421 1112335555532     2221110 1      1126899


Q ss_pred             EEEEcc-ccCCeEEEEeCCCe
Q psy7941         159 VCKAKG-YPTPKITWRREDNK  178 (238)
Q Consensus       159 ~C~~~~-~p~~~~~W~~~~~~  178 (238)
                      .|.+.| +|.|+|.|+. +..
T Consensus       130 ~C~~~gf~P~p~v~~~~-~~~  149 (185)
T 3c6l_A          130 LCLFTDFDSQINVPKTM-ESG  149 (185)
Confidence            999988 8999999988 443

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=99.45  E-value=4e-13  Score=96.46  Aligned_cols=177  Identities=14%  Similarity=0.169  Sum_probs=101.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee-eE-
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE-HV-   83 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~-~~-   83 (238)
                      .+...+..+.+.+|++++|.|.+.....                         ...+.||+....    .+..... .. 
T Consensus         5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~   59 (211)
T 2ak4_D            5 KVTQAQTEISVVEKEDVTLDCVYETRDT-------------------------TYYLFWYKQPPSGELVFLIRRNSFDEQ   59 (211)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCS-------------------------SCEEEEEEECTTCCCEEEEEEETTSCS
T ss_pred             ceEEeCCEEEEecCCCEEEEEEecCCcC-------------------------ceeEEEEEECCCCccEEEEEECCCcCc
Confidence            3556678899999999999999964321                         225999986421    1111111 00 


Q ss_pred             eecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcCC---cccccccCCceeecCCC
Q psy7941          84 ITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIPP---DISSEETSGDMMVPEGG  154 (238)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~  154 (238)
                      ....+||.+.. .....++|.|.+++.+|+|.|+|.+.+..   .  ....+.|.|....   .+.+...     .....
T Consensus        60 ~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~-----~~~~~  134 (211)
T 2ak4_D           60 NEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQL-----RDSKS  134 (211)
T ss_dssp             EEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSCCCEEEEE-----BCCSS
T ss_pred             cCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCCCCEEEEc-----cCCCC
Confidence            01356888764 34567899999999999999999996531   1  1123467776432   1111100     01123


Q ss_pred             cEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         155 SAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       155 ~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+.|.|.+.| +|.+.+.+.. +..... .........   ...+. .+......+..+|+|.+.+..+
T Consensus       135 ~vtL~Cl~~gf~P~~~v~~~~-~~~~~~-t~~~~~~~~---~~~S~-t~~~~~w~~g~~~tC~V~~~~~  197 (211)
T 2ak4_D          135 SDKSVCLFTDFDSQTNVSQSK-DSDVYI-TDKCVLDMR---SMDFK-SNSAVAWSNKSDFACANAFNNS  197 (211)
T ss_dssp             SCCEEEEEESCCTTCCCCCCS-SSSCEE-CCCEEEEEG---GGTEE-EEEEEEEECSTTCCTTSTTTTS
T ss_pred             ceEEEEEeeeecCCccccccc-ccceEe-cCchhcccc---ccccc-cccHHHccCCCceEEEEecCCc
Confidence            7899999988 7888662221 111000 000000000   11223 5566666777799999987643

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.45  E-value=6e-13  Score=83.12  Aligned_cols=78  Identities=15%  Similarity=0.342  Sum_probs=60.3

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+..                          .| +.+.|++++..+.        
T Consensus         6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p-p~i~W~k~g~~~~--------   50 (95)
T 2ckn_A            6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRD--------------------------DV-QSINWLRDGVQLV--------   50 (95)
T ss_dssp             SSCSCCBTTBBCCEEECTTSCEEEECCEES--------------------------SC-CEEEEEBTTBCCC--------
T ss_pred             CCCCCEEEcCcceEEEcCCCeEEEEEECCC--------------------------CC-CceEEEECCEecC--------
Confidence            346778888899999999999999999863                          23 4799999765532        


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                       ...++.+..     .+|.|.+++.+|+|.|+|.+.|..
T Consensus        51 -~~~~~~~~~-----~~L~i~~~~~~D~G~Y~C~a~n~~   83 (95)
T 2ckn_A           51 -ESNRTRITG-----EEVEVRDSIPADSGLYACVTSSPS   83 (95)
T ss_dssp             -CCSSEEECS-----SEEEESSCCGGGSEEEEEEEEETT
T ss_pred             -CCCCEEEeC-----CEEEECCCChHHCEEEEEEeccCC
Confidence             133444332     289999999999999999998753

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=86.76  Aligned_cols=82  Identities=28%  Similarity=0.473  Sum_probs=62.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...      ..........|.|.++..+|.|.|+|.|.|..|. 
T Consensus        18 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-   89 (99)
T 2yr3_A           18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLN-GQPIQYA------RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQ-   89 (99)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCCCEEEES-SSBCSSC------CCEEETTEEEEEECSCCTTCCBCEEEEEECSSCE-
T ss_pred             CCCCEEeCCCeEEEEEEEeeeCCCeEEEEEC-CEECccc------ceEeeCCeEEEEECCCChhhCEEEEEEEEECCCe-
Confidence            3456788999999999999999999999994 4333211      1112223457999999999999999999999994 


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      .+.++.|.|+
T Consensus        90 ~~~~~~l~V~   99 (99)
T 2yr3_A           90 VSCSAWVTVH   99 (99)
T ss_dssp             EEEECCEEEC
T ss_pred             EEEEEEEEEC
Confidence            4677777663

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=9.5e-13  Score=83.62  Aligned_cols=93  Identities=16%  Similarity=0.275  Sum_probs=67.4

Q ss_pred             cccceeccCce---eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           7 FEPDFLYPLEN---VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         7 ~~p~~~~~~~~---~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      .+|.+...+..   +.+.+|+++.|.|.+..                          .|.+ +.|+|++..+..      
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~-v~W~k~g~~~~~------   52 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSR--------------------------VDFP-ATWYKDGQKVEE------   52 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSS--------------------------TTCC-CEEEETTEECCC------
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecC--------------------------CCCc-cEEeeCCEECCC------
Confidence            46777777776   88999999999999852                          3455 899998765421      


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~  139 (238)
                         ..++.+... ....+|.|.+++.+|+|.|+|.+.|.   ...+.|.|..+|..
T Consensus        53 ---~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~---~~~~~l~V~~~P~p  101 (104)
T 2e6p_A           53 ---SELLVVKMD-GRKHRLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPSGP  101 (104)
T ss_dssp             ---BTTBEEEEE-TTEEEEEESSCCTTTCEEEEEECSSC---CCCEEEEEECCCCS
T ss_pred             ---CCCEEEEeC-CCEEEEEECCCChhhCEEEEEEECCc---eEEEEEEEcCCCCC
Confidence               234443322 23448999999999999999999775   33667888876643

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.45  E-value=8.6e-13  Score=82.70  Aligned_cols=83  Identities=24%  Similarity=0.420  Sum_probs=62.5

Q ss_pred             CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeec--eEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESE--VLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....+.+|+.+.|.|.+.|. |.|.+.|++ ++..+...     ........++  .|.|.++..+|.|.|+|.|.|..
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~-~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQLENS-----EKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDY   81 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESCCTTCEEEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CcCEEEcCCCcEEEEEEEeccCCCCEEEEEE-CCEECcCC-----CCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCC
Confidence            445778999999999999997 899999999 55443211     1111112333  79999999999999999999999


Q ss_pred             CCCccceEEEEEE
Q psy7941         222 PPTVSKRLMLHVH  234 (238)
Q Consensus       222 g~~~~~~~~l~V~  234 (238)
                      |.. ..++.|.|.
T Consensus        82 g~~-~~~~~l~V~   93 (97)
T 2bk8_A           82 GED-SSYAELFVK   93 (97)
T ss_dssp             CEE-EEEEEEEET
T ss_pred             CeE-eEEEEEEEE
Confidence            944 667777775

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.45  E-value=7.5e-13  Score=84.43  Aligned_cols=92  Identities=22%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+..                          .|.+ +.|+|++..+.        
T Consensus         5 ~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~~~~-v~W~k~g~~~~--------   49 (106)
T 2dlt_A            5 SSGQLEVLQDIADLTVKAAEQAVFKCEVSD--------------------------EKVT-GKWYKNGVEVR--------   49 (106)
T ss_dssp             SCCCCCEEECCCCEEEESSCCEECCCEESC--------------------------SSCE-EEEEESSCBCC--------
T ss_pred             CCCCCEEecCCCCeEEeCCCeEEEEEEEcC--------------------------CCcc-eEEEcCCEECc--------
Confidence            456889999999999999999999999852                          2344 99999876543        


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                       ...++.+... ....+|.|.+++.+|+|.|+|.+.|. .....+.|.|.
T Consensus        50 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~-~~~~~~~l~V~   96 (106)
T 2dlt_A           50 -PSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFL   96 (106)
T ss_dssp             -CCSSCEEEEE-TTEEEEEESSCCTTTCSCEEEEEETS-CCCCCBCEEEE
T ss_pred             -CCCCEEEEEe-CCEEEEEECCCCcCCCEEEEEEEccC-CceEEEEEEEE
Confidence             2334444332 23448999999999999999999886 44455666665

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.44  E-value=3.7e-13  Score=84.08  Aligned_cols=79  Identities=16%  Similarity=0.400  Sum_probs=61.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.|.| |.+.|++ ++..+...      .. ....+..|.|.++..+|+|.|+|.|.|..|. 
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k-~g~~~~~~------~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-   85 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVES------NR-TRITGEEVEVRDSIPADSGLYACVTSSPSGS-   85 (95)
T ss_dssp             BCCEEECTTSCEEEECCEESSC-CEEEEEB-TTBCCCCC------SS-EEECSSEEEESSCCGGGSEEEEEEEEETTEE-
T ss_pred             cceEEEcCCCeEEEEEECCCCC-CceEEEE-CCEecCCC------CC-EEEeCCEEEECCCChHHCEEEEEEeccCCCc-
Confidence            4557789999999999999987 8999999 55444321      11 2223668999999999999999999999994 


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .+..+.|.|
T Consensus        86 ~~~~~~l~V   94 (95)
T 2ckn_A           86 DTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            466777665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.44  E-value=2e-13  Score=100.84  Aligned_cols=124  Identities=15%  Similarity=0.285  Sum_probs=60.7

Q ss_pred             cCcccCeEEEEEEecCCCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcccc-----CCeEEEEeCC-Ceee
Q psy7941         107 VRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-----TPKITWRRED-NKEI  180 (238)
Q Consensus       107 ~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~~-~~~~  180 (238)
                      ++.+|+|.|+|.+.  +.......+.+..++.+.  ..+..+.+.+|+.+.|.|.+.+.|     .+.+.|++++ +...
T Consensus        11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~--~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMT--QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -----------------------------CCCEE--EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc--hhhhhhhhhheeeceeEE--eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            67899999999997  222222233333333332  234567889999999999999877     4899999743 2211


Q ss_pred             E--eec----CCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         181 I--VRS----NPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       181 ~--~~~----~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .  ...    ...........   ....|.|.++..+|+|.|+|.|.|..+........|.|.
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence            1  000    00011122211   223799999999999999999999865333334455554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.44  E-value=2.8e-13  Score=86.41  Aligned_cols=92  Identities=23%  Similarity=0.351  Sum_probs=68.2

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ...|.|...+..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+.         
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p~p~v~W~k~g~~l~---------   56 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDG--------------------------EPVPTVTWLRKGQVLS---------   56 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEEC--------------------------SSCCBCCBCSSSSCCT---------
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEE--------------------------cCCCEEEEEECCEECC---------
Confidence            35788999999999999999999999853                          4467799999875532         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      ...++.+... ....+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus        57 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           57 TSARHQVTTT-KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             TCSSEEEEEC-SSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred             CCCCEEEEEC-CCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence            2345554432 2345999999999999999999987533 344445554

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.44  E-value=7.6e-12  Score=89.72  Aligned_cols=181  Identities=21%  Similarity=0.302  Sum_probs=104.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|++++|+|.++...+.                          .+.||++..    +++... .....
T Consensus         3 vlTQsP~sls~s~G~~vtisC~~S~~i~~--------------------------y~~WyqQ~pG~~P~lLiy~~s~~~s   56 (259)
T 4f9l_D            3 VLTQSPSSLSASLGDTITITCHASQNINL--------------------------WLSWYQQRPGNIPKLLIYRASNLHT   56 (259)
T ss_dssp             CEEEECSBCCBCTTCEEEEEEEESSCCTT--------------------------CEEEEEECTTSCEEEEEETTTEECT
T ss_pred             CEEccCCeEEECCCCCEEEEEEcCCCCCC--------------------------CEEEEEECCCCCCEEEEECCCccCC
Confidence            34567888899999999999997643332                          388997532    111111 11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c-ceeeEEEEEc---CC------------------cccc
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T-KQMAFLEVVI---PP------------------DISS  141 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-~~~~~l~v~~---~~------------------~~~~  141 (238)
                      .-..||+..... .+++|+|.+++.+|.+.|+|....... . -..+.|+|+-   .|                  .+..
T Consensus        57 Gvp~RFSgS~Sg-t~ftLtIs~lq~eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL  135 (259)
T 4f9l_D           57 GVPSRFSGSGSA-TGFTLTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQL  135 (259)
T ss_dssp             TCCTTEEEEEET-TEEEEEEESCCGGGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCE
T ss_pred             CCCCCEEeeccC-CeEEEEEcccChhhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceE
Confidence            124688876543 467999999999999999998633211 0 0111233220   00                  0111


Q ss_pred             cccCCceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--EeecC---------CCCCcceEEEee-----ceEEE
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVRSN---------PPSSQKVFSVES-----EVLSL  202 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~~~---------~~~~~~~~~~~~-----~~l~i  202 (238)
                      . ......++.|..+.|.|.+.|+.  ...+.|.+.. ++.+  .....         .....++....+     -.|.+
T Consensus       136 ~-eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm  214 (259)
T 4f9l_D          136 Q-ESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQL  214 (259)
T ss_dssp             E-EECCCEEESSSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEE
T ss_pred             E-eECCCEECCCCcEEEEEeeeCCCcccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEE
Confidence            1 11223478899999999998854  3368898732 1111  11111         111122222221     26888


Q ss_pred             EEeecCCCeEEEEEee
Q psy7941         203 TKVTRSEMGAYQCIAA  218 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~  218 (238)
                      .+++.+|.+.|+|.-.
T Consensus       215 ~sL~~eDTAvYYCAr~  230 (259)
T 4f9l_D          215 SSLTSEDSAVYYCSRE  230 (259)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEe
Confidence            9999999999999754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.43  E-value=1.6e-12  Score=81.98  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             cccceeccCce-eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLEN-VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.|...+.. +.+.+|+++.|.|.+.                           .|.+.+.|+|++..+..        
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~---------------------------~p~~~v~W~k~g~~i~~--------   50 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA---------------------------DPKLEVKWYKNGQEIRP--------   50 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES---------------------------CTTSCEEEEESSCBCCC--------
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec---------------------------CCCceEEEEECCEECCC--------
Confidence            47888888776 6888999999999985                           23567999998765422        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP  137 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~  137 (238)
                       ..++.+... ....+|.|.+++.+|+|.|+|.+   +.....+.|.|..+|
T Consensus        51 -~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a---g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           51 -STKYIFEHK-GCQRILFINNCQMTDDSEYYVTA---GDEKCSTELFVRSGP   97 (100)
T ss_dssp             -BTTEEEEEE-TTEEEEEEEEECTTTCCEEEEEE---TTEEEEEEEEECCSC
T ss_pred             -CCCEEEEec-CCEEEEEEcCCCcCcCEEEEEEE---CCceEEEEEEEecCC
Confidence             335554432 23348999999999999999999   334455667776654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.6e-13  Score=85.99  Aligned_cols=87  Identities=28%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe-e--ceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE-S--EVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....    ........ +  ..|.|.++..+|.|.|+|.|.|..
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   89 (110)
T 2dm2_A           15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKS----DHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQ   89 (110)
T ss_dssp             CCCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCCTTC----SSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTT
T ss_pred             CcCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCC----CeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECC
Confidence            455678999999999999999999999999 444332111    11111111 1  269999999999999999999999


Q ss_pred             CCCccceEEEEEEeec
Q psy7941         222 PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p  237 (238)
                      |.. +..+.|.|..+|
T Consensus        90 g~~-~~~~~l~V~~~~  104 (110)
T 2dm2_A           90 GRI-SCTGRLMVQAVN  104 (110)
T ss_dssp             CCE-EECCCEEEECCS
T ss_pred             CeE-EEEEEEEEECCC
Confidence            954 778888888765

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-12  Score=83.94  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cccceec---cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           7 FEPDFLY---PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         7 ~~p~~~~---~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      .+|.|..   .+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+.       
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g--------------------------~P~p~i~W~k~g~~l~-------   66 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQG--------------------------KPRPQVVWTKGGAPLD-------   66 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC-------
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEcc--------------------------CCCCEEEEEECCEECC-------
Confidence            3677754   357789999999999999853                          4567899999876542       


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                         ..++.+.. .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|...|
T Consensus        67 ---~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           67 ---TSRVHVRT-SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             ---CSSCEEEE-CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             ---CCcEEEEE-CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence               12333322 23344799999999999999999988633 4445566666544

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.43  E-value=5.5e-13  Score=87.28  Aligned_cols=90  Identities=20%  Similarity=0.299  Sum_probs=63.0

Q ss_pred             eeecCCCcEEEEEEEccc--cCCeEEEEeCCCeeeEeecCCCCCcc----eEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         148 MMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEIIVRSNPPSSQK----VFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +.+.+|+.+.|.|.+.|.  |.+.+.|++++...............    ......+.|.|.++..+|+|.|+|.|.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            467789999999999984  45689999955421100000000000    011234579999999999999999999999


Q ss_pred             CCCccceEEEEEEeecC
Q psy7941         222 PPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p~  238 (238)
                      |.. ..++.|.|..+|.
T Consensus        98 g~~-~~~~~l~V~~~p~  113 (122)
T 3s35_X           98 MTK-KNSTFVRVHEKPF  113 (122)
T ss_dssp             CEE-EEEEEEEEEEEEC
T ss_pred             Cce-EEEEEEEEeccCe
Confidence            944 7889999998874

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.43  E-value=2.4e-12  Score=81.62  Aligned_cols=94  Identities=22%  Similarity=0.379  Sum_probs=70.0

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+..                          .|.+ +.|++++..+.        
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~--------------------------~p~~-v~W~k~~~~l~--------   49 (103)
T 2e7b_A            5 SSGPVRFQEALKDLEVLEGGAATLRCVLSS--------------------------VAAP-VKWCYGNNVLR--------   49 (103)
T ss_dssp             CCCCCCCTBCCCCEEEESSSCEEEEEECSS--------------------------CCCS-CEEEESSSBCC--------
T ss_pred             CCCCCEEEecCccEEEECCCcEEEEEEEeC--------------------------CCCC-eEEEECCEECC--------
Confidence            346788989999999999999999999852                          3455 99999776542        


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                       ...++.+... ....+|.|.+++.+|+|.|+|.+   +.....+.|.|..+|.
T Consensus        50 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~---g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           50 -PGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCSF---GDQTTSATLTVTALPS   98 (103)
T ss_dssp             -CSSSEEEEEC-SSEEEEEECSCCTTTCCCEEEEC---SSCBCCBCEEEECCCC
T ss_pred             -CCCcEEEEEc-CCEEEEEEccCCcccCEEEEEEE---CCcEEEEEEEEEeccc
Confidence             2345555433 34558999999999999999983   3345566788887664

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=99.43  E-value=3.6e-12  Score=90.65  Aligned_cols=165  Identities=14%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeEeecC
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHVITNN   87 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~   87 (238)
                      .+ +..+.+.+|++++|.|.+....                          ...+.||+....    .+...........
T Consensus         4 ~Q-p~~~~v~~G~~vtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~   56 (200)
T 2nw2_A            4 DQ-PTEMTATEGAIVQINCTYQTSG--------------------------FNGLFWYQQHAGEAPTFLSYNVLDGLEEK   56 (200)
T ss_dssp             BC-CSEEEEETTCCEEEEEECCCSS--------------------------CCCEEEEEECTTSCCEEEEEECSSEEEEE
T ss_pred             EC-CCeEEEccCCCEEEEEEECCCC--------------------------CceEEEEEeCCCCCcEEEEEEcCCCcccC
Confidence            45 7788999999999999986432                          234999986421    1111111111126


Q ss_pred             ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC---CCc--ceeeEEEEEcCC---cccccccCCceeecCCCcEEE
Q psy7941          88 ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN---PMT--KQMAFLEVVIPP---DISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        88 ~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~~--~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~~~l  158 (238)
                      +||.+.. .....++|.|.+++.+|+|.|+|.+...   ...  ...+.|.|....   .+.+..    .. .....+.|
T Consensus        57 ~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~----~~-~~~~~~tl  131 (200)
T 2nw2_A           57 GRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQ----LR-DSKSSDKS  131 (200)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCCCCEECCCEEEEEECCCSSCCCEEEE----EE-ECC--CCE
T ss_pred             CceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcceeeeeCCCEEEEEecCcccCCCeEEE----cC-CCCCCceE
Confidence            7888764 3456789999999999999999998641   111  123467776421   111100    01 11227899


Q ss_pred             EEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         159 VCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       159 ~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.+.+. |...+.+..    .          ..........|.+......+.|.+.|...|..+
T Consensus       132 ~Cl~~gf~P~~~v~~~~----~----------~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (200)
T 2nw2_A          132 VCLFTDFDSQTNVSQSK----D----------SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA  182 (200)
T ss_dssp             EEEEESCCTTCCCCCCS----S----------SSEEECCCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred             EEEeecccCCcEeeccc----c----------cceEecCchhhhhhhcccccccceeccCCCceE
Confidence            9999884 443432111    1          011111122344444444556778888777654

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.1e-12  Score=81.06  Aligned_cols=94  Identities=21%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+..+.+.+|+++.|.|.+.                           .|.+.+.|++++..+.         
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~---------------------------~p~~~v~W~k~~~~l~---------   49 (103)
T 2dku_A            6 SGANCFTEELTNLQVEEKGTAVFTCKTE---------------------------HPAATVTWRKGLLELR---------   49 (103)
T ss_dssp             CCCCCCSSCCCCEEEETTSEEEEEEECS---------------------------SCCSCCEEEESSCBCC---------
T ss_pred             CCCCEeEecCCcEEEeCCCcEEEEEEeC---------------------------CCCCeEEEEeCCEECC---------
Confidence            4578999999999999999999999952                           2355799999876542         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDI  139 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~  139 (238)
                      ...++.+.. ......|.|.+++.+|+|.|+|.   .+.....+.|.|...|..
T Consensus        50 ~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~---~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           50 ASGKHQPSQ-EGLTLRLTISALEKADSDTYTCD---IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             SSSSEEEEE-ETTEEEEEEESCCTTTCSEEEEE---CSSCBCCEEEEEECSCCC
T ss_pred             CCCeEEEEe-CCCEEEEEECCCCcccCEEEEEE---eCCceEEEEEEEeCccCC
Confidence            233555442 23445899999999999999998   333455677888766543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.43  E-value=2.2e-13  Score=92.98  Aligned_cols=85  Identities=26%  Similarity=0.452  Sum_probs=64.8

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE---eeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV---ESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ....+..|+.+.|.|.+.|.|.|.+.|++ ++..+....     ......   ....|.|.++..+|.|.|+|.|.|..|
T Consensus        49 ~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  122 (154)
T 1fhg_A           49 LDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESR-----HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG  122 (154)
T ss_dssp             CCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSS-----SEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCC-----cEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCC
Confidence            44678899999999999999999999999 554442211     111111   124799999999999999999999999


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . ....+.|.|..+|
T Consensus       123 ~-~~~~~~l~V~~~p  136 (154)
T 1fhg_A          123 E-ATCTAELLVETMG  136 (154)
T ss_dssp             E-EEEEEEEEEECC-
T ss_pred             e-EEEEEEEEEeCcC
Confidence            5 4788888888765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.42  E-value=1.2e-12  Score=82.33  Aligned_cols=83  Identities=29%  Similarity=0.445  Sum_probs=62.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+...     ........  ...|.|.++..+|+|.|+|.|.|..|
T Consensus        13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g   86 (99)
T 3puc_A           13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQG-----GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG   86 (99)
T ss_dssp             CCCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSS-----SSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCC-----CCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCC
Confidence            344678899999999999999999999999 55444211     11111111  22699999999999999999999999


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                      . .+.++.|.|.
T Consensus        87 ~-~~~~~~l~V~   97 (99)
T 3puc_A           87 S-VSSSCKLTIK   97 (99)
T ss_dssp             E-EEEEEEEEEE
T ss_pred             c-EeEEEEEEEE
Confidence            4 4777777775

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.42  E-value=6.5e-13  Score=83.74  Aligned_cols=84  Identities=24%  Similarity=0.419  Sum_probs=62.6

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....  ............|.|.++..+|+|.|+|.|.|..|. .
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-I   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-E
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEE-CCEEcccccc--cccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCE-E
Confidence            44678899999999999999999999999 5544432111  111122223457999999999999999999999994 4


Q ss_pred             cceEEEEE
Q psy7941         226 SKRLMLHV  233 (238)
Q Consensus       226 ~~~~~l~V  233 (238)
                      +.++.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            67777766

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.41  E-value=9.4e-13  Score=86.46  Aligned_cols=91  Identities=18%  Similarity=0.302  Sum_probs=65.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      +..+.+.+|+++.|.|.+.+.|.+.+.|++.++..+..... ..........    ....|.|.+++.+|+|.|+|.+.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence            34567889999999999999999999999855543321110 0011111111    135899999999999999999999


Q ss_pred             CCCCCccceEEEEEEeec
Q psy7941         220 GVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       220 ~~g~~~~~~~~l~V~~~p  237 (238)
                      . | .....+.|.|..+|
T Consensus        88 ~-g-~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           88 D-S-VSTKEVKVIVLATM  103 (124)
T ss_dssp             S-S-EEEEEEEEEEECC-
T ss_pred             C-C-CCcEEEEEEEEeCC
Confidence            9 7 55888999998876

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.41  E-value=5.6e-15  Score=96.92  Aligned_cols=105  Identities=20%  Similarity=0.330  Sum_probs=73.7

Q ss_pred             ceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceE-EEe----ece
Q psy7941         126 KQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVF-SVE----SEV  199 (238)
Q Consensus       126 ~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~-~~~----~~~  199 (238)
                      ...+.|.|..+|.+..   +....+.+|+.+.|.|.+.|.|.|. +.|+++ +..+.....  ...... ...    ...
T Consensus         4 ~~~~~l~V~~~P~i~~---~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~-~~~l~~~~~--~~~~~~~~~~~~~~~~~   77 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK-ENVLESGTS--GRYTVETISTEEGVIST   77 (122)
T ss_dssp             SCCCCCCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEESS-SCEECSEEE--TTEEEEEEEETTEEEEE
T ss_pred             ceEEEEEEecCCCccC---CCeEEEecCCCEEEEEEEeecCCCcEeEEEEC-CEEccCCCC--CCEEEEEecCCCceEEE
Confidence            3455677777887654   3456788999999999999999986 999995 443322100  000110 111    337


Q ss_pred             EEEEEeecCCC-eEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         200 LSLTKVTRSEM-GAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       200 l~i~~~~~~d~-G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |.|.++..+|. |.|+|.|.|..|.. ...+.|.|..++
T Consensus        78 L~I~~v~~~D~~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  115 (122)
T 2cry_A           78 LTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSE  115 (122)
T ss_dssp             EECTTCCHHHHHSCEEEEEECSSCEE-EEEECCCCSCSS
T ss_pred             EEEcCCChhhCCceEEEEEECCCCeE-EEEEEEEECCCC
Confidence            99999999999 99999999999954 678888776543

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=96.50  Aligned_cols=172  Identities=18%  Similarity=0.246  Sum_probs=98.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee-eEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE-HVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~-~~~~   85 (238)
                      +.+.+..+.+.+|+++.|.|.+....                          ...+.|||...  .  .+..... ....
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~   56 (199)
T 3gsn_A            3 VEQSPQSLHVQEGDSTNFTCSFPSSN--------------------------FYALHWYRWETAKSPEALFVMTLNGDEK   56 (199)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCCTT--------------------------CCCEEEEEECTTSCCEEEEEECSTTCCC
T ss_pred             EEECCCEEEEeCCCCEEEEEEEcCCC--------------------------CCEEEEEEECCCCCcEEEEEECCCCCcc
Confidence            45677889999999999999986432                          22489998632  1  1111110 0011


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcC---CcccccccCCceeecCCCcEEEE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ..+||.+.. .....++|+|.+++.+|+|.|+|.+.....  -...+.|.|...   +.+.+.....     ....+.|.
T Consensus        57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~-----~~~~~tl~  131 (199)
T 3gsn_A           57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRD-----SKSSDKSV  131 (199)
T ss_dssp             EETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSSCEEECSCEEEEEECCCSSCCCEEEECCC-----SSSSSSCC
T ss_pred             ccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccccccCCCCEEEEEecccCCCCCEEEEccc-----CCCCceEE
Confidence            245776653 344678999999999999999999854221  112345677642   2111111100     11236789


Q ss_pred             EEEcc-ccCCeEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         160 CKAKG-YPTPKITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       160 C~~~~-~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      |.+.+ +|.-.+.|.+++ ..+..... -.... ......     ..+...+.+.|.|.+...
T Consensus       132 Cl~~gf~P~i~~~~~~~~-~~~~~~~t~~~~~~-~~~~~~-----~~~~w~~~~~~~c~~~~~  187 (199)
T 3gsn_A          132 CLFTDFDSQTNVSQSKDS-DAYITDKTVLDMRS-MDFKSN-----SAVAWSNKSDFACANAFN  187 (199)
T ss_dssp             EEEETCCTTCCSSCSSCS-SEEECCCBCCCCCS-SCCCCB-----CEEEEESCSCSCSSSSCC
T ss_pred             EEeecccCCeEeEeccCC-CeEecCceEEcccc-cccccc-----ccEEecCCCccEeeeccc
Confidence            99988 663389999944 44432221 11111 111111     234556677888988744

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.41  E-value=4e-12  Score=81.27  Aligned_cols=94  Identities=21%  Similarity=0.349  Sum_probs=70.1

Q ss_pred             CCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           4 VRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         4 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      ....+|.|...+..+.+.+|+++.|.|.+..                            .+.+.|++++..+.       
T Consensus         4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~----------------------------~p~v~W~k~~~~~~-------   48 (108)
T 2dm7_A            4 GSSGPARFTQDLKTKEASEGATATLQCELSK----------------------------VAPVEWKKGPETLR-------   48 (108)
T ss_dssp             SSCCCCCBCSCCBCCEEETTSCEEEEEEBSS----------------------------SCCCEEESSSSBCC-------
T ss_pred             ccCCCCeeeecCCcEEEeCCCcEEEEEEeCC----------------------------CCeeEEEECCEECC-------
Confidence            3457899999999999999999999999853                            24599999876532       


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                        .+.++.+... ....+|.|.+++.+|+|.|+|.+.+   ....+.|.|..+|.
T Consensus        49 --~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~   97 (108)
T 2dm7_A           49 --DGGRYSLKQD-GTRCELQIHDLSVADAGEYSCMCGQ---ERTSATLTVRALPA   97 (108)
T ss_dssp             --SSSSCEEEEE-TTEEEEEESSCCTTTCSEEEEEETT---EEEEEECEEECCCS
T ss_pred             --CCCCEEEEec-CCEEEEEECCCCcccCEEEEEEEcC---CEEEEEEEEecCCH
Confidence              2345555443 2345799999999999999999943   34556677776553

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=9.5e-14  Score=89.24  Aligned_cols=87  Identities=33%  Similarity=0.558  Sum_probs=65.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....    ........  ...|.|.++..+|.|.|+|.|.|..|
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~-g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   90 (110)
T 2dm3_A           16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLD-GKPVRPDS----AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG   90 (110)
T ss_dssp             CCEEEEESSSCBCCEEEEECSSCCEEECBBS-SSBCCCCS----SEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSC
T ss_pred             CCcEEEeCCCEEEEEEEEEEcCCCEEEEEEC-CEECCCCC----ceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCC
Confidence            4456788999999999999999999999994 43332111    01111111  23799999999999999999999999


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . .+..+.|.|..+|
T Consensus        91 ~-~~~~~~l~V~~~p  104 (110)
T 2dm3_A           91 Q-NSFSLELVVAAKE  104 (110)
T ss_dssp             E-EEECCEEEEECCC
T ss_pred             E-EEEEEEEEEeCCC
Confidence            5 5888889998765

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.41  E-value=3.7e-12  Score=91.51  Aligned_cols=137  Identities=17%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~   84 (238)
                      .+.+.+..+.+.+|++++|.|.+.....                          ..+.||++..  .  .+.... ....
T Consensus        11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~--------------------------~~v~WyrQ~pg~~~~~Li~~~~~~~~   64 (226)
T 3tjh_C           11 SVTQPDARVTVSEGASLQLRCKYSYSAT--------------------------PYLFWYVQYPRQGLQMLLKYYSGDPV   64 (226)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEEESSC--------------------------EEEEEEEECTTSCCEEEEEECSSSSE
T ss_pred             EEEEeCCEEEEEcCCCEEEEEEEecCCC--------------------------CeEEEEEECCCCCcEEEEEecCCCcc
Confidence            4567788899999999999999975322                          2489999632  1  111111 1001


Q ss_pred             ecC-ccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC---CC--cceeeEEEEEcC---CcccccccCCceeecCCC
Q psy7941          85 TNN-ARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN---PM--TKQMAFLEVVIP---PDISSEETSGDMMVPEGG  154 (238)
Q Consensus        85 ~~~-~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~  154 (238)
                      ... +||.... .....++|+|.+++.+|+|.|+|.+...   ..  -...+.|.|...   +.+.+..    ..-. ..
T Consensus        65 ~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~~P~V~~----~~~~-~~  139 (226)
T 3tjh_C           65 VQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQ----LRDS-KS  139 (226)
T ss_dssp             EECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSCCCEEEE----EEEC-C-
T ss_pred             ccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEecCCccccccCCCeEEEEeCCCCCCCCEEEE----cccC-CC
Confidence            123 7888764 4457889999999999999999998632   11  112245666642   1111110    0111 13


Q ss_pred             cEEEEEEEcc-ccCCeEEEEeCCC
Q psy7941         155 SAKLVCKAKG-YPTPKITWRREDN  177 (238)
Q Consensus       155 ~~~l~C~~~~-~p~~~~~W~~~~~  177 (238)
                      .+.|.|.+.+ +|.-.+.|.++++
T Consensus       140 ~~tl~Cl~~~f~P~i~v~~~~~~~  163 (226)
T 3tjh_C          140 SDKSVCLFTDFDSQTNVSQSKDSD  163 (226)
T ss_dssp             --CEEEEEESCCTTCCCCCCSCTT
T ss_pred             CeEEEEEcccccCCcEEEeeccCc
Confidence            4789999988 6744899999444

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.41  E-value=6.6e-12  Score=78.60  Aligned_cols=89  Identities=18%  Similarity=0.288  Sum_probs=63.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+..++..+.+.+|+++.|.|.+...                         .|.+.+.|++++..+.         ...+
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~-------------------------~p~~~v~W~~~~~~~~---------~~~~   48 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENY-------------------------DQSTQVTWYFGVRQLE---------NSEK   48 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESC-------------------------CTTCEEEEEETTEECC---------SSSS
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEecc-------------------------CCCCEEEEEECCEECc---------CCCC
Confidence            34567788999999999999999631                         1466899999876432         2345


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      +.+... .+..+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus        49 ~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           49 YEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             EEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            554332 3455899999999999999999987643 333444544

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.40  E-value=3.9e-13  Score=81.73  Aligned_cols=79  Identities=20%  Similarity=0.425  Sum_probs=57.5

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ..+.+.+|+.+.|.|.+.+ |.|.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|.   
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k-~g~~l~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~---   73 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYK-DGERLASQG-----RVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD---   73 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEE-TTEECCCCS-----SEEEEECSSCEEEEESSCSSTTCEEEEEECTTT---
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEE-CCEEccccc-----cEEEeecCCeEEEEecCCCCcccEEEEEEECCE---
Confidence            3467889999999999876 888999999 666553321     1111112  236999999999999999998542   


Q ss_pred             CccceEEEEEEee
Q psy7941         224 TVSKRLMLHVHCT  236 (238)
Q Consensus       224 ~~~~~~~l~V~~~  236 (238)
                        +.++.|.|..|
T Consensus        74 --~~~a~l~V~eP   84 (84)
T 2lu7_A           74 --SRIFLVSVEEP   84 (84)
T ss_dssp             --CEEEEEEECCC
T ss_pred             --EEEEEEEEECC
Confidence              56677888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.40  E-value=1e-12  Score=102.12  Aligned_cols=108  Identities=21%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+..+.+.+|+++.|.|.+.                          + |.+.+.|+++++......     ....++.+ 
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~--------------------------g-p~p~i~W~~~~~~~~~~~-----~~~~r~~~-  298 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTK--------------------------Q-QGMTKVWVSPSNEQVLSQ-----GSNGSVSV-  298 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCS--------------------------S-TTCEEEEECTTSCBCCSC-----CSSSSEEE-
T ss_pred             cccCceecCCCeEEEEeEee--------------------------C-CCCeEEEEeCCCeeEeec-----ccCCceEe-
Confidence            35567889999999999984                          2 467899999776543211     12335555 


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKIT  171 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  171 (238)
                      ...    +|.|.+++.+|+|.|+|.+.|... ....+.+.|...             ...|+.+.|.|.+.|.|.|.|.
T Consensus       299 ~~~----~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~-------------~~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          299 RNG----DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNF-------------TLHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             ETT----EEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESS-------------CCC-------------------
T ss_pred             ecC----eEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEee-------------eccCCceEEEEEeCCCCCCccc
Confidence            222    899999999999999999988633 334445555321             1457789999999999988764

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.40  E-value=4e-13  Score=87.28  Aligned_cols=90  Identities=29%  Similarity=0.524  Sum_probs=62.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEE-----EeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT-----KVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-----~~~~~d~G~y~C~~~n  219 (238)
                      +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+...... .........++.+.+.     ++..+|.|.|+|.|.|
T Consensus        16 p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N   93 (117)
T 2v9t_A           16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDD-PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN   93 (117)
T ss_dssp             CCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTC-SSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEE
T ss_pred             CCCEEEcCCCcEEEEEECCccCCCeEEEEE-CCEeccccCCC-CcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEe
Confidence            345678899999999999999999999999 55444321110 0111122223334433     4478999999999999


Q ss_pred             CCCCCccceEEEEEEee
Q psy7941         220 GVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       220 ~~g~~~~~~~~l~V~~~  236 (238)
                      ..|...+..+.|.|..+
T Consensus        94 ~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           94 YLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             TTEEEECCCEEEEEC--
T ss_pred             CccceEeeeEEEEhhhh
Confidence            99988788888888653

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.5e-13  Score=84.82  Aligned_cols=81  Identities=21%  Similarity=0.438  Sum_probs=61.2

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+..                          .|.+.+.|++++..+...      
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~g~~~~~~------   55 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRG--------------------------TPVPRITWLLNGQPIQYA------   55 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEE--------------------------ESCCCCEEEESSSBCSSC------
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEee--------------------------eCCCeEEEEECCEECccc------
Confidence            356889998899999999999999999953                          346679999987654211      


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .. ..   .....+|.|.+++.+|+|.|+|.+.|...
T Consensus        56 ---~~-~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   88 (99)
T 2yr3_A           56 ---RS-TC---EAGVAELHIQDALPEDHGTYTCLAENALG   88 (99)
T ss_dssp             ---CC-EE---ETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred             ---ce-Ee---eCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence               11 00   12234899999999999999999987643

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=99.40  E-value=4.8e-12  Score=90.51  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=80.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~   86 (238)
                      +.+ +..+.+.+|++++|.|.+.....                         ...+.||++...    .+...... ...
T Consensus         3 v~Q-p~~~~v~~G~~v~L~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~-~~~   55 (206)
T 1kgc_D            3 TTQ-PNSMESNEEEPVHLPCNHSTISG-------------------------TDYIHWYRQLPSQGPEYVIHGLTS-NVN   55 (206)
T ss_dssp             EEC-CSEEEEETTSCEEEEEEESCCCT-------------------------TCCEEEEEECTTSCCEEEEEESSS-SEE
T ss_pred             EEC-CCeEEEcCCCCEEEEEEEcCCCC-------------------------CccEEEEEECCCCCcEEEEEECCC-Ccc
Confidence            345 77889999999999999964111                         125999986421    11111111 112


Q ss_pred             CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-------CcceeeEEEEEcCCcccccccCCceee--cCCCcE
Q psy7941          87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-------MTKQMAFLEVVIPPDISSEETSGDMMV--PEGGSA  156 (238)
Q Consensus        87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-------~~~~~~~l~v~~~~~~~~~~~~~~~~~--~~g~~~  156 (238)
                      .+||.+.. .....++|.|.+++.+|+|.|+|.+.+..       .....+.|.|...+....    ..+.+  .....+
T Consensus        56 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~----P~V~~~~~~~~~v  131 (206)
T 1kgc_D           56 NRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPD----PAVYQLRDSKSSD  131 (206)
T ss_dssp             CSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTTCCCCCCCCCCEEEEEECCCSSCC----CEEEECCCCTTCC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCCCcccceECCCEEEEEeCCCCCCC----CeEEeecCCCCCe
Confidence            67888775 34467899999999999999999986521       111334677764321100    00111  112478


Q ss_pred             EEEEEEcc-ccCCeE
Q psy7941         157 KLVCKAKG-YPTPKI  170 (238)
Q Consensus       157 ~l~C~~~~-~p~~~~  170 (238)
                      .|.|.+.+ +|.+.+
T Consensus       132 ~L~C~~~g~~P~~~V  146 (206)
T 1kgc_D          132 KSVCLFTDFDSQTNV  146 (206)
T ss_dssp             CEEEEEESCCTTCCC
T ss_pred             EEEEEeeceeccccc
Confidence            99999987 788876

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.39  E-value=1.5e-13  Score=87.64  Aligned_cols=83  Identities=23%  Similarity=0.464  Sum_probs=62.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...     ......  .....|.|.++..+|+|.|+|.|.|..|
T Consensus        21 p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~-g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   94 (106)
T 1nct_A           21 PRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTS-----ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG   94 (106)
T ss_dssp             CCCEEESSSSCEECCEEEECSSCCBCCBCSS-SSCCTTC-----SSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEEC-CEECCCC-----CCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCC
Confidence            4456789999999999999999999999994 4333211     011111  1145899999999999999999999999


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                      . .+.++.|.|+
T Consensus        95 ~-~~~~~~l~V~  105 (106)
T 1nct_A           95 K-QEAEFTLTIQ  105 (106)
T ss_dssp             B-CCEEEEEEEC
T ss_pred             e-EEEEEEEEEE
Confidence            5 4788888774

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=80.40  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .++.|...|....+.+|+++.|.|.+.                          +.|.+.+.|++++..+..         
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~---------   46 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAV--------------------------GSPIPHYQWFKNELPLTH---------   46 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEE--------------------------CSSCCEEEEEETTEECTT---------
T ss_pred             CceEEEECCCccEecCCCcEEEEEEec--------------------------cCCCCEEEEEcCCeeCCc---------
Confidence            457788889899999999999999985                          345678999998654321         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..          ..+|.|.+++.+|+|.|+|.+.+...
T Consensus        47 ~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g   74 (91)
T 3bfo_A           47 ET----------KKLYMVPYVDLEHQGTYWCHVYNDRD   74 (91)
T ss_dssp             CC----------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CC----------CCeEEECCCCHHhCEEEEEEEEcCCC
Confidence            10          11899999999999999999987644

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.39  E-value=8.4e-12  Score=77.82  Aligned_cols=89  Identities=21%  Similarity=0.340  Sum_probs=64.4

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ...|.|...+..+.+.+|+++.|.|.+ +                          .|.+.+.|+|++..+.         
T Consensus         6 ~~~~~~~~~~~~~~v~~G~~v~l~C~~-~--------------------------~p~~~v~W~k~~~~l~---------   49 (95)
T 2k1m_A            6 KPVSAFSKKPRSVEVAAGSPAVFEAET-E--------------------------RAGVKVRWQRGGSDIS---------   49 (95)
T ss_dssp             CCCCCCSBCCCCEEEETTSCEEEEEEC-S--------------------------SSSCCCEEECSSSEEC---------
T ss_pred             CCCCeeEeCCCcEEEeCCCcEEEEEEe-C--------------------------CCCCeEEEEECCEECC---------
Confidence            445888889999999999999999998 2                          2245699999876532         


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      ...++.+... ....+|.|.+++.+|+|.|+|.+.   .....+.|.|.
T Consensus        50 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ag---~~~~~~~l~V~   94 (95)
T 2k1m_A           50 ASNKYGLATE-GTRHTLTVREVGPADQGSYAVIAG---SSKVKFDLKVI   94 (95)
T ss_dssp             SSTTCEEEEE-TTEEEEEESSCCTTCCSEEEEEET---TEEEEEEEEEE
T ss_pred             CCCcEEEEEc-CCEEEEEEcCCCcccCEEEEEEEC---CceEEEEEEEe
Confidence            2345554432 234489999999999999999992   23344555553

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=6.1e-12  Score=81.09  Aligned_cols=84  Identities=21%  Similarity=0.364  Sum_probs=61.3

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      +.+.+|+++.|.|.+.                           .|.+.+.|+|++..+..         ..++.+... .
T Consensus        23 ~~~~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~~~~---------~~~~~~~~~-~   65 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC---------------------------RPWAEVRWTKDGEEVVE---------SPALLLQKE-D   65 (113)
T ss_dssp             EEEETTCCEEEEEEES---------------------------CTTCCCEEEETTEECCC---------BTTBEEEEC-S
T ss_pred             EEEEcCCeEEEEEEec---------------------------CCCCeEEEEECCEECcc---------CCCEEEEEC-C
Confidence            6788999999999984                           23557999998765322         234444332 2


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCcccc
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPDISS  141 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~~~~  141 (238)
                      ...+|.|.+++.+|+|.|+|.+.+   ....+.|.|..+|....
T Consensus        66 ~~~~L~I~~v~~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~~~  106 (113)
T 2cpc_A           66 TVRRLVLPAVQLEDSGEYLCEIDD---ESASFTVTVTEPPVRII  106 (113)
T ss_dssp             SEEEEEESSCCTTTCEEEEEESSS---CEEEEEEEEECCCCCCC
T ss_pred             CEEEEEECCCCcccCEEEEEEEec---CcEEEEEEEecCCchhc
Confidence            233899999999999999999976   45677788888776543

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.39  E-value=1.6e-12  Score=93.64  Aligned_cols=134  Identities=16%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~~   86 (238)
                      +.+.+..+.+.+|+++.|+|.+...                           ...+.|||...  .  .+....... ..
T Consensus         4 V~Q~p~~v~v~~G~sVtL~C~~s~~---------------------------~~~v~Wyrq~pg~~~~~l~~~~~~~-~~   55 (229)
T 3mbe_C            4 VEQNPPALSLYEGADSGLRCNFSTT---------------------------MKSVQWFQQNHRGRLITLFYLAQGT-KE   55 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC---------------------------CSCEEEEEECSSSCBCCCEEESSEE-EE
T ss_pred             EEEcCCEEEEEcCCCEEEEEEEeCC---------------------------CcEEEEEEECCCCCcEEEEEeCCCC-cc
Confidence            4567888999999999999999643                           12499998532  1  111111111 33


Q ss_pred             CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-C----cceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941          87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-M----TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~----~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      .+||.... .....++|+|.+++.+|+|.|+|.+.... .    -...+.|.|...   +.+.+..     .......+.
T Consensus        56 ~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~-----~~~~~~~vt  130 (229)
T 3mbe_C           56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQ-----LKDPRSQDS  130 (229)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEE-----EECTTCTTC
T ss_pred             CCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEE-----ccCCCCCEE
Confidence            56787764 44577899999999999999999986422 1    112345777642   2111110     011123489


Q ss_pred             EEEEEcc-ccCCeEEEEeCCC
Q psy7941         158 LVCKAKG-YPTPKITWRREDN  177 (238)
Q Consensus       158 l~C~~~~-~p~~~~~W~~~~~  177 (238)
                      |.|.+.+ +|.-.+.|.+++.
T Consensus       131 l~Cl~~gf~P~i~v~~~~~~~  151 (229)
T 3mbe_C          131 TLCLFTDFDSQINVPKTMESG  151 (229)
T ss_dssp             EEEEEESCCSSSCCCCCCSSS
T ss_pred             EEEEccccCCceEeEeeccCc
Confidence            9999988 5644899999444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.39  E-value=7.7e-13  Score=81.74  Aligned_cols=66  Identities=21%  Similarity=0.406  Sum_probs=48.3

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +.+.+|+.+.|.|.+.+ |.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k-~g~~i~~~~-----~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYK-DGQEVEESD-----FVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEE-TTSCCCCCS-----SCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEE-CCEEeeeee-----eeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            45678999999999866 888999999 555543221     1111222  236999999999999999999764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-13  Score=85.15  Aligned_cols=83  Identities=14%  Similarity=0.345  Sum_probs=62.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +..+.+.+|+.+.|.|.+.+.| |.+.|+++ +..+...      .. ....+..|.|.++..+|.|.|+|.|.|..|. 
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~-g~~~~~~------~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-   79 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLAES------NR-TRITGEEVEVQDSVPADSGLYACVTSSPSGS-   79 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEES-SSBCCCC------SS-EEECSSEEEETTCCTTTCEEEEEEEEETTEE-
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEEC-CEECCCC------Cc-EEEECCEEEEccCCHHHCEEEEEEEEeCCce-
Confidence            3345678899999999999876 79999994 4433211      11 1223568999999999999999999999994 


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      ....+.|.|..+|
T Consensus        80 ~~~~~~l~V~~~~   92 (99)
T 2cr3_A           80 DTTYFSVNVSDAL   92 (99)
T ss_dssp             EEEEEEECBCSCC
T ss_pred             EEEEEEEEEecCC
Confidence            4778888877654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.38  E-value=1.3e-12  Score=81.50  Aligned_cols=82  Identities=24%  Similarity=0.379  Sum_probs=62.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.+  .|.+.|++ ++..+...      .. ....+..|.|.++..+|+|.|+|.|.|..| .
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k-~g~~~~~~------~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g-~   76 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTK-DGVHLGPN------NR-TVLIGEYLQIKGATPRDSGLYACTAARTVD-S   76 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEE-TTEEECCC------SS-EEEETTEEEECSCCGGGCEEEEEEEECSSC-E
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEE-CCEECCCC------ce-EEEeCCEEEECcCCcccCEEEEEEEccCCC-c
Confidence            34467889999999999887  57999999 55544321      11 223456899999999999999999999999 4


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      .+..+.|.|..++
T Consensus        77 ~~~~~~l~V~~~~   89 (95)
T 4hwu_A           77 ETWIFMVNVTDAA   89 (95)
T ss_dssp             EEEEEEEEECCC-
T ss_pred             EEEEEEEEEeCCc
Confidence            4788888887654

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.38  E-value=8.8e-11  Score=81.83  Aligned_cols=163  Identities=11%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...|+...|..|+++.|.|.+.-.                         .|. .+.|-..-.+..       .      
T Consensus         5 v~v~P~~~~V~~G~S~~l~Cs~~c~-------------------------~p~-~~glet~l~~~~-------~------   45 (192)
T 1zxq_A            5 VHVRPKKLAVEPKGSLEVNCSTTCN-------------------------QPE-VGGLETSLNKIL-------L------   45 (192)
T ss_dssp             EEEESSEEEECTTEEEEEEEEESCS-------------------------SCS-EEEEECSSEEEE-------E------
T ss_pred             EEEeCCCcEEeCCCcEEEEEECCCC-------------------------Ccc-ccccccccCceE-------E------
Confidence            3456778889999999999998521                         111 133333211110       0      


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCCcccccccCCceeecCCCcEEEEEEEcc-ccCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTP  168 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  168 (238)
                         ....+-..|.|.+++  |.|.|.|.+... ......+.+.|+.+|........ ...+..|+.++|.|.+.+ +|..
T Consensus        46 ---~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~  119 (192)
T 1zxq_A           46 ---DEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLD  119 (192)
T ss_dssp             ---EEETTEEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGG
T ss_pred             ---cCCCCeEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccC-CccccCCCcEEEEEEeCCeECCC
Confidence               111122278999998  788999999765 33455677888887765433211 124788999999999976 7876


Q ss_pred             --eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCC
Q psy7941         169 --KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGV  221 (238)
Q Consensus       169 --~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~  221 (238)
                        .+.|++ +...+......+......  ....+....+.++|.| +|+|.|.-..
T Consensus       120 ~L~v~llr-G~~~l~~~~f~~~~~~~~--~~tv~~~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          120 SLTLFLFR-GNETLHYETFGKAAPAPQ--EATATFNSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             GEEEEEEE-TTEEEEEEECCSSTTCTT--CEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             CcEEEEEc-CCEEeeecccccccCcCc--ceEEEEEEecchhhCCceEEEEEEecC
Confidence              489999 666654443211110000  0112334567788888 9999999666

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=6.8e-12  Score=80.26  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEe
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVI   84 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~   84 (238)
                      ..+|.|..++.++.+.+|+++.|.|.++.                            .+.+.|+|++..+..... ....
T Consensus         6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~----------------------------~p~v~W~knG~~l~~~~~~~~~~   57 (112)
T 2e6q_A            6 SGTARLVAGLEDVQVYDGEDAVFSLDLST----------------------------IIQGTWFLNGEELKSNEPEGQVE   57 (112)
T ss_dssp             CSCCCEEECCCCEEEETTCEEEEEEEESS----------------------------CCCCEEEESSCBCCSSCCCTTSC
T ss_pred             cCCcEEecCCCCeEEcCCCcEEEEEEECC----------------------------CCeEEEEECCEECccCccccccc
Confidence            45688999999999999999999999963                            345999998876532110 0000


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCCc
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPPD  138 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~~  138 (238)
                      ....|+.+... ....+|.|.+++.+|+|.|+|..-+  .....+.|.|..+|.
T Consensus        58 ~~~~r~~i~~~-g~~~~L~I~~v~~~D~G~Y~~~~~~--~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           58 PGALRYRIEQK-GLQHRLILHAVKHQDSGALVGFSCP--GVQDSAALTIQESSG  108 (112)
T ss_dssp             TTSCEEEECCB-TTEEEEEEESCCSTTCSEEEEEEET--TEEEEEEEEEECSSC
T ss_pred             ccccEEEEEeC-CcEEEEEECCCCHHHCccEEEEEEC--CeeEEEEEEEeCCCc
Confidence            00015554432 2344899999999999999875433  234577899887664

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.37  E-value=7.7e-12  Score=80.21  Aligned_cols=99  Identities=23%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--   83 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--   83 (238)
                      ..+|.|...+....+.+|+++.|.|.+...                        ..+.+.+.|++++..+........  
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~------------------------~~~~~~i~W~k~~~~~~~~~~~~~~~   63 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASS------------------------SDSPMTFAWXXDNEALQDAEMENYAH   63 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEES------------------------CCCCCEEEEEETTEECTTCEEEEEEE
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecC------------------------CCCCEEEEEccCCcccccccccceee
Confidence            457888888999999999999999999642                        123567999998765432111000  


Q ss_pred             ee-cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941          84 IT-NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV  133 (238)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v  133 (238)
                      +. ..+....     ...+|.|.+++.+|+|.|+|.+.|....  +..+.|.|
T Consensus        64 ~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           64 LRAQGGELME-----YTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             TTGGGSSCEE-----EEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eeccCCCccc-----cceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            00 0000000     1238999999999999999999876433  34445544

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.37  E-value=1.3e-11  Score=80.73  Aligned_cols=101  Identities=20%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV   92 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~   92 (238)
                      .++..+.+.+|+++.|.|.+....                        .|.+.+.|++++........   . ...+...
T Consensus        13 ~p~~~v~v~~G~~v~L~C~~~g~p------------------------~~~~~i~W~~~~~~~~~~~~---~-~~~~~~~   64 (122)
T 3s35_X           13 SPSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKL---V-NRDLKTQ   64 (122)
T ss_dssp             ESCSCEEEEETCCEEEEEEEEECT------------------------TCCCEEEEECSCTTCCHHHH---B-CCSCCEE
T ss_pred             cCCCCEEEecCCeEEEEEEEEcCC------------------------CCcEEEEEECCCcccCCcee---e-eeccccc
Confidence            455667899999999999997421                        23467999998764221000   0 0000000


Q ss_pred             EEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcccc
Q psy7941          93 THN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDISS  141 (238)
Q Consensus        93 ~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~~~  141 (238)
                      ...  .....+|.|.+++.+|+|.|+|.+.|... ....+.|.|..+|.+..
T Consensus        65 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~i~~  116 (122)
T 3s35_X           65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAF  116 (122)
T ss_dssp             EETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEECC--
T ss_pred             cCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCeEEe
Confidence            000  01223899999999999999999987543 45566788887776654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=5.5e-13  Score=83.44  Aligned_cols=78  Identities=26%  Similarity=0.544  Sum_probs=60.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-C
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-P  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~  223 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..            .....|.|.++..+|+|.|+|.+.|..+ .
T Consensus        17 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~   83 (96)
T 2ens_A           17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPL------------PPSPVLILPEIGPQDQGTYSCVATHSSHGP   83 (96)
T ss_dssp             STTSEECTTCEEEEECCCSSCSSCCCCCEE-SSSBCSS------------CCCSEEEEESCCTTTCEEEECEECCSSCCC
T ss_pred             CCCCEEcCCCeEEEEEEEccCCCCEEEEEE-CCEECcC------------CCCCEEEECCCCcccCEEEEEEEEeCCCCc
Confidence            334568899999999999999999999999 4443321            1245799999999999999999999654 3


Q ss_pred             CccceEEEEEEe
Q psy7941         224 TVSKRLMLHVHC  235 (238)
Q Consensus       224 ~~~~~~~l~V~~  235 (238)
                      ..+..+.|.|..
T Consensus        84 ~~s~~~~v~V~~   95 (96)
T 2ens_A           84 QESRAVSISIIE   95 (96)
T ss_dssp             EECCCEEEEECC
T ss_pred             EEEEEEEEEEeC
Confidence            456677777653

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=3.8e-12  Score=80.69  Aligned_cols=84  Identities=19%  Similarity=0.321  Sum_probs=60.5

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+....   .........  ...|.|.++..+|+|.|+|.|.|  
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~l~~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--   85 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP---KSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG--   85 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECSS-SSCCCEEEE-TTEECCCST---TCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--
T ss_pred             cCCCEEEECCCCEEEEEEecC-CCCeEEEEE-CCEECCCCC---ceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--
Confidence            345577889999999999987 778999999 555443211   001111111  24799999999999999999987  


Q ss_pred             CCCccceEEEEEEeec
Q psy7941         222 PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p  237 (238)
                         .+.++.|.|..+|
T Consensus        86 ---~~~~~~l~V~~~p   98 (103)
T 1x44_A           86 ---GQSSAKLSVDLKS   98 (103)
T ss_dssp             ---EEEEEEEEEECCC
T ss_pred             ---CcEEEEEEEeCCC
Confidence               2667788888766

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=1.3e-11  Score=78.29  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=58.8

Q ss_pred             ccccceeccCce-eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           6 GFEPDFLYPLEN-VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         6 ~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ..+|.|...+.. +.+.+|+++.|.|.+.                           .|.+.+.|+|++..+..       
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~l~~-------   58 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVELA---------------------------DHDAEVKWLKNGQEIQM-------   58 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEECS---------------------------SSSSCCEEEESSSEECC-------
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEEc---------------------------CCCCEEEEEECCEECCC-------
Confidence            457888877666 8899999999999983                           23556999998765432       


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                       ...++.+... ....+|.|.+++.+|+|.|+|.+.
T Consensus        59 -~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           59 -SGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             -CSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEET
T ss_pred             -CCCeEEEEec-CCEEEEEECCCCcccCEEEEEEEC
Confidence             1135554432 234589999999999999999993

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.35  E-value=6.9e-12  Score=89.11  Aligned_cols=137  Identities=15%  Similarity=0.264  Sum_probs=83.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEee
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVIT   85 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~   85 (238)
                      .+.+.+..+.+.+|+++.|.|.+....                          ...+.|||+..  .  .+.........
T Consensus         4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~   57 (208)
T 4ei6_A            4 KVQQSPESLSVPEGGMASLNCTSSDRN--------------------------FQYFWWYRQHSGEGPKALMSIFSDGDK   57 (208)
T ss_dssp             CEEEECSEEEEETTCCEECEEEECCTT--------------------------EEEEEEEEECTTSCCEEEEECCSSEEE
T ss_pred             eEEEeCCEEEEECCCCEEEEEEEcCCC--------------------------CceEEEEEeCCCCCcEEEEEECCCCcc
Confidence            456778889999999999999996432                          12489998632  1  11111111111


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC-----C-cceeeEEEEEcC---CcccccccCCceeecCCCc
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP-----M-TKQMAFLEVVIP---PDISSEETSGDMMVPEGGS  155 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----~-~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~  155 (238)
                      ..+||.... .....++|+|.+++.+|+|.|+|.+....     . -...+.|.|...   +.+.+..    .. .....
T Consensus        58 ~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~----l~-~~~~~  132 (208)
T 4ei6_A           58 KEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQ----LR-DSKSS  132 (208)
T ss_dssp             EETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSSCCCEEEE----EE-BSSCT
T ss_pred             cCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCccccccCCCCEEEEEeCcccCCCCEEEE----cc-cCCCC
Confidence            356888764 34467899999999999999999985321     1 122345777642   1111110    00 11123


Q ss_pred             EEEEEEEcc-ccCCeEEEEeCCC
Q psy7941         156 AKLVCKAKG-YPTPKITWRREDN  177 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~W~~~~~  177 (238)
                      +.|.|.+.+ +|.-++.|.++++
T Consensus       133 ~tl~Cl~~~f~P~i~v~~~~~~~  155 (208)
T 4ei6_A          133 DKSVCLFTDFDSQTNVSQSKDSD  155 (208)
T ss_dssp             TCEEEEEESCCTTCCCCCCSSTT
T ss_pred             ceEEEEeeccCCceEeeecccCc
Confidence            679999988 5634799999544

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.34  E-value=8.2e-13  Score=83.26  Aligned_cols=83  Identities=18%  Similarity=0.330  Sum_probs=57.1

Q ss_pred             cccceeccC----ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee
Q psy7941           7 FEPDFLYPL----ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH   82 (238)
Q Consensus         7 ~~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~   82 (238)
                      .+|.|...+    ..+.+.+|+++.|.|.+.+                          .|.+.+.|++++..+.....  
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~~--   54 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGG--------------------------NPMPTMRWLKNGKEFKQEHR--   54 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEE--------------------------ESCCEEEEEETTEECCGGGS--
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccc--------------------------cCCCEEEEEECCEEcccccc--
Confidence            467777544    5778999999999999853                          34667999998765422100  


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                          ...+....   ...+|.|.+++.+|+|.|+|.+.|...
T Consensus        55 ----~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g   89 (100)
T 3caf_A           55 ----IGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYG   89 (100)
T ss_dssp             ----TTCCEEEG---GGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ----cccEEEec---CeEEEEEccCCcCCCEEEEEEEEeCCC
Confidence                01112211   123899999999999999999987543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.33  E-value=5.3e-12  Score=81.40  Aligned_cols=97  Identities=18%  Similarity=0.301  Sum_probs=67.2

Q ss_pred             ceeeEEEEEcCC-cccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEE
Q psy7941         126 KQMAFLEVVIPP-DISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLS  201 (238)
Q Consensus       126 ~~~~~l~v~~~~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~  201 (238)
                      ...+.|.|...| .+..  .+....+.+|+.+.|.|.+.+.  |.+.|++ ++..+...      .......++   .|.
T Consensus         8 ~~~~~l~V~~~pp~~~~--~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~l~~~------~~~~~~~~~~~~~L~   76 (113)
T 2edh_A            8 RTSAMLTVRALPIKFTE--GLRNEEATEGATAVLRCELSKM--APVEWWK-GHETLRDG------DRHSLRQDGARCELQ   76 (113)
T ss_dssp             CCCCCCCCCCSCCCEEE--CCCCCEECTTSCEEEEEEESSC--CCCEEEE-SSSBCCCS------SSEEEEEETTEEEEE
T ss_pred             cEEEEEEEEcCCCcccc--cCCceEEeCCCeEEEEEEECCC--CcEEEEE-CCEECCCC------CcEEEEECCCEEEEE
Confidence            344556666444 4432  3445678999999999999775  7899999 44443211      122222233   799


Q ss_pred             EEEeecCCCeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         202 LTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       202 i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                      |.++..+|+|.|+|.|    | ..+.++.|.|..+|.
T Consensus        77 I~~v~~~D~G~Y~C~a----~-~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           77 IRGLVAEDAGEYLCMC----G-KERTSAMLTVRAMPS  108 (113)
T ss_dssp             ECSCCSTTCEEEEEEE----T-TEEEEEEEEECCCCC
T ss_pred             ECCCChhhCEEEEEEe----C-CCCEEEEEEEeCCCC
Confidence            9999999999999999    4 447788899988773

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.33  E-value=1.6e-11  Score=76.97  Aligned_cols=86  Identities=23%  Similarity=0.375  Sum_probs=58.2

Q ss_pred             cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+. ..+..+.+.+|+++.|.|.+..                         +.|.+.+.|++++.....         
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~-------------------------~~p~~~v~W~k~~~~~~~---------   54 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKS-------------------------KSPAYTLVWTRLHNGKLP---------   54 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEE-------------------------SSSCCEEEEEEGGGBCCC---------
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCC-------------------------CCCCcEEEEEeCCCCCCC---------
Confidence            34443 5567889999999999999962                         234667999997543211         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                       .+.. ....    +|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus        55 -~~~~-~~~~----~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           55 -SRAM-DFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   96 (98)
T ss_dssp             -TTEE-EETT----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -ceee-cCCC----EEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence             1111 1111    899999999999999999987633 333444544

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=99.32  E-value=3.6e-11  Score=86.43  Aligned_cols=128  Identities=14%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~   85 (238)
                      +...+..+.+.+|++++|.|.+. ..                          ...+.||+....    .+.... .....
T Consensus         4 v~Q~p~~v~v~~G~~vtL~C~~~-~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~~   56 (215)
T 1oga_D            4 LEQSPQFLSIQEGENLTVYCNSS-SV--------------------------FSSLQWYRQEPGEGPVLLVTVVTGGEVK   56 (215)
T ss_dssp             CEEECSEEEEETTCCEEEEEECS-SC--------------------------CSCEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred             EEECCCEEEEecCCCEEEEEEEc-CC--------------------------CceEEEEEeCCCCCcEEEEEEcCCCCcc
Confidence            34567888999999999999983 21                          234999986421    111111 11112


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEcCCc---ccccccCCceeecCCCcEEE
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKL  158 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l  158 (238)
                      ..+||.+... ....++|.|.+++.+|+|.|+|.+.....   ....+.|.|...+.   +.+.     ........+.|
T Consensus        57 ~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~-----~~~~~~~~vtL  131 (215)
T 1oga_D           57 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVY-----QLRDSKSSDKS  131 (215)
T ss_dssp             EETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEECCCSSCCCEEE-----EEEBSSSSSCE
T ss_pred             cCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEecccccceeCCCEEEEEeccCCCcCCEEE-----EcCCCCCCeEE
Confidence            3568887653 44678999999999999999999965311   11234677764321   1110     00112347899


Q ss_pred             EEEEcc-ccCCeE
Q psy7941         159 VCKAKG-YPTPKI  170 (238)
Q Consensus       159 ~C~~~~-~p~~~~  170 (238)
                      .|.+.| +|.|.+
T Consensus       132 ~C~~~gf~P~p~v  144 (215)
T 1oga_D          132 VCLFTDFDSQTNV  144 (215)
T ss_dssp             EEEEESCCTTCCC
T ss_pred             EEEccccccCccc
Confidence            999988 788866

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.32  E-value=2.3e-11  Score=77.69  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-~~~~   84 (238)
                      .+...|..+.+.+|+++.|.|.+..                          .|.+.+.|+++...  .  +.... ....
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~--------------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~~   56 (108)
T 1jhl_L            3 ELTQSPSYLVASPGETITINCRASK--------------------------SISKSLAWYQEKPGKTNNLLIYSGSTLQS   56 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESS--------------------------CCTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             ceeccCCeeEEcCCCCEEEEeEECC--------------------------CCCceEEEEEECCCCCCEEEEEcCCCcCC
Confidence            4566788899999999999999963                          23456999996421  1  11100 0000


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ....|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (108)
T 1jhl_L           57 GIPSRFSGSG-SGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             TCCTTEEEEE-SSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             CCCceEEEEe-cCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            1246777654 446679999999999999999999764

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.32  E-value=1.4e-11  Score=76.84  Aligned_cols=82  Identities=20%  Similarity=0.329  Sum_probs=57.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLS   91 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~   91 (238)
                      +.++..+.+.+|+++.|.|.+..                            .+.+.|++++..+.         ...++.
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~~----------------------------~p~v~W~k~g~~~~---------~~~~~~   47 (95)
T 4hwu_A            5 GSQPEAYVVAPGESLELQCMLKD----------------------------AAVISWTKDGVHLG---------PNNRTV   47 (95)
T ss_dssp             ---CEEEEECTTSCEEEECCCCT----------------------------TCEEEEEETTEEEC---------CCSSEE
T ss_pred             ccCCCcEEECCCCEEEEEEEeCC----------------------------CCEEEEEECCEECC---------CCceEE
Confidence            34677888999999999999853                            34699999876532         233444


Q ss_pred             EEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          92 VTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      ....     +|.|.+++.+|+|.|+|.+.+... ....+.+.|..
T Consensus        48 ~~~~-----~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   87 (95)
T 4hwu_A           48 LIGE-----YLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTD   87 (95)
T ss_dssp             EETT-----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             EeCC-----EEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeC
Confidence            4322     899999999999999999987543 33344455543

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=99.32  E-value=2.5e-11  Score=88.08  Aligned_cols=133  Identities=18%  Similarity=0.216  Sum_probs=83.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~   85 (238)
                      +...+..+.+.+|++++|.|.+....                          ...+.||++...    .+.... .....
T Consensus         4 v~Q~p~~v~v~~G~svtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~   57 (229)
T 2q86_A            4 VEQSPQSLVVRQGENCVLQCNYSVTP--------------------------DNHLRWYKQDTGKGLVLLTVLVDQKDKT   57 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSC--------------------------CSCEEEEEECTTCCEEEEEEECSSEEEE
T ss_pred             eEECCCEEEEecCCCEEEEEEECCCC--------------------------CcEEEEEEECCCCCcEEEEEEcCCCCcc
Confidence            45667889999999999999986432                          235999996421    111111 11112


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCc---ccccccCCceeecCCCcEEEE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSAKLV  159 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~~l~  159 (238)
                      ..+||.+.. .....++|+|.+++.+|+|.|+|.+.+...  ....+.|.|.....   +.+..    . ......+.|.
T Consensus        58 ~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~----~-~~~~~~~tL~  132 (229)
T 2q86_A           58 SNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQ----L-KDPRSQDSTL  132 (229)
T ss_dssp             EETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEECCCEEEEEECCCSSCCCEEEE----E-ECTTSTTCEE
T ss_pred             cCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccccCCEEEEEECcCCCCCCEEEE----c-cCCCCCeEEE
Confidence            356888764 345678999999999999999999864321  12234677764211   11100    0 1122378999


Q ss_pred             EEEcc-ccCCeEEEEe
Q psy7941         160 CKAKG-YPTPKITWRR  174 (238)
Q Consensus       160 C~~~~-~p~~~~~W~~  174 (238)
                      |.+.| +|.|.+.|..
T Consensus       133 Cl~~gf~P~p~V~~~~  148 (229)
T 2q86_A          133 CLFTDFDSQINVPKTM  148 (229)
T ss_dssp             EEEEEECTTCCCCCCC
T ss_pred             EEECCcCcCCcccccC
Confidence            99988 7888775543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.32  E-value=5.5e-12  Score=80.93  Aligned_cols=89  Identities=17%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             CCceeecCCCcEEEEEEEccc--cCCeEEEEeCCCeeeEeec-----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY--PTPKITWRREDNKEIIVRS-----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  217 (238)
                      +....+.+|+.+.|.|.+.+.  |.+.+.|+++ +..+....     ...............|.|.++..+|+|.|+|.|
T Consensus        17 p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   95 (112)
T 3so5_A           17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXD-NEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVI   95 (112)
T ss_dssp             CCCEEECTTCCEEEEEEEEESCCCCCEEEEEET-TEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEecCCCCCEEEEEccC-CcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEE
Confidence            444678899999999999864  4679999994 43332110     000000001122357999999999999999999


Q ss_pred             eeCCCCCccceEEEEEE
Q psy7941         218 ANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       218 ~n~~g~~~~~~~~l~V~  234 (238)
                      .|..|...+..+.|.|+
T Consensus        96 ~n~~g~~~s~~~~l~V~  112 (112)
T 3so5_A           96 SNHFGSSYSVXAXLTIN  112 (112)
T ss_dssp             EETTEEEECCCEEEEEC
T ss_pred             EeCCCcEEEeEEEEEeC
Confidence            99999655778888773

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.31  E-value=1.5e-11  Score=76.30  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|.  
T Consensus        12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k-~g~~i~~~~-----~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~--   82 (93)
T 1waa_A           12 LYGVEVFVGETAHFEIELSE-PDVHGQWKL-KGQPLAASP-----DCEIIEDGKKHILILHNCQLGMTGEVSFQAANT--   82 (93)
T ss_dssp             CCCEEEETTSCEEEEEEESS-SSCCCEEEE-TTEECCCBT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEETTE--
T ss_pred             CcceEEeCCCCEEEEEEECC-CCCeEEEEE-CCEECcCCC-----CEEEEEECCEEEEEECCCChhhCEEEEEEECCC--
Confidence            45578899999999999976 457899999 555543221     1111222  237999999999999999999874  


Q ss_pred             CCccceEEEEEEe
Q psy7941         223 PTVSKRLMLHVHC  235 (238)
Q Consensus       223 ~~~~~~~~l~V~~  235 (238)
                         ..+..|.|..
T Consensus        83 ---~~sa~L~V~~   92 (93)
T 1waa_A           83 ---KSAANLKVKE   92 (93)
T ss_dssp             ---EEEEEEEEEC
T ss_pred             ---cEEEEEEEEc
Confidence               3455677754

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.8e-12  Score=79.93  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      +.+.+|+.+.|.|.+.+.|.+ +.|++ ++..+....     ......  ....|.|.++..+|+|.|+|.+.|..+   
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~---   89 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYK-DGQKVEESE-----LLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA---   89 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEE-TTEECCCBT-----TBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC---
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEee-CCEECCCCC-----CEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE---
Confidence            678899999999999999888 99999 555443211     111111  223699999999999999999998643   


Q ss_pred             cceEEEEEEeec
Q psy7941         226 SKRLMLHVHCTY  237 (238)
Q Consensus       226 ~~~~~l~V~~~p  237 (238)
                        .+.|.|..+|
T Consensus        90 --~~~l~V~~~P   99 (104)
T 2e6p_A           90 --FFGVTVQDPS   99 (104)
T ss_dssp             --CEEEEEECCC
T ss_pred             --EEEEEEcCCC
Confidence              5677888776

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.30  E-value=7.1e-12  Score=81.31  Aligned_cols=101  Identities=20%  Similarity=0.328  Sum_probs=64.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe--ecC
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI--TNN   87 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~--~~~   87 (238)
                      +..+..+.+..|++++|.|.+... ...                       ...+.|++++..+.....  ...+  ...
T Consensus         7 v~~~~~v~~~~G~~v~L~C~~~~~-~~~-----------------------~~~v~W~k~~~~i~~~~~~~~~~~~~~~~   62 (117)
T 3q0h_A            7 IETTGNISAEKGGSIILQCHLSST-TAQ-----------------------VTQVNWEQQDQLLAICNADLGWHISPSFK   62 (117)
T ss_dssp             EEESCCEEEETTCCEEECEEEESC-CCE-----------------------EEEEEEEETTEEEEEEETTTEEECCGGGT
T ss_pred             EEccCCEEEecCCCEEEEEEecCC-CCC-----------------------EEEEEEEeCCEEEEEEECCCCceeCcccc
Confidence            345667889999999999999752 111                       235999997643322111  0001  113


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec--CCCcceeeEEEEEcCCccc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT--NPMTKQMAFLEVVIPPDIS  140 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~--~~~~~~~~~l~v~~~~~~~  140 (238)
                      +|+.+.    .+++|.|.+++.+|+|.|+|.+.+  .+.....+.|.|..+|.+.
T Consensus        63 ~R~~~~----~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           63 DRVAPG----PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE  113 (117)
T ss_dssp             TTEEEC----STTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC----
T ss_pred             CcEEeC----CceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCccc
Confidence            566542    134899999999999999999854  2444556789998887653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=84.42  Aligned_cols=100  Identities=18%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             eEEEEEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecC
Q psy7941         129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS  208 (238)
Q Consensus       129 ~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  208 (238)
                      +.|.|..++. .+...+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+........  .........|.|.++..+
T Consensus         5 a~l~V~~~p~-~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~~~~~~--~~~~~~~~~L~I~~v~~~   80 (115)
T 2cr6_A            5 SSGLVQGRRV-HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEI--DAQPGGYHVLTLRQLALK   80 (115)
T ss_dssp             CCCCCCSSCC-EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCSSSCCB--CCBTTTBCCBEECSCCTT
T ss_pred             EEEEEcCCCC-eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCCCcEEE--EEcCCCEEEEEEcCCChh
Confidence            3455554442 12223456788999999999999999999999999 4544432211000  000012347999999999


Q ss_pred             CCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         209 EMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       209 d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |+|.|+|.+    | ....++.|.|..+|
T Consensus        81 D~G~Y~C~~----g-~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           81 DSGTIYFEA----G-DQRASAALRVTEKP  104 (115)
T ss_dssp             TCEEEEEEE----T-TEECCEEEEEECCS
T ss_pred             hCEEEEEEE----C-CeeEEEEEEEECCC
Confidence            999999994    4 33667788888776

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.1e-12  Score=79.69  Aligned_cols=81  Identities=21%  Similarity=0.335  Sum_probs=59.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|   
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   84 (103)
T 2edf_A           15 LEDQWVAPGEDVELRCELSR-AGTPVHWLK-DRKAIRKSQ-----KYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA---   84 (103)
T ss_dssp             CCCEEECTTSCEEECCEESS-SSCCCCEEE-SSCBCCCSS-----SEEEEEETTEEEEEESSCCTTTCSEEEEECSS---
T ss_pred             CCccEEcCCCCEEEEEEEeC-CCCcEEEEE-CCEEccCCC-----CEEEEECCCEEEEEECCCCcccCEEEEEEEcc---
Confidence            34577889999999999987 788999999 444332211     1111111  22699999999999999999998   


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                        .+.++.|.|..+|
T Consensus        85 --~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 --SKSTASLHVEEKA   97 (103)
T ss_dssp             --CEEEEEEEECCCS
T ss_pred             --CCcEEEEEEeCCC
Confidence              2677788888766

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.29  E-value=1.1e-10  Score=78.16  Aligned_cols=103  Identities=19%  Similarity=0.304  Sum_probs=65.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee--eeeeeE-----
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL--AIHEHV-----   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~--~~~~~~-----   83 (238)
                      +..++..+.+..|+++.|.|.+.....                       ...+.+.|++++.....  ......     
T Consensus         9 V~~~~~~v~~~~G~~v~L~C~~~~~~~-----------------------~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~   65 (139)
T 1pko_A            9 VIGPGHPIRALVGDEAELPCRISPGKN-----------------------ATGMEVGWYRSPFSRVVHLYRNGKDQDAEQ   65 (139)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCC-----------------------CTTSEEEEEEC--CCEEEEEETTEECGGGS
T ss_pred             EECCCCCEEEEeCCCEEEeeEccCCCC-----------------------CCceEEEEEECCCCceEEEEeCCccccccc
Confidence            345666889999999999999964221                       11356999997642111  111100     


Q ss_pred             -eecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcC
Q psy7941          84 -ITNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIP  136 (238)
Q Consensus        84 -~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~  136 (238)
                       ....+|+.+...  ..+.++|.|.+++.+|+|.|+|.+.+... ....+.|.|..|
T Consensus        66 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P  122 (139)
T 1pko_A           66 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  122 (139)
T ss_dssp             CSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             CcccCCceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence             011356666543  23567999999999999999999977533 344556777743

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.29  E-value=2.4e-11  Score=81.99  Aligned_cols=92  Identities=17%  Similarity=0.334  Sum_probs=66.0

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-CCCCcceEEE----eeceEEEEEeecCCCeEEEEEee
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-PPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      .+..+.+..|+++.|.|.+.+.|.+.+.|++.+...+..... ..........    ....|.|.++..+|+|.|+|.+.
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  123 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIF  123 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEE
Confidence            345678899999999999999888899999644332221110 0011112111    14579999999999999999999


Q ss_pred             eCCCCCccceEEEEEEeec
Q psy7941         219 NGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       219 n~~g~~~~~~~~l~V~~~p  237 (238)
                      |. | ..+..+.|.|..+|
T Consensus       124 n~-~-~~~~~~~L~V~~~P  140 (145)
T 1z9m_A          124 TM-P-VRTAKSLVTVLGIP  140 (145)
T ss_dssp             SS-S-CEEEEEEEEEECCC
T ss_pred             cC-C-CceEEEEEEEEeCC
Confidence            99 7 55888899998876

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=79.61  Aligned_cols=72  Identities=21%  Similarity=0.354  Sum_probs=56.7

Q ss_pred             ccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           6 GFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         6 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      ..+|.|...+....+.+|+++.|.|.+.                          +.|.+.+.|+|++..+...       
T Consensus         8 ~~~~~i~~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~k~~~~~~~~-------   54 (96)
T 2ens_A            8 LEEVQLVVEPEGGAVAPGGTVTLTCEVP--------------------------AQPSPQIHWMKDGVPLPLP-------   54 (96)
T ss_dssp             CCSCCCEEESTTSEECTTCEEEEECCCS--------------------------SCSSCCCCCEESSSBCSSC-------
T ss_pred             CCCCEEEECCCCCEEcCCCeEEEEEEEc--------------------------cCCCCEEEEEECCEECcCC-------
Confidence            3467888888888899999999999984                          3446679999976653211       


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                                  ...+|.|.+++.+|+|.|+|.+.+.
T Consensus        55 ------------~~~~L~i~~v~~~d~G~Y~C~a~n~   79 (96)
T 2ens_A           55 ------------PSPVLILPEIGPQDQGTYSCVATHS   79 (96)
T ss_dssp             ------------CCSEEEEESCCTTTCEEEECEECCS
T ss_pred             ------------CCCEEEECCCCcccCEEEEEEEEeC
Confidence                        1128999999999999999999874

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.29  E-value=2.2e-11  Score=77.07  Aligned_cols=82  Identities=7%  Similarity=0.064  Sum_probs=54.2

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE--EEE--EcC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL--SVT--HND   96 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~   96 (238)
                      ..|+.+.|.|.+.                          +.|.|.++|++++..+...         .+.  ...  ...
T Consensus        14 ~~~~~~~~~c~v~--------------------------G~P~P~i~W~k~g~~l~~~---------~~~~~~~~~~~~~   58 (103)
T 1wwb_X           14 TSDHHWCIPFTVK--------------------------GNPKPALQWFYNGAILNES---------KYICTKIHVTNHT   58 (103)
T ss_dssp             CCCCEEEEEEEEE--------------------------CSSCCEEEEEETTEEECCC---------SSEEEEEEEECSS
T ss_pred             eECcEEEEEEEEE--------------------------EeCCCEEEEEECCEECCCC---------CcEeEEEEecCCc
Confidence            4577889999985                          4668889999987654321         111  111  111


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                      ....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|..+|
T Consensus        59 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCC
Confidence            1223699999999999999999988643 3445556555444

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.28  E-value=1.8e-11  Score=75.45  Aligned_cols=91  Identities=19%  Similarity=0.268  Sum_probs=62.6

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      .+...+..|+.+.|.|.+.+ .|.|.++|.+.++..................    ....|.+.++...|+|.|+|.|.+
T Consensus        21 ~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~  100 (122)
T 1xau_A           21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF  100 (122)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             eccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeC
Confidence            34456888999999999966 7899999999665433221100000000111    122788999999999999999999


Q ss_pred             CCCCCccceEEEEEEe
Q psy7941         220 GVPPTVSKRLMLHVHC  235 (238)
Q Consensus       220 ~~g~~~~~~~~l~V~~  235 (238)
                      ..|...++++++.|..
T Consensus       101 ~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A          101 NSQVINSHSVTIHVRE  116 (122)
T ss_dssp             TTEEEECCCEEEEEC-
T ss_pred             CCCceeeeEEEEEEEe
Confidence            9987767788777753

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.28  E-value=3.2e-12  Score=82.94  Aligned_cols=103  Identities=16%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             cCCCccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee
Q psy7941           2 VPVRGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE   81 (238)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~   81 (238)
                      |.+...+|.|...+..+.+.+|+++.|.|.+.+                          .|.|.+.|++++..+......
T Consensus         3 l~~~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g--------------------------~P~p~v~W~k~~~~~~~~~~~   56 (117)
T 2v9t_A            3 LRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEG--------------------------RPTPTIEWYKGGERVETDKDD   56 (117)
T ss_dssp             CCCCCEEEEEEECCCCEEECTTCCEEECCEEEE--------------------------ESCCEEEEEETTEECCCTTTC
T ss_pred             cccccCCCeeEcCCCCEEEcCCCcEEEEEECCc--------------------------cCCCeEEEEECCEeccccCCC
Confidence            344567899999999999999999999999853                          456779999987654321100


Q ss_pred             eEeecCccEEEEEcCCCeE--EEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc
Q psy7941          82 HVITNNARLSVTHNDANTW--TLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI  135 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~  135 (238)
                          ...+.. ...+....  .+.+.+++.+|+|.|+|.+.|..+.  ...+.+.+..
T Consensus        57 ----~~~~~~-~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           57 ----PRSHRM-LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             ----SSCSEE-ECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             ----CcceeE-EecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEhhh
Confidence                000111 11111111  2223366899999999999886443  2334455543

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.28  E-value=2.1e-11  Score=79.97  Aligned_cols=91  Identities=18%  Similarity=0.266  Sum_probs=58.4

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeE---
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHV---   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~---   83 (238)
                      ..+..++..+.+..|++++|+|.+......                       ....+.|+|.+.......  ....   
T Consensus         6 ~sVt~~~~~v~g~vG~~v~L~C~~~~~~~~-----------------------~~~~V~W~k~~~~~~v~~~~~g~~~~~   62 (125)
T 4gos_A            6 HSITVTTVASAGNIGEDGILSCTFEPDIKL-----------------------SDIVIQWLKEGVLGLVHEFKEGKDELS   62 (125)
T ss_dssp             CCSCEEEECEEEETTSCEEEEEEECCCSCG-----------------------GGCEEEEEETTCSSBSEEEETTEECCT
T ss_pred             eEEEccCceEEEeCCCCEEEEEEEcCCccc-----------------------CcEEEEEEEeccCceEEEEEeeccccc
Confidence            345566777889999999999998532111                       134589999754322111  1000   


Q ss_pred             ---eecCccEEEEEcC--CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 ---ITNNARLSVTHND--ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 ---~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                         .....|+.+....  .++++|.|.+++.+|+|.|+|.+.+.
T Consensus        63 ~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~~~  106 (125)
T 4gos_A           63 EQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITS  106 (125)
T ss_dssp             TBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ccCccccceEEEecCCccCCeEEEEECCCChHHCEEEEEEEEeC
Confidence               1113455554322  24679999999999999999999765

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.28  E-value=8.9e-11  Score=75.59  Aligned_cols=98  Identities=14%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-eeEeecC
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-EHVITNN   87 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~~~~~~~   87 (238)
                      ..+..+.+.+|++++|.|.+.....                         ...+.|+++....    +.... .......
T Consensus         6 ~~p~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~   60 (113)
T 1zox_A            6 TGPEEVSGQEQGSLTVQCRYTSGWK-------------------------DYKKYWCQGVPQRSCKTLVETDASEQLVKK   60 (113)
T ss_dssp             ECCSEEEEETTSCEEEEEEECGGGT-------------------------TSCEEEEESSSGGGCEEEEECCSSSCCEEE
T ss_pred             CCCCEEEEeCCCcEEEEeECCCCcc-------------------------cceEEEEeCCCCCCCeEEEEecCccccccC
Confidence            3466789999999999999964211                         2249999975321    11111 0001224


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      +|+.+... ..+.++|.|.+++.+|+|.|.|.+.+.+. ....+.|.|..
T Consensus        61 ~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (113)
T 1zox_A           61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGP  110 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEEC
T ss_pred             CCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEc
Confidence            67777643 44678999999999999999999976542 23344555543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-12  Score=81.56  Aligned_cols=85  Identities=18%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.| +.+.|++ ++..+........ .......  ...|.|.++..+|+|.|+|.|.|.  
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k-~g~~i~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~--   89 (101)
T 2edk_A           15 LEDQQVFVGDRVEMAVEVSEEG-AQVMWMK-NGVELTREDSFKA-RYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG--   89 (101)
T ss_dssp             CCCEEEESSCCCBCCEEESCSS-CCCEEEE-SSCBCCCSCCSSC-CCEEEECSSEEEEECSSCCGGGCSBEEEECSSC--
T ss_pred             CCceEEcCCCCEEEEEEEeCCC-CEEEEEE-CCEECCCCCCcce-eEEEEECCCEEEEEECCCChhhCEEEEEEEcCC--
Confidence            4457789999999999999988 9999999 4444322110000 1111112  236999999999999999999872  


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                         +.+..|.|..+|
T Consensus        90 ---~~~~~l~V~~~P  101 (101)
T 2edk_A           90 ---QCEAELIVEEKQ  101 (101)
T ss_dssp             ---EECCBEEEECCC
T ss_pred             ---cEEEEEEEeCCC
Confidence               344567787766

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.27  E-value=5.1e-11  Score=77.52  Aligned_cols=83  Identities=8%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc-----
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN-----   95 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   95 (238)
                      ..+..+.|.|.+.                          +.|.|.++|+|++..+..         +.++.....     
T Consensus        13 ~~~~~~~l~c~v~--------------------------G~P~P~I~W~knG~~l~~---------~~~~~~~~~~~~~~   57 (126)
T 1he7_A           13 VEMHHWCIPFSVD--------------------------GQPAPSLRWLFNGSVLNE---------TSFIFTEFLEPAAN   57 (126)
T ss_dssp             CCCCEEEEEEEEC--------------------------CSSCCEEEEEETTEECCC---------CSSEEEEEECCCSS
T ss_pred             ccCccEEEEEEEe--------------------------eeCCCeEEEEECCEECCC---------CCceeEEEeecccc
Confidence            3677889999984                          567899999998766432         222211110     


Q ss_pred             -CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCc
Q psy7941          96 -DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPD  138 (238)
Q Consensus        96 -~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~  138 (238)
                       .....+|.|.+++..|+|.|+|.|.|.. .....+.+.|...|.
T Consensus        58 ~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             CCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             ccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence             0123589999999999999999998864 344455566655553

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.27  E-value=4.1e-11  Score=75.39  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=58.5

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ..+.+|+.+.|.|.+. .|.+.+.|+++ +..+....     .......  ...|.|.++..+|+|.|+|.|    | ..
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~-g~~i~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g-~~   85 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKN-GQEIRPST-----KYIFEHKGCQRILFINNCQMTDDSEYYVTA----G-DE   85 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEES-SCBCCCBT-----TEEEEEETTEEEEEEEEECTTTCCEEEEEE----T-TE
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEEC-CEECCCCC-----CEEEEecCCEEEEEEcCCCcCcCEEEEEEE----C-Cc
Confidence            5678999999999998 68899999994 44332211     1111111  236999999999999999999    5 34


Q ss_pred             cceEEEEEEeecC
Q psy7941         226 SKRLMLHVHCTYL  238 (238)
Q Consensus       226 ~~~~~l~V~~~p~  238 (238)
                      +.++.|.|..+|.
T Consensus        86 ~~~~~l~V~~~P~   98 (100)
T 2yuv_A           86 KCSTELFVRSGPS   98 (100)
T ss_dssp             EEEEEEEECCSCC
T ss_pred             eEEEEEEEecCCC
Confidence            7788899998874

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.27  E-value=3.3e-11  Score=77.11  Aligned_cols=88  Identities=18%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeeeeeE
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIHEHV   83 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~~~~   83 (238)
                      .+.+...|..+.+.+|++++|.|.+...                          +.+.+.|+++.. . .  +.......
T Consensus         3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~   56 (109)
T 2q20_A            3 DIQMTQSPSSLSASVGDRVTITCQASQD--------------------------ISNYLNWYQQKPGKAPKLLIYDASNL   56 (109)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCEEEEEETTTEE
T ss_pred             CccEEeeCCEEEecCCCcEEEEEeeccC--------------------------CCCcEEEEEECCCCCCEEEEEEcCcc
Confidence            3566777888999999999999999632                          245699999642 1 1  11110000


Q ss_pred             -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                       ....+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus        57 ~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           57 ETGVPSRFSGSG-SGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCCCcEEEec-cCCEEEEEECCCChhhCEEEEEEEeeC
Confidence             01246777754 346679999999999999999999653

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.27  E-value=6.1e-11  Score=77.20  Aligned_cols=87  Identities=18%  Similarity=0.274  Sum_probs=59.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee-eEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE-HVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~-~~~   84 (238)
                      .+...|..+.+.+|++++|.|.+...                          +.+.+.||++..  ..  +..... ...
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~g~~~~~li~~~~~~~~   56 (120)
T 1mqk_L            3 ELTQTPVSLSASVGETVTITCRASEN--------------------------IYSYLAWYQQKQGKSPQFLVYNAKTLGE   56 (120)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             ceEecCCeEEEcCCCcEEEEEEeCCC--------------------------CCceEEEEEECCCCCCEEEEEeCCcCCC
Confidence            35567888999999999999999632                          235699999642  11  111100 001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+..
T Consensus        57 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (120)
T 1mqk_L           57 GVPSRFSGSG-SGTQFSLKINSLLPEDFGSYYCQHHYGT   94 (120)
T ss_dssp             TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCceEEEec-cCCEEEEEECCCCHHHCEEEEEEEEeCC
Confidence            1246787754 3456799999999999999999997643

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=77.69  Aligned_cols=72  Identities=14%  Similarity=0.322  Sum_probs=53.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      ...++..+.+.+|+++.|.|.+..                          .| +.+.|+|++..+..         ..++
T Consensus         6 ~~~~p~~~~v~~G~~v~L~C~~~g--------------------------~p-p~i~W~k~g~~~~~---------~~~~   49 (99)
T 2cr3_A            6 SGVEVESFLVHPGDLLQLRCRLRD--------------------------DV-QSINWLRDGVQLAE---------SNRT   49 (99)
T ss_dssp             CSCCEEECCBCTTSCEEEECCCCS--------------------------SC-CEEEEEESSSBCCC---------CSSE
T ss_pred             CCCCCcCeEEeCCCcEEEEEEecC--------------------------CC-CeEEEEECCEECCC---------CCcE
Confidence            345577788999999999999853                          22 47999998755321         2234


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .+..     .+|.|.+++.+|+|.|+|.+.|..
T Consensus        50 ~~~~-----~~L~i~~v~~~D~G~Y~C~a~n~~   77 (99)
T 2cr3_A           50 RITG-----EEVEVQDSVPADSGLYACVTSSPS   77 (99)
T ss_dssp             EECS-----SEEEETTCCTTTCEEEEEEEEETT
T ss_pred             EEEC-----CEEEEccCCHHHCEEEEEEEEeCC
Confidence            3331     289999999999999999998753

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=99.26  E-value=2.3e-13  Score=97.41  Aligned_cols=174  Identities=17%  Similarity=0.227  Sum_probs=55.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~~   85 (238)
                      +...+..+.+.+|+++.|.|.+....                           ..+.||++...    .+... ......
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~~~---------------------------~~v~W~rq~~g~~~~~l~~~~~~~~~~   56 (207)
T 1ymm_D            4 GEEDPQALSIQEGENATMNCSYKTSI---------------------------NNLQWYRQNSGRGLVHLILIRSNEREK   56 (207)
T ss_dssp             -----CCCCCSSCCCCCBCCBCSSCE---------------------------EEEEEECCCSSCCCCCCCEEESSSCCC
T ss_pred             eEECCCEEEEeCCCCEEEEEEecCCC---------------------------ceEEEEEECCCCCcEEEEEEcCCCccc
Confidence            34557778899999999999985422                           34999996521    11111 111112


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC---C--cceeeEEEEEcCCc---ccccccCCceeecCCCcE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP---M--TKQMAFLEVVIPPD---ISSEETSGDMMVPEGGSA  156 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~--~~~~~~l~v~~~~~---~~~~~~~~~~~~~~g~~~  156 (238)
                      ..+||.+.. .....++|.|.+++.+|+|.|+|.+.+..   .  ....+.|.|.....   +.+.. .   . .....+
T Consensus        57 ~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~-~---~-~~~~~v  131 (207)
T 1ymm_D           57 HSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQ-L---R-DSKSSD  131 (207)
T ss_dssp             CSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTSCSCEEECC--------------------------------
T ss_pred             cCCCEEEEEcCCCCEEEEEECcCCcccCceEEEEEEcCCCcceeeECCCEEEEEECCCCCCCCEEEe-c---C-CCCCCe
Confidence            356776653 23356799999999999999999996531   1  11223455543211   11100 0   0 112378


Q ss_pred             EEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         157 KLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       157 ~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|.|.+.| +|.|.+.... +. .............   ...+. .+......+..+|+|.+.+..+
T Consensus       132 tL~C~~~gf~P~p~v~~~~-~~-~~~~t~~~~~~~~---~~~S~-t~~~~~w~~~~~~tC~V~~~~~  192 (207)
T 1ymm_D          132 KSVCLFTDFDSQTNVSQSK-DS-DVYITDKTVLDMR---SMDFK-SNSAVAWSNKSDFACANAFNNS  192 (207)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             EEEEEccccccCCcccccc-cc-ceeecCCceeccc---ccccc-ccchhhcCCCCceEEEEEeCCc
Confidence            99999988 7888763322 11 1100000000000   11223 4455566667799999987643

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.26  E-value=2.6e-11  Score=79.35  Aligned_cols=99  Identities=24%  Similarity=0.367  Sum_probs=59.7

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee---ee-e-eeE----
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL---AI-H-EHV----   83 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~---~~-~-~~~----   83 (238)
                      ..++.+.+..|++++|+|.+....+..                       ...+.|+|.......   .. . ...    
T Consensus         5 ~~p~~vtv~~G~~v~L~C~~~~~~~~~-----------------------~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~   61 (123)
T 4gjt_B            5 ETSDVVTVVLGQDAKLPCFYRGDSGEQ-----------------------VGQVAWARVDAGEGAQELALLHSKYGLHVS   61 (123)
T ss_dssp             ECCSEEECCTTSEEEECCEECCCTTCC-----------------------EEEEEEEECCCSSCCCEEEEECSSSCCCBC
T ss_pred             EcCCEEEEEcCCCEEEEEEEeCCccCc-----------------------eeEEEEEEcCCCCCcceeEEEEecCCcEeC
Confidence            456788999999999999986533221                       235899986432111   00 0 000    


Q ss_pred             eecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE
Q psy7941          84 ITNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV  134 (238)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~  134 (238)
                      ....+|+.+...  ...+++|.|.+++.+|+|.|+|.+.+....  ...+.|+|.
T Consensus        62 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           62 PAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             GGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred             ccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence            011345554332  235678999999999999999998654332  333445543

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.1e-11  Score=75.68  Aligned_cols=91  Identities=20%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             cccceecc---CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           7 FEPDFLYP---LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         7 ~~p~~~~~---~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      .++.|...   +..+.+.+|+++.|.|.+.                           .|.+.+.|+|++..+..      
T Consensus         7 pp~~~~~~~~~~~~~~v~~G~~v~L~C~~~---------------------------~p~~~v~W~k~g~~~~~------   53 (102)
T 2eo1_A            7 GKVVFAKEQPAHREVQAEAGASATLSCEVA---------------------------QAQTEVTWYKDGKKLSS------   53 (102)
T ss_dssp             CCCCSCSSCCSCEEEEEETTCCEEECCBCS---------------------------CSSSCCEEEETTEECCC------
T ss_pred             CCEEecCcCCCcccEEEeCCCcEEEEEEec---------------------------CCCCceEEEECCEECCC------
Confidence            34455544   3466899999999999984                           23567999998765421      


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEcCC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVIPP  137 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~~  137 (238)
                         ..++.+... ....+|.|.+++.+|+|.|+|.+.+.   ...+.|.|..++
T Consensus        54 ---~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~~~---~~~~~l~V~~p~  100 (102)
T 2eo1_A           54 ---SSKVRVEAV-GCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAGQC  100 (102)
T ss_dssp             ---CSSEEEEEE-TTEEEEEETTCCTTTCSCEEEEETTE---ECCEEEEEESCC
T ss_pred             ---CCCEEEEEc-CCEEEEEECCCCcccCEEEEEEcCCC---cEEEEEEEeCCC
Confidence               234444332 23348999999999999999998432   334667777654

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.26  E-value=4.1e-11  Score=80.31  Aligned_cols=86  Identities=19%  Similarity=0.356  Sum_probs=59.5

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~-~~~~   84 (238)
                      .+...+..+.+.+|++++|.|.+....                          ...+.||+...    ..+.... ....
T Consensus         2 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~~~   55 (143)
T 3u6r_L            2 ELTQSPATLSLSPGERATLSCRASQSV--------------------------NKYLAWYQQKPGQAPRLLIYDASNRAT   55 (143)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCC--------------------------TTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             eEEECCCEEEEeCCCCEEEEEEECCCC--------------------------ceeeEEEEECCCCCCEEEEEeCCccCC
Confidence            356778889999999999999996432                          23599999632    1111111 1111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ....||.+.. ....++|+|.+++.+|+|.|+|.+.+.
T Consensus        56 ~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~   92 (143)
T 3u6r_L           56 GIPARFSGSG-SGTDFTLTISNLEPEDFAVYYCQQRSD   92 (143)
T ss_dssp             TCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CccCcEeEEc-cCCEEEEEEccCcccCCEEEEEEEecC
Confidence            1256787763 446779999999999999999998654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=3.6e-11  Score=77.40  Aligned_cols=78  Identities=19%  Similarity=0.326  Sum_probs=58.6

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      +.+..|+.+.|.|.+. .|.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.+.|     .
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~   90 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTK-DGEEVVESP-----ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----E   90 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEE-TTEECCCBT-----TBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----C
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEE-CCEECccCC-----CEEEEECCCEEEEEECCCCcccCEEEEEEEec-----C
Confidence            5677899999999995 7888999999 555443211     1111212  24799999999999999999998     3


Q ss_pred             cceEEEEEEeec
Q psy7941         226 SKRLMLHVHCTY  237 (238)
Q Consensus       226 ~~~~~l~V~~~p  237 (238)
                      +..+.|.|..+|
T Consensus        91 ~~~~~l~V~~~p  102 (113)
T 2cpc_A           91 SASFTVTVTEPP  102 (113)
T ss_dssp             EEEEEEEEECCC
T ss_pred             cEEEEEEEecCC
Confidence            678888898877

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=6.4e-12  Score=79.76  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             cCCceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ......+.+|+.+.|.|.+.+.|. +.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.| 
T Consensus        14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k-~g~~i~~~~-----r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~-   86 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSS-----RFQATRQGRKYILVVREAAPSDAGEVVFSVRG-   86 (104)
T ss_dssp             CCCCEEEESSCCEEEEEECSSCCCSSCBCCBS-SSSBCSBCS-----SCEEEEETTEEEEEECSCCTTTCSCEEEEETT-
T ss_pred             cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEE-CCEECCCCC-----CEEEEEcCCEEEEEECCCCHHHCEEEEEEECC-
Confidence            345678899999999999988775 4899999 444443211     1111111  23799999999999999999854 


Q ss_pred             CCCCccceEEEEEEeecC
Q psy7941         221 VPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       221 ~g~~~~~~~~l~V~~~p~  238 (238)
                          ...+..|.|..+|.
T Consensus        87 ----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           87 ----LTSKASLIVRERSG  100 (104)
T ss_dssp             ----EEEEECEEEECCCS
T ss_pred             ----eeEEEEEEEeCCCc
Confidence                25677888888773

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.26  E-value=1.3e-10  Score=83.11  Aligned_cols=88  Identities=22%  Similarity=0.268  Sum_probs=65.0

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV   92 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~   92 (238)
                      ..+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+.         ...++.+
T Consensus       122 ~~~~~~~v~~g~~~~l~C~~~--------------------------g~p~p~v~W~~~~~~~~---------~~~~~~~  166 (212)
T 2r15_A          122 GLPDVVTIQEGKALNLTCNVW--------------------------GDPPPEVSWLKNEKALA---------QTDHCNL  166 (212)
T ss_dssp             BCCSEEEEETTCCEEEEEEEE--------------------------CSSCCEEEEEETTEEEC---------CCSSEEE
T ss_pred             cCCCcEEEccCCeEEEEEEEc--------------------------CCCCceEEEEECCeECc---------cCCCEEE
Confidence            456678899999999999985                          34577899999876532         2345555


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      ........+|.|.+++.+|+|.|+|.+.|... ....+.|.|..
T Consensus       167 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            55445556999999999999999999987643 34455566654

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.25  E-value=2.2e-10  Score=93.88  Aligned_cols=181  Identities=13%  Similarity=0.219  Sum_probs=99.2

Q ss_pred             eeccCceeE-EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eEeecCc
Q psy7941          11 FLYPLENVT-IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HVITNNA   88 (238)
Q Consensus        11 ~~~~~~~~~-v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~   88 (238)
                      |...+...- +..+++..|+|.+......                      ...++|+|++++..+...... .....++
T Consensus       345 fl~~~~~~~~~~~~~~~~l~C~~~~~~p~----------------------~~~i~v~W~~~~~~~~~~~t~~~~~~~n~  402 (551)
T 1ntl_A          345 FIFPPKPKDVLTITLTPKVTCVVVDISKD----------------------DPEVQFSWFVDDVEVHTAQTQPREEQFNS  402 (551)
T ss_pred             EEcCCCcccceeeccCcceEEEEEecccC----------------------CCceEEEEEECCccccccccCCceECCCC
Confidence            333344333 6678889999998753221                      012579999987654321111 1111233


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc-c--eeeEEEE--EcCCcccccccCCceeecCCCcEEEEEEEc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT-K--QMAFLEV--VIPPDISSEETSGDMMVPEGGSAKLVCKAK  163 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~--~~~~l~v--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  163 (238)
                      .+.+.+      .|.|......|.+.|+|++.+.... .  ..+.+.+  ..+|.+......  ..+..++.+.|.|.+.
T Consensus       403 ~~~~~s------~L~i~~~~~~~~~~y~C~v~~~~~~~~~~~~~~~~~~~~~~P~V~~~~~~--~~~~~~~~~~L~C~v~  474 (551)
T 1ntl_A          403 TFRSVS------ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMIT  474 (551)
T ss_pred             eEEEEE------eeEcCHHHccCCceEEEEEecCCCCCCeEEEEecCCCCCcCCceEEeCCC--hhhccCCceEEEEEEE
Confidence            444433      7888877777889999999775432 1  1222222  244544332111  2234688899999999


Q ss_pred             c-ccCC-eEEEEeCCCeeeEeecCCCC--CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         164 G-YPTP-KITWRREDNKEIIVRSNPPS--SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       164 ~-~p~~-~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      | +|.. .|+|++ ++..+........  ...-.....+.|.+..-...+.+.|+|.+.|...
T Consensus       475 gfyP~~i~v~W~k-~g~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~~~~ytC~V~h~~l  536 (551)
T 1ntl_A          475 DFFPEDITVEWQW-NGQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  536 (551)
T ss_pred             EeECCCCEEEEEE-CCEEccCceeccceeCCCCCEEEEEEEEEcHHHcCCCCeEEEEEEECCC
Confidence            9 6653 899999 5544321110000  0000011122344443334457799999999764

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.25  E-value=1.4e-11  Score=82.25  Aligned_cols=93  Identities=15%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CccccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-
Q psy7941           5 RGFEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-   83 (238)
Q Consensus         5 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-   83 (238)
                      ...+|.|...+..+.+.+|+++.|.|.+.                          +.|.+.+.|++++........... 
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~~~~~~   71 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAV--------------------------GSPVPEIQWWFEGQGPNDICSQLWD   71 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEEEESSTTCCCEECCT
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEe--------------------------eecCCeEEEEECCCCccccceeecc
Confidence            45689999999999999999999999985                          345678999996553321100000 


Q ss_pred             eecCccEEEEE--cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          84 ITNNARLSVTH--NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      -....++....  ......+|.|.+++.+|+|.|+|.+.|..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  113 (137)
T 3qr2_A           72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDP  113 (137)
T ss_dssp             THHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECCT
T ss_pred             cCcccceEEecccccccceEEEECCCCcccCEEEEEEEEecC
Confidence            00011222221  11234599999999999999999998753

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.25  E-value=4.6e-11  Score=77.69  Aligned_cols=87  Identities=17%  Similarity=0.296  Sum_probs=60.5

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee-eeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH-EHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~-~~~   83 (238)
                      +.+...+..+.+.+|++++|.|.+...                          +.+.+.|+++..  ..  +.... ...
T Consensus         4 ~~v~q~p~~v~v~~G~~vtL~C~~~~~--------------------------~~~~v~W~r~~~g~~~~~l~~~~~~~~   57 (119)
T 2e27_L            4 IQMTQSPSSLSASLGGKVTITCKANQD--------------------------IKKKIAWYQHKPGKGPRLLIYYTSTLK   57 (119)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEEC
T ss_pred             ceeEecCCeEEEeCCCCEEEEEEeCCC--------------------------CCceEEEEEECCCCCCEEEEEECCccC
Confidence            456677888999999999999998642                          245699999642  11  11110 000


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ....+||.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        58 ~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           58 SGISSRFSGSG-SGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             TTSCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             CCCCCcEEEEc-cCCEEEEEECCCChHHCEEEEEEEccC
Confidence            11246787754 355779999999999999999999653

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=99.25  E-value=1.3e-10  Score=75.84  Aligned_cols=90  Identities=18%  Similarity=0.343  Sum_probs=60.5

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~   84 (238)
                      .+...+..+.+.+|++++|.|.+.....                        ....+.|++....    ..... .....
T Consensus        12 ~~~~~~~~v~~~~G~svtL~C~~s~~~~------------------------~~~~v~W~rq~~~~~~~~li~~~~~~~~   67 (122)
T 1hkf_A           12 QAQSKAQVLQSVAGQTLTVRCQYPPTGS------------------------LYEKKGWCKEASALVCIRLVTSSKPRTM   67 (122)
T ss_dssp             ---CCCEEEEECTTCCEEEEEECCCCTT------------------------CCCEEEEEEEEETTEEEEEEEECSTTCC
T ss_pred             hhccCCceEEEecCCCEEEEeEccCCCC------------------------cccEEEEEcCCCCCCceEEEEeCCeEeE
Confidence            4567788899999999999999864211                        1235899996421    11111 11112


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...+||.+.. .....++|+|.+++.+|+|.|.|.+....
T Consensus        68 ~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           68 AWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS  107 (122)
T ss_dssp             BCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             eecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCC
Confidence            2357888764 34578899999999999999999997654

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.25  E-value=3.4e-11  Score=77.94  Aligned_cols=100  Identities=15%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------eeeeee-e-eEe
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AVLAIH-E-HVI   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~~~~~-~-~~~   84 (238)
                      .++..+.+.+|+++.|.|.+.....                         ...+.|++....      ...... . ...
T Consensus         2 ~~~~~v~~~~G~~v~L~C~~~~~~~-------------------------~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~   56 (116)
T 2or8_A            2 DSYVEVKGVVGHPVTLPCTYSTYRG-------------------------ITTTCWGRGQCPSSACQNTLIWTNGHRVTY   56 (116)
T ss_dssp             CCCEEEEEETTSCEEECCBCCCTTC-------------------------CCCEEEEESCCCSSSCTTEEEEECSSSEEE
T ss_pred             CCcceEEEEeCCcEEEEEEeeCCCC-------------------------CcEEEEEEECCCCCCceEEEEEeCCcccCc
Confidence            3567789999999999999863211                         235999997521      111111 0 112


Q ss_pred             ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc-ceeeEEEEEcCC
Q psy7941          85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT-KQMAFLEVVIPP  137 (238)
Q Consensus        85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~~  137 (238)
                      ...+|+.+... ....++|.|.+++.+|+|.|+|.+.+.... ...+.+.|.+.|
T Consensus        57 ~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           57 QKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             ESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             CCCCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence            34567765422 335678999999999999999999765432 235555655544

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=99.25  E-value=4.2e-11  Score=84.76  Aligned_cols=130  Identities=13%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e-e--eeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K-A--VLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~-~--~~~~~-~~~~~   85 (238)
                      +...+..+.+.+|+++.|.|.+....                          ...+.||+... . +  +.... .....
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~   57 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTYQSTY--------------------------SPFLFWYVQHLNEAPKLLLKSFTDNKRP   57 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSS--------------------------SCCEEEEEECTTSCCEEEEESCSSTTCC
T ss_pred             cEecCCEEEEecCCCEEEEEEeCCCC--------------------------CceEEEEEeCCCCCeEEEEEEcCCCCcc
Confidence            45667889999999999999987432                          23599999642 1 1  11110 01112


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC---CC---cceeeEEEEEcCC---cccccccCCceeecCCCc
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN---PM---TKQMAFLEVVIPP---DISSEETSGDMMVPEGGS  155 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~---~~---~~~~~~l~v~~~~---~~~~~~~~~~~~~~~g~~  155 (238)
                      ..+||.+... ....++|.|.+++.+|+|.|+|.+.+.   ..   ....+.|.|...+   .+.+..     .......
T Consensus        58 ~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~-----~~~~~~~  132 (194)
T 1lp9_E           58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQ-----LKDPRSQ  132 (194)
T ss_dssp             CCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCCEEEEEECCCSSCCCEEEE-----EECTTSS
T ss_pred             cCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEecccCCcceeeeccCceEEecCcCCCCCCeeEe-----cCCCCCC
Confidence            2567776532 235679999999999999999999652   11   1123467776422   111100     0111236


Q ss_pred             EEEEEEEcc-ccCCeEE
Q psy7941         156 AKLVCKAKG-YPTPKIT  171 (238)
Q Consensus       156 ~~l~C~~~~-~p~~~~~  171 (238)
                      +.|.|.+.+ +|.+.+.
T Consensus       133 ~tL~Cl~~gf~P~~~V~  149 (194)
T 1lp9_E          133 DSTLCLFTDFDSQINVP  149 (194)
T ss_dssp             SCEEEEEESCCTTSCCC
T ss_pred             cEEEEEeecccCCcccc
Confidence            899999988 7888773

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.24  E-value=1.3e-10  Score=76.65  Aligned_cols=102  Identities=21%  Similarity=0.381  Sum_probs=66.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee--eEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE--HVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~--~~~   84 (238)
                      ++..+..+.+.+|++++|.|.+....+                         ...+.||+...  ..  +.....  ...
T Consensus         4 ~~Q~P~~~~v~~G~~vtL~C~~s~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~~   58 (129)
T 3rrq_A            4 PTFSPALLVVTEGDNATFTCSFSNTSE-------------------------SFVLNWYRMSPSNQTDKLAAFPEDRSQP   58 (129)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCCC--------------------------CEEEEEEEEESTTSCEEEEEETC-----
T ss_pred             cEECCCEEEEeCCCCEEEEeEecCCCC-------------------------CcEEEEeEeCCCCCccEEEEEcCCccCC
Confidence            356788899999999999999864321                         23589998521  11  111110  111


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCC-c----ceeeEEEEEcCC
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-T----KQMAFLEVVIPP  137 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~----~~~~~l~v~~~~  137 (238)
                      ...+||.+.. .....++|+|.+++.+|+|.|+|.+.+... .    ...+.|.|...+
T Consensus        59 ~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           59 GQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             ---CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            1246888775 344678999999999999999999976432 1    345678887544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.24  E-value=2.6e-11  Score=84.77  Aligned_cols=87  Identities=29%  Similarity=0.467  Sum_probs=65.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEEEeeeC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....     .......    ...|.|.++..+|.|.|+|.+.|.
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   82 (182)
T 1rhf_A            9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLD-----QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   82 (182)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSE-----EEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CcceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCCCC-----ceEEEecCCCceEEEEEeecCcccCeEEEEEEEcC
Confidence            445678899999999999999999999999 554432210     1111111    357999999999999999999998


Q ss_pred             CCCCccceEEEEEEeec
Q psy7941         221 VPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       221 ~g~~~~~~~~l~V~~~p  237 (238)
                      .|...+..+.|.|..+|
T Consensus        83 ~~~~~~~~~~l~V~~~p   99 (182)
T 1rhf_A           83 GETEISQPVWLTVEGVP   99 (182)
T ss_dssp             TTCEECCCEEEEEECSC
T ss_pred             CCcEEEEEEEEEEecCC
Confidence            77556788889998766

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.24  E-value=4.8e-11  Score=76.47  Aligned_cols=99  Identities=18%  Similarity=0.307  Sum_probs=63.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeeeeeEeecCcc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIHEHVITNNAR   89 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~~~~~~~~~~   89 (238)
                      .|..+.+.+|++++|.|.+....                         ....+.|++.....    +...........+|
T Consensus         2 ~p~~v~~~~G~~v~L~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R   56 (110)
T 2q87_A            2 KARTVAGPVGGSLSVQCPYEKEH-------------------------RTLNKYWCRPPQIFLCDKIVETKGSAGKRNGR   56 (110)
T ss_dssp             EEEEEEECTTSCEEEEEECCGGG-------------------------TTSEEEEESCCSSSSCCCSEESSSTTCSEETT
T ss_pred             CCcEEEEeCCCcEEEEeEecCCc-------------------------CCceEEEEecCCCCCCeEEEEeCCccccccCC
Confidence            35678899999999999986421                         12459999965211    11100000012467


Q ss_pred             EEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-C--cceeeEEEEEcCC
Q psy7941          90 LSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-M--TKQMAFLEVVIPP  137 (238)
Q Consensus        90 ~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~~  137 (238)
                      +.+... ....++|+|.+++.+|+|.|+|.+.+.. .  ......+.|.+.|
T Consensus        57 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           57 VSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             EEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence            777643 4467899999999999999999997653 1  2344556666554

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=86.94  Aligned_cols=87  Identities=22%  Similarity=0.387  Sum_probs=65.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+....    ......   .....|.|.++..+|.|.|+|.|.|..
T Consensus        25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~-~g~~l~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~   99 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSSN----YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI   99 (215)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCEEEEEE-TTEESSCSS----SCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSS
T ss_pred             CceEEEECCCCEEEEEEEeecCCCEEEEEE-CCeECCCCC----CccEEEecCCCeeEEEEecCChhhCeEEEEEEEECC
Confidence            344678899999999999999999999999 555443211    011111   124589999999999999999999999


Q ss_pred             CCCccceEEEEEEeec
Q psy7941         222 PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p  237 (238)
                      |.. +..+.|.|..+|
T Consensus       100 g~~-~~~~~l~v~~~P  114 (215)
T 3mtr_A          100 GQE-SLEFILVQADTP  114 (215)
T ss_dssp             CEE-EEEEEEEECCCC
T ss_pred             Cce-EEEEEEEECCCC
Confidence            954 777888887655

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.23  E-value=5.2e-11  Score=84.23  Aligned_cols=88  Identities=30%  Similarity=0.414  Sum_probs=65.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....   .........+  ..|.|.++..+|.|.|+|.+.|..|
T Consensus        11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   86 (197)
T 2j8h_A           11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG   86 (197)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCCCS---SSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             CCccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECccCC---CcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCC
Confidence            445778899999999999999999999999 554443211   1111111122  2799999999999999999999988


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . .+..+.|.|..+|
T Consensus        87 ~-~~~~~~l~V~~~p  100 (197)
T 2j8h_A           87 S-VSGTASLEVEVPA  100 (197)
T ss_dssp             E-EEEEEEEEEEEEE
T ss_pred             c-eeEEEEEEEcCCC
Confidence            4 4788888888765

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.23  E-value=1.3e-11  Score=82.38  Aligned_cols=88  Identities=23%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             cCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC-CC--CcceE------EEeeceEEEEEe
Q psy7941         135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP-PS--SQKVF------SVESEVLSLTKV  205 (238)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~-~~--~~~~~------~~~~~~l~i~~~  205 (238)
                      .+|.+..  .+....+.+|+.+.|.|.+.|.|.|.+.|++++.......... ..  .....      ....+.|.|.++
T Consensus        20 ~pP~~~~--~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           20 HMAGFVQ--APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             -CCEEEE--CCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCeEEc--CCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            4455543  2455778899999999999999999999999443211100000 00  00111      113458999999


Q ss_pred             ecCCCeEEEEEeeeCCCCC
Q psy7941         206 TRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       206 ~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+|+|.|+|.|.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999999854

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.22  E-value=6.2e-11  Score=75.57  Aligned_cols=86  Identities=15%  Similarity=0.329  Sum_probs=59.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeeeE-e
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEHV-I   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~~-~   84 (238)
                      .+...|..+.+.+|++++|.|.+...                          +.+.+.|+++..  ..  +....... .
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~   56 (107)
T 1i8k_A            3 ELTQSPASLSVATGEKVTIRCMTSTD--------------------------IDDDMNWYQQKPGEPPKFLISEGNTLRP   56 (107)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             ceEeCCCeEEecCCCCEEEEEEECCC--------------------------CCCcEEEEEECCCCCCEEEEEecCccCC
Confidence            45667888999999999999998632                          234699999642  11  11110000 0


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus        57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           57 GVPSRFSSSG-TGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            1246787754 346779999999999999999999654

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=99.22  E-value=4.7e-10  Score=72.64  Aligned_cols=87  Identities=22%  Similarity=0.472  Sum_probs=60.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee--eEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE--HVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~--~~~   84 (238)
                      +...|..+.+.+|++++|.|.+.....                         ...+.||+....    .+.....  ...
T Consensus         2 ~~q~p~~~~v~~G~~vtL~C~~~~~~~-------------------------~~~v~Wyrq~~~~~~~~l~~~~~~~~~~   56 (117)
T 3bp6_A            2 LTFYPAWLTVSEGANATFTCSLSNWSE-------------------------DLMLNWNRLSPSNQTEKQAAFSNGLSQP   56 (117)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT-------------------------TCEEEEEEECTTCCEEEEEEEETTEEEE
T ss_pred             ceecCCcEEEeCCCCEEEEeEeecCCC-------------------------CCEEEEEEeCCCCCceEEEEECCCCccc
Confidence            345678889999999999999964211                         235999996321    1111111  122


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+||.+.. .....++|.|.+++.+|+|.|.|.+...
T Consensus        57 ~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   95 (117)
T 3bp6_A           57 VQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (117)
T ss_dssp             SSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred             cccCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            3467888865 3457889999999999999999998654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.22  E-value=5.1e-11  Score=83.89  Aligned_cols=88  Identities=25%  Similarity=0.411  Sum_probs=66.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+...    .........+..|.|.++..+|.|.|+|.+.|..|..
T Consensus        14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (192)
T 2iep_A           14 LETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLF----DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGA   88 (192)
T ss_dssp             CCEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCTT----CTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             ccceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEcccc----CccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCce
Confidence            344678899999999999999999999999 55443211    1111222334469999999999999999999998865


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      .+..+.|.|..+|
T Consensus        89 ~~~~~~l~v~~~p  101 (192)
T 2iep_A           89 VESCGALQVKMKP  101 (192)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             eEeEEEEEEEeCC
Confidence            5677778887765

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.22  E-value=1e-10  Score=76.86  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=60.8

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~   83 (238)
                      +.+..++..+.+.+|++++|.|.+......                      ...+.+.|||...  .  .+.... ...
T Consensus         2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~r~~~~~~~~~l~~~~~~~~   59 (126)
T 4ffy_L            2 IVLTQSPASLAVSLGQRATISCRASESVDH----------------------YGNSFIYWYQQKPGQPPKLLIYLASNLE   59 (126)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSCCEE----------------------TTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred             CcEEeCCCeEEEeCCCCEEEEEecCCCccc----------------------CCCceEEEEEECCCCCCEEEEEEcCccC
Confidence            456777888999999999999999643200                      0023599999632  1  111110 111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .....||.+.. ....++|+|.+++.+|+|.|+|.+.+.
T Consensus        60 ~~~~~r~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~~~   97 (126)
T 4ffy_L           60 SGVPARFSGSG-SETDFTLTIDSVETDDAATYYCQQNNE   97 (126)
T ss_dssp             TTSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCCcEEEec-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            11246777763 346779999999999999999999654

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.22  E-value=1.2e-10  Score=78.25  Aligned_cols=101  Identities=19%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-ee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EH   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~   82 (238)
                      .+.+..++..+.+.+|++++|.|.+....                          .+.+.||++...    .+.... ..
T Consensus        16 ~~~v~q~p~~v~v~~G~sVtL~C~~s~~~--------------------------~~~v~Wyrq~~g~~~~~li~~~~~~   69 (146)
T 2yc1_B           16 EIVLTQSPATLSVSPGERATLSCRASQSV--------------------------RSYLAWYQQKPGQAPRLLFSDASNR   69 (146)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCC--------------------------TTCEEEEEECTTSCCEEEEETTTEE
T ss_pred             cceEEEeCCEEEEecCCCEEEEEEECCCC--------------------------CCEEEEEEECCCCCCEEEEEeCCcc
Confidence            45667778899999999999999986422                          345999996421    111111 01


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEc
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVI  135 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~  135 (238)
                      ......||.+.. ....++|+|.+++.+|+|.|+|.+.+....  ...+.|.|..
T Consensus        70 ~~~~~~Rfs~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~  123 (146)
T 2yc1_B           70 ATGIPARFTGSG-SGTDFTLTISSLEPEDFAIYYCQQYRYSPRTFGQGTKVEIKR  123 (146)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCCcCCCeEEec-CCCEEEEEECCCCHHHCEEEEEEEecCCCCeECCCEEEEEeC
Confidence            111246887764 345779999999999999999999654221  1234566653

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.22  E-value=5.7e-11  Score=75.12  Aligned_cols=80  Identities=23%  Similarity=0.344  Sum_probs=58.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....+.+|+.+.|.|.+.+.|.+ +.|++ ++..+...      .......++   .|.|.++..+|+|.|+|.    .
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~   82 (103)
T 2e7b_A           15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPG------DKYSLRQEGAMLELVVRNLRPQDSGRYSCS----F   82 (103)
T ss_dssp             CCCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCCCS------SSEEEEECSSEEEEEECSCCTTTCCCEEEE----C
T ss_pred             CccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECCCC------CcEEEEEcCCEEEEEEccCCcccCEEEEEE----E
Confidence            455778999999999999999888 99999 44433211      111222222   599999999999999998    4


Q ss_pred             CCCccceEEEEEEeec
Q psy7941         222 PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p  237 (238)
                      | ..+..+.|.|..+|
T Consensus        83 g-~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           83 G-DQTTSATLTVTALP   97 (103)
T ss_dssp             S-SCBCCBCEEEECCC
T ss_pred             C-CcEEEEEEEEEecc
Confidence            4 33667778888877

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.21  E-value=3e-11  Score=86.19  Aligned_cols=82  Identities=17%  Similarity=0.315  Sum_probs=61.4

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++..+..+..       ..........|.|.++..+|.|.|+|.|.|..|. .++
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~   82 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-------KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEK   82 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-------EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc-------eEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-Eee
Confidence            34558999999999999999999999843222110       0111112346999999999999999999999884 478


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      .+.|.|..+|
T Consensus        83 ~~~l~V~~~p   92 (202)
T 1vca_A           83 GIQVEIYSFP   92 (202)
T ss_dssp             EEEEEEEBCC
T ss_pred             EEEEEEEeCC
Confidence            8899998765

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.21  E-value=6.8e-11  Score=75.88  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=61.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeee-
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEH-   82 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~-   82 (238)
                      .+.+...|..+.+.+|++++|.|.+...                          +.+.+.|++....    .+...... 
T Consensus         4 ~~~v~q~p~~~~~~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~   57 (111)
T 1i3g_L            4 DIVLTQSHKFMSTSVGDRVSITCKASQD--------------------------VGTAVAWYQQKPGQSPKLLIYWASTR   57 (111)
T ss_dssp             CCCEEESCSEEECCTTCCEEEEEEESSC--------------------------CTTCEEEEEECTTSCCEEEEETTTEE
T ss_pred             cceEEEeCCEEEEcCCCCEEEEEEeCCC--------------------------CCCCEEEEEECCCCCCEEEEEECCcc
Confidence            4556777888999999999999998642                          1346999996521    11111100 


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .....+|+.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus        58 ~~~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           58 HTGVPDRFTGSG-SGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             CTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCCCCCcEEEEc-CCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            011246787764 346679999999999999999999654

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1e-10  Score=74.77  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             CcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCC----CCCcceEEEee---ceEEEEEeecCC
Q psy7941         137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNP----PSSQKVFSVES---EVLSLTKVTRSE  209 (238)
Q Consensus       137 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~----~~~~~~~~~~~---~~l~i~~~~~~d  209 (238)
                      |.+.+.....+..+.+|+.+.|.|.+.+  .|.+.|++ ++..+......    +.........+   ..|.|.++..+|
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~k-nG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D   83 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD   83 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEE-SSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTT
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEE-CCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHH
Confidence            3333334456788999999999999987  77899999 55555332100    00002222222   279999999999


Q ss_pred             CeEEEEEeeeCCCCCccceEEEEEEeecC
Q psy7941         210 MGAYQCIAANGVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       210 ~G~y~C~~~n~~g~~~~~~~~l~V~~~p~  238 (238)
                      +|.|+|...+    ....+..|.|..+|.
T Consensus        84 ~G~Y~~~~~~----~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           84 SGALVGFSCP----GVQDSAALTIQESSG  108 (112)
T ss_dssp             CSEEEEEEET----TEEEEEEEEEECSSC
T ss_pred             CccEEEEEEC----CeeEEEEEEEeCCCc
Confidence            9999875543    235678899998874

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=99.21  E-value=2.3e-10  Score=72.60  Aligned_cols=85  Identities=14%  Similarity=0.225  Sum_probs=56.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee---eeee-eeeEeecCcc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA---VLAI-HEHVITNNAR   89 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~-~~~~~~~~~~   89 (238)
                      .|..+.+.+|++++|+|.++....                         ...+.|++.....   .... ........+|
T Consensus         3 ~p~~v~~~~G~svtl~C~~s~~~~-------------------------~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R   57 (106)
T 2frg_P            3 LPEVLQAPVGSSILVQCHYRLQDV-------------------------KAQKVWCRFLPEGCQPLVSSAVDRRAPAGRR   57 (106)
T ss_dssp             SCEEEEECTTCCEEEEEECCGGGT-------------------------TSEEEEEEEETTEEEEEEECCBTCEEEETTT
T ss_pred             CCcEEEEecCCcEEEEeEecCCcc-------------------------cCcEEEEECCCCCCcEEEEeCCcEeeecCCC
Confidence            456778899999999999863211                         1237899864221   1111 1111223568


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      |.+.....+.++|+|.+++.+|+|.|.|.+....
T Consensus        58 ~s~~~~~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~   91 (106)
T 2frg_P           58 TFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGAR   91 (106)
T ss_dssp             EEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEEccCCHHHCEEEEEEeecCC
Confidence            8875445567899999999999999999986543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=3.7e-11  Score=76.45  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=56.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.|.+ +.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.|.|...
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   87 (106)
T 2dlt_A           15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYK-NGVEVRPSK-----RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL   87 (106)
T ss_dssp             CCCEEEESSCCEECCCEESCSSCE-EEEEE-SSCBCCCCS-----SCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCC
T ss_pred             CCCeEEeCCCeEEEEEEEcCCCcc-eEEEc-CCEECcCCC-----CEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCc
Confidence            455778999999999999998877 99999 444332211     1111111  23799999999999999999999833


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                         +.++.|.|.
T Consensus        88 ---~~~~~l~V~   96 (106)
T 2dlt_A           88 ---SLSAKLNFL   96 (106)
T ss_dssp             ---CCCBCEEEE
T ss_pred             ---eEEEEEEEE
Confidence               344444554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.21  E-value=2e-10  Score=76.12  Aligned_cols=99  Identities=17%  Similarity=0.319  Sum_probs=65.6

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      ..+...+..+.+.+|+++.|.|.+...                            +.+.||++......   .......+
T Consensus        18 ~~v~q~p~~~~v~~G~~v~L~C~~~~~----------------------------~~v~W~r~~~g~~~---~~l~~~~~   66 (133)
T 3khq_A           18 SQIWQHPRFAAKKRSSMVKFHCYTNHS----------------------------GALTWFRKRGSQQP---QELVSEEG   66 (133)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESSS----------------------------SCEEEEEECTTSCC---EECCCTTT
T ss_pred             CceEEcCceEEEeCCCeEEEEEEeCCC----------------------------CEEEEEEeCCCCCC---EEEEEeCC
Confidence            356777889999999999999999642                            35999997321100   00112456


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-----cceeeEEEEEcCCcc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-----TKQMAFLEVVIPPDI  139 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~~~~~  139 (238)
                      ||.+... ...++|.|.+++.+|+|.|+|.+.+...     ....+.|.|...|.+
T Consensus        67 r~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           67 RIVQTQN-GSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             TEEEEEE-TTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-----
T ss_pred             CEEEEcC-CCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence            7877653 3567999999999999999999976531     233456777654433

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.20  E-value=3.8e-11  Score=76.70  Aligned_cols=86  Identities=19%  Similarity=0.325  Sum_probs=58.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~   84 (238)
                      .+..+|..+.+.+|++++|.|.+...                          +.+.+.|++....    .+.... ....
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~--------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~   56 (108)
T 1qfw_M            3 ELTQSPKSMSMSVGERVTLSCKASET--------------------------VDSFVSWYQQKPEQSPKLLIFGASNRFS   56 (108)
T ss_dssp             CEEEECSCEECCTTCCEEEEEEESSC--------------------------CCSCEEEEEECTTSCCEEEECSSSCBCT
T ss_pred             cEEEeCCeEEEcCCCCEEEEeeeCCC--------------------------CCcEEEEEEECCCCCCEEEEEEcCccCC
Confidence            35567788899999999999998642                          2346999996421    111110 0000


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        57 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           57 GVPDRFTGSG-SATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             TCCTTEECCB-CSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CCCCcEEEEc-CCCEEEEEECCCChhhCEEEEEEEccC
Confidence            1245776643 345679999999999999999999654

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.20  E-value=2.4e-10  Score=73.52  Aligned_cols=84  Identities=21%  Similarity=0.442  Sum_probs=58.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeeeeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHEHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~~~~~~   86 (238)
                      +...+..+.+.+|+++.|.|.+...                           .+.+.|+|+..  ..  +...... ...
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~---------------------------~~~v~W~r~~~~~~~~~l~~~~~~-~~~   55 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTT---------------------------MRSVQWFRQNSRGSLISLFYLASG-TKE   55 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC---------------------------CSEEEEEEECTTSCEEEEEEESSS-EEE
T ss_pred             eEECCCEEEEecCCcEEEEEEECCC---------------------------CceEEEEEECCCCCeEEEEEECCC-Ccc
Confidence            4567888999999999999998631                           13599998642  11  1111100 123


Q ss_pred             CccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 NARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .+|+.+...  ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        56 ~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (113)
T 1h5b_A           56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             ETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            456766543  346789999999999999999999764

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.8e-10  Score=71.91  Aligned_cols=80  Identities=23%  Similarity=0.410  Sum_probs=58.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....+.+|+.+.|.|. .+.|.+.+.|+++ +..+...      ........+   .|.|.++..+|+|.|+|.    .
T Consensus        15 ~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~-~~~l~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~   82 (103)
T 2dku_A           15 LTNLQVEEKGTAVFTCK-TEHPAATVTWRKG-LLELRAS------GKHQPSQEGLTLRLTISALEKADSDTYTCD----I   82 (103)
T ss_dssp             CCCEEEETTSEEEEEEE-CSSCCSCCEEEES-SCBCCSS------SSEEEEEETTEEEEEEESCCTTTCSEEEEE----C
T ss_pred             CCcEEEeCCCcEEEEEE-eCCCCCeEEEEeC-CEECCCC------CeEEEEeCCCEEEEEECCCCcccCEEEEEE----e
Confidence            45678899999999999 4888899999994 4433211      112222233   799999999999999998    5


Q ss_pred             CCCccceEEEEEEeec
Q psy7941         222 PPTVSKRLMLHVHCTY  237 (238)
Q Consensus       222 g~~~~~~~~l~V~~~p  237 (238)
                      | ..+..+.|.|..+|
T Consensus        83 g-~~~~~~~l~V~~~p   97 (103)
T 2dku_A           83 G-QAQSRAQLLVQGRR   97 (103)
T ss_dssp             S-SCBCCEEEEEECSC
T ss_pred             C-CceEEEEEEEeCcc
Confidence            5 33667888888765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.20  E-value=9.2e-11  Score=73.01  Aligned_cols=78  Identities=21%  Similarity=0.357  Sum_probs=55.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+ +.|.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.+    |
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k-~~~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g   83 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQR-GGSDISASN-----KYGLATEGTRHTLTVREVGPADQGSYAVIA----G   83 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSSSCCCEEEC-SSSEECSST-----TCEEEEETTEEEEEESSCCTTCCSEEEEEE----T
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEE-CCEECCCCC-----cEEEEEcCCEEEEEEcCCCcccCEEEEEEE----C
Confidence            456778999999999999 78888999999 444442211     1111111  236999999999999999999    4


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                       ..+.++.|.|.
T Consensus        84 -~~~~~~~l~V~   94 (95)
T 2k1m_A           84 -SSKVKFDLKVI   94 (95)
T ss_dssp             -TEEEEEEEEEE
T ss_pred             -CceEEEEEEEe
Confidence             33556777765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.19  E-value=1.9e-10  Score=81.24  Aligned_cols=86  Identities=30%  Similarity=0.492  Sum_probs=64.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....     .......  ...|.|.++..+|+|.|+|.+.|..|
T Consensus        14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   87 (197)
T 3lcy_A           14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSR-----KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG   87 (197)
T ss_dssp             CCCEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCCS-----SEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred             CCceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCCc-----cEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence            345678899999999999999999999999 554442211     1111111  22799999999999999999999988


Q ss_pred             CCccceEEEEEEeec
Q psy7941         223 PTVSKRLMLHVHCTY  237 (238)
Q Consensus       223 ~~~~~~~~l~V~~~p  237 (238)
                      . ....+.|.|..+|
T Consensus        88 ~-~~~~~~l~v~~~p  101 (197)
T 3lcy_A           88 E-VETSSKLLLQATP  101 (197)
T ss_dssp             E-EEEEEEEEEEEEE
T ss_pred             c-eeEEEEEEEEcCC
Confidence            4 4677788887765

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=99.18  E-value=5.8e-10  Score=79.14  Aligned_cols=125  Identities=19%  Similarity=0.346  Sum_probs=76.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeeeeEee
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHEHVIT   85 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~~~~~   85 (238)
                      .+.+.+..+.+.+|+++.|.|.+...                           ...+.||++..  .  .+....... .
T Consensus         5 ~V~Q~p~~v~v~~G~svtL~C~~s~~---------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~-~   56 (205)
T 3qjh_A            5 QVEQSPSALSLHEGTGSALRCNFTTT---------------------------MRAVQWFRKNSRGSLINLFYLASGT-K   56 (205)
T ss_dssp             CBEEECSEEEEETTCCEEEEEECSSC---------------------------EEEEEEEEEC-CCCEEEEEEESSEE-E
T ss_pred             eEEEeCCEEEEeCCCCEEEEEEEECC---------------------------cceEEEEEECCCCCcEEEEEECCCC-c
Confidence            35567888999999999999998643                           12489999642  1  111111111 2


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC--C--cceeeEEEEEcC---CcccccccCCceeecCCCcEE
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP--M--TKQMAFLEVVIP---PDISSEETSGDMMVPEGGSAK  157 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~--~~~~~~l~v~~~---~~~~~~~~~~~~~~~~g~~~~  157 (238)
                      ..+||.... .....++|+|.+++.+|+|.|+|.+....  .  -...+.|.|...   +.+.+..    . ......+.
T Consensus        57 ~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Cav~~~~~~~~~fG~GT~L~V~~~~~~~~p~V~~----l-~~~~~~~t  131 (205)
T 3qjh_A           57 ENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAVYQ----L-RDSKSSDK  131 (205)
T ss_dssp             EETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTTCCEEEBCCEEEEEECCCSSCCCEEEE----E-EBCC--CC
T ss_pred             cCCCEEEEEcCCCCEEEEEEeccccccCeEEEEEEEcCCCCccccCCCEEEEEeCcccCCCCEEEE----e-cccCCCcE
Confidence            356787764 44578899999999999999999986321  1  112345777632   1111110    0 11122478


Q ss_pred             EEEEEccccC
Q psy7941         158 LVCKAKGYPT  167 (238)
Q Consensus       158 l~C~~~~~p~  167 (238)
                      |.|.+.+..+
T Consensus       132 l~Cl~~~f~P  141 (205)
T 3qjh_A          132 SVCLFTDFDS  141 (205)
T ss_dssp             EEEEEESCCT
T ss_pred             EEEEEEcccc
Confidence            9999988543

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.18  E-value=2.3e-10  Score=73.36  Aligned_cols=85  Identities=21%  Similarity=0.379  Sum_probs=59.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+...|..+.+.+|++++|.|.+....                        .+.+.+.|+++......   ...+...+|
T Consensus         2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~~~~~---~~~~~~~~r   54 (111)
T 2ywz_A            2 WVDQTPRTITKETGESLTIKCVLKDHS------------------------CGLSSTTWYRTQLGSTN---EKTISIGGR   54 (111)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCS------------------------SCCCEEEEEEEETTCCC---CEECCSBTT
T ss_pred             eeEECCCcEEEccCCCEEEEeEECCCC------------------------CCCCEEEEEEeCCCCCc---eEeeEeCCC
Confidence            355678889999999999999996421                        12456999996321100   011223467


Q ss_pred             EEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          90 LSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        90 ~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      +.... .....++|.|.+++.+|+|.|+|.+.+
T Consensus        55 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           55 YDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            76543 334677999999999999999999976

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.18  E-value=2.5e-10  Score=74.63  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----e-eeee-eeeEe--
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----A-VLAI-HEHVI--   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~-~~~~-~~~~~--   84 (238)
                      ..+..+.+.+|+++.|.|.+.....                      +.+.+.+.|++.+..    . .... .....  
T Consensus         4 ~~~~~v~~~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~   61 (124)
T 1neu_A            4 YTDREVYGAVGSQVTLHCSFWSSEW----------------------VSDDISFTWRYQPEGGRDAISIFHYAKGQPYID   61 (124)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSC----------------------CCSCCEEEEEEEETTCCCCEEEEEEETTEEEEC
T ss_pred             ecCCeEEEEeCCeEEEEeEEeCCCC----------------------CCCceEEEEEEcCCCCCceEEEEEecCCeeccc
Confidence            4566788999999999999864210                      112456999986431    1 1111 11111  


Q ss_pred             ---ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEEcCC
Q psy7941          85 ---TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVVIPP  137 (238)
Q Consensus        85 ---~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~~~~  137 (238)
                         ...+|+.+... ....++|.|.+++.+|+|.|+|.+.+....   ...+.|.|..+|
T Consensus        62 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             SSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             cCccccCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence               11456665432 234568999999999999999999765332   345566666543

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=99.18  E-value=1.2e-09  Score=72.45  Aligned_cols=101  Identities=22%  Similarity=0.390  Sum_probs=66.7

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee--eE
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE--HV   83 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~--~~   83 (238)
                      .+...+..+.+.+|++++|.|.+.....                         ...+.||++...    .+.....  ..
T Consensus        11 ~v~Q~p~~v~v~~G~~vtL~C~~~~~~~-------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~~~   65 (134)
T 3bik_B           11 SLTFYPAWLTVSEGANATFTCSLSNWSE-------------------------DLMLNWNRLSPSNQTEKQAAFSNGLSQ   65 (134)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCT-------------------------TCEEEEEEECTTCCEEEEEEEETTEEE
T ss_pred             cEEECCCeEEEeCCCCEEEEEEeCCCCC-------------------------CcEEEEEEcCCCCCceEEEEEcCCCCC
Confidence            4556788899999999999999864211                         235999996321    1111111  11


Q ss_pred             eecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCCCc-----ceeeEEEEEc
Q psy7941          84 ITNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNPMT-----KQMAFLEVVI  135 (238)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~l~v~~  135 (238)
                      ....+||.+.. .....++|.|.+++.+|+|.|.|.+......     ...+.|.|..
T Consensus        66 ~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~  123 (134)
T 3bik_B           66 PVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTE  123 (134)
T ss_dssp             ESSCTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEEC
T ss_pred             cccCCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeC
Confidence            22367888764 3456789999999999999999998654321     1234566654

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.18  E-value=2.6e-10  Score=74.62  Aligned_cols=85  Identities=22%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+.++|..+.+.+|++++|.|.++...                        .+.+.+.||++......   ...+...+|
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~------------------------~~~~~v~Wyrq~~g~~~---~~li~~~~R   54 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRDAS------------------------FELKDTGWYRTKLGSTN---EQSISIGGR   54 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCS------------------------SCCCEEEEEEEETTCCC---CEECCCBTT
T ss_pred             ceEECCceEEEeCCCCEEEEEEeecCc------------------------cCCceEEEEEeCCCCCc---eEEEEeCCc
Confidence            456788899999999999999997431                        12346999995321110   111223567


Q ss_pred             EEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          90 LSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        90 ~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      |..... ....++|+|.+++.+|+|.|+|.+.+
T Consensus        55 ~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   87 (126)
T 3moq_A           55 YVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (126)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECcCChHhCEEEEEEEEE
Confidence            776543 34678999999999999999999955

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.18  E-value=7.2e-11  Score=83.47  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=65.7

Q ss_pred             CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC------CCCCcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  217 (238)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++ ++..+.....      ..............|.|.++..+|.|.|+|.+
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   87 (195)
T 2c5d_C            9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV   87 (195)
T ss_dssp             CCCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEE
T ss_pred             hhheEEecCCcEEEecccccCCCCcEEEEEE-CCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEE
Confidence            4567789999999999998 89999999999 5544422100      00000000111457999999999999999999


Q ss_pred             eeCCCCCccceEEEEEEeec
Q psy7941         218 ANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       218 ~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|..|...+..+.|.|..+|
T Consensus        88 ~~~~~~~~~~~~~l~V~~~p  107 (195)
T 2c5d_C           88 FLGHQTFVSQPGYVGLEGLP  107 (195)
T ss_dssp             EETTEEEECCCEEEEECCSC
T ss_pred             EeCCCceecccEEEEEecCC
Confidence            99887655666888887766

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.17  E-value=1.8e-10  Score=74.48  Aligned_cols=102  Identities=18%  Similarity=0.291  Sum_probs=60.6

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeee--e--eeEeecCc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAI--H--EHVITNNA   88 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~--~--~~~~~~~~   88 (238)
                      .+..+.+.+|+++.|.|.+.......                      . ...+.|++++.......  .  ........
T Consensus         6 ~p~~v~~~~G~~v~L~C~~~~~~~~~----------------------~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~   63 (118)
T 3udw_C            6 APTQVPGFLGDSVTLPCYLQVPNMEV----------------------THVSQLTWARHGESGSMAVFHQTQGPSYSESK   63 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTCC----------------------CEEEEEEEEETTCSBCSEEEETTTEEEETTCS
T ss_pred             CCCeEEEeeCCcEEEEEEeECCCCCC----------------------CceEEEEEEEcCCCceEEEEeCCCCCccCCcC
Confidence            34458899999999999995321110                      0 11489999743221111  0  11111244


Q ss_pred             cEEEEEcCC----CeEEEEEcccCcccCeEEEEEEec-C-CCcceeeEEEEEcCC
Q psy7941          89 RLSVTHNDA----NTWTLNIRSVRREDRGYYMCQVNT-N-PMTKQMAFLEVVIPP  137 (238)
Q Consensus        89 ~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~-~-~~~~~~~~l~v~~~~  137 (238)
                      |+.+.....    +.++|.|.+++.+|+|.|+|.+.+ . +.....+.|.|.++|
T Consensus        64 r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             SEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             cEEEecccccCCCCCcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            555433211    266999999999999999999976 3 233445667776654

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.17  E-value=1.2e-11  Score=80.95  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCce-EEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMK-VAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.|.. +..+.+.+|+++.|.|.+.                          +.|.|. +.|++++..+....      
T Consensus        13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~--------------------------g~P~p~~i~W~~~~~~l~~~~------   59 (122)
T 2cry_A           13 GPPIISS-TQTQHALHGEKGQIKCFIR--------------------------STPPPDRIAWSWKENVLESGT------   59 (122)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEEC--------------------------CSSCCSEEEEESSSCEECSEE------
T ss_pred             cCCCccC-CCeEEEecCCCEEEEEEEe--------------------------ecCCCcEeEEEECCEEccCCC------
Confidence            4677777 7888899999999999995                          345665 99999876543211      


Q ss_pred             cCccEEEE--EcCC-CeEEEEEcccCcccC-eEEEEEEecCCC
Q psy7941          86 NNARLSVT--HNDA-NTWTLNIRSVRREDR-GYYMCQVNTNPM  124 (238)
Q Consensus        86 ~~~~~~~~--~~~~-~~~~L~i~~~~~~d~-G~Y~C~~~~~~~  124 (238)
                       ..++.+.  .... ...+|.|.+++.+|. |.|+|.+.|...
T Consensus        60 -~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G  101 (122)
T 2cry_A           60 -SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG  101 (122)
T ss_dssp             -ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             -CCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCC
Confidence             2344432  1111 144899999999999 999999988643

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=99.17  E-value=7.1e-10  Score=72.53  Aligned_cols=100  Identities=13%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee-eEeecC
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE-HVITNN   87 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~-~~~~~~   87 (238)
                      ..+..+.+.+|++++|.|.+.....                         ...+.|++....    .+..... ......
T Consensus         7 ~~p~~v~~~~G~svtL~C~~s~~~~-------------------------~~~~~W~rq~~~~~~~~li~~~~~~~~~~~   61 (124)
T 2nms_A            7 TGPTTVNGLERGSLTVQCVYRSGWE-------------------------TYLKWWCRGAIWRDCKILVKTSGSEQEVKR   61 (124)
T ss_dssp             ECCSEEEEETTCCEEEEEEECTTCT-------------------------TSEEEEEESSSSTTCEEEEECCSSSCCEEE
T ss_pred             ecccEEEEeCCCCEEEEeEEeCCcc-------------------------cccEEEEeCCCCCCceEEEEcCCcccceeC
Confidence            3467788999999999999864211                         124899997531    1111110 011134


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                      +|+.+... ....++|+|.+++.+|+|.|+|.+..... ....+.|.|..+|
T Consensus        62 ~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~  113 (124)
T 2nms_A           62 DRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAP  113 (124)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCC
Confidence            67877654 35788999999999999999999965432 2223445555443

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=99.16  E-value=3.4e-10  Score=73.89  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=59.6

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeE
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHV   83 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~   83 (238)
                      |.+.+ |..+.+.+|++++|.|.+....-                        ....+.||+...  .  .+.... ...
T Consensus         2 p~v~Q-p~~v~v~~G~~vtL~C~~s~~~~------------------------~~~~v~Wyrq~~g~~~~~li~~~~~~~   56 (123)
T 3t0v_A            2 PVLTQ-SPSVSGTPGQKVTIFCSGSSSNV------------------------EDNSVYWYQQFPGTTPKVLIYNDDRRS   56 (123)
T ss_dssp             CSBEE-CCCEEECTTCCEEEEEECCTTTT------------------------TTSCEEEEEECTTSCCEEEEETTTEEC
T ss_pred             CccCc-cCeEEEcCCCCEEEEEecCCCcc------------------------CCCeEEEEEECCCCCCEEEEEECCcCC
Confidence            56666 56889999999999999864210                        124599999532  1  111111 111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ....+||.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        57 ~~~~~Rfs~~~-~~~~~sL~I~~l~~~DsG~Y~C~~~~~   94 (123)
T 3t0v_A           57 SGVPDRFSGSK-SGTSASLAISGLRSEDEADYYCLSWDD   94 (123)
T ss_dssp             TTCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCcCCEEEEc-cCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            11246887765 456789999999999999999998654

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=5.4e-11  Score=75.08  Aligned_cols=81  Identities=22%  Similarity=0.404  Sum_probs=59.4

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ..+.+.+|+.+.|.|.+. .|.+.+.|++ ++..+....     .......+  ..|.|.++..+|+|.|+|.+.|    
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYK-DGKKLSSSS-----KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEE-TTEECCCCS-----SEEEEEETTEEEEEETTCCTTTCSCEEEEETT----
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEE-CCEECCCCC-----CEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----
Confidence            345788999999999998 7889999999 554442211     11111122  4799999999999999999954    


Q ss_pred             CccceEEEEEEeecC
Q psy7941         224 TVSKRLMLHVHCTYL  238 (238)
Q Consensus       224 ~~~~~~~l~V~~~p~  238 (238)
                       ...++.|.|..||+
T Consensus        88 -~~~~~~l~V~~p~~  101 (102)
T 2eo1_A           88 -QQLSFRLQVAGQCF  101 (102)
T ss_dssp             -EECCEEEEEESCCC
T ss_pred             -CcEEEEEEEeCCCC
Confidence             24568889998885

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=99.16  E-value=4e-10  Score=72.86  Aligned_cols=86  Identities=14%  Similarity=0.274  Sum_probs=59.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee--eeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH--EHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~--~~~~   84 (238)
                      +...+..+.+.+|++++|.|.+....                         +.+.+.|++....    .+....  ....
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~-------------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~   57 (116)
T 1fo0_A            3 VTQTQTSISVMEKTTVTMDCVYETQD-------------------------SSYFLFWYKQTASGEIVFLIRQDSYKKEN   57 (116)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCC-------------------------SSCEEEEEEECTTCCEEEEEEEETTCCSC
T ss_pred             cCcCCCcEEEecCCcEEEEeEecCCC-------------------------CCeEEEEEEeCCCCCeEEEEEEccCCcCc
Confidence            45667889999999999999986431                         1335999996421    111111  0111


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...+||.+.. .....++|+|.+++.+|+|.|.|.+.+
T Consensus        58 ~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           58 ATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   95 (116)
T ss_dssp             CEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEc
Confidence            1246888763 445678999999999999999999975

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.16  E-value=1.3e-10  Score=74.52  Aligned_cols=90  Identities=17%  Similarity=0.219  Sum_probs=59.4

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeeee-eEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIHE-HVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~~-~~~   84 (238)
                      .+...|..+.+.+|++++|.|.+.....                      ....+.+.|+++..  ..  +..... ...
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~----------------------~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~   60 (111)
T 1j05_L            3 VLTQSPASLAVSLGQRATMSCRAGESVD----------------------IFGVGFLHWYQQKPGQPPKLLIYRASNLES   60 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCE----------------------ETTEECEEEEEECTTSCEEEEEETTTEECT
T ss_pred             cEEEeCCEEEEeCCCCEEEEeecCCCcc----------------------cCCCceEEEEEeCCCCCCEEEEEecCcCCC
Confidence            3556778889999999999999864320                      00124599999642  11  111100 001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+|+.+.. ....++|.|.+++.+|+|.|+|.+.+.
T Consensus        61 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           61 GIPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             TSCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCcEEEEc-cCCEEEEEECCCCcccCEEEEEEEecC
Confidence            1246787764 346679999999999999999999653

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.16  E-value=1.7e-10  Score=75.49  Aligned_cols=105  Identities=19%  Similarity=0.384  Sum_probs=65.0

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------ee-eeeee
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AV-LAIHE   81 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~-~~~~~   81 (238)
                      ..+..++..+.+.+|+++.|.|.+......                      ...+.+.|++.+..      .. .....
T Consensus         6 ~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~i~~~~~~   63 (126)
T 1eaj_A            6 LSITTPEEMIEKAKGETAYLPCKFTLSPED----------------------QGPLDIEWLISPADNQKVDQVIILYSGD   63 (126)
T ss_dssp             CEESSSEEEEEEETTSCEEECCBEECCTTC----------------------CSCEEEEEEEEETTSSCCSEEEEEEETT
T ss_pred             EEEECCCceEEEEeCCCEEEEEEEecCCCC----------------------CCceEEEEEEeCCCcCCCceEEEEEeCC
Confidence            345566778899999999999998643211                      11245999996421      11 11111


Q ss_pred             eEe-----ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          82 HVI-----TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        82 ~~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      ...     ...+|+.+...  ....++|.|.+++.+|+|.|+|.+.+... ....+.|.|..
T Consensus        64 ~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           64 KIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             EEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeccccCccccCeeEEEcccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            111     12345655442  23456899999999999999999977533 23445566543

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.8e-10  Score=75.81  Aligned_cols=106  Identities=18%  Similarity=0.318  Sum_probs=65.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      ...+..++..+.+.+|++++|.|.+....                         +.+.+.||++.+..........-...
T Consensus         8 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~i~~~~~~~~   62 (136)
T 2d9c_A            8 ELQVIQPEKSVSVAAGESATLRCAMTSLI-------------------------PVGPIMWFRGAGAGRELIYNQKEGHF   62 (136)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCC-------------------------SCCCCEEEETTTSSCEEEEESSSCCC
T ss_pred             CeEEEecCcEEEEcCCCCEEEEEEEcCCC-------------------------CCceEEEEeecCCCeEEEEEcCCCcc
Confidence            34566778899999999999999986421                         23469999976321110000000001


Q ss_pred             ccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecCCC---cc----eeeEEEEEcCCc
Q psy7941          88 ARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTNPM---TK----QMAFLEVVIPPD  138 (238)
Q Consensus        88 ~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~----~~~~l~v~~~~~  138 (238)
                      .|+....    .....++|.|.+++.+|+|.|+|.+.+...   ..    ..+.|.|..+|.
T Consensus        63 ~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s  124 (136)
T 2d9c_A           63 PRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS  124 (136)
T ss_dssp             SSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred             cceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence            2333211    112356999999999999999999865432   11    345677776553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=83.15  Aligned_cols=78  Identities=18%  Similarity=0.354  Sum_probs=57.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCC-CCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDS-SAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|...+ ...+.+|+++.|.|.+.+                          . |.|.++|+|++..+..         
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g--------------------------~~P~p~i~W~k~g~~l~~---------  160 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVAN--------------------------IKKETHIVWYKDEREISV---------  160 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEES--------------------------CCTTCEEEEEETTEEECC---------
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeC--------------------------CCCCCEEEEEECCEECCC---------
Confidence            57776655 478899999999999853                          3 5778999998776532         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      +.++.   ...+..+|.|.+++.+|+|.|+|.+.|..+
T Consensus       161 ~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  195 (207)
T 3rbs_A          161 DEKHD---FKDGICTLLITEFSKKDAGIYEVILKDDRG  195 (207)
T ss_dssp             CCCCC---CSSEEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             CCceE---cCCCEEEEEECCCCcccCEEEEEEEEcCCC
Confidence            11211   112234799999999999999999987643

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.16  E-value=1.8e-10  Score=74.27  Aligned_cols=92  Identities=18%  Similarity=0.279  Sum_probs=59.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-e---eeeeeee-eEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-K---AVLAIHE-HVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~---~~~~~~~-~~~   84 (238)
                      .+...|..+.+.+|++++|.|.+......                    .....+.+.||+... .   .+..... ...
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~--------------------~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~   62 (114)
T 1eeq_A            3 VLTQSPDSLAVSLGERATINCKSSQSVLD--------------------SSNSKNYLAWYQQKPGQPPKLLIYWASTRES   62 (114)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEE--------------------TTTTEECEEEEEECTTSCCEEEEETTTEECT
T ss_pred             ceEecCCeEEEcCCCeEEEEEEcCCCccc--------------------cccCCccEEEEEECCCCCCEEEEEecCccCC
Confidence            45567888999999999999998643210                    000024599999642 1   1111100 001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+|+.+.. ....++|.|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~~~r~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           63 GVPDRFSGSG-SGTDFTLTISSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCCEEEee-cCCEEEEEECCCCcccCEEEEEEEeeC
Confidence            1246787764 456779999999999999999999653

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=99.16  E-value=9.1e-10  Score=71.68  Aligned_cols=86  Identities=13%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeee---
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEH---   82 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~---   82 (238)
                      .+...|..+.+.+|++++|.|.... .                          ...+.||+....    .+......   
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~~~-~--------------------------~~~v~W~rq~~g~~~~~l~~~~~~~~~   55 (121)
T 2oi9_C            3 AVTQSPRNKVAVTGEKVTLSCNQTN-N--------------------------HNNMYWYRQDTGHELRLIYYSYGAGST   55 (121)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-C--------------------------CSEEEEEEESSSSCCEEEEEESSTTCC
T ss_pred             ceEeCCCeEEecCCCcEEEEEEecC-C--------------------------CCeEEEEEECCCCCcEEEEEECCCcee
Confidence            4567788899999999999999631 1                          235999986421    11111100   


Q ss_pred             -EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          83 -VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                       .....+||.+.......++|.|.+++.+|+|.|.|.+.+.
T Consensus        56 ~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           56 EKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGG   96 (121)
T ss_dssp             EECSSCTTEEEECCSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             eCCccCCCeEEEcCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence             0112568887764456789999999999999999998653

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.15  E-value=4.7e-10  Score=72.52  Aligned_cols=86  Identities=22%  Similarity=0.369  Sum_probs=59.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeEe-
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHVI-   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~~-   84 (238)
                      +...+..+.+.+|++++|.|.+....                         +.+.+.|++...  .  .+.... .... 
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~~~-------------------------~~~~v~W~r~~~~~~~~~l~~~~~~~~~~   57 (116)
T 1tvd_A            3 VTQSSPDQTVASGSEVVLLCTYDTVY-------------------------SNPDLFWYRIRPDYSFQFVFYGDDSRSEG   57 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCS-------------------------SSCCEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             eecCCCcEEEecCCeEEEEeEeEcCC-------------------------CCcEEEEEEeCCCCCcEEEEEECCccccc
Confidence            45678889999999999999986321                         134599998642  1  111111 1111 


Q ss_pred             --ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 --TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 --~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                        ...+|+.+... ....++|+|.+++.+|+|.|.|.+.+
T Consensus        58 ~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   97 (116)
T 1tvd_A           58 ADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             CGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CcccCCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeC
Confidence              12578887653 34677999999999999999999975

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=99.15  E-value=4.1e-10  Score=77.03  Aligned_cols=89  Identities=18%  Similarity=0.408  Sum_probs=62.9

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-----e--eeeeee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-----K--AVLAIH   80 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~--~~~~~~   80 (238)
                      .+.+...+..+.+.+|+++.|.|.+.+...                          ..+.||+...     .  .+....
T Consensus         9 s~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~--------------------------~~v~WyrQ~pg~~~~~p~~Li~~~   62 (166)
T 3dmm_C            9 APELRIFPKKMDAELGQKVDLVCEVLGSVS--------------------------QGCSWLFQNSSSKLPQPTFVVYMA   62 (166)
T ss_dssp             CCEEEEECSCBCCCTTCCEEEEEEEESSSC--------------------------CEEEEEEEETTCSCCSCEEEEEEE
T ss_pred             CccEEEeCCeEEEcCCCCEEEEEEEeCCCC--------------------------ceEEEEEECCCCCCCCcEEEEEEe
Confidence            456777888899999999999999963222                          2489998532     1  111111


Q ss_pred             ee---E---ee--cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          81 EH---V---IT--NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        81 ~~---~---~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..   .   ..  ..+||.+.......++|.|.+++.+|+|.|+|.+...
T Consensus        63 ~~~~~~~y~~~~~~~~Rfs~s~~~~~~~sL~I~~vq~eDsG~YyCa~~~~  112 (166)
T 3dmm_C           63 SSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN  112 (166)
T ss_dssp             SSSCCEEECGGGSSCCSEEEECSTTTEEEEEESSCCTTTCEEEEEEEESS
T ss_pred             CCCCceeeccccccccceEEEcCCCCEEEEEECCCChhhCEEEEEEECCC
Confidence            10   0   01  2578888876656689999999999999999998643

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.15  E-value=3e-10  Score=73.08  Aligned_cols=84  Identities=21%  Similarity=0.370  Sum_probs=58.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...|..+.+.+|++++|.|.+....                        .+.+.+.|+++......   ...+..++|+
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~------------------------~~~~~v~W~r~~~g~~~---~~~~~~~~r~   55 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDAS------------------------YALGSTCWYRKKSGEGN---EESISKGGRY   55 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCS------------------------SCCCCEEEEEEETTSCC---CEECCCBTTE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCc------------------------CCCCEEEEEEeCCCCCc---eEeEEeCCCE
Confidence            45678889999999999999996421                        01346999996421110   0112234677


Q ss_pred             EEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          91 SVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        91 ~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..... ....++|+|.+++.+|+|.|.|.+.+
T Consensus        56 ~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           56 VETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             EEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             EEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            66542 34678999999999999999999965

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.15  E-value=3e-10  Score=79.89  Aligned_cols=88  Identities=14%  Similarity=0.320  Sum_probs=65.2

Q ss_pred             CCceeecCCCcEEEEEEEcccc-CCeEEEEeCCCeeeEeecCCCCCcceEE----EeeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFS----VESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      +....+.+|+.+.|.|.+.+.| .+.+.|++.++..+....     .....    .....|.|.++..+|+|.|+|.+.|
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   83 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS-----SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCC-----CeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence            3456788999999999999876 789999994554443211     11111    2345899999999999999999999


Q ss_pred             CCCCCccceEEEEEEeec
Q psy7941         220 GVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       220 ~~g~~~~~~~~l~V~~~p  237 (238)
                      ..|...+..+.|.|..+|
T Consensus        84 ~~~~~~~~~~~l~v~~~p  101 (191)
T 1epf_A           84 EDGTQSEATVNVKIFQKL  101 (191)
T ss_dssp             TTTEEEEEEEEEEEECCS
T ss_pred             CCCcceEEEEEEEeecCc
Confidence            985455778888887655

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=99.15  E-value=3.8e-10  Score=72.36  Aligned_cols=84  Identities=21%  Similarity=0.394  Sum_probs=57.6

Q ss_pred             eccCceeEEEecCCEEEEeEEe-cCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee---eee-
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVN-NLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI---HEH-   82 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~---~~~-   82 (238)
                      +..+..+.+.+|++++|.|.+. ...                          .+.+.|++....    .+...   ... 
T Consensus         3 ~q~p~~~~~~~G~~v~L~C~~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~~   56 (111)
T 2qhl_A            3 IKELHVKTVKRGENVTMECSMSKVKD--------------------------KDKLAWYRQSFGKVPQYFVRYYSSNSGY   56 (111)
T ss_dssp             CCBCEEEECCTTCCEEECCBCTTCSC--------------------------GGGEEEEEECTTBCCEEEEEECSSSSCE
T ss_pred             cCCCceEEEeCCCCEEEEEEccCCcc--------------------------cceEEEEEecCCCCCEEEEEEeccCCcc
Confidence            3457778899999999999985 321                          345999996421    11111   001 


Q ss_pred             Ee--ec-CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          83 VI--TN-NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        83 ~~--~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..  .. .+||.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus        57 ~~~~~~~~~R~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           57 KFAEGFKDSRFSMTV-NDQKFDLNIIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             EECTTCCCTTEEEEE-SSSBEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccccCCCCCcEEEEE-cCCeEEEEECCCChhHCEEEEEEEccC
Confidence            01  01 56888765 356789999999999999999999653

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.15  E-value=3.2e-10  Score=72.34  Aligned_cols=85  Identities=24%  Similarity=0.363  Sum_probs=58.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .+...|..+.+.+|++++|.|.+.....                        +.+.+.||++......   ...+...+|
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~------------------------~~~~v~W~r~~~~~~~---~~~~~~~~r   54 (108)
T 2coq_A            2 RVDQTPRIATKETGESLTINCVLRDTAC------------------------ALDSTNWYRTKLGSTK---EQTISIGGR   54 (108)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECCSSE------------------------EEEEEEEEEEETTCCC---EEECCCBTT
T ss_pred             ceEeCCceEEEcCCCCEEEEeEeCCCcC------------------------CCCEEEEEEcCCCCCc---EEEEEeCCc
Confidence            3556788899999999999999864210                        1346999996421110   011223567


Q ss_pred             EEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          90 LSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        90 ~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      +.... .....++|.|.+++.+|+|.|.|.+.+
T Consensus        55 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           55 YSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            76543 234678999999999999999999865

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.15  E-value=7.6e-10  Score=79.43  Aligned_cols=102  Identities=19%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEee
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVIT   85 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~   85 (238)
                      .|.+. .++..+.+.+|+++.|.|.+....                        .+.+.+.|++++..+..... .....
T Consensus       104 ~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p------------------------~~~~~i~W~~~g~~~~~~~~~~~~~~  159 (213)
T 2x1w_L          104 IYDVVLSPSHGIELSVGEKLVLNCTARTEL------------------------NVGIDFNWEYPSSKHQHKKLVNRDLK  159 (213)
T ss_dssp             EEEEEEESCSCEEEETTCCEEEEEEEEECT------------------------TBCCEEEEECSCSSCCSEEEEEEEEC
T ss_pred             ccceEEcCCCCeEEcCCCCEEEEEEEECCC------------------------CCceEEEEEecCCccceEEEeccccc
Confidence            34444 344455899999999999997421                        12346999998765322111 00000


Q ss_pred             cCc--c-EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcc
Q psy7941          86 NNA--R-LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDI  139 (238)
Q Consensus        86 ~~~--~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~  139 (238)
                      ...  . ...      ..+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..+|.+
T Consensus       160 ~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          160 TQSGSEMKKF------LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             CCSSCSCEEE------EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             cccCccceee------eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            000  0 111      2289999999999999999998863 3455667777766543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.15  E-value=2.5e-10  Score=73.89  Aligned_cols=91  Identities=23%  Similarity=0.420  Sum_probs=61.7

Q ss_pred             CceeecCCCcEEEEEEEcc--ccCCeEEEEeCCCeeeEeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKG--YPTPKITWRREDNKEIIVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      ..+.+..|+++.|.|.+.+  .+...+.|++++ ..+.....       .....+.....+..|.|.+++.+|.|.|+|.
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~-~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~   89 (117)
T 3q0h_A           11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQD-QLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCI   89 (117)
T ss_dssp             CCEEEETTCCEEECEEEESCCCEEEEEEEEETT-EEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCCEEEEEEecCCCCCEEEEEEEeCC-EEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEE
Confidence            4467889999999999876  334479999953 32221100       0111223233356899999999999999999


Q ss_pred             eee-CCCCCccceEEEEEEeecC
Q psy7941         217 AAN-GVPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       217 ~~n-~~g~~~~~~~~l~V~~~p~  238 (238)
                      +.+ ..| .....+.|.|..||.
T Consensus        90 v~~~~~g-~~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           90 YHTYPDG-TYTGRIFLEVLESSV  111 (117)
T ss_dssp             EEEETTC-CEEEEEEEEEECC--
T ss_pred             EEECCCC-CeEEEEEEEEEccCc
Confidence            765 556 457888999998873

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.14  E-value=2.9e-10  Score=72.54  Aligned_cols=97  Identities=19%  Similarity=0.345  Sum_probs=60.3

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce------eeeeeee--eEeecC
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK------AVLAIHE--HVITNN   87 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~~~~~~--~~~~~~   87 (238)
                      +.+.+.+|+++.|.|.+......                       ....+.|++....      .......  ......
T Consensus         2 ~~v~~~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~   58 (109)
T 2oyp_A            2 DGYKVEVGKNAYLPCSYTLPTSG-----------------------TLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKS   58 (109)
T ss_dssp             EEEEECTTSCEEECCBCCCCTTC-----------------------CCCCEEEESSSCCSSSCSSEEEEECSSSEEEESC
T ss_pred             CCEEEEcCCCEEEEEEeECCCCC-----------------------CeEEEEEEecCCCCCCceeEEEEcCCcCcccccc
Confidence            45778999999999998642111                       1235899996532      1111111  111234


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI  135 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~  135 (238)
                      +|+.+... ..+.++|.|.+++.+|+|.|+|.+.+.. .....+.|.|.+
T Consensus        59 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~V~V  108 (109)
T 2oyp_A           59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI  108 (109)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             ceEEEccCccCCcEeEEEccCCChhCeEEEEEEEcCCcccceEEEEEEEe
Confidence            56655432 2345689999999999999999997653 334455566543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.14  E-value=7.4e-09  Score=87.74  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=105.5

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEE-EE--eCCceeeeeeeeeE
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA-WI--KADTKAVLAIHEHV   83 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-W~--~~~~~~~~~~~~~~   83 (238)
                      .+|.|. .+..+.+..|+++.|.|.+.                          +.|.+.+. |+  +++..+.. .....
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~--------------------------g~P~p~i~~W~~~~~g~~l~~-~~~~~  215 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAI--------------------------GRTVAGDRLWLQGIDVRDAPL-KEIKV  215 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEE--------------------------SCCCTTCEEEEEESSSCCEEE-EEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeC--------------------------CCCCCceeEEEecCCCccccc-cceEE
Confidence            456766 56678999999999999995                          34566687 88  44443321 11111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCCcccccccCCceeecCCCcEEEEEE
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPPDISSEETSGDMMVPEGGSAKLVCK  161 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~  161 (238)
                      +. ..+        ...+|.|.+++..|.|.|+|.+.|...  ....+.|.|..+|.+...   ..........+.|.|.
T Consensus       216 ~~-~~~--------~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~---p~~~~~~~~~v~l~w~  283 (731)
T 2v5y_A          216 TS-SRR--------FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAP---PQLASVGATYLWIQLN  283 (731)
T ss_dssp             CC-SSE--------EEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSC---CEEEEECSSCEEEECC
T ss_pred             ec-ccc--------ceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCC---cceeccCCceEEEEeC
Confidence            11 111        123999999999999999999988644  345567888877765432   1222334567888887


Q ss_pred             Eccc----cCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEee--eCCCCC
Q psy7941         162 AKGY----PTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAA--NGVPPT  224 (238)
Q Consensus       162 ~~~~----p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--n~~g~~  224 (238)
                      ....    |..  .+.|...++...          .........+.+..+...+...|+|.|.  |..|..
T Consensus       284 ~~~~~g~~~i~~Y~v~~~~~~~~~~----------~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s  344 (731)
T 2v5y_A          284 ANSINGDGPIVAREVEYCTASGSWN----------DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG  344 (731)
T ss_dssp             CSSBSSCSCCCEEEEEEEESSSSCE----------EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSC
T ss_pred             CcccCCCCccEEEEEEEEECCCCce----------EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccc
Confidence            5321    222  466665322111          1112233567888888888788888998  988854

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.14  E-value=1e-09  Score=77.15  Aligned_cols=94  Identities=21%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeC--CceeeeeeeeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKA--DTKAVLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~   85 (238)
                      +|.+...+....+.+|+++.|.|.+.                          +.|.+.+.|+++  +..+..      ..
T Consensus        92 ~p~~~~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~i~W~~~~~g~~~~~------~~  139 (190)
T 2wv3_A           92 APDITGHKRSENKNEGQDAMMYCKSV--------------------------GYPHPEWMWRKKENGVFEEI------SN  139 (190)
T ss_dssp             CCEEEEECSEEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEEEETTEEEEC------CC
T ss_pred             CCcccccCCcceeeCCCcEEEEEEeC--------------------------ccCCCceEEEEcCCCceeee------ec
Confidence            57777778888899999999999985                          345678999994  332211      11


Q ss_pred             cCccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ...++.+... ....+|.|.+++ .+|.|.|+|.+.|... ....+.|.|.
T Consensus       140 ~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          140 SSGRFFIINK-ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             TTSCEEEEEC-SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCCeEEEecC-CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            3445555442 233489999999 7999999999987643 3444555554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.14  E-value=9.4e-11  Score=83.59  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             eeecCCCcEEEEEE---EccccCCeEEEEeCCCeeeE---eecC-------CCCCcce---EEEeeceEEEEEeecCCCe
Q psy7941         148 MMVPEGGSAKLVCK---AKGYPTPKITWRREDNKEII---VRSN-------PPSSQKV---FSVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       148 ~~~~~g~~~~l~C~---~~~~p~~~~~W~~~~~~~~~---~~~~-------~~~~~~~---~~~~~~~l~i~~~~~~d~G  211 (238)
                      +.+..|+.+.|.|.   +.+.|.+.+.|++++.....   ....       .......   .......|.|.++..+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            56788999999996   45689999999995432110   0000       0000011   1122347999999999999


Q ss_pred             EEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|+|.|.|..|. .+..+.|.|..||
T Consensus        83 ~Y~C~a~n~~g~-~~~~~~l~V~~p~  107 (203)
T 4fa8_A           83 NYLCRMKLGETE-VTKQEHLSVVKPL  107 (203)
T ss_dssp             EEEEEEEETTEE-EEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCc-EEEEEEEEecCCc
Confidence            999999999984 4788889998776

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.14  E-value=3e-10  Score=81.40  Aligned_cols=88  Identities=30%  Similarity=0.523  Sum_probs=64.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEee--ceEEEEEeec-CCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVES--EVLSLTKVTR-SEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~-~d~G~y~C~~~n~~  221 (238)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+....   .........+  ..|.|.++.. +|.|.|+|.+.|..
T Consensus        13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~   88 (212)
T 2yd1_A           13 PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQ---SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV   88 (212)
T ss_dssp             CCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCTTS---TTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSS
T ss_pred             CCceEEecCCEEEEEEEEccCCCCeEEEEE-CCEECCCCc---ceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCC
Confidence            445678899999999999999999999999 554442110   0011111111  4799999999 99999999999999


Q ss_pred             CCCccceEEEEEEee
Q psy7941         222 PPTVSKRLMLHVHCT  236 (238)
Q Consensus       222 g~~~~~~~~l~V~~~  236 (238)
                      |...+..+.|.|..+
T Consensus        89 g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           89 GDAVSADATLTIYEG  103 (212)
T ss_dssp             SCEEEEEEEEEEECT
T ss_pred             CCeEEeeEEEEEecc
Confidence            854578888888754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.14  E-value=8.9e-11  Score=83.50  Aligned_cols=89  Identities=16%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             ceeecCCCcEEEEEEEccccC-----CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPT-----PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~-----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+.+.+|+.+.|.|.+.+.|.     +.+.|++.++......................|.|.++..+|+|.|+|.+.|..
T Consensus        11 ~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   90 (202)
T 3bp6_B           11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA   90 (202)
T ss_dssp             EEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCC
Confidence            466889999999999998876     799999943332211110000000000123579999999999999999999998


Q ss_pred             CCCccceEEEEEEee
Q psy7941         222 PPTVSKRLMLHVHCT  236 (238)
Q Consensus       222 g~~~~~~~~l~V~~~  236 (238)
                      |.. +..+.|.|..+
T Consensus        91 ~~~-~~~~~l~V~~~  104 (202)
T 3bp6_B           91 AWD-YKYLTVKVKAS  104 (202)
T ss_dssp             EEE-EEEEEEEEEBC
T ss_pred             Ccc-eEEEEEEecCC
Confidence            844 77888888764

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.14  E-value=1.8e-10  Score=74.41  Aligned_cols=97  Identities=15%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc------eeeeeeee--eEee
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT------KAVLAIHE--HVIT   85 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~------~~~~~~~~--~~~~   85 (238)
                      .+..+.+.+|++++|.|.+.....                        ....+.|++...      ........  ....
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~------------------------~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~   58 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLG------------------------GIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQ   58 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHH------------------------CSCCEEEEESCHHHHTTTTEEEEECSSSEEEE
T ss_pred             CccEEEEEcCCCEEEEEEeecCCC------------------------CCEEEEEECCCCCcCCCceEEEEeCCeEcccc
Confidence            466788999999999999863200                        023599999751      22221111  1122


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEEc
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVVI  135 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~  135 (238)
                      ..+|+.+... ..+.++|+|.+++.+|+|.|+|.+....... .+.+.+.+
T Consensus        59 ~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~v~L~V  108 (115)
T 2or7_A           59 RNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFH-FVDYMLEV  108 (115)
T ss_dssp             SSTTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCTTSCE-EEEEEEEE
T ss_pred             cCccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECCCcee-EEEEEEEE
Confidence            4567765432 2356799999999999999999997643322 44444443

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.14  E-value=3.5e-10  Score=72.79  Aligned_cols=91  Identities=19%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~   84 (238)
                      .+...|..+.+.+|++++|.|.+......                     ....+.+.||+....    .+.... ....
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~---------------------~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~   61 (113)
T 1dlf_L            3 VMTQTPLSLPVSLGNQASISCRSSQSLVH---------------------SNGNTYLHWYLQKPGQSPKLLIYKVSNRFS   61 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             cEEEeCCEEEEcCCCCEEEEEEccccccc---------------------cCCCceEEEEEECCCCCCeEEEEecCccCC
Confidence            45567788999999999999998643210                     001246999986421    111110 0001


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...+||.... ....++|.|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~~~R~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           62 GVPDRFSGSG-SGTDFTLKISRVEAEDLGVYFCSQSTH   98 (113)
T ss_dssp             TCCTTEEEEE-ETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CCCCCEEEEc-cCCEEEEEECCCChHHCEEEEEEEecC
Confidence            1246787765 346779999999999999999999653

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=81.65  Aligned_cols=88  Identities=17%  Similarity=0.392  Sum_probs=62.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC-
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP-  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~-  223 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++ ..+...    .........++.|.|.++..+|.|.|+|.+.|..+. 
T Consensus         9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   83 (189)
T 2v5t_A            9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN-EEVTTI----SDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE   83 (189)
T ss_dssp             CSSEEEETTSCEEECCEEECSSCCEEEEEC------CBC----CCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTE
T ss_pred             CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECC-ccceec----cCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCc
Confidence            44567889999999999999999999999944 333211    112223334567999999999999999999998752 


Q ss_pred             CccceEEEEEEeec
Q psy7941         224 TVSKRLMLHVHCTY  237 (238)
Q Consensus       224 ~~~~~~~l~V~~~p  237 (238)
                      .....+.+.|..+|
T Consensus        84 ~~~~~~~l~v~~~p   97 (189)
T 2v5t_A           84 IDFRDIIVIVNVPP   97 (189)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             eEEEEEEEEecCCC
Confidence            33456677777665

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=99.13  E-value=4.3e-10  Score=74.46  Aligned_cols=93  Identities=22%  Similarity=0.328  Sum_probs=58.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee----eeeeee----E
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV----LAIHEH----V   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~----~~~~~~----~   83 (238)
                      ...+..+.+.+|+++.|.|.+.......                   .+...+.+.|++......    ......    .
T Consensus        10 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~-------------------~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~   70 (132)
T 1nko_A           10 LTMQSSVTVQEGMCVHVRCSFSYPVDSD-------------------TDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQ   70 (132)
T ss_dssp             EEECSEEEEETTCCEEECEEEECCCCTT-------------------TTTSCCEEEEEEC-----CCSCSEESCTTCCCC
T ss_pred             EeCCCEEEEcCCCeEEEEccccCCCccc-------------------cCCCccEEEEEECCCCCCcccEEEeCCCccccc
Confidence            4567889999999999999996321000                   011245699999754211    111100    0


Q ss_pred             eecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          84 ITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ....+|+.+... ....++|.|.+++.+|+|.|.|.+.+..
T Consensus        71 ~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  111 (132)
T 1nko_A           71 EETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN  111 (132)
T ss_dssp             GGGTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccCccEEEeCCCCCCceEEEEcccCcccCeeEEEEEEcCC
Confidence            112467777543 2456799999999999999999997643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.13  E-value=6.1e-10  Score=79.81  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.+...+....+..|+++.|.|.+.                          +.|.+.+.|++++..+....      ..
T Consensus       108 ~p~~~~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~v~W~~~g~~l~~~~------~~  155 (212)
T 2yd6_A          108 FPTIDMGPQLKVVERTRTATMLCAAS--------------------------GNPDPEITWFKDFLPVDTSN------NN  155 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEEC------------
T ss_pred             cceeecCCcceeEecCCCEEEEEEec--------------------------CCCCCeEEEEECCccccCcC------CC
Confidence            36777777888899999999999985                          34567899999876543221      12


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCCc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPPD  138 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~~  138 (238)
                      .++..... .....|.|.+++.+|+|.|+|.+.|..+.  +..+.|.|..++.
T Consensus       156 ~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          156 GRIKQLRS-ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             CCEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             ceEEEEec-CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            23333222 22349999999999999999999886432  3456677776554

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.13  E-value=2.7e-10  Score=74.12  Aligned_cols=88  Identities=18%  Similarity=0.396  Sum_probs=57.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee--eeeeeeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA--VLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~   85 (238)
                      ...+..++..+.+.+|++++|.|.+...                         .+.+.+.|||+++..  .......  .
T Consensus         7 ~~~v~q~p~~~~~~~G~~v~L~C~~~~~-------------------------~~~~~v~W~r~~~~~~~~i~~~~~--~   59 (120)
T 2yz1_A            7 ELKVTQPEKSVSVAAGDSTVLNCTLTSL-------------------------LPVGPIKWYRGVGQSRLLIYSFTG--E   59 (120)
T ss_dssp             CCCEECCSSEEEECTTCCEEECCEESCC-------------------------CSCCCEEEEESSSTTCEEEEEECE--E
T ss_pred             cEEEECCCceEEEeCCCCEEEEeEECCC-------------------------CCCcEEEEEcCCCCCcEEEEEcCC--c
Confidence            4556677889999999999999998632                         123469999975321  1111110  0


Q ss_pred             cCccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 NNARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...|+....    .....++|.|.+++.+|+|.|+|.+.+.
T Consensus        60 ~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           60 HFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQK  100 (120)
T ss_dssp             CTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             ccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            112333221    1234568999999999999999998654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.13  E-value=2e-10  Score=82.08  Aligned_cols=96  Identities=22%  Similarity=0.375  Sum_probs=64.5

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...+....+..|+++.|.|.+.                         .+.|.+.+.|++++..+..        .
T Consensus       110 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-------------------------~~~p~~~v~W~~~~~~l~~--------~  156 (212)
T 2v9r_A          110 LRDDFRQNPSDVMVAVGEPAVMECQPP-------------------------RGHPEPTISWKKDGSPLDD--------K  156 (212)
T ss_dssp             ECSSCSBCCCCEEEETTSCEEEECBCC-------------------------CEESCCEEEEEETTEEECT--------T
T ss_pred             ccccceeCCCceEecCCCcEEEEEecC-------------------------CCCCCCEEEEEECCccCCC--------C
Confidence            355666667778899999999999872                         1234678999998765421        1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEEEcCCccc
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEVVIPPDIS  140 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v~~~~~~~  140 (238)
                      ..++.....     +|.|.+++.+|+|.|+|.+.|.....  ..+.|.|..+|.+.
T Consensus       157 ~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          157 DERITIRGG-----KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             STTEEEETT-----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             cceEEccCC-----eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence            223333222     89999999999999999998864432  23678888777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.13  E-value=1.3e-10  Score=92.68  Aligned_cols=88  Identities=24%  Similarity=0.423  Sum_probs=65.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+ +.|.|.+.|+++++.......   .........++.|.|.+++.+|+|.|+|.|.|..|. 
T Consensus       348 ~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-  422 (440)
T 3zyj_A          348 PADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGA---YKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-  422 (440)
T ss_dssp             CCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSS---CCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCE-
T ss_pred             ccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccC---CCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCc-
Confidence            455778999999999999 568899999996655443211   112333344567999999999999999999999994 


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      .+.++.+.|..+|
T Consensus       423 ~~~~~~~~v~~~~  435 (440)
T 3zyj_A          423 TTASATLNVTGTH  435 (440)
T ss_dssp             EEEEEEEEEC---
T ss_pred             EEEEEEEEEeccc
Confidence            4888888888765

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=99.13  E-value=6.9e-10  Score=72.20  Aligned_cols=84  Identities=19%  Similarity=0.341  Sum_probs=59.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...+..+.+.+|++++|.|.+....                        .+.+.+.||++......   ...+...+|+
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~------------------------~~~~~v~Wyrq~~g~~~---~~~~~~~~R~   55 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDSR------------------------CVLSTGYWYRKPPGSRN---EESISDGGRY   55 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSCC------------------------CCEEEEEEEEECTTCSC---CEEECSBTTE
T ss_pred             cEECCcEEEEecCCcEEEEeEccCCC------------------------CCCCEEEEEEeCCCCCc---eeeEecCCCe
Confidence            45678889999999999999986421                        01346999996421111   0112245677


Q ss_pred             EEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          91 SVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        91 ~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .... .....++|+|.+++.+|+|.|.|.+..
T Consensus        56 ~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N           56 VETVNRGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             EEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCCEEEEEECCCChhhCEEEEEEEec
Confidence            6543 345678999999999999999999863

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.12  E-value=2.1e-10  Score=80.90  Aligned_cols=87  Identities=29%  Similarity=0.473  Sum_probs=62.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+...... ............|.|.++..+|.|.|+|.+.|..|. 
T Consensus        12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-   88 (194)
T 2a38_A           12 LQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLP-GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ-   88 (194)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCCTTTST-TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-
T ss_pred             CCceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcccccCC-ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce-
Confidence            344678899999999999999999999999 44433221100 001111122347999999999999999999999884 


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      ....+.|.|.
T Consensus        89 ~~~~~~l~v~   98 (194)
T 2a38_A           89 ATSTAELLVK   98 (194)
T ss_dssp             EEEEEEEEEE
T ss_pred             EeEEEEEEEc
Confidence            3666777776

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=99.12  E-value=4.6e-10  Score=72.31  Aligned_cols=86  Identities=22%  Similarity=0.407  Sum_probs=57.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--c---e-eeeeeeee--
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--T---K-AVLAIHEH--   82 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~---~-~~~~~~~~--   82 (238)
                      +...|..+.+.+|++++|.|.+....                         +...+.||+..  .   . .+......  
T Consensus         3 ~~q~p~~v~v~~G~~vtL~C~~~~~~-------------------------~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~   57 (114)
T 2hp4_A            3 FRVSPLDRTWNLGETVELKCQVLLSN-------------------------PTSGASWLFQPRGAAASPTFLLYLNQNKP   57 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSS-------------------------CCSCEEEEEEESSSSCCCEEEEEESSSSC
T ss_pred             cEeCCCEEEEcCCCCEEEEEEeecCC-------------------------CCceEEEEEECCCCCCCcEEEEEEcCCCc
Confidence            45667888899999999999996321                         12359999852  2   1 11111110  


Q ss_pred             Eee---cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          83 VIT---NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        83 ~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...   ...||..... ...++|+|.+++.+|+|.|.|.+.+.
T Consensus        58 ~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           58 KAAEGLDTQRFSGKRL-GDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EECTTCCTTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cccCCCCcccEEEEec-CCEEEEEECCCCHHHCEEEEEEEecC
Confidence            011   1467877653 45679999999999999999998653

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.12  E-value=4.5e-10  Score=71.85  Aligned_cols=93  Identities=18%  Similarity=0.361  Sum_probs=58.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----eeEee--cC
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----EHVIT--NN   87 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~--~~   87 (238)
                      +...+.+.+|++++|.|.+..  +                       .+.+.+.|++..+..+....    .....  ..
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~--~-----------------------~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~   63 (110)
T 2ptt_A            9 SIPDINAYTGSNVTLKIHKDP--L-----------------------GPYRRITWLHTKNQKILEYNYNSTKTIFESEFK   63 (110)
T ss_dssp             CCCSEEEETTSCEEECSCSSC--C-----------------------CSCSEEEEEESTTBEEEEEETTSCEEECSSTTT
T ss_pred             CCCCEEEecCCcEEEeCCccC--C-----------------------CCcCEEEEEecCCccEEEEECCCCceeeccccC
Confidence            345678999999999999731  1                       12346999995433211110    00111  12


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      +|+.+..   ..++|.|.+++.+|+|.|+|.+.+.......+.|.|.
T Consensus        64 ~R~~~~~---~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~L~V~  107 (110)
T 2ptt_A           64 GRVYLEE---NNGALHISNVRKEDKGTYYMRVLRETENELKITLEVF  107 (110)
T ss_dssp             TTEEECT---TTCCEEESSCCGGGCEEEEEEEESSSBCCEEEEEEEE
T ss_pred             CcEEEeC---CCccEEECCCCcccCeEEEEEEEcCCCcEEEEEEEEE
Confidence            4666532   4558999999999999999999765433445556665

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=99.12  E-value=5e-10  Score=71.90  Aligned_cols=84  Identities=14%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~   85 (238)
                      +...+..+.+.+|++++|.|.+....                          .+.+.|++....    .+.... .....
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~~   56 (112)
T 2z35_A            3 VTQTGGQVALSEEDFLTIHCNYSASG--------------------------YPALFWYVQYPGEGPQFLFRASRDKEKG   56 (112)
T ss_dssp             EECSCSEEEEETTCCEEECCEEECSS--------------------------CCEEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred             eEeCCCcEEEcCCCCEEEEEEECCCC--------------------------CCeEEEEEECCCCCcEEeEEEecccCCc
Confidence            45667889999999999999986431                          345999996421    111110 00011


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..+||.+.. .....++|.|.+++.+|+|.|.|.+.
T Consensus        57 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   92 (112)
T 2z35_A           57 SSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS   92 (112)
T ss_dssp             EETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            246777763 34467799999999999999999986

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=99.11  E-value=5.6e-10  Score=71.67  Aligned_cols=85  Identities=11%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeee---e
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHE---H   82 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~---~   82 (238)
                      .+...+..+.+.+|++++|.|.+.+..                          .+.+.||+....    .+.....   .
T Consensus         3 ~v~q~p~~~~v~~G~~vtL~C~~~~~~--------------------------~~~v~W~rq~~~~~~~~l~~~~~~~~~   56 (112)
T 1fo0_B            3 LLEQNPRWRLVPRGQAVNLRCILKNSQ--------------------------YPWMSWYQQDLQKQLQWLFTLRSPGDK   56 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTT--------------------------CCEEEEEEECTTCCEEEEEECCSTTCE
T ss_pred             cEEeCCCeEEEecCCcEEEEEEeCCCC--------------------------CceEEEEEECCCCCCEEEEEEeCCCce
Confidence            345667888999999999999986322                          345999986421    1111100   0


Q ss_pred             E-eec-CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          83 V-ITN-NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        83 ~-~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      . -.. ++||.+......  +|.|.+++.+|+|.|.|.+...
T Consensus        57 ~~~~~~~~Rf~~~~~~~~--~L~I~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           57 EVKSLPGADYLATRVTDT--ELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             EEEEETTEEEEEEEEETT--EEEEEEESCCSCEEEEEEEESS
T ss_pred             ecCccccCCEEEEcCCCC--eEEEcCCCHhHCEEEEEEEEcC
Confidence            0 001 267777654333  8999999999999999998653

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.11  E-value=4.3e-10  Score=73.95  Aligned_cols=86  Identities=16%  Similarity=0.407  Sum_probs=55.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee--eeeeeeeEeecC
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA--VLAIHEHVITNN   87 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~~~   87 (238)
                      .+..++..+.+.+|++++|.|.+....                         +.+.+.||++.+..  .......  ...
T Consensus         5 ~v~q~p~~~~v~~G~~vtL~C~~~~~~-------------------------~~~~v~W~r~~~~~~~li~~~~~--~~~   57 (127)
T 2jju_A            5 QVIQPEKSVSVAAGESATLRCAMTSLI-------------------------PVGPIMWFRGAGAGRELIYNQKE--GHF   57 (127)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCC-------------------------SCCCEEEEECSSTTCEEEEESSS--SCC
T ss_pred             EEEeeCCeEEEeCCCCEEEEEEEeCCC-------------------------CCCEEEEEecCCCCcEEEEECCC--Ccc
Confidence            445677889999999999999986321                         23469999976321  1111000  001


Q ss_pred             ccEEEEE----cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          88 ARLSVTH----NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        88 ~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .|+....    .....++|.|.+++.+|+|.|+|.+.+.
T Consensus        58 ~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (127)
T 2jju_A           58 PRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK   96 (127)
T ss_dssp             TTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            2454321    1224568999999999999999998764

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.11  E-value=1.3e-09  Score=72.36  Aligned_cols=88  Identities=20%  Similarity=0.271  Sum_probs=58.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee---eeeee-----
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV---LAIHE-----   81 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~~~~~-----   81 (238)
                      .+..++..+.+.+|++++|.|.+...                       .+.+.+.+.|++++....   .....     
T Consensus         6 ~v~~~~~~v~v~~G~~v~L~C~~~~~-----------------------~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~   62 (135)
T 1xt5_A            6 TVRTTHTEVEVHAGGTVELPCSYQLA-----------------------NDTQPPVISWLKGASPDRSTKVFKGNYNWQG   62 (135)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEEEE-----------------------TCCSCCEEEEEEESSSSSEEEEEEEEECCCC
T ss_pred             EEeCCCceEEEeCCCCEEEeeEeecC-----------------------CCCCccEEEEEeeCCCCCceEEEEecccccc
Confidence            44567788999999999999998631                       112356799999754321   11100     


Q ss_pred             -----------eE--eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          82 -----------HV--ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        82 -----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                                 ..  ....+|+.+..  ....+|.|.+++.+|+|.|+|.+.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~sL~I~~v~~~D~G~Y~C~v~~~  114 (135)
T 1xt5_A           63 EGLGFVESDSYKESFGDFLGRASVAN--LAAPTLRLTHVHPQDGGRYWCQVAQW  114 (135)
T ss_dssp             TTCCCCTTSEEEEECGGGTTTEEESC--TTSCCEEECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccccccccChhhcCcEEEec--CCCCeEEECCCChhhCcEEEEEEEcC
Confidence                       00  01125666533  33468999999999999999999764

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.10  E-value=5e-10  Score=71.57  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCe----eeE-e-------ecCCCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNK----EII-V-------RSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~~-~-------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+|+++.|.|.....+...+.|+++...    .+. -       ...+....+.....+++|.|.+++.+|+|.|+|.
T Consensus        11 ~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~   90 (111)
T 2qsq_A           11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLH   90 (111)
T ss_dssp             EEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             eeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEE
Confidence            577899999999753333447999994321    111 0       0011123444555678999999999999999999


Q ss_pred             eeeCCCCCccceEEEEEEee
Q psy7941         217 AANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       217 ~~n~~g~~~~~~~~l~V~~~  236 (238)
                      +.+..+.....++.|.|..+
T Consensus        91 v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           91 VIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             EEETTSCCEEEEEEEEEECC
T ss_pred             EEeCCCcEEEEEEEEEEecC
Confidence            99987644577888888753

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=82.95  Aligned_cols=79  Identities=28%  Similarity=0.347  Sum_probs=63.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..            .....|.|.++..+|+|.|+|.+.|..|..
T Consensus        25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           25 PESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPN------------GNTSELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             CCCEEEETTSBEEEECEETTTTSSEEEEEE-TTEECTT------------CCSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             CCCeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECCC------------CCCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            455678899999999999999999999999 4443321            124579999999999999999999998865


Q ss_pred             ccceEEEEEEee
Q psy7941         225 VSKRLMLHVHCT  236 (238)
Q Consensus       225 ~~~~~~l~V~~~  236 (238)
                      .+..+.|.|...
T Consensus        92 ~s~~~~l~V~~~  103 (218)
T 3k0w_A           92 FSQWSQLDVCDI  103 (218)
T ss_dssp             ECCCEEEEEECC
T ss_pred             eeeEEEEEEEcc
Confidence            567778888754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.10  E-value=3.3e-10  Score=80.93  Aligned_cols=92  Identities=23%  Similarity=0.470  Sum_probs=65.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeec-----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRS-----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++........     ....... .......|.|.++..+|.|.|+|.+.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~L~i~~v~~~D~G~Y~C~~~~   86 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR-VTFSSSGITFSSVTRKDNGEYTCMVSE   86 (212)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTT-EEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCc-EEeeceeEEEcccCcccCeEEEEEEEc
Confidence            4556788999999999999989999999995544211100     0001112 223347899999999999999999999


Q ss_pred             CCCC-CccceEEEEEEeec
Q psy7941         220 GVPP-TVSKRLMLHVHCTY  237 (238)
Q Consensus       220 ~~g~-~~~~~~~l~V~~~p  237 (238)
                      ..|. ..+..+.|.|..+|
T Consensus        87 ~~g~~~~~~~~~l~V~~~p  105 (212)
T 1f97_A           87 EGGQNYGEVSIHLTVLVPP  105 (212)
T ss_dssp             TTSSSEEEEEEEEEEEBCC
T ss_pred             cCCCcccEEEEEEEEEcCC
Confidence            8762 23567888888776

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=99.10  E-value=7.3e-10  Score=71.62  Aligned_cols=86  Identities=15%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC-ce-----eeeeeee--eEee
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD-TK-----AVLAIHE--HVIT   85 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~-----~~~~~~~--~~~~   85 (238)
                      ++..+.+.+|++++|.|.+.....                        ....+.|++.. ..     .+.....  ....
T Consensus         2 s~~~v~~~~G~~vtL~C~~~~~~~------------------------~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~   57 (116)
T 3bia_X            2 SEDTIIGFLGQPVTLPCHYLSWSQ------------------------SRNSMCWGKGSCPNSKCNAELLRTDGTRIISR   57 (116)
T ss_dssp             -CEEEEEETTSCEEECCBCTTCCT------------------------TTCEEEEEESSCCSSSCTTEEEEECSSSEEEE
T ss_pred             CccEEEEeeCCcEEEEEEeeCCCC------------------------CeEEEEEeeecCCCCCCceEEEEECCcccccc
Confidence            356788999999999999852110                        12359999976 21     1111111  1122


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...|+.+.. ...+.++|+|.+++.+|+|.|.|.+...+
T Consensus        58 ~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~   96 (116)
T 3bia_X           58 KSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPG   96 (116)
T ss_dssp             SSTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECSS
T ss_pred             cCceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcCC
Confidence            345666543 23467799999999999999999997543

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=99.10  E-value=1.4e-09  Score=71.26  Aligned_cols=88  Identities=14%  Similarity=0.237  Sum_probs=61.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee--
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE--   81 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~--   81 (238)
                      ...+..++..+.+.+|++++|.|.+....                          ...+.||+...  .  .+.....  
T Consensus         5 ~~~V~Q~p~~~~v~~G~~vtL~C~~~~~~--------------------------~~~v~Wyrq~~g~~~~~l~~~~~~~   58 (125)
T 3r8b_B            5 EAAVTQSPRNKVAVTGEKVTLSCKQTNSY--------------------------FNNMYWYRQDTGHELRLIFMSHGIR   58 (125)
T ss_dssp             CCEEEEECSEEEEETTCCEEEEEEEESCC--------------------------CSEEEEEEECTTSCEEEEEEESSTT
T ss_pred             cCcEEecCCeEEEcCCCcEEEEEEECCCC--------------------------CCeEEEEEECCCCCcEEEEEEcCCc
Confidence            34567788899999999999999986421                          23599998532  1  1111100  


Q ss_pred             --eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                        ..-...+||.+.......++|+|.+++.+|+|.|+|.+..
T Consensus        59 ~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~  100 (125)
T 3r8b_B           59 NVEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGG  100 (125)
T ss_dssp             CCEECSSCTTCEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             cccCCCCCCceEEEecCCCEEEEEECCCChhhCEEEEEEEcC
Confidence              0111246787765446788999999999999999999854

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.10  E-value=4.4e-10  Score=80.00  Aligned_cols=79  Identities=22%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      +.+..|+++.|.|.+ +.|.|  .|.|++.+.. +        ...........|.|.+++.+|.|.|.|.+.|..+ ..
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~-l--------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~   85 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTS-L--------GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR-TF   85 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTT-T--------CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE-EE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccc-c--------CcEEecCCccEEEECccCcccCceEEEEEEeCCC-ce
Confidence            578899999999999 87777  9999984422 1        0111123345799999999999999999999887 45


Q ss_pred             cceEEEEEEeec
Q psy7941         226 SKRLMLHVHCTY  237 (238)
Q Consensus       226 ~~~~~l~V~~~p  237 (238)
                      .+.+.|.|+.+|
T Consensus        86 ~~~~~ltV~~~P   97 (210)
T 1gsm_A           86 QHTVQLLVYAFP   97 (210)
T ss_dssp             EEEEEEEEEBCC
T ss_pred             EEEEEEEEEecC
Confidence            789999999887

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.09  E-value=4.3e-10  Score=71.86  Aligned_cols=86  Identities=17%  Similarity=0.309  Sum_probs=57.3

Q ss_pred             eeccCceeEEEecCCEEEEeE-EecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--e-eeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCV-VNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--H-EHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~-~~~~~~   86 (238)
                      +.. |..+.+.+|++++|.|. +.....                         .+.+.|++.......-.  . ......
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~-------------------------~~~v~W~r~~~~~~~l~~~~~~~~~~~   57 (109)
T 1pew_A            4 LNQ-PHSVSESPGKTVTISCTRSSGNIA-------------------------SNYVQWYQQRSAPITVIYEDNQRPSGV   57 (109)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSSCGG-------------------------GSCCEEEEC-CCCEEEEBTTTBCCTTC
T ss_pred             EEC-CCCEEEcCCCCEEEEEEeCCCCCC-------------------------CccEEEEEECCCCcEEEEecCCcCCCC
Confidence            345 67889999999999999 653210                         24599999762211100  0 000012


Q ss_pred             CccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 NARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .+|+.+.. .....++|+|.+++.+|+|.|.|.+.+.
T Consensus        58 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           58 PDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             CTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            46787764 3456789999999999999999999653

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=99.09  E-value=1.4e-09  Score=71.50  Aligned_cols=87  Identities=17%  Similarity=0.403  Sum_probs=60.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-------eeeeee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-------AVLAIH   80 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-------~~~~~~   80 (238)
                      .+.+...+..+.+.+|++++|.|.+.+...                          ..+.||+....       .+....
T Consensus         4 ~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~--------------------------~~v~WyrQ~~g~~l~~p~~l~~~~   57 (128)
T 1nez_G            4 APELRIFPKKMDAELGQKVDLVCEVLGSVS--------------------------QGCSWLFQNSSSKLPQPTFVVYMA   57 (128)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCS--------------------------SCEEEEEEESSCSSCCCEEEEEEC
T ss_pred             CCeeEECCCeEEEcCCCCEEEEEEeCccCC--------------------------CcEEEEEeCCCCCCCCcEEEEEEe
Confidence            466778888999999999999999864321                          24899985321       111111


Q ss_pred             e---eEe-----ecCccEEE-EEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          81 E---HVI-----TNNARLSV-THNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        81 ~---~~~-----~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .   ...     ....||.. .. ....+.|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~~~~rfs~~~~-~~~~~~L~I~~~~~~Dsg~YyCa~~~  106 (128)
T 1nez_G           58 SSHNKITWDEKLNSSKLFSAMRD-TNNKYVLTLNKFSKENEGYYFCSVIS  106 (128)
T ss_dssp             SSSCCEEECTTTTGGGTEEEEEE-TTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cccCCceeeccccCCCcEEEEeC-CCCEEEEEECCCCHHHCEEEEEEEcC
Confidence            1   000     01368887 54 34578999999999999999999854

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.09  E-value=2.5e-10  Score=80.86  Aligned_cols=81  Identities=16%  Similarity=0.225  Sum_probs=58.8

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccc
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK  227 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~  227 (238)
                      .+.+|+.+.|.|.+.+ |.+.+.|++++. .+.....    ..........|.|.++..+|+|.|+|.|.|..| ...+.
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~-~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~   88 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEES-PAPWDRQ----NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSD   88 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTS-CSCSEEE----CCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCC
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCC-CCccccc----ccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCc
Confidence            6788999999999988 778999999543 3221100    000012345799999999999999999999987 34567


Q ss_pred             eEEEEEEe
Q psy7941         228 RLMLHVHC  235 (238)
Q Consensus       228 ~~~l~V~~  235 (238)
                      .+.|.|..
T Consensus        89 ~~~l~V~~   96 (196)
T 3p2t_A           89 PLELVMTG   96 (196)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEecC
Confidence            77777753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.09  E-value=6.5e-10  Score=70.34  Aligned_cols=75  Identities=19%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+.+|+.+.|.|.+ +.|.+.+.|++ ++..+....     ........+   .|.|.++..+|+|.|+|.+.+.    
T Consensus        26 ~~v~~G~~v~L~C~~-~~p~~~v~W~k-~g~~l~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~----   94 (104)
T 1pd6_A           26 YQVSKGHKIRLTVEL-ADHDAEVKWLK-NGQEIQMSG-----SKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE----   94 (104)
T ss_dssp             EEEETTSCEEEEEEC-SSSSSCCEEEE-SSSEECCCS-----SSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE----
T ss_pred             EEEecCCCEEEEEEE-cCCCCEEEEEE-CCEECCCCC-----CeEEEEecCCEEEEEECCCCcccCEEEEEEECCC----
Confidence            678899999999999 78888999999 554443210     111112222   7999999999999999999442    


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       ..+..|.|.
T Consensus        95 -~~~~~l~V~  103 (104)
T 1pd6_A           95 -KCSTELFVK  103 (104)
T ss_dssp             -EECCEEEEE
T ss_pred             -cEEEEEEEe
Confidence             344455554

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.08  E-value=1.9e-09  Score=66.53  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      .....+..|+.+.|.|.+..                         ..+.|+++|.|.++........   ....+.+...
T Consensus        21 ~S~~tv~~G~~~~LeCpv~y-------------------------c~~rPnVtWcK~~~~~c~~L~~---~~q~~~~w~e   72 (122)
T 1xau_A           21 NSKHSAWTGELFKIECPVKY-------------------------CVHRPNVTWCKHNGTIWVPLEV---GPQLYTSWEE   72 (122)
T ss_dssp             TEEEEECTTSCEEEEEEEEC-------------------------SSSCCCEEEEEECSSSEEECCC---BTTEEEEEEC
T ss_pred             eccEEEecCCeEEEEeEecC-------------------------CCCCCcEEEEecCCeecccccc---ceeeecceec
Confidence            34567889999999999963                         2347789999987643332110   0111222222


Q ss_pred             c-CCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEE
Q psy7941          95 N-DANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVV  134 (238)
Q Consensus        95 ~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~  134 (238)
                      . +...+.|+|.++..+|+|.|.|.|.+...  .+....|.|.
T Consensus        73 ~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~  115 (122)
T 1xau_A           73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR  115 (122)
T ss_dssp             SSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cCCceeEEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEE
Confidence            2 22567999999999999999999977432  3334445554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.08  E-value=7.3e-10  Score=80.80  Aligned_cols=87  Identities=17%  Similarity=0.325  Sum_probs=59.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~   84 (238)
                      .+...+..+.+.+|+++.|.|.+.+                          .|.+.+.|+|++..    .+... .....
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~--------------------------~p~~~i~W~k~~~~~~~~~~~~~~~~~~~  182 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYEN--------------------------SAFDYFPWYQQFPGEGPALLISILSVSDK  182 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCC--------------------------TTCCEEEEEEECTTSCCEEEEEEETTCSE
T ss_pred             eEEccCceEEEeCCCeEEEEEEEec--------------------------CCCCcEEEEEECCCCCCEEEEEEccCCCc
Confidence            5666778888999999999999853                          33567999996421    11110 00011


Q ss_pred             ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ....|+.+.. ......+|.|.+++.+|+|.|+|.+.|.
T Consensus       183 ~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          183 KEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             EEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            2245666653 2345669999999999999999999875

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.08  E-value=1.1e-09  Score=73.13  Aligned_cols=90  Identities=18%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             ceeecCCCcEEEEEEEcccc---CCeEEEEeCCCe-eeE-eecC--------CCCCcceEEEe------eceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNK-EII-VRSN--------PPSSQKVFSVE------SEVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~-~~~-~~~~--------~~~~~~~~~~~------~~~l~i~~~~~  207 (238)
                      .+.+..|+++.|.|.+.+.+   .+.+.|++.+.. .+. ....        .....+.....      ...|.|.+++.
T Consensus        15 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   94 (139)
T 1pko_A           15 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   94 (139)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCH
Confidence            45688899999999987644   368999995432 111 1000        00112222211      34799999999


Q ss_pred             CCCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         208 SEMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       208 ~d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +|+|.|+|.+.+..| .....+.|.|..|+
T Consensus        95 ~D~G~Y~C~v~~~~~-~~~~~~~L~V~~P~  123 (139)
T 1pko_A           95 SDEGGYTCFFRDHSY-QEEAAVELKVEDPF  123 (139)
T ss_dssp             GGCEEEEEEEEETTE-EEEEEEEEEEECTT
T ss_pred             HHCEEEEEEEEcCCC-ceEEEEEEEEecCc
Confidence            999999999999887 44778889888554

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.08  E-value=5.5e-10  Score=72.65  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~-~~~~~   85 (238)
                      +..++ .+.+.+|++++|.|.+.....                       ...+.+.||+...  ..  +.... .....
T Consensus         4 v~q~~-~~~~~~G~~v~L~C~~~~~~~-----------------------~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~   59 (120)
T 1oaq_L            4 VTQES-ALTTSPGETVTLTCRSSTGAV-----------------------TTSNYANWVQEKPDHLFTGLIGGTNNRAPG   59 (120)
T ss_dssp             EEECS-EEEECTTCEEEEEEEETTBCC-----------------------CGGGCCEEEEEETTTEEEEEEETTTEECTT
T ss_pred             EEcCC-cEEEcCCCCEEEEEEeCCCcc-----------------------CCCCEEEEEEeCCCCCCeEEEEEcCccCCC
Confidence            34444 489999999999999864320                       0124599998632  11  11110 01011


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..+|+.... ....++|+|.+++.+|+|.|.|.+.+.
T Consensus        60 ~~~R~~~~~-~~~~~~L~I~~~~~~DsG~Y~C~~~~~   95 (120)
T 1oaq_L           60 VPARFSGSL-IGNKAALTITGAQTEDEAIYFCALWYS   95 (120)
T ss_dssp             SCTTEEEEE-ETTEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             CCCceEEec-CCCeEEEEECCCChhhCeEEEEEEccC
Confidence            246787765 346779999999999999999999654

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.08  E-value=1.3e-09  Score=70.27  Aligned_cols=85  Identities=20%  Similarity=0.407  Sum_probs=57.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeeee---eE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIHE---HV   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~~---~~   83 (238)
                      +.. +..+.+.+|++++|.|.+....                         +.+.+.|++...  .  .+.....   ..
T Consensus         5 v~q-p~~~~~~~G~~v~L~C~~~~~~-------------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~   58 (115)
T 2otu_A            5 LTQ-SSSASFSLGASAKLTCTLSSQH-------------------------STYTIEWYQQQPLKPPKYVMELKKDGSHS   58 (115)
T ss_dssp             EEE-CCCEECCTTCCEEEEEEECGGG-------------------------TTCCEEEEEECTTSCCEEEEEECTTSCEE
T ss_pred             EEc-CCCEEECCCCCEEEEEEecCCC-------------------------CCeEEEEEEeCCCCCceEEEEEecCCcee
Confidence            445 6788999999999999986421                         134599998532  1  1111110   11


Q ss_pred             ee--cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 IT--NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 ~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..  ..+|+.+.. ....++|+|.+++.+|+|.|.|.+.+.
T Consensus        59 ~~~~~~~R~~~~~-~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   98 (115)
T 2otu_A           59 TGDGIPDRFSGSS-SGADRYLSISNIQPEDEAIYICGVGDT   98 (115)
T ss_dssp             ECTTCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred             cCcccCCCEEEEc-cCCEEEEEECCCChhHCEEEEEEEecC
Confidence            11  146888775 356679999999999999999998653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.08  E-value=2.3e-10  Score=88.91  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +..+.+.+|+.+.|.|.+.| |.|.+.|+++++......   ........ .++.|.|.+++.+|+|.|+|.|.|..| .
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~---~~~~r~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g-~  326 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ---GSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMGETF-N  326 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSC---CSSSSEEE-ETTEEEESSCCTTSCEEEEEEEECSSC-E
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeec---ccCCceEe-ecCeEEEeecCcccCEEEEEEEecCCC-c
Confidence            34567899999999999999 999999999555433211   11112223 667899999999999999999999988 4


Q ss_pred             ccceEEEEEEee
Q psy7941         225 VSKRLMLHVHCT  236 (238)
Q Consensus       225 ~~~~~~l~V~~~  236 (238)
                      .+.++.|.|...
T Consensus       327 ~~~~~~l~V~~~  338 (361)
T 2xot_A          327 ETLSVELKVYNF  338 (361)
T ss_dssp             EEEEEEEEEESS
T ss_pred             cEEEEEEEEEee
Confidence            477888888643

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.08  E-value=6.2e-10  Score=72.16  Aligned_cols=71  Identities=8%  Similarity=0.066  Sum_probs=43.0

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                      +.|.+.+.|+|++..+....       ..++..... .....+|.|.+++.+|+|.|+|.+.|..+ ....+.+.|...|
T Consensus        31 g~P~p~i~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           31 GNPPPTLHWLHNGQPLRESK-------IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             CSSCCEEEEEETTEECCCSS-------SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             eeCCCeEEEEECCEECCCCC-------ceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEccCC
Confidence            35577899999876543211       011111110 01233899999999999999999988643 3344445554444

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.07  E-value=3.6e-10  Score=81.82  Aligned_cols=86  Identities=23%  Similarity=0.390  Sum_probs=64.5

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.....  ............|.|.++..+|.|.|+|.+.|..|. .
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-I  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-E
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEE-CCcccccccc--ccceeeecCcceEEEecCCcccCEEEEEEEecccCc-c
Confidence            45678899999999999999999999999 5554432211  111122334457999999999999999999999884 3


Q ss_pred             cceEEEEEEe
Q psy7941         226 SKRLMLHVHC  235 (238)
Q Consensus       226 ~~~~~l~V~~  235 (238)
                      ...+.|.|..
T Consensus       103 ~~~~~l~V~~  112 (231)
T 3ojm_B          103 NHTYHLDVVE  112 (231)
T ss_dssp             EEEEEEEEEC
T ss_pred             cccEEEEEEc
Confidence            6777777765

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=99.07  E-value=7e-09  Score=66.91  Aligned_cols=85  Identities=21%  Similarity=0.332  Sum_probs=55.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeee---eeEe--e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIH---EHVI--T   85 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~---~~~~--~   85 (238)
                      +..+.+.+|++++|.|.+......                       +...+.||+...    ..+....   ....  .
T Consensus         5 ~~~~~~~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~   61 (116)
T 3bj9_1            5 PPAMSSALGTTIRLTCTLRNDHDI-----------------------GVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQ   61 (116)
T ss_dssp             CSEEEEETTCCEEEEEEECSSSCG-----------------------GGCCEEEEEECTTSCCEEEEEEEETTEEEECTT
T ss_pred             CCcEEEcCCCcEEEEEEeecCccC-----------------------CCceEEEEEeCCCCCcEEEEEEecCCCceeCcc
Confidence            346889999999999999642100                       134599998642    1121111   0111  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..+|+.+..... ..++|+|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~   99 (116)
T 3bj9_1           62 VPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGAR   99 (116)
T ss_dssp             CCTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCS
T ss_pred             CCCcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCC
Confidence            246787765433 4679999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	8e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-08
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-07
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.004
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	8e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	4e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-06
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-05
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	2e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-05
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	3e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	4e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	4e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.004
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.001
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	4e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	8e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.002
d2g5ra1	121	b.1.1.1 (A:24-144) N-terminal domain of sialic aci	0.002
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	0.002
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.002
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.003
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.003
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.004
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.004
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.004

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 2e-12
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           +PP + + ++  +     G S  LVC A G+P P ++W +  + E I        + +FS
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK--DGEPIENEEEDDEKHIFS 59

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVHC 235
            +S  L++  V +++   Y CIA N         + L V  
Sbjct: 60  DDSSELTIRNVDKNDEAEYVCIAENKA-GEQDASIHLKVFA 99

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-10
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
            + V +G   KL C  +G   P I W ++      +        +   +    L    V 
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK--SVE 62

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
           RS+ G Y C   +G    +S+ + L V
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
           VP   + K  C A G P P + W +   +    +            +   L +  V  S+
Sbjct: 17  VPAANTVKFRCPAGGNPMPTMRWLKNGKE---FKQEHRIGGYKVRNQHWSLIMESVVPSD 73

Query: 210 MGAYQCIAANGVPPTVSKRLMLHV 233
            G Y C+  N    +++    L V
Sbjct: 74  KGNYTCVVENEY-GSINHTYHLDV 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.9 bits (126), Expect = 4e-10
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P I ++  + D     G    L C A G P P+I WR+ D  +     +          
Sbjct: 4   APSIKAKFPA-DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP------- 55

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
              +L +  V   + G Y+C A N      + +  + +H
Sbjct: 56  ---LLHIQNVDFEDEGTYECEAENIK-GRDTYQGRIIIH 90

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.5 bits (125), Expect = 6e-10
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P    +     ++V +G    + CK  G P P + W          R          +V
Sbjct: 2   APKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR---------ATV 51

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
               L +  V   + G Y C A N          ++ V+
Sbjct: 52  TDSGLVIKGVKNGDKGYYGCRATNEH-GDKYFETLVQVN 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLT 203
            S DMM   G    + C     P     + +          +  +     S +   L   
Sbjct: 9   VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR--LLFK 66

Query: 204 KVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
                + G Y C   NGV       L L V
Sbjct: 67  TTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNK---------EIIVRSNPPSSQKVFSVES 197
           +     GG  + VCK      P I W +   K            ++    +       E 
Sbjct: 14  NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 73

Query: 198 EVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           EVL +  VT  + G Y C+A N +         L V
Sbjct: 74  EVLYIRNVTFEDAGEYTCLAGNSI-GISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 9e-04
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 24/120 (20%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA 75
            N +   G D  F C V +                                  ++ +   
Sbjct: 13  ANASTVVGGDVEFVCKVYS----------------------DAQPHIQWI-KHVEKNGSK 49

Query: 76  VLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLEVV 134
                   +       V   D     L IR+V  ED G Y C   N+  ++   A+L V+
Sbjct: 50  YGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.6 bits (112), Expect = 3e-08
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
           D     G   +  C A G P P + W R+          P +SQ    V    L  +K+ 
Sbjct: 10  DTEADIGSDLRWSCVASGKPRPAVRWLRDG--------QPLASQNRIEVSGGELRFSKLV 61

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
             + G YQC+A N    TV     L V
Sbjct: 62  LEDSGMYQCVAENKH-GTVYASAELTV 87

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 4e-08
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
           D  V  G S +L  K  G      TW +   +           +   S     L++    
Sbjct: 9   DQKVRAGESVELFGKVTGTQPITCTWMKFRKQ----IQESEHMKVENSENGSKLTILAAR 64

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +   G Y  +  N +  +   ++ L V
Sbjct: 65  QEHCGCYTLLVENKL-GSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-05
 Identities = 21/131 (16%), Positives = 31/131 (23%), Gaps = 37/131 (28%)

Query: 9   PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAW 68
           P  +   E+  +  G        V                          T +  +   W
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKV--------------------------TGTQPITCTW 34

Query: 69  IKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQ 127
           +                  +      N  N   L I + R+E  G Y   V N     + 
Sbjct: 35  M----------KFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 84

Query: 128 MAFLEVVIPPD 138
              L VV  PD
Sbjct: 85  QVNLTVVDKPD 95

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-08
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 1/88 (1%)

Query: 146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
            ++ V  G  A   C A G          +                         ++   
Sbjct: 9   QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS-SRRFIASFNVVNT 67

Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           T+ + G Y+C+        +S    L V
Sbjct: 68  TKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 141 SEETSGDMMVPEGGSAKLVC------KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           + +      +P  G   LVC      K +    PK+ W ++                 FS
Sbjct: 2   NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK-------PLLLDNIHFS 54

Query: 195 VESEVLSLTKVTRSEMGAYQCIAAN---GVPPTVSKRLMLHV 233
              + L +  V     G Y C A+    G    +++ +    
Sbjct: 55  GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFIT 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 136 PPDISSEETSGDMMVPEGG---SAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKV 192
            P    +      + PEG       L C+A+  P     W+    +            + 
Sbjct: 4   GPVFEEQPA--HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL-----KMGPDSRY 56

Query: 193 FSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLML 231
             V  +++    V   + G+YQC+A N     VS+   L
Sbjct: 57  RLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 3e-07
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
            M V EG SA+  C   G P P +TW R+      V S     Q   +       ++ V 
Sbjct: 8   SMTVYEGESARFSCDTDGEPVPTVTWLRKGQ----VLSTSARHQVTTTKYKSTFEISSVQ 63

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
            S+ G Y  +  N           L +
Sbjct: 64  ASDEGNYSVVVENSE-GKQEAEFTLTI 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
              V EG SA   C+      P +TW ++D +            K ++     L++ +V 
Sbjct: 10  GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK----QSVKYMKRYNGNDYGLTINRVK 65

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHV 233
             + G Y   A N    T  + + L+V
Sbjct: 66  GDDKGEYTVRAKNSY-GTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 37/132 (28%)

Query: 8   EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA 67
           +P F+       + +G+ A F C V                            SS   V 
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRV--------------------------IASSPPVVT 34

Query: 68  WIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTK 126
           W            +      +   +   + N + L I  V+ +D+G Y  +  N+    +
Sbjct: 35  W----------HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKE 84

Query: 127 QMAFLEVVIPPD 138
           ++ FL V    +
Sbjct: 85  EIVFLNVTRHSE 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 8e-07
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
              V +G  A    +  G P P+  W +   K            +    E  +     VT
Sbjct: 13  SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI---RDVT 69

Query: 207 RSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +  +    A N      S    L V 
Sbjct: 70  GEDSASIMVKAINIA-GETSSHAFLLVQ 96

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-07
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P +   +  G+   PE      +C+A G P P++   ++    + +  +   ++ +   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGT 61

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                            Y C A +     V++ + ++V 
Sbjct: 62  -----------------YLCRARSTQ-GEVTREVTVNVL 82

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
                EG  A +VC       P I W+ +    I+ +           ++     +  + 
Sbjct: 10  PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-----IRGIK 64

Query: 207 RSEMGAYQCIAAN 219
           +++ G Y+C    
Sbjct: 65  KTDEGTYRCEGRI 77

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 129 AFLEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPS 188
           A  +  + P  +      DM V EG +A+  CK +GYP P++ W ++DN     R     
Sbjct: 1   AEEKPHVKPYFTKTIL--DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQID 58

Query: 189 SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             +  +    +   ++V   +   Y C A N +    +    L V 
Sbjct: 59  YDEEGNCSLTI---SEVCGDDDAKYTCKAVNSL-GEATCTAELLVE 100

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 4e-06
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           P  ++ EE      V  G     +C AK   P   + W R  N ++  R+   +      
Sbjct: 1   PIMVTVEEQR-SQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG----- 54

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
               +L++  V  S+ G Y C  +N           LHV
Sbjct: 55  ----ILTIRNVQPSDAGTYVCTGSNMF-AMDQGTATLHV 88

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 29/127 (22%)

Query: 136 PPDI---SSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--------------- 177
           PP I           ++V  G   +L     G P P + W++                  
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 178 ----------KEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK 227
                      + ++       +   + +  + ++    + + G Y     N V      
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPV-GEDQV 122

Query: 228 RLMLHVH 234
            L + V 
Sbjct: 123 NLTVKVI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-05
 Identities = 14/122 (11%), Positives = 31/122 (25%), Gaps = 12/122 (9%)

Query: 16  ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNT--GGSIVFPTDSSAMKVAWIKADT 73
           + + +  G                +S     T +               A        D+
Sbjct: 17  DTIVVVAGNKLRLDV--------PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDS 68

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMAFLE 132
              +   + +     R+ V     +     +    +ED G Y   V N     +    ++
Sbjct: 69  DEWVFDKKLLCETEGRVRVETTK-DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

Query: 133 VV 134
           V+
Sbjct: 128 VI 129

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-06
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
           PP + + ++S    + EG +A LVCK++  P        +            S  + F  
Sbjct: 2   PPRVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 196 ESE---VLSLTKVTRSEM-GAYQCIAANGVPPTVSKRLMLHV 233
            S+    L +  +      G Y+C   +    +    + L V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSK-GSDQAIITLRV 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEII---VRSNPPSSQ 190
           +PP   +           G  A L C  + G P  + TW ++               +S 
Sbjct: 1   VPPSKPTVNIPSS--ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHV 233
            V +  +  L    ++ S+ G Y C A NG   P  S  + +  
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 5e-06
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNK----EIIVRSNPPSS 189
           +PP   +        V  G  A L C    G P  + +W ++       +        +S
Sbjct: 1   VPPSKPTISVPSS--VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-PPTVSKRLMLHV 233
                 +S  L    VT  + G Y C A NG      S+   +  
Sbjct: 59  SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 9e-06
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
           D     G   +L C+        + W +   + I    +    +         L +   T
Sbjct: 9   DTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIEGAT 65

Query: 207 RSEMGAYQCIAANG 220
           +++   Y  +   G
Sbjct: 66  KADAAEYSVMTTGG 79

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 15/106 (14%), Positives = 20/106 (18%), Gaps = 35/106 (33%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
            LE+ T   G      C V+                                V W K   
Sbjct: 6   QLEDTTAYCGERVELECEVSE---------------------------DDANVKWFK--- 35

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV 119
                  E +I           +     L I    + D   Y    
Sbjct: 36  -----NGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT 76

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV 195
            P +  +    +++  E     L C  +G         ++D K      N          
Sbjct: 2   YPVLKDQPA--EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY----NWQEHNAALRK 55

Query: 196 ESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           +   L   +   S+ G YQC A        S+ +    
Sbjct: 56  DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           L+V I P            +  G S   +C+  G    K       N E +  +    S 
Sbjct: 1   LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV 52

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
                +S  L++      + G Y+C+            + + + 
Sbjct: 53  VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 96

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 20/103 (19%), Positives = 26/103 (25%), Gaps = 10/103 (9%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           L     P    E   G +    G S  L C                           S  
Sbjct: 1   LAPRRCPAQ--EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKP------AAGSHP 52

Query: 191 KVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             ++     L L  V   + G Y C  A     TV   L++ V
Sbjct: 53  SRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTV--HLLVDV 93

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 93  THNDANTWTLNIRSVRREDRGYYMCQVNTNPMT 125
           T  D+++WTL + +++ +D+G Y C ++    T
Sbjct: 62  TSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPT 94

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 147 DMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS-LTK 204
           +  +  G   +L C  K     P +TW + +    +   +  +S K     S  +     
Sbjct: 12  EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEP 71

Query: 205 VTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
           V  ++ G+Y+C A        S    L+V
Sbjct: 72  VLPNDNGSYRCSANFQSNLIESHSTTLYV 100

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 147 DMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKV 205
            +   EG +  L C +    P  K+T+ +                K FS      S+ + 
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGK------------SKKFSRSDPNFSIPQA 56

Query: 206 TRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
             S  G Y C    G     SK + + V 
Sbjct: 57  NHSHSGDYHCTGNIGYTLYSSKPVTITVQ 85

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 7/99 (7%)

Query: 135 IPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           + P I +      + +  G +  L     G P P  TW   D+         P       
Sbjct: 1   LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA----LAPELLVDAK 54

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             +  +      R++ G Y+    N +         + V
Sbjct: 55  SSTTSIFFPSAKRADSGNYKLKVKNEL-GEDEAIFEVIV 92

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 14/127 (11%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P   +    G +A   C ++                N  G  V    S   +V  +  + 
Sbjct: 8   PGHPIRALVGDEAELPCRIS-------------PGKNATGMEVGWYRSPFSRVVHLYRNG 54

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ-MAFLE 132
           K   A           L           L I++VR  D G Y C    +   ++    L+
Sbjct: 55  KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114

Query: 133 VVIPPDI 139
           V  P   
Sbjct: 115 VEDPFYW 121

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 46  DTHVNTGGSIVFPTDSS--AMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLN 103
             +    G++ F   S+    +V W K   K     +      ++  +  + D  + +L 
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63

Query: 104 IRSVRREDRGYYMCQVNTNPMTKQMAFLEVV 134
           I ++   D   Y  +   N       FL V+
Sbjct: 64  IYNLTSSDEDEYEMES-PNITDTMKFFLYVL 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEI------IVRSNPPSSQKVFSVESE 198
           S  +     G+      +   P  ++ W+++ +K            +   ++      S 
Sbjct: 2   SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 199 VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
            L++  +T S+   Y+  + N    T + +  L+V
Sbjct: 61  SLTIYNLTSSDEDEYEMESPN---ITDTMKFFLYV 92

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSL 202
           D+ VPE  S KL C   G+ +P++ W+        +               +  S  ++ 
Sbjct: 10  DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69

Query: 203 TKVTRSEMGAYQCIAANGVPPTVSK-RLMLHV 233
           + VTR + G Y C+ +        +  + L V
Sbjct: 70  SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 147 DMMVPEGGSAKLVC---KAKGYPTPKITWRRED---NKEIIVRSNPPSSQKVFSVESEVL 200
            + +         C      G P P + W       N+   + +         +V    L
Sbjct: 6   SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65

Query: 201 SLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            L + T    G Y  +AAN      S  +M    
Sbjct: 66  RLNQPTHVNNGNYTLLAANPF-GQASASIMAAFM 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVC---KAKGYPTPKITWRREDNKEIIVRSNPPSS 189
           V  PP + S        + E       C     +G P P + W          +      
Sbjct: 2   VYYPPRVVS--------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 53

Query: 190 QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            +   +    L   K T    G Y  IA N +  T ++ +  H  
Sbjct: 54  YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPL-GTANQTINGHFL 97

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 25/133 (18%)

Query: 11  FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK 70
           F+   +  T+  G D  F   V                                 + W K
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVK-----------------------AEDLLRKPTIKWFK 39

Query: 71  ADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV-NTNPMTKQMA 129
                + +     +              T+ + I   +    G Y C+V   +       
Sbjct: 40  GKWMDLASKAGKHLQLKETFERHSRV-YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSF 98

Query: 130 FLEVVIPPDISSE 142
            LEV      +  
Sbjct: 99  DLEVHESTGTTPN 111

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNP-----PSSQKVFSVESE 198
              V  G     + K K       P I W +    ++  ++        + ++   V + 
Sbjct: 9   GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 68

Query: 199 VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            + + K   +  G Y+C          S    L VH
Sbjct: 69  EMQIIKAKDNFAGNYRCEVTYKD-KFDSCSFDLEVH 103

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 21/107 (19%)

Query: 17  NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV 76
           +VT      A  +C  N        + +                         +      
Sbjct: 3   HVTKEVKEVATLSCGHNVSVEELAQTRIY---------------------WQKEKKMVLT 41

Query: 77  LAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP 123
           +   +  I    +     +  N  ++ I ++R  D G Y C V    
Sbjct: 42  MMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYE 88

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 9/96 (9%)

Query: 147 DMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSN-----PPSSQKVFSVESE 198
           D  V  GGS     +  G      P + W +    ++  +         S  +   V   
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 199 VLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
            L +T    +  G Y+C  +            L VH
Sbjct: 73  ELHITDAQPAFTGGYRCEVSTKD-KFDCSNFNLTVH 107

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 150 VPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSE 209
           V +G   +L  +       ++ W +   +  +   +              L++++ + ++
Sbjct: 18  VSKGHKIRLTVELAD-HDAEVKWLKNGQEIQM---SGSKYIFESIGAKRTLTISQCSLAD 73

Query: 210 MGAYQCIAAN 219
             AYQC+   
Sbjct: 74  DAAYQCVVGG 83

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 8e-04
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 5/73 (6%)

Query: 147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVT 206
            + V  G +A    +    P     W+ +           P  + +   +  +L L    
Sbjct: 10  GVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLT----ASPDCEIIEDGKKHILILHNCQ 64

Query: 207 RSEMGAYQCIAAN 219
               G     AAN
Sbjct: 65  LGMTGEVSFQAAN 77

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 47  THVNTGGSIVFPTDSSAMKVA---WIK-ADTKAVLAIHEHVITNNARLSVTHNDANT--- 99
             V    +++    +  + +    W K   T     I   V  +N   +           
Sbjct: 9   PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68

Query: 100 --WTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV 133
              +L  + +  +D G Y   +      +  A +  
Sbjct: 69  SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 136 PPDISSEETSGDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFS 194
           PP           +V  G S  + C+     P   +T       E +       +     
Sbjct: 1   PPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQ 59

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPP-------TVSKRLMLHV 233
             +   + T         + C+A   +           S   ML +
Sbjct: 60  EATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEI 105

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 52  GGSIVFPTD--SSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRR 109
           G  I            +  ++ +  + L             S          L I+++ R
Sbjct: 10  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 69

Query: 110 EDRGYYMCQVNTN 122
           +D G Y   V + 
Sbjct: 70  DDSGTYNVTVYST 82

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 14  PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT 73
           P E +  A+G  A   C        + + S  D        ++ P D+  +    I    
Sbjct: 10  PEEMIEKAKGETAYLPC--------KFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSG 61

Query: 74  KAVLAIHEHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLE 132
             +   +   +      +     +   ++N+ +++  D G Y C+V   P +  +   L 
Sbjct: 62  DKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121

Query: 133 VVI 135
           V++
Sbjct: 122 VLV 124

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 94  HNDANTWTLNIRSVRREDRGYYMCQVNTNPM 124
                  TL+IR  R  D G Y  ++    +
Sbjct: 77  DPQTKNCTLSIRDARMSDAGRYFFRMEKGNI 107

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 7/102 (6%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK-EIIVRSNPPSSQK 191
           V   P I+  E+             +    KG P P + W                    
Sbjct: 1   VHFAPTITFLESP-----TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 192 VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHV 233
             +     L L   T    G Y  IA N       K++  H 
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEY-GKDEKQISAHF 96

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 5/78 (6%)

Query: 143 ETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLS 201
           E    ++          C          ITW ++D+K                   E L 
Sbjct: 7   EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP----VSTEQASRIHQHKEKLW 62

Query: 202 LTKVTRSEMGAYQCIAAN 219
                  + G Y C+  N
Sbjct: 63  FVPAKVEDSGHYYCVVRN 80

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRS 208
           +V EG    L C              +D +              +  E+  +S+T  T  
Sbjct: 11  VVMEGQPLFLRCHGWRNWDVYKVIYYKDGE-----------ALKYWYENHNISITNATVE 59

Query: 209 EMGAYQCIAANGVPPTVSKRLMLHVH 234
           + G Y C          S+ L + V 
Sbjct: 60  DSGTYYCTGKVWQLDYESEPLNITVI 85

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 134 VIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF 193
           V  P +    T+    V E  S  L C +              +          + +   
Sbjct: 3   VTQPFLQVTNTT----VKELDSVTLTCLSNDIGANIQWLFNSQS-------LQLTERMTL 51

Query: 194 SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH 234
           S  + +L +  + R + G YQC  +N V    S  + L + 
Sbjct: 52  SQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 139 ISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQKVFS 194
           ++   +  ++ +PE    KL C   G+ +P++ W+ +      +         S +   +
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 195 VESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK-RLMLHV 233
                ++   VTR + G Y C+ +     +  + ++ L V
Sbjct: 65  FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQ 190
           L V  PP ISS +         G   ++ C  +  P P           +   ++   + 
Sbjct: 2   LTVNGPPIISSTQ---TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTV 58

Query: 191 KVFSVESEV---LSLTKVTRS-EMGAYQCIAANGVPPTVSKRLMLHV 233
           +  S E  V   L+++ + R+     Y C A N    + ++ + L  
Sbjct: 59  ETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF-GSDTEIIRLKE 104

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 95  NDANTWTLNIRSVRREDRGYYMCQVNTNP 123
                 ++ I ++   D G + C V   P
Sbjct: 76  PSWKDGSIVIHNLDYSDNGTFTCDVKNPP 104

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 148 MMVPEGGSAKLVCKAKGYPTPKITWRREDN--------KEIIVRSNPPSSQKVFSVESEV 199
           M V  G   +L+C   G  +    W+   +              S    + K  S    V
Sbjct: 12  MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 71

Query: 200 LSLTKVTRSEMGA-YQCIAANGV 221
           L+++++        + C A N  
Sbjct: 72  LNISEIESRFYKHPFTCFAKNTH 94

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQK 191
           ++  P  + E+T       EG   +L C        P ITW++  +            ++
Sbjct: 2   LIASPAKTHEKT-----PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 56

Query: 192 VFSVESEVLSLTKVTRSEMGA---YQCIAANGVPPTVSKRLMLHVH 234
           + +     L  T VT+ ++     Y C A N     V + ++L  +
Sbjct: 57  ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN---AAVDEEVVLVEY 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.65
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.65
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.63
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.61
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.61
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.58
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.58
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.57
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.57
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.57
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.56
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d2avga1	110	Cardiac myosin binding protein C, different domain	99.54
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.54
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.54
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.53
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.53
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.53
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.52
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.52
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.51
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.51
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.51
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.5
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.5
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.49
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.49
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.49
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.48
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.48
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.47
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.46
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.46
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.46
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.45
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.45
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.44
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.43
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.42
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.4
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.4
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.4
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.39
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.38
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.38
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.38
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.38
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.37
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.37
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.36
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.35
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.34
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.31
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.29
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.28
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.28
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.27
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.26
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.25
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.25
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.24
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.24
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.23
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	99.19
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.17
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.15
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.14
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.14
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.13
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.13
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.11
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.11
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.11
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.1
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	99.1
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.09
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	99.09
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	99.08
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.07
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	99.06
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	99.06
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.05
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.05
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	99.05
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.03
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.03
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	99.03
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	99.03
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	99.03
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	99.02
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.02
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.02
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	99.01
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	99.01
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	99.01
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.0
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	99.0
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	99.0
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.99
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.98
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.97
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.97
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.96
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.95
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.95
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.95
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.95
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.94
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.94
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.94
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.94
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.93
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.93
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.93
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.93
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.93
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.92
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.92
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.92
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.91
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.9
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.89
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.89
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.88
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.87
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.87
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.87
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.86
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.85
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.85
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.84
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.84
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.84
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.84
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.83
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.81
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.81
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.81
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.8
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.8
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.8
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.79
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.79
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.79
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.78
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.78
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.77
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.77
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.77
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.75
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.74
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.72
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.71
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.68
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.68
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.67
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.65
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.65
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.65
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.65
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.64
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.63
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.63
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.61
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.6
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.6
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.59
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.59
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.58
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.58
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.58
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.57
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.57
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.56
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.56
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.55
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.55
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.55
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.54
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.54
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.53
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.53
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.52
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.52
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.52
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.51
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.51
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.51
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.5
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.5
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.49
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.49
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.49
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.49
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.48
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.48
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.48
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.47
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.47
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.47
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.47
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.47
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.47
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.47
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.46
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.46
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.46
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.46
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.46
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.46
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.45
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.44
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.43
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.43
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.43
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.43
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.43
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.42
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.42
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.41
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.41
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.41
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	98.4
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.4
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.37
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.37
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.36
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.36
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.34
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	98.34
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.34
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	98.33
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.32
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.31
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.29
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.28
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.27
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.27
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.27
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.26
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.25
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	98.22
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.22
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.21
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.21
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.21
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.2
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.2
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.19
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.17
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.15
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.14
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.14
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.14
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.11
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	98.1
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.07
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.07
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.06
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.06
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.05
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.05
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.04
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.04
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.03
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.03
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.03
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.01
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.0
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.99
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.99
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.99
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.98
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.98
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.98
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.97
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.97
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.97
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.95
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.94
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.94
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.93
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.93
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.93
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.93
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.92
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.91
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.9
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.9
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.89
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.88
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.88
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.88
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.87
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.87
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.85
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.85
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.85
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.84
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.84
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.84
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.83
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.83
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.82
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.81
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.8
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.8
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.8
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.79
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.79
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.78
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.77
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.77
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.76
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.76
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.76
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.74
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.73
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.73
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.71
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.71
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.7
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.69
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.68
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.68
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.68
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.67
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.67
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.67
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.64
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.64
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.64
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.64
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.63
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.63
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.63
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.62
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.6
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.6
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.6
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.58
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.58
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.57
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.56
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.55
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.54
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.53
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.53
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.52
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.52
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.52
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.51
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.5
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.49
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.49
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.47
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.47
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.47
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.46
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.45
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.44
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.43
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.43
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.42
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.42
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.42
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.42
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.41
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.4
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.39
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.39
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.38
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.37
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.36
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.34
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.33
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.33
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.32
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.29
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.29
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.28
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.27
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.25
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.25
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.24
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.22
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.22
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.19
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.15
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.11
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.1
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.09
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.09
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.09
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.06
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.04
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.03
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.03
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.02
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.01
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.0
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.0
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.99
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.98
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.97
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.95
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.94
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.93

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.65  E-value=8.3e-16  Score=95.98  Aligned_cols=93  Identities=22%  Similarity=0.382  Sum_probs=72.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.++.+.+|+++.|.|.+..                          .|.|.+.|++++..+.         .
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g--------------------------~P~p~v~W~k~~~~i~---------~   51 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEG--------------------------YPDPEVMWFKDDNPVK---------E   51 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE--------------------------ESCCEEEEEETTEECC---------C
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEe--------------------------ccCCeEEEEeeecccc---------c
Confidence            4789999999999999999999999963                          4577899999876643         3


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      +.++.+........+|.|.+++.+|.|.|+|.+.|.. .....+.|.|.
T Consensus        52 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          52 SRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             SSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEE
Confidence            4556655555566799999999999999999998864 34445556654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.65  E-value=3.5e-16  Score=95.04  Aligned_cols=82  Identities=26%  Similarity=0.471  Sum_probs=66.1

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .+.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+...      .. ....++.|.|.++..+|.|.|+|.|.|..|.
T Consensus         7 ~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~g~~i~~~------~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (89)
T d1cs6a4           7 VITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQ------NR-IEVSGGELRFSKLVLEDSGMYQCVAENKHGT   78 (89)
T ss_dssp             CCCCEEEETTCCEEEECEEEEESCCEEEEEE-TTEECCCC------SS-EEEETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ECCCEEECCCCcEEEEEEEEEEcCCEEEEEE-eecccccc------ce-eeeeeeeEEEEeecccCCEEEEEEEEeCCCE
Confidence            3456778899999999999999999999999 56555321      11 2335668999999999999999999999995


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                      . +.++.|.|+
T Consensus        79 ~-~~~~~l~V~   88 (89)
T d1cs6a4          79 V-YASAELTVQ   88 (89)
T ss_dssp             E-EEEEEEEEE
T ss_pred             E-EEEEEEEEE
Confidence            4 677888885

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=6.9e-16  Score=93.69  Aligned_cols=87  Identities=23%  Similarity=0.424  Sum_probs=67.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|+..+.+..+..|+++.|.|.+.                          +.|.|.++|++++..+.         ..
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~---------~~   45 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVAS--------------------------GKPRPAVRWLRDGQPLA---------SQ   45 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEE--------------------------EESCCEEEEEETTEECC---------CC
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEE--------------------------EEcCCEEEEEEeecccc---------cc
Confidence            48899999999999999999999995                          34577899999876543         23


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      .++.+...     +|.|.+++.+|+|.|+|.+.|..+ ....+.|.|.
T Consensus        46 ~~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          46 NRIEVSGG-----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             SSEEEETT-----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceeeeeee-----eEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            44544332     899999999999999999988643 3445556654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.8e-16  Score=98.69  Aligned_cols=86  Identities=28%  Similarity=0.569  Sum_probs=64.5

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ...+..|+.+.|.|.+.|.|.|.+.|++ ++..+...... ..........+.|.|.++..+|.|.|+|.|.|..|. .+
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~   90 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEED-DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QD   90 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECCCC--C-CSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEe-CCccccccccc-ceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCE-EE
Confidence            3456789999999999999999999999 55554322211 111122233458999999999999999999999995 47


Q ss_pred             ceEEEEEEe
Q psy7941         227 KRLMLHVHC  235 (238)
Q Consensus       227 ~~~~l~V~~  235 (238)
                      ..+.|.|..
T Consensus        91 ~~~~l~V~~   99 (100)
T d1qz1a3          91 ASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEE
Confidence            888888864

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-15  Score=93.46  Aligned_cols=95  Identities=21%  Similarity=0.313  Sum_probs=72.8

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCc
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNA   88 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |.|...++.+.+.+|+++.|.|.+.                          +.|.+.+.|++++..+.         ...
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~k~~~~l~---------~~~   45 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVT--------------------------GTQPITCTWMKFRKQIQ---------ESE   45 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEE--------------------------SSSSCEEEEEESSSBCC---------CSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEE--------------------------ecCCCEEEEEeCceeec---------cCC
Confidence            6788889999999999999999985                          34577899999877643         244


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCCcc
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPPDI  139 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~~~  139 (238)
                      ++.+... ....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|...|..
T Consensus        46 ~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~p   96 (101)
T d2cqva1          46 HMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP   96 (101)
T ss_dssp             SEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSC
T ss_pred             cEEEEEe-cceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCC
Confidence            5554443 334589999999999999999998863 4455667888766643

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=1.7e-15  Score=93.82  Aligned_cols=93  Identities=27%  Similarity=0.306  Sum_probs=70.6

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|...+.++.+.+|+++.|.|.+.                          +.|.|.+.|++++..+..         
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~--------------------------g~P~p~v~W~k~~~~i~~---------   47 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVV--------------------------GKPDPECEWYKNGVKIER---------   47 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCC---------
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEE--------------------------EecCCeEEEEeCceEEee---------
Confidence            478999999999999999999999985                          345778999998766432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      ..++.......+..+|.|.+++.+|.|.|+|.+.|.. .....+.|.|.
T Consensus        48 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          48 SDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence            3333333333455689999999999999999998864 34445666665

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.6e-16  Score=92.76  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++....              .....|.|.++..+|+|.|+|.|.|..| ....
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--------------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g-~~~~   73 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------QGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEF   73 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--------------EESSEEEESSCCGGGCEEEEEEEEETTE-EEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccce--------------eeeeeeeeeecccccccEEEEEEEeCCC-EEEE
Confidence            457889999999999999999999999554322              2344689999999999999999999999 4478


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      .+.|.|...|
T Consensus        74 ~~~v~V~~~~   83 (84)
T d2nxyb2          74 KIDIVVLAFQ   83 (84)
T ss_dssp             EEEECEECCC
T ss_pred             EEEEEEEecC
Confidence            8888887654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=6.1e-16  Score=94.45  Aligned_cols=79  Identities=25%  Similarity=0.432  Sum_probs=63.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++++....          .....++.|.|.++..+|.|.|+|.|.|..|..
T Consensus        12 p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~----------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS----------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD   81 (91)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC----------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce----------EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEE
Confidence            4557788999999999999999999999995543221          112345579999999999999999999999954


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       +.++.|.|+
T Consensus        82 -~~~~~l~V~   90 (91)
T d1cs6a3          82 -TYQGRIIIH   90 (91)
T ss_dssp             -EEEEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             778888886

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=95.28  Aligned_cols=88  Identities=20%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+..|+.+.|.|.+.|.|.+.+.|++ ++..+....   ............|.|.++..+|+|.|+|.|.|..|. 
T Consensus         7 p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~~~~l~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-   81 (101)
T d2cqva1           7 PEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESE---HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-   81 (101)
T ss_dssp             CCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSS---SEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE-
T ss_pred             CCcEEEeCCCcEEEEEEEEecCCCEEEEEe-CceeeccCC---cEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE-
Confidence            455778899999999999999999999999 444442211   101111222347999999999999999999999995 


Q ss_pred             ccceEEEEEEeec
Q psy7941         225 VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ~~~~~~l~V~~~p  237 (238)
                      .+.++.|.|..+|
T Consensus        82 ~~~~~~l~V~~~P   94 (101)
T d2cqva1          82 RQAQVNLTVVDKP   94 (101)
T ss_dssp             EECCEEEEEECSC
T ss_pred             EEEEEEEEEEecC
Confidence            4888899998765

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=90.79  Aligned_cols=77  Identities=25%  Similarity=0.386  Sum_probs=61.4

Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +.+..+.+|+.+.|.|.+.|.|.| ++.|++ ++..+...            ..+.+.|.....+|+|.|+|.|.|..|.
T Consensus         8 P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k-~g~~i~~~------------~~~~~~l~~~~~~d~G~Y~C~A~N~~G~   74 (85)
T d1rhfa2           8 PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGP------------APSPSVLNVTGVTQSTMFSCEAHNLKGL   74 (85)
T ss_dssp             CCCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEECSCS------------EESSEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCcEEEcCCCEEEEEEEEecCCcceEEEEEE-CCEECCCC------------CCcceEEecCCccccEEEEEEEEcCCCc
Confidence            456778899999999999999988 899999 55544211            1234667777888999999999999997


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                      ..++.+.|.|+
T Consensus        75 ~~S~~~~v~Vk   85 (85)
T d1rhfa2          75 ASSRTATVHLQ   85 (85)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            76788888774

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.61  E-value=1.2e-15  Score=92.59  Aligned_cols=78  Identities=23%  Similarity=0.468  Sum_probs=62.4

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..       .. ....+..|.|.++..+|+|.|+|.|.|..|.. .
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~i~~-------~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~   81 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSG-------GR-ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-Y   81 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEE-TTEECCS-------SS-EEEETTEEEESSCCSTTCEEEEEEEEETTEEE-E
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEe-CCccCcc-------cc-EEEeeeeEEECCCChhhCEEEEEEEEECCCEE-E
Confidence            3567899999999999999999999999 5555421       11 22345579999999999999999999999944 7


Q ss_pred             ceEEEEEE
Q psy7941         227 KRLMLHVH  234 (238)
Q Consensus       227 ~~~~l~V~  234 (238)
                      ..+.|.|+
T Consensus        82 ~~~~l~V~   89 (89)
T d1biha4          82 FETLVQVN   89 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            77777764

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-16  Score=95.85  Aligned_cols=82  Identities=22%  Similarity=0.407  Sum_probs=62.6

Q ss_pred             CcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEE
Q psy7941         137 PDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       137 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      |.+.....+....+.+|+.+.|.|.+.|.|.|.++|++++. .+..                .+.+..++.+|+|.|.|.
T Consensus         3 P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~-~~~~----------------~~~~~~v~~~d~G~Y~C~   65 (84)
T d2oz4a3           3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT-FPLP----------------IGESVTVTRDLEGTYLCR   65 (84)
T ss_dssp             EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT-EECC----------------TTSCEECCGGGCEEEEEE
T ss_pred             CceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeec-ccee----------------eeeeeccccCCCCEEEEE
Confidence            33333334566788999999999999999999999999543 3221                122456788999999999


Q ss_pred             eeeCCCCCccceEEEEEEee
Q psy7941         217 AANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       217 ~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |.|..|+ .++.+.|.|..|
T Consensus        66 A~N~~G~-~~~~~~l~V~~P   84 (84)
T d2oz4a3          66 ARSTQGE-VTREVTVNVLSP   84 (84)
T ss_dssp             EEETTEE-EEEEEEEEEECC
T ss_pred             EEcCCCE-EEEEEEEEEECC
Confidence            9999995 488899999764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.4e-15  Score=93.97  Aligned_cols=92  Identities=25%  Similarity=0.446  Sum_probs=69.0

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|+..+.++.+.+|+++.|.|.+.                          +.|.+.+.|++++..+..         +
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~l~~---------~   45 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVI--------------------------ASSPPVVTWHKDDRELKQ---------S   45 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCS---------B
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEE--------------------------EcCCCEEEEEEeeeccce---------e
Confidence            48999999999999999999999995                          345778999998765432         2


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEc
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVI  135 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~  135 (238)
                      .++.+.. .....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|..
T Consensus        46 ~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          46 VKYMKRY-NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             TTBBCCC-STTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEEC
T ss_pred             eEEEEEe-cCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEee
Confidence            3333322 2345589999999999999999998863 344455566654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=4.4e-15  Score=91.00  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=68.0

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.|..++..+.+..|+++.|.|.+.                          +.|.|.+.|++++..+..         
T Consensus         1 l~P~i~~~~~~~~v~~G~~~~l~c~~~--------------------------g~P~p~v~W~~~~~~i~~---------   45 (93)
T d1wiua_           1 LKPKILTASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAAL---------   45 (93)
T ss_dssp             CCCEECCCCCEEEECSSBCCEEEEEEE--------------------------CCSSCEEEEECSSSSCBC---------
T ss_pred             CCCeEEeCCCcEEEeCCCeEEEEEEEE--------------------------EecCCeEEEEeeeeecee---------
Confidence            378999999999999999999999995                          456788999998765432         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      +.++..... ....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|
T Consensus        46 ~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          46 APELLVDAK-SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             STTSEEEEE-TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeeeeeccc-ccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            334433332 2344899999999999999999988643 333334443

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=1.5e-15  Score=93.79  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=65.1

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      .+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+........ ..........|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k-~g~~i~~~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNPEDRI-TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEE-TTEECCCCTTSSE-ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEE-eeeeccccceeee-eeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            45778899999999999999999999999 5554432211000 001112334799999999999999999999999766


Q ss_pred             cceEEEEEE
Q psy7941         226 SKRLMLHVH  234 (238)
Q Consensus       226 ~~~~~l~V~  234 (238)
                      +.++.|.|.
T Consensus        89 s~s~~L~Vl   97 (97)
T d1biha3          89 KHSLKLTVV   97 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            778888873

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3e-15  Score=91.00  Aligned_cols=80  Identities=24%  Similarity=0.414  Sum_probs=62.8

Q ss_pred             CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++.....        .. ....++.|.|.++..+|+|.|+|.|.|..|.
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~--------~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--------SR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--------TT-EEEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec--------cc-cEeeceEEEEecCCcccCEEEEEEEEECCCE
Confidence            4456788999999999996 588899999995433221        11 2334568999999999999999999999994


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                       .+.+++|.|+
T Consensus        80 -~~~~~~l~V~   89 (89)
T d1gl4b_          80 -DQGTATLHVQ   89 (89)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -EEEEEEEEEC
Confidence             4778888774

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.2e-15  Score=91.73  Aligned_cols=79  Identities=18%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++++.....       ........+.|.|.++..+|.|.|+|.|.|..| ..++
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g-~~~~   82 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG-------KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEK   82 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS-------EEEEETTEEEEEESSCCGGGCSEEEEEEEETTE-EEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceee-------eeeeecCCcEEEEecccccccceEEEEEEeCCC-EEEE
Confidence            45678999999999999999999999855433211       111223345799999999999999999999999 4588


Q ss_pred             eEEEEEE
Q psy7941         228 RLMLHVH  234 (238)
Q Consensus       228 ~~~l~V~  234 (238)
                      ++.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888886

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=93.33  Aligned_cols=85  Identities=27%  Similarity=0.442  Sum_probs=64.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE---EEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF---SVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....    ....   ......|.|.++..+|+|.|+|.|.|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~g~~l~~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   77 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQ----LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGG   77 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSEE----EEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCT
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEE-eeccccccee----eeeeecccCceeeEEECCCCcccCEEEEEEEEECC
Confidence            455778899999999999999999999999 5554432110    0111   1122368999999999999999999999


Q ss_pred             CCCccceEEEEEE
Q psy7941         222 PPTVSKRLMLHVH  234 (238)
Q Consensus       222 g~~~~~~~~l~V~  234 (238)
                      |...++.+.|.|.
T Consensus        78 G~~~S~~~~l~V~   90 (91)
T d1rhfa1          78 ETEISQPVWLTVE   90 (91)
T ss_dssp             TCEECCCEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9766888988885

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.57  E-value=8.5e-16  Score=93.83  Aligned_cols=85  Identities=24%  Similarity=0.450  Sum_probs=65.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....   ............|.|.++..+|+|.|+|.|.|..|..
T Consensus         6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-g~~l~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRK-GQVLSTSA---RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CCCEECSSSSCCCEEEECCCSSCCCCEEESS-SSTTCSSS---SCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             CcCEEEeCCCcEEEEEEEEEEeCCeEEEEEe-eccccccc---ceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            4567899999999999999999999999994 44443211   1111222334579999999999999999999999954


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       +.++.|.|+
T Consensus        82 -~~~~~l~V~   90 (91)
T d1tnna_          82 -EAEFTLTIQ   90 (91)
T ss_dssp             -CEEEEEECC
T ss_pred             -EEEEEEEEE
Confidence             777888775

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.57  E-value=3.5e-15  Score=92.12  Aligned_cols=82  Identities=24%  Similarity=0.449  Sum_probs=63.6

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+..|+.+.|.|.+.|.|.|.+.|++ ++..+.....  ............|.|.++..+|+|.|+|.|.|..|. .+.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~k-ng~~l~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~   90 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHR--IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INH   90 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEE-TTEECCGGGS--TTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEE-CCEeccccCc--eeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEE
Confidence            457889999999999999999999999 6655543221  111222234468999999999999999999999995 478


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ++.|.|
T Consensus        91 ~~~l~V   96 (97)
T d3dara1          91 TYHLDV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888877

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=2e-15  Score=92.53  Aligned_cols=85  Identities=15%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ...+.+..|+.+.|.|.+.|.|.|.+.|+++ +..+....   ............|.|.++..+|+|.|+|.|.|..|..
T Consensus         9 ~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~-~~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   84 (93)
T d1wiua_           9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAP---ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED   84 (93)
T ss_dssp             CCEEEECSSBCCEEEEEEECCSSCEEEEECS-SSSCBCST---TSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE
T ss_pred             CCcEEEeCCCeEEEEEEEEEecCCeEEEEee-eeeceeee---eeeecccccceeeccccccccccEEEEEEEEECCCEE
Confidence            4567899999999999999999999999994 44332211   1111122233479999999999999999999999954


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       +.++.|.|+
T Consensus        85 -~~~~~l~V~   93 (93)
T d1wiua_          85 -EAIFEVIVQ   93 (93)
T ss_dssp             -EEEEEEEEC
T ss_pred             -EEEEEEEEC
Confidence             777877774

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.5e-15  Score=92.68  Aligned_cols=84  Identities=21%  Similarity=0.384  Sum_probs=66.4

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ...+.+|+.+.|.|.+.+ +.+.+.|++ ++..+....     ........+.|.|.++..+|.|.|+|.|.|..|...+
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~-~~~~l~~~~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLF-NSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEE-TTEECCCCT-----TEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEEC
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEE-eeeeccccc-----ceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEE
Confidence            456889999999999866 557999999 555543221     2223334568999999999999999999999997767


Q ss_pred             ceEEEEEEeec
Q psy7941         227 KRLMLHVHCTY  237 (238)
Q Consensus       227 ~~~~l~V~~~p  237 (238)
                      ..+.|.|.++|
T Consensus        85 ~~~~L~V~~~P   95 (96)
T d1l6za2          85 NSIKLDIIFDP   95 (96)
T ss_dssp             CCCEEEECCSC
T ss_pred             EeEEEEEEcCC
Confidence            88999999988

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=1.1e-15  Score=94.44  Aligned_cols=87  Identities=23%  Similarity=0.378  Sum_probs=65.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+......   ..........|.|.++..+|.|.|+|.|.|..|..
T Consensus         8 p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   83 (97)
T d1koaa1           8 PYGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSVKY---MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK   83 (97)
T ss_dssp             CCCCEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCSBTTB---BCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEE
T ss_pred             CCCEEEeCCCcEEEEEEEEEcCCCEEEEEE-eeeccceeeEE---EEEecCCeeEEEeCCCceecCEEEEEEEEECCCEE
Confidence            445678899999999999999999999999 55555322110   11111223369999999999999999999999954


Q ss_pred             ccceEEEEEEee
Q psy7941         225 VSKRLMLHVHCT  236 (238)
Q Consensus       225 ~~~~~~l~V~~~  236 (238)
                       +.++.|.|...
T Consensus        84 -~~~~~l~V~~~   94 (97)
T d1koaa1          84 -EEIVFLNVTRH   94 (97)
T ss_dssp             -EEEECCEEECS
T ss_pred             -EEEEEEEEeec
Confidence             77788888653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=7.4e-15  Score=90.68  Aligned_cols=88  Identities=14%  Similarity=0.279  Sum_probs=63.7

Q ss_pred             CceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ....+..|+.+.|.|.+.|.|. +.+.|+++++..+..... .............|.|.++..+|+|.|+|.|.|..|..
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ-RISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSS-SEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccc-cEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            4466889999999999999875 799999966654432211 00000011123479999999999999999999999965


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      .++++.|.|.
T Consensus        87 ~~~tv~l~V~   96 (97)
T d1epfa1          87 SEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5677888875

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=7.4e-15  Score=89.08  Aligned_cols=85  Identities=25%  Similarity=0.466  Sum_probs=62.5

Q ss_pred             ccceeccC-ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPL-ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~-~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .|.|...+ ..+.+.+|+++.|.|.+.                          +.|.|.++|++++..+.          
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~i~----------   45 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVT--------------------------GLPAPNVVWSHNAKPLS----------   45 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEE--------------------------EESCCCCEEEETTEECC----------
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEE--------------------------EeCCCEEEEEeCCccCc----------
Confidence            58888665 456789999999999995                          34577899999876542          


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      ..++.....     .|.|.+++.+|+|.|+|.+.|..+ ....+.|.|
T Consensus        46 ~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          46 GGRATVTDS-----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             SSSEEEETT-----EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccEEEeee-----eEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            334544433     799999999999999999988643 333444443

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=89.81  Aligned_cols=85  Identities=21%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEe--eceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVE--SEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....    ........  ...|.|.++..+|.|.|+|.|.|..|
T Consensus        11 ~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k-~~~~i~~~~----~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   85 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKIERSD----RIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG   85 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCCS----SEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEcCCCcEEEEEEEEEecCCeEEEEe-CceEEeeee----eeEEEeccceEEEEEeccCccccCEEEEEEEEECCc
Confidence            445678899999999999999999999999 555553221    11111112  23799999999999999999999999


Q ss_pred             CCccceEEEEEEe
Q psy7941         223 PTVSKRLMLHVHC  235 (238)
Q Consensus       223 ~~~~~~~~l~V~~  235 (238)
                      .. +.++.|.|+.
T Consensus        86 ~~-~~~~~L~V~~   97 (98)
T d1g1ca_          86 ET-SSHAFLLVQA   97 (98)
T ss_dssp             EE-EEEEEEEEEC
T ss_pred             EE-EEEEEEEEEE
Confidence            54 7778888864

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=7.2e-14  Score=86.14  Aligned_cols=91  Identities=23%  Similarity=0.393  Sum_probs=64.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...|..+.+..|+++.|.|.+.+.+                         +.+.+.|+++++....       ....++
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p-------------------------~~~~v~W~~~~g~~~~-------~~~~~~   50 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDA-------------------------KDKDISWFSPNGEKLS-------PNQQRI   50 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCS-------------------------CCCEEEEECTTSCEEC-------CBSSSE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEecc-------------------------CCCEEEEEEeeeeeee-------eccccE
Confidence            44567788899999999999985321                         1357999997655332       124456


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcce--eeEEEE
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQ--MAFLEV  133 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v  133 (238)
                      ..........+|.|.+++.+|+|.|+|.+.|..+...  .+.|+|
T Consensus        51 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          51 SVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             EEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence            5555555566999999999999999999988654333  344444

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.55  E-value=6.2e-15  Score=89.10  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=61.5

Q ss_pred             eeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|++ ++..+...           ..+..|.|.++..+|+|.|+|.|.|..|...+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k-~g~~~~~~-----------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQ-NGKSKKFS-----------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEE-TTEEEEEE-----------SSCCEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEe-eccccccc-----------ccccccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            34778999999999965 5667999999 55544321           23447899999999999999999999986657


Q ss_pred             ceEEEEEEee
Q psy7941         227 KRLMLHVHCT  236 (238)
Q Consensus       227 ~~~~l~V~~~  236 (238)
                      ..+.|.|+.|
T Consensus        78 ~~v~l~V~~P   87 (88)
T d2fcba2          78 KPVTITVQAP   87 (88)
T ss_dssp             CCEEEEECCC
T ss_pred             eeEEEEEeCC
Confidence            8899999875

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.5e-15  Score=91.17  Aligned_cols=84  Identities=17%  Similarity=0.387  Sum_probs=62.1

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....    ........++.|.|.++..+|+|.|+|.|.|..| 
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~-~~~i~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-   80 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK-GRDVILKK----DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR-   80 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEET-TEEGGGGC----CTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG-
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEc-Cccccccc----ceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC-
Confidence            45667889999999999999999999999994 44333221    1223334455799999999999999999999876 


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            3244444444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.4e-15  Score=93.38  Aligned_cols=93  Identities=19%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             ccCCceeecCCCcEEEEEEEcccc---CCeEEEEeCCCeeeEeecCCCCCcceE------EEeeceEEEEEeecCCCeEE
Q psy7941         143 ETSGDMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPPSSQKVF------SVESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       143 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~y  213 (238)
                      ..+..+.+.+|+.+.|.|.+.|.|   .|.+.|++++............ ....      ......|.|.++..+|+|.|
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL-QLKETFERHSRVYTFEMQIIKAKDNFAGNY   83 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSE-EEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceee-eeccceeeEeecCEEEEEEccCCHHHCeEE
Confidence            445667899999999999999988   5799999954322211110000 0000      11123699999999999999


Q ss_pred             EEEeeeCCCCCccceEEEEEEeec
Q psy7941         214 QCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       214 ~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      +|.|.|..|.. +.++.|.|..+|
T Consensus        84 ~C~a~N~~G~~-~~~~~L~V~~~~  106 (113)
T d2dava1          84 RCEVTYKDKFD-SCSFDLEVHEST  106 (113)
T ss_dssp             EEEEECSSCEE-EECCEEEEECCC
T ss_pred             EEEEEeCCCEE-EEEEEEEEEcCC
Confidence            99999999954 888889997654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=91.90  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             cccCCceeecCCCcEEEEEEEcccc---CCeEEEEeCCCeeeEeecCCCCCcceE------EEeeceEEEEEeecCCCeE
Q psy7941         142 EETSGDMMVPEGGSAKLVCKAKGYP---TPKITWRREDNKEIIVRSNPPSSQKVF------SVESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       142 ~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~  212 (238)
                      ...+....+..|+++.|.|.+.|.|   .|.+.|++++...+........ ....      ......|.|.+++..|+|.
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   86 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHL-QLHDSYDRASKVYLFELHITDAQPAFTGG   86 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSE-EEEEEEETTTTEEEEEEEEESCCTTCCEE
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCcee-EeeeeeEEecccCEEEEEEeccCHHHCcE
Confidence            3446668899999999999999988   5789999854322211100000 0000      1122469999999999999


Q ss_pred             EEEEeeeCCCCCccceEEEEEEee
Q psy7941         213 YQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       213 y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      |+|.|.|..|.. +.++.|.|+.+
T Consensus        87 Y~C~a~N~~G~~-~~~~~L~V~~~  109 (110)
T d2avga1          87 YRCEVSTKDKFD-CSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEESC
T ss_pred             EEEEEEECCCeE-EEEEEEEEEec
Confidence            999999999955 88899988753

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.54  E-value=1.8e-14  Score=89.79  Aligned_cols=84  Identities=26%  Similarity=0.464  Sum_probs=64.4

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....    .....  .....|.|.++..+|.|.|+|.|.|..|
T Consensus        15 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k-~~~~i~~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   89 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRH----FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG   89 (102)
T ss_dssp             CCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSS----EEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEecCCcEEEEEEEEeccCCeEEEEe-eeccccceee----EeEEEecCceeeeEecCCCHHhCEEEEEEEEECCc
Confidence            455778899999999999999999999999 5555432211    11111  1134799999999999999999999999


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                      .. +.++.|.|+
T Consensus        90 ~~-~~~~~L~V~  100 (102)
T d1fhga_          90 EA-TCTAELLVE  100 (102)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             EE-EEEEEEEEE
Confidence            44 778888886

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=87.71  Aligned_cols=79  Identities=22%  Similarity=0.297  Sum_probs=61.8

Q ss_pred             CceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ....+..|+++.|.|.+. |.|.|.+.|++.+....         ........+.|.|.++..+|+|.|+|.|.|..| .
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---------~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g-~   80 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---------AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR-T   80 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---------CEEEESSEEEEEECSCCGGGCEEEEEEEEETTE-E
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---------eeeccCceeeEEcCccChhhCCcEEEEEEeCCC-c
Confidence            346688999999999885 78999999998544321         111223345799999999999999999999998 4


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                      .++++.|.|+
T Consensus        81 ~~~s~~l~Vy   90 (90)
T d1gsma1          81 FQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            5888888874

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=5.8e-15  Score=90.68  Aligned_cols=84  Identities=19%  Similarity=0.378  Sum_probs=63.7

Q ss_pred             cCCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..+.+.+|+.+.|.|.+.|.|.| .+.|++ ++..+...    ..........+.|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~-~g~~l~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQ----EHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTT----TTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEe-eeeeeeee----cceeeecccceEEEEeccChhcCeEEEEEEEeCCC
Confidence            3556788999999999999998876 799999 55544321    11222333456899999999999999999999999


Q ss_pred             CCccceEEEE
Q psy7941         223 PTVSKRLMLH  232 (238)
Q Consensus       223 ~~~~~~~~l~  232 (238)
                      ...++.+.|.
T Consensus        83 ~~~s~~v~l~   92 (94)
T d1biha1          83 VASSRVISFR   92 (94)
T ss_dssp             EEECCCEEEE
T ss_pred             EEEEEEEEEE
Confidence            7666776654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.2e-15  Score=91.69  Aligned_cols=88  Identities=19%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             cCCceeecCCCcEEEEEEEcccc-CCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEee
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYP-TPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAA  218 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~  218 (238)
                      .+....+..|+.+.|.|.+.|.| .|.++|++++.........   .......    ....|.|.++..+|.|.|+|.|.
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLED---RQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCS---SCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccce---eeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            34556788999999999999988 5899999955443332211   1111111    12259999999999999999999


Q ss_pred             eCCCCCccceEEEEEE
Q psy7941         219 NGVPPTVSKRLMLHVH  234 (238)
Q Consensus       219 n~~g~~~~~~~~l~V~  234 (238)
                      |..|...++++.|.|.
T Consensus        86 N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          86 FQSNLIESHSTTLYVT  101 (104)
T ss_dssp             ETTEEEECCCEEEEEE
T ss_pred             cCCCeEEEEEEEEEEE
Confidence            9999655678888775

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=9.7e-15  Score=89.01  Aligned_cols=88  Identities=24%  Similarity=0.362  Sum_probs=64.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      +|+..|.++.+.+|+++.|.|.+.                          +.|.|.+.|++++..+..         ..+
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~~~g~~l~~---------~~~   45 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTD--------------------------GEPVPTVTWLRKGQVLST---------SAR   45 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECC--------------------------CSSCCCCEEESSSSTTCS---------SSS
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEE--------------------------EEeCCeEEEEEeeccccc---------ccc
Confidence            366788899999999999999985                          455778999998765432         233


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEE
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEV  133 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v  133 (238)
                      +.+... ....+|.|.+++.+|+|.|.|.+.|.. .....+.|.|
T Consensus        46 ~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          46 HQVTTT-KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI   89 (91)
T ss_dssp             CEEEEC-SSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEEC
T ss_pred             eeeeee-cceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEE
Confidence            333332 234589999999999999999998753 3344444544

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=86.71  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             eeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|++ ++..+..           ...+..|.|.++..+|+|.|+|.|.|..|...+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k-ng~~~~~-----------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRKY-----------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEE-TTEEEEE-----------EEECCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEE-cccccce-----------eccccccEECccceeccceEEEEEEeCCCCeEE
Confidence            34778999999999864 5666999999 5554432           234457899999999999999999999986667


Q ss_pred             ceEEEEEEe
Q psy7941         227 KRLMLHVHC  235 (238)
Q Consensus       227 ~~~~l~V~~  235 (238)
                      ..+.|.|.+
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            889998875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.5e-14  Score=84.81  Aligned_cols=86  Identities=21%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             ccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.+..+ +..+.+.+|+++.|.|.+.                         .+.|.+.++|++.+..+....       
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~-------------------------~g~p~p~v~W~~~~~~~~~~~-------   49 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLA-------------------------CADRGASVQWRGLDTSLGAVQ-------   49 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEEC-------------------------CSSTTCEEEEESSTTTTCCEE-------
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEec-------------------------CCCCccEEEEEEeeeeeeeee-------
Confidence            4545544 4567889999999999974                         245577899999776542110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                              ......+|.|.+++.+|+|.|+|.+.+... ....+.|.|
T Consensus        50 --------~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          50 --------SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             --------EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             --------ccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence                    012233899999999999999999987643 333444544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=88.15  Aligned_cols=78  Identities=22%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             eeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCcc
Q psy7941         148 MMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVS  226 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~  226 (238)
                      ..+.+|+.+.|.|.+.+. |...+.|++ ++..+..           ......|.|.++..+|+|.|+|.|.|..|...+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k-~g~~~~~-----------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S   77 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKY-----------WYENHNISITNATVEDSGTYYCTGKVWQLDYES   77 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEE-TTEECCS-----------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEE-eeecccc-----------ccccceEEEeeeeeecCcEEEEEEEeCCCCeEe
Confidence            347789999999999775 455999999 5554421           113346899999999999999999999886668


Q ss_pred             ceEEEEEEeec
Q psy7941         227 KRLMLHVHCTY  237 (238)
Q Consensus       227 ~~~~l~V~~~p  237 (238)
                      ..+.|.|..+|
T Consensus        78 ~~v~i~V~~~P   88 (89)
T d1f2qa2          78 EPLNITVIKAP   88 (89)
T ss_dssp             CCEEEEEECSC
T ss_pred             eeEEEEEEeCC
Confidence            89999999987

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.6e-14  Score=88.15  Aligned_cols=89  Identities=22%  Similarity=0.354  Sum_probs=63.6

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      ++.|...|....+.+|+++.|.|.+.                          +.|.|.++|++++..+....       .
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~~~~~~i~~~~-------~   47 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVV--------------------------SSLPPTIIWKHKGRDVILKK-------D   47 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEE--------------------------CSSCCEEEEEETTEEGGGGC-------C
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEe--------------------------ecCCCeEEEEEcCccccccc-------c
Confidence            36788889999999999999999985                          34577899999877654321       1


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      .++.....    .+|.|.+++.+|+|.|+|.+.|. +.......+.|
T Consensus        48 ~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          48 VRFIVLSN----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             TTEEECTT----SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eeeeeeee----eeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEE
Confidence            22222211    17999999999999999999874 33333344444

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9e-15  Score=91.20  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=61.1

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceE----EEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVF----SVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      .+....+.|.+.|+|.|.+.|++ ++..+.....  ......    ....+.|.|.+++.+|.|.|+|.|.|..|.. ++
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~-~g~~l~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~   90 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFY-NGAILNESKY--ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EK   90 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEE-TTEEECCCSS--EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEE-CCEEeeeeee--eeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EE
Confidence            46677899999999999999999 6665542211  000000    1123469999999999999999999999955 88


Q ss_pred             eEEEEEEeec
Q psy7941         228 RLMLHVHCTY  237 (238)
Q Consensus       228 ~~~l~V~~~p  237 (238)
                      ++.|.|..+|
T Consensus        91 ~~~v~V~~~P  100 (103)
T d1wwbx_          91 QISAHFMGWP  100 (103)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEEEEeCC
Confidence            9999888776

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=1.6e-14  Score=88.02  Aligned_cols=86  Identities=16%  Similarity=0.232  Sum_probs=62.5

Q ss_pred             cccceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.|.. .+..+.+.+|+++.|.|.+.                          +.|.|.+.|+|+++......      
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~------   50 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAF--------------------------GNPVPQIKWRKLDGSQTSKW------   50 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEE--------------------------EESCCEEEEEECCSCCSCCC------
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEE--------------------------EccCCEEEEEecccccceEe------
Confidence            4677765 47899999999999999995                          34577899999765432110      


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                                .....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|.
T Consensus        51 ----------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          51 ----------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             ----------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence                      01112899999999999999999988643 3445556554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.52  E-value=7e-14  Score=88.19  Aligned_cols=101  Identities=25%  Similarity=0.312  Sum_probs=64.6

Q ss_pred             cccceecc-CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee---ee
Q psy7941           7 FEPDFLYP-LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH---EH   82 (238)
Q Consensus         7 ~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~---~~   82 (238)
                      .+|.|... |+++.+.+|+++.|.|.+.                          +.|.|++.|++++........   ..
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~   56 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVY--------------------------SDAQPHIQWIKHVEKNGSKYGPDGLP   56 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEE--------------------------CSSCCEEEEEEEC-------------
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEE--------------------------EcCCCeEEEEecCccCCceeccCCce
Confidence            46777765 7899999999999999995                          456788999997543211110   00


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEE
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEV  133 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  133 (238)
                      ...................|.|.+++.+|+|.|+|.+.|. +.....+.|.|
T Consensus        57 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          57 YLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            0011111112222334558999999999999999999886 44455566665

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.8e-13  Score=83.29  Aligned_cols=86  Identities=26%  Similarity=0.397  Sum_probs=61.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .|.++.+.+|+++.|.|.+.                          +.|.+.+.|+|++..+....         +....
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~--------------------------g~p~p~v~W~k~g~~l~~~~---------~~~~~   46 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVE--------------------------GMEEPDIQWVKDGAVVQNLD---------QLYIP   46 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEE--------------------------SCSSCCEEEEETTEECCSSE---------EEEEE
T ss_pred             cCeeEEEcCCCeEEEEEEEE--------------------------ecCCceEEEEEeecccccce---------eeeee
Confidence            47789999999999999995                          34577899999876643221         11111


Q ss_pred             -EcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE
Q psy7941          94 -HNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV  134 (238)
Q Consensus        94 -~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~  134 (238)
                       ........|.|.+++.+|+|.|+|.+.|....  +..+.|.|.
T Consensus        47 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          47 VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             ecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence             12223448999999999999999999886443  345666664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.7e-15  Score=92.99  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             EEcCCcccccccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCe
Q psy7941         133 VVIPPDISSEETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       133 v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G  211 (238)
                      |..||.+.....     ...+....|.|.+.|+|.|.+.|++ ++..+......... ........+.|.|.++..+|.|
T Consensus         2 V~~PP~i~~~~~-----~~~~~~~~i~~~v~G~P~P~v~W~~-n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (105)
T d1wwca_           2 VYYPPRVVSLEE-----PELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   75 (105)
T ss_dssp             CCCCCCCCCCCC-----CCCCCEEEEEEEEECSSCCEEEEEE-TTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEcCCeeEEeCC-----CEEEEEEEEEEEEEEeCCCeEEEEe-CccccCCCcceeeeEEeecccceEEEEEeecccccce
Confidence            456666543211     1234456688899999999999999 55554322110000 0000112346999999999999


Q ss_pred             EEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      .|+|.|.|..|.. ++++.|.|..+|
T Consensus        76 ~Y~C~a~N~~G~~-~~~~~v~V~~~P  100 (105)
T d1wwca_          76 NYTLIAKNPLGTA-NQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEEEETTEEE-EEEEEECCSCCC
T ss_pred             EEEEEEEcCCCEE-EEEEEEEEEeCC
Confidence            9999999999944 888999888776

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.1e-13  Score=83.95  Aligned_cols=83  Identities=23%  Similarity=0.369  Sum_probs=58.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +...+..+.+.+|+++.|.|.+..                         +.|.+.+.|+|++.....          .+.
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~-------------------------~~p~~~v~W~k~~~~~~~----------~~~   49 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKS-------------------------KSPAYTLVWTRLHNGKLP----------SRA   49 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEE-------------------------SSSCCEEEEEEGGGBCCC----------TTE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccC-------------------------CCCCCEEEEecCCceeec----------ccc
Confidence            345677889999999999999862                         345678999998765432          111


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      ....     .+|.|.+++.+|+|.|+|.+.|... ....+.|.|
T Consensus        50 ~~~~-----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          50 MDFN-----GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEET-----TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             Eeec-----eEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            1111     1899999999999999999988644 333344444

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2e-13  Score=85.26  Aligned_cols=95  Identities=18%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+.|+..++...+..|+++.|.|.+.+                          .| .|.+.|+|++..+.....      
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g--------------------------~p~~P~v~W~k~~~~~~~~~~------   50 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKY--------------------------CANRPHVTWCKLNGTTCVKLE------   50 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEEC--------------------------SSSCCEEEEEEECSSCEEECC------
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEe--------------------------eCCCCEEEEEecCcccccccc------
Confidence            466778889999999999999999964                          33 368999998766543221      


Q ss_pred             CccEEEE-EcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE
Q psy7941          87 NARLSVT-HNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~  134 (238)
                      ..+.... ......+.|.|.+++.+|+|.|+|.+.|....  +..+.+.|.
T Consensus        51 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          51 DRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             SSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            1112212 12234558999999999999999999886442  334556654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-14  Score=87.03  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      ..|.|..++..+.+.+|+++.|.|.+.+.                         .++++++|+|++..+..         
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~-------------------------~~~~~i~W~k~~~~l~~---------   50 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEP-------------------------EDNATVHWVLRKPAAGS---------   50 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCT-------------------------TCCSEEEEEEECSSSSC---------
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecC-------------------------CCCceEEEEEccccccc---------
Confidence            57899999999999999999999998531                         12457999998766532         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ..+.......    +|.|.+++.+|+|.|+|.+.+.
T Consensus        51 ~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1          51 HPSRWAGMGR----RLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCEEEEEESS----EEEECSCCGGGCEEEEEESSSS
T ss_pred             eeeEEecCCC----EEEECCCChhcCEEEEEEECCc
Confidence            1222222221    8999999999999999998654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=86.05  Aligned_cols=96  Identities=22%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             CCcccccccCCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEE--EeeceEEEEEee-cCCCe
Q psy7941         136 PPDISSEETSGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFS--VESEVLSLTKVT-RSEMG  211 (238)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~-~~d~G  211 (238)
                      ||.+..  .+....+.+|+.+.|.|.+.|.|.| .+.|++++..................  .....|.|.++. .+|+|
T Consensus         2 PP~i~~--~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKA--VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEE--SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CceEEE--cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            455543  2445678899999999999999988 79999854322111111111111111  123478899998 57999


Q ss_pred             EEEEEeeeCCCCCccceEEEEEE
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .|+|.|.|..|.. +..+.|.|.
T Consensus        80 ~Y~C~A~N~~G~~-~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSD-QAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEEEECCCEE-EEEEEEEEC
Confidence            9999999999944 777777773

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.49  E-value=8e-14  Score=87.93  Aligned_cols=88  Identities=25%  Similarity=0.369  Sum_probs=60.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCC---------cceEEEeeceEEEEEeecCCCeEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSS---------QKVFSVESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      +....+..|+++.|.|.+.|.|.|.+.|++++.............         ..........|.|.++..+|.|.|+|
T Consensus        12 P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   91 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC   91 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEE
Confidence            566789999999999999999999999998432211000000000         00001223579999999999999999


Q ss_pred             EeeeCCCCCccceEEEEE
Q psy7941         216 IAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       216 ~~~n~~g~~~~~~~~l~V  233 (238)
                      .|.|..|.. .+++.|.|
T Consensus        92 ~a~N~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          92 LAGNSIGIS-FHSAWLTV  108 (109)
T ss_dssp             EEECSSCEE-EEEEEEEE
T ss_pred             EEEECCCEE-EEEEEEEE
Confidence            999999944 77788876

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-14  Score=89.37  Aligned_cols=88  Identities=17%  Similarity=0.443  Sum_probs=61.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ...+.+.+|+++.|.|.+.|.|.|.+.|+++++........    ...........++.|.|.++..+|+|.|+|.|.|.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            34566889999999999999999999999965433221111    01111112234567999999999999999999999


Q ss_pred             CCCCccceEEEEE
Q psy7941         221 VPPTVSKRLMLHV  233 (238)
Q Consensus       221 ~g~~~~~~~~l~V  233 (238)
                      .|.. ...+.|.|
T Consensus        91 ~G~~-~~~~~v~v  102 (105)
T d1nbqa1          91 GGNS-YGEVKVKL  102 (105)
T ss_dssp             TSSC-EECCEEEC
T ss_pred             CCCE-EEEEEEEE
Confidence            9955 44444443

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=90.18  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      ..|.|+..|..+.+..|+++.|.|.+.......                       .|.+.|++++.......      .
T Consensus         3 p~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~-----------------------~p~v~W~k~~~~~~~~~------~   53 (110)
T d2avga1           3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLK-----------------------PPVVKWFKGKWVDLSSK------V   53 (110)
T ss_dssp             TTCSEEECCCCEEEETTSEEEEEEEEECCSCSS-----------------------SCEEEEECSTTCCSTTT------C
T ss_pred             CCCEeEECCCeEEEECCCCEEEEEeecCCCCCC-----------------------CCEEEEEeCceeeeccc------C
Confidence            457889999999999999999999996432111                       46799999764322111      0


Q ss_pred             CccEEEEE-----cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEc
Q psy7941          87 NARLSVTH-----NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVI  135 (238)
Q Consensus        87 ~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  135 (238)
                      ..++....     .....++|.|.+++..|+|.|+|.+.|. +.....+.|.|..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          54 GQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             SSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            11111110     1113458999999999999999999876 4445556676653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=93.28  Aligned_cols=99  Identities=16%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             cCCcccc---cccCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC---------CC--------------C
Q psy7941         135 IPPDISS---EETSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN---------PP--------------S  188 (238)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~---------~~--------------~  188 (238)
                      .||.+..   ...+..+.+..|+.+.|.|.+.|.|.|.+.|++++.........         ..              .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            4565532   23355678999999999999999999999999854321110000         00              0


Q ss_pred             C-cc-eEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         189 S-QK-VFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       189 ~-~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      . .. ........|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            0 00 01112246999999999999999999999995 4788888875

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=2.3e-14  Score=88.43  Aligned_cols=75  Identities=23%  Similarity=0.476  Sum_probs=56.3

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccceEEEE
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSKRLMLH  232 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~  232 (238)
                      ++.+.|.|.+.|.|.|.++|++ ++..+....    ........+..|.+..+..+|.|.|+|.|.|..|...++.+.|.
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~-ng~~i~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKM-NGTELKMGP----DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEE-TTEECCCST----TSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEE-eeeeccCCC----CceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            4789999999999999999999 555543221    12233334456777788899999999999999997666777664

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=8.6e-14  Score=87.91  Aligned_cols=86  Identities=23%  Similarity=0.356  Sum_probs=59.9

Q ss_pred             eecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecC-----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         149 MVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSN-----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..|+.+.|.|.+. |.|.+.+.|+++ +..+.....     ..............|.|.++..+|.|.|+|.|.|..|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEET-TEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeC-CeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            577899999999984 799999999994 443322211     0011111222344799999999999999999999999


Q ss_pred             CCc-cceEEEEEEe
Q psy7941         223 PTV-SKRLMLHVHC  235 (238)
Q Consensus       223 ~~~-~~~~~l~V~~  235 (238)
                      ... +..+.|.|..
T Consensus        92 ~~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 TAMRSEAAHMDAVE  105 (110)
T ss_dssp             CCEECCCEEEEEES
T ss_pred             cEEEEEEEEEEEEe
Confidence            543 4567777754

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.2e-13  Score=85.96  Aligned_cols=88  Identities=22%  Similarity=0.479  Sum_probs=62.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC----CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN----PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      ...+.+.+|+.+.|.|.+.|.|.|.+.|++.++........    ...........++.|.|.++..+|.|.|+|.|.|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence            34567889999999999999999999999865543322111    01111122334567999999999999999999999


Q ss_pred             CCCCccceEEEEE
Q psy7941         221 VPPTVSKRLMLHV  233 (238)
Q Consensus       221 ~g~~~~~~~~l~V  233 (238)
                      .|.. ...+.|.|
T Consensus        88 ~g~~-~~~~~v~v   99 (102)
T d1f97a1          88 GGQN-YGEVSIHL   99 (102)
T ss_dssp             TSSS-EEEEEEEE
T ss_pred             CCCE-EEEEEEEE
Confidence            9954 55544444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-14  Score=91.38  Aligned_cols=99  Identities=19%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .|+..|+++.+.+|+++.|.|.+.+.+...                       .|.+.|+|++.......      ...+
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~-----------------------~p~v~W~k~~~~~~~~~------~~~~   52 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLR-----------------------KPTIKWFKGKWMDLASK------AGKH   52 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSS-----------------------CCEEEEEESSSCCHHHH------TTSS
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCC-----------------------CCEEEEEEeeccccccc------ccee
Confidence            377889999999999999999997432211                       46799999764322110      0111


Q ss_pred             EEEEE-----cCCCeEEEEEcccCcccCeEEEEEEecC-CCcceeeEEEEEcCC
Q psy7941          90 LSVTH-----NDANTWTLNIRSVRREDRGYYMCQVNTN-PMTKQMAFLEVVIPP  137 (238)
Q Consensus        90 ~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~~  137 (238)
                      +....     .....+.|.|.+++.+|+|.|+|.+.|. +.....+.|.|..++
T Consensus        53 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          53 LQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred             eeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            11111     1113448999999999999999999886 444556778887544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.7e-15  Score=90.24  Aligned_cols=81  Identities=21%  Similarity=0.230  Sum_probs=61.3

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~  224 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++........      .........|.|.++..+|.| .|+|.|.|..|..
T Consensus        10 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~   83 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA   83 (92)
T ss_dssp             CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC
T ss_pred             CCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee------eeeeccceeEEEccccccccceEEEEEEEcCCCEE
Confidence            446688999999999999999999999995543322211      111233447999999999999 6999999999954


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                       ..++.|.|
T Consensus        84 -~~s~~l~V   91 (92)
T d2ifga1          84 -EVSVQVNV   91 (92)
T ss_dssp             -CEEECCCC
T ss_pred             -EEEEEEEE
Confidence             67776655

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3e-13  Score=83.94  Aligned_cols=96  Identities=20%  Similarity=0.325  Sum_probs=65.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|...+....+.+|+.+.|.|.+.+                          .|++ .+.|++++........   ...
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g--------------------------~P~p~~i~W~k~~~~~~~~~~---~~~   52 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSES--------------------------VPPVTDWAWYKITDSEDKALM---NGS   52 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCC--------------------------SSCCCEEEEEECCSSSCEECC---TTG
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEe--------------------------cCCeeEEEEEeccceeeeecc---cCC
Confidence            788988899999999999999999853                          3344 6999997543221110   112


Q ss_pred             CccEEEEEcCCCeEEEEEcccC-cccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVR-REDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                      ..++.+... ....+|.|.++. ..|+|.|+|.+.|..+ ....+.|.|
T Consensus        53 ~~~~~~~~~-~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          53 ESRFFVSSS-QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             GGTEEEEEE-TTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceEEEEeC-CCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            345555443 344589999998 5799999999988643 344444544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.8e-13  Score=82.80  Aligned_cols=96  Identities=16%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-eE--e
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-HV--I   84 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~--~   84 (238)
                      .|.+..++..+.+.+|+++.|.|.+.+                          .|.+.+.|++.+......... ..  .
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~~~~~~~~~   54 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSG--------------------------FSSPRVEWKFVQGSTTALVCYNSQITA   54 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEES--------------------------CSSEEEEEEEEETTEEEEEEETTEECG
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCC--------------------------CCCCeEEEEeccccceeeecccccccc
Confidence            366778888899999999999999963                          346679999976544332211 11  1


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                      ....+.....     .+|.|.+++.+|+|.|+|.+.+.. .....+.++|.
T Consensus        55 ~~~~~~~~~~-----~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          55 PYADRVTFSS-----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             GGTTTEEEET-----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEE
T ss_pred             ceeeEEEecC-----CEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEE
Confidence            1123333322     289999999999999999998753 34445555554

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=6.6e-14  Score=85.82  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCC-CceEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSS-AMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .|.|...|.++.+.+|+++.|.|.+.+                          .| ++.+.|++++..+...        
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g--------------------------~p~p~~v~W~~~g~~l~~~--------   47 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEG--------------------------NDQGVKYSWKKDGKSYNWQ--------   47 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEES--------------------------CCSSCEEEEEESSSBCCTT--------
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecC--------------------------CCCeeEEEEEeeeeeeeee--------
Confidence            488888999999999999999999863                          33 3369999987654321        


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..+....   ....+|.|.+++.+|+|.|+|.+.|..+
T Consensus        48 ~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1          48 EHNAALR---KDEGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             TTTEEEC---TTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cceeeec---ccceEEEEeccChhcCeEEEEEEEeCCC
Confidence            1111111   1123899999999999999999988644

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=89.31  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             eeecCCCcEE---EEEEEccccCCeEEEEeCCCeeeEeecCCC----CCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         148 MMVPEGGSAK---LVCKAKGYPTPKITWRREDNKEIIVRSNPP----SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       148 ~~~~~g~~~~---l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +.+..|....   +.|.+.|+|.|.+.|++ ++..+.......    ............|.|.++..+|.|.|+|.|.|.
T Consensus         7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~-ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEECCSSCCEEEEEE-TTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             eEECCCeEEEEEEEEEEEEEecCCeEEEEE-eeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            3344444444   55688999999999999 565543221100    000000112246999999999999999999999


Q ss_pred             CCCCccceEEEEEEeecC
Q psy7941         221 VPPTVSKRLMLHVHCTYL  238 (238)
Q Consensus       221 ~g~~~~~~~~l~V~~~p~  238 (238)
                      .|.. ++++.|.|..+|+
T Consensus        86 ~G~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          86 FGQA-SASIMAAFMDNPF  102 (107)
T ss_dssp             TEEE-EEEEEECCCSCTT
T ss_pred             CCEE-EEEEEEEEEcCCC
Confidence            9954 8899999988884

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=81.80  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ...+.+|+++.|.|.+.                          +.|.|.++|++++......        .         
T Consensus         8 ~~~v~~G~~~~L~C~~~--------------------------g~p~P~i~W~~~~~~~~~~--------~---------   44 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESP--------------------------PGSSPSVQCRSPRGKNIQG--------G---------   44 (84)
T ss_dssp             SSCEETTCCEEEEEECC--------------------------TTCCCEEEEECTTCCEEEE--------S---------
T ss_pred             CeEEECCCeEEEEEEeE--------------------------cCCchheEEEeecccceee--------e---------
Confidence            45788999999999984                          4668899999976543210        1         


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIP  136 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~  136 (238)
                         .+|.|.+++.+|+|.|+|.+.|... ....+.+.|...
T Consensus        45 ---~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          45 ---KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             ---SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             ---eeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence               1899999999999999999987633 344455655543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-13  Score=82.00  Aligned_cols=80  Identities=10%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeecC
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      |.|...|.++.+.+|+++.|.|.+.                          +.|.| +++|+|++..+....       .
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~--------------------------g~P~P~~i~W~k~g~~i~~~~-------~   48 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAV--------------------------GPPEPVTIVWWRGTTKIGGPA-------P   48 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEE--------------------------CSSSCCEEEEEETTEECSCSE-------E
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEe--------------------------cCCcceEEEEEECCEECCCCC-------C
Confidence            7899999999999999999999995                          34455 799999876542111       0


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v  133 (238)
                                +  .+.|.....+|+|.|+|.+.|..+.  +..+.|+|
T Consensus        49 ----------~--~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          49 ----------S--PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             ----------S--SEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ----------c--ceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence                      0  3344455667999999999886543  33455554

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=4.1e-13  Score=82.61  Aligned_cols=90  Identities=18%  Similarity=0.297  Sum_probs=61.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|.  ++++.+.+|+++.|.|.+.                          +.|.+.+.|++++..+....       .
T Consensus         5 ~p~~~--~~~~~~~~G~~v~l~C~~~--------------------------g~P~~~v~W~k~g~~i~~~~-------~   49 (97)
T d1biha3           5 VPQYV--SKDMMAKAGDVTMIYCMYG--------------------------SNPMGYPNYFKNGKDVNGNP-------E   49 (97)
T ss_dssp             EEEEE--CCSEEEETTSCEEEEEEEE--------------------------CSSCCCCEEEETTEECCCCT-------T
T ss_pred             CCeeC--CCCEEEecCCeEEEEEEEE--------------------------EecCCEEEEEEeeeeccccc-------e
Confidence            34443  5688999999999999985                          34577899999877653211       1


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcc--eeeEEEE
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTK--QMAFLEV  133 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~l~v  133 (238)
                      .++.. .......+|.|.+++.+|+|.|+|.+.|..+..  ..+.|+|
T Consensus        50 ~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          50 DRITR-HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             SSEES-CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             eeeee-eeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            11211 112233489999999999999999998864432  2344555

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=85.81  Aligned_cols=94  Identities=16%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             cccceeccCce--eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe
Q psy7941           7 FEPDFLYPLEN--VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI   84 (238)
Q Consensus         7 ~~p~~~~~~~~--~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~   84 (238)
                      ++|.|...+..  +.+..|+++.|.|.+.+                          .|.|.+.|++++..+......   
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g--------------------------~P~p~i~W~~~g~~i~~~~~~---   52 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADG--------------------------FPEPTMSWTKDGEPIENEEED---   52 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEE--------------------------ESCCEEEEEETTEECCCC--C---
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEE--------------------------ecCCEEEEEeCCccccccccc---
Confidence            36777755554  45678999999999863                          457789999987654321110   


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVV  134 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  134 (238)
                        ..+...   .....+|.|.+++.+|+|.|+|.+.|.. .....+.|.|.
T Consensus        53 --~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          53 --DEKHIF---SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             --CSSEEE---CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --ceeEEe---ecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence              011111   1122389999999999999999998763 34445556664

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.4e-13  Score=81.27  Aligned_cols=82  Identities=16%  Similarity=0.268  Sum_probs=57.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      +...+.+..|+++.|.|.+.                          +.|.|.++|++++.......          ..  
T Consensus         7 P~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~~~----------~~--   48 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTT--------------------------GCESPFFSWRTQIDSPLNGK----------VT--   48 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEE--------------------------SCSSCEEEEEETTCCCCSSE----------EE--
T ss_pred             CCCcEEEECCCEEEEEEecc--------------------------CCCCceEEEEecCccceeee----------ee--
Confidence            34456678999999999995                          45678899999776532111          00  


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                       ......+|.|.+++.+|+|.|+|.+.|... ....+.+.|.
T Consensus        49 -~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          49 -NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             -EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -eecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence             112233899999999999999999988643 3444555553

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.44  E-value=3.8e-14  Score=87.36  Aligned_cols=83  Identities=19%  Similarity=0.358  Sum_probs=55.9

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+..|+++.|.|.+.                          +.|.|.+.|++++..+.....      .......  
T Consensus        13 ~~~~v~~G~~v~l~C~~~--------------------------g~P~p~i~W~kng~~l~~~~~------~~~~~~~--   58 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAG--------------------------GNPMPTMRWLKNGKEFKQEHR------IGGYKVR--   58 (97)
T ss_dssp             CEEEECTTCCEEEECCEE--------------------------EESCCEEEEEETTEECCGGGS------TTCCEEE--
T ss_pred             ccEEECCCCcEEEEEEEe--------------------------EECCCEEEEEECCEeccccCc------eeeEEEc--
Confidence            345688999999999985                          345778999998776532110      0111111  


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                       ....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|
T Consensus        59 -~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          59 -NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             -GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -CCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence             1223899999999999999999988643 334444544

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=87.89  Aligned_cols=87  Identities=17%  Similarity=0.244  Sum_probs=59.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEE-EEeC-CCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKIT-WRRE-DNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~-W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+..+..|+++.|.|.+.|.|.|.+. |.+. ++.........   ........+.|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   84 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK---VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG   84 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE---EEETTEEEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee---EEEeecCceEEEECCCCHHHCeEEEEEEEeCCC
Confidence            456789999999999999999877543 3332 22222111000   000011234699999999999999999999999


Q ss_pred             CCccceEEEEEE
Q psy7941         223 PTVSKRLMLHVH  234 (238)
Q Consensus       223 ~~~~~~~~l~V~  234 (238)
                      ...+....|.|+
T Consensus        85 ~~~s~~a~L~Vk   96 (96)
T d2c9aa1          85 VGISNYAELVVK   96 (96)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             eEEEEEEEEEEC
Confidence            766776788774

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=83.44  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=54.4

Q ss_pred             CCceeecCCCcEEEEEEEccccC-CeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPT-PKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...+.+.+|+.+.|.|.+.+.|. ++++|++++ ..+..      ........+..|.|.++..+|+|.|+|.|.|..+
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~-~~l~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRK-PAAGS------HPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEEC-SSSSC------CCEEEEEESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEcc-ccccc------eeeEEecCCCEEEECCCChhcCEEEEEEECCccc
Confidence            45577888999999999988665 599999954 33321      1233445567899999999999999999987654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.5e-14  Score=87.92  Aligned_cols=95  Identities=22%  Similarity=0.416  Sum_probs=62.3

Q ss_pred             CCcccccccCCceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCC----CCcceEEEeeceEEEEEeecCCC
Q psy7941         136 PPDISSEETSGDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPP----SSQKVFSVESEVLSLTKVTRSEM  210 (238)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~  210 (238)
                      ||.+.....  ...+..|+.+.|.|.+ .|.|.|.+.|+++ +..+.......    ..........+.|.|.++..+|.
T Consensus         2 PP~~p~~~~--~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~   78 (104)
T d1nbqa2           2 PPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT   78 (104)
T ss_dssp             CCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEET-TCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGC
T ss_pred             CCcccccCC--CCEEecCCcEEEEEEeecCCCCCEEEEEEC-CEEccCCCceeEEeeCCcEEEeecccceEECCCCcccC
Confidence            455443322  2457789999999998 5799999999994 44432222111    11111122345789999999999


Q ss_pred             eEEEEEeeeCCCCCc-cceEEEEE
Q psy7941         211 GAYQCIAANGVPPTV-SKRLMLHV  233 (238)
Q Consensus       211 G~y~C~~~n~~g~~~-~~~~~l~V  233 (238)
                      |.|+|.|.|..|... +..+.|+|
T Consensus        79 G~Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          79 GEYSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             CCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cEEEEEEEECCCceEEEEEEEEEE
Confidence            999999999999542 34555554

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.42  E-value=5.3e-13  Score=80.41  Aligned_cols=78  Identities=15%  Similarity=0.303  Sum_probs=54.4

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|+++.|+|.+..                         +.|.+.+.|||++..+...                 
T Consensus         8 p~~~v~eG~~v~L~C~~~~-------------------------~~p~~~~~W~k~g~~~~~~-----------------   45 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWK-------------------------DKPLVKVTFFQNGKSKKFS-----------------   45 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGG-------------------------GCCCEEEEEEETTEEEEEE-----------------
T ss_pred             CCCeEecCCeEEEEEEecC-------------------------CCCCcEEEEEeeccccccc-----------------
Confidence            3445889999999999852                         2345679999987543210                 


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIP  136 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~  136 (238)
                       .....|.|.+++.+|+|.|.|.+.+....  +..+.|.|+.|
T Consensus        46 -~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          46 -RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             -SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             -ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence             01118999999999999999999876432  34456666543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.41  E-value=7.8e-13  Score=79.80  Aligned_cols=78  Identities=10%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+....+.+|+++.|+|.+..                         +.|.+.+.|||++.......             .
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~-------------------------~~p~~~~~W~kng~~~~~~~-------------~   49 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWK-------------------------NTALHKVTYLQNGKDRKYFH-------------H   49 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECT-------------------------TCCCEEEEEEETTEEEEEEE-------------E
T ss_pred             ECCCCeEccCCeEEEEEEecC-------------------------CCCCcEEEEEEcccccceec-------------c
Confidence            344556889999999999752                         23456799999875532110             0


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEE
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVV  134 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~  134 (238)
                           ...|.|.+++.+|+|.|+|.+.+....  +..+.|+|+
T Consensus        50 -----~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          50 -----NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             -----CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             -----ccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence                 017889999999999999999875432  344556654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-13  Score=84.23  Aligned_cols=95  Identities=17%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee-E--e
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH-V--I   84 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~-~--~   84 (238)
                      .+.+...++.+.+.+|+++.|.|.+.+                          .|.|.+.|++++.......... .  .
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g--------------------------~p~p~v~W~~~~~~~~~~~~~~~~~~~   57 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSG--------------------------FSSPRVEWKFDQGDTTRLVCYNNKITA   57 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEES--------------------------CSSEEEEEEEEETTEEEESEETTEECT
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCC--------------------------CCCCeeEEEeeeeceeeeeeccceeec
Confidence            345566777889999999999999963                          4567899999766543322111 1  1


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEV  133 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v  133 (238)
                      ....+......     +|.|.+++.+|+|.|+|.+.|.. .....+.++|
T Consensus        58 ~~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          58 SYEDRVTFLPT-----GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TTTTTCEEETT-----EEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             cccceeeecCc-----eEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            11223333222     89999999999999999998753 3344444444

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.6e-13  Score=80.49  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      +....+.+|+.+.|+|.+..                         +.++.++.|||++..+...                
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~-------------------------~~~~~~~~w~k~g~~~~~~----------------   45 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWR-------------------------NWDVYKVIYYKDGEALKYW----------------   45 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGG-------------------------GCCEEEEEEEETTEECCSC----------------
T ss_pred             CCcCeEeCCCEEEEEEEecC-------------------------CCCCeEEEEEEeeeccccc----------------
Confidence            44456789999999999853                         2235579999987543210                


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCC--cceeeEEEEEcCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPM--TKQMAFLEVVIPP  137 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~~  137 (238)
                        .....|.|.+++.+|+|.|.|++.+...  .+..+.|.|..+|
T Consensus        46 --~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          46 --YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             --CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             --cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence              0112899999999999999999987543  2445678887765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-12  Score=79.60  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      |..+++++.+.+|+++.|.|.+.+                           |.+.+.|++++......       ...++
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~~---------------------------p~~~v~W~k~~~~~~~~-------~~~~~   48 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVSE---------------------------DDANVKWFKNGEEIIPG-------PKSRY   48 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS---------------------------SSCCCEEEETTEECCCS-------TTCSE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEECC---------------------------CCceEEEEEeecccCCC-------CCccE
Confidence            567788999999999999999842                           35569999987654321       12234


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      ..... ....+|.|.+++.+|+|.|+|.+.+.   ...+.|.|.
T Consensus        49 ~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~---~~~a~l~V~   88 (90)
T d1x44a1          49 RIRVE-GKKHILIIEGATKADAAEYSVMTTGG---QSSAKLSVD   88 (90)
T ss_dssp             EEEEE-TTEEEEEEEEECTTTCSEEEEEETTE---EEEEEEEEE
T ss_pred             EEEEe-CCccEEEECccccccCEEEEEEEecc---eEEEEEEEE
Confidence            43332 34568999999999999999999652   344556664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=79.60  Aligned_cols=88  Identities=20%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             cccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           7 FEPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         7 ~~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .+|.|..... .+.|.+|+++.|.|.+.+                           |.+.+.|++++..+..        
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~~---------------------------p~~~v~W~k~g~~i~~--------   48 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELAD---------------------------HDAEVKWLKNGQEIQM--------   48 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECSS---------------------------SSSCCEEEESSSEECC--------
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEECC---------------------------CCceEEEEEcCcccee--------
Confidence            4678887765 467999999999999842                           3567999998876532        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .+.++.+... .+..+|.|.+++.+|+|.|+|.+.+.   ...+.|.|
T Consensus        49 ~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~s~~l~V   92 (94)
T d1pd6a_          49 SGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVGGE---KCSTELFV   92 (94)
T ss_dssp             CSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEETTE---EECCEEEE
T ss_pred             eeeeEeeecc-CCeEEeecCCCCceecEEEEEEEeeE---EEEEEEEE
Confidence            1233444332 34568999999999999999999552   23344555

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=2.2e-13  Score=85.74  Aligned_cols=81  Identities=23%  Similarity=0.338  Sum_probs=58.1

Q ss_pred             eeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCe---EEEEEeeeCCCC
Q psy7941         148 MMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMG---AYQCIAANGVPP  223 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~n~~g~  223 (238)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++....................++.|.|.+++.+|+|   .|+|.|.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            456789999999986 8999999999996544332222122223333445668999999998877   799999999995


Q ss_pred             CccceE
Q psy7941         224 TVSKRL  229 (238)
Q Consensus       224 ~~~~~~  229 (238)
                      . ...+
T Consensus        92 ~-~~~~   96 (111)
T d1biha2          92 E-EVVL   96 (111)
T ss_dssp             S-CEEE
T ss_pred             c-eEEE
Confidence            5 4443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6e-14  Score=85.58  Aligned_cols=79  Identities=14%  Similarity=0.308  Sum_probs=60.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.|...+....+.+|+.+.|.|.+.                          +.|.|.++|++++..+......      
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~~------   49 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVE--------------------------GRGLEQAGWILTELEQSATVMK------   49 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEE--------------------------CSSCCCCCEEESCCCSSEEECC------
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeecc--------------------------CCCCcEEEEEECCceeeeeeee------
Confidence            58888889999999999999999995                          4567889999987654321110      


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPM  124 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~  124 (238)
                            ........|.|.+++.+|.| .|+|.+.|...
T Consensus        50 ------~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1          50 ------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             ------CCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             ------eeeccceeEEEccccccccceEEEEEEEcCCC
Confidence                  11223448999999999999 79999988643

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-13  Score=81.75  Aligned_cols=78  Identities=21%  Similarity=0.388  Sum_probs=56.9

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCccc
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTVSK  227 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~~~  227 (238)
                      ..+.+|+++.|.|.+.| |.|.+.|+++ +..+....     .......++.|.|.++..+|+|.|+|.|.|..|.. +.
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~-g~~l~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~-~~   78 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQ-NGVLKAES-----PKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK-TV   78 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEES-SSBCCCCS-----SSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS-EE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecC-cccceeee-----eeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE-EE
Confidence            56889999999999988 7789999994 44443221     12223345579999999999999999999998833 44


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      ...|.+
T Consensus        79 ~~~l~~   84 (92)
T d1olza1          79 FQVVAK   84 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.1e-12  Score=80.42  Aligned_cols=84  Identities=23%  Similarity=0.512  Sum_probs=59.7

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      ..+..+.+|+++.|.|.+.+                           +++.+.|++++..+..         ..+..+..
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~---------------------------~~~~v~W~~~~~~l~~---------~~~~~~~~   53 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND---------------------------IGANIQWLFNSQSLQL---------TERMTLSQ   53 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC---------------------------SSCEEEEEETTEECCC---------CTTEEEET
T ss_pred             cCceEEeCCCeEEEEEccCC---------------------------CCCCEEEEEeeeeccc---------ccceeccC
Confidence            45667899999999998743                           2456999998765432         23333322


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEEEcCC
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEVVIPP  137 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~~  137 (238)
                      .   ..+|.|.+++.+|.|.|+|.+.|....  +..+.|.|..+|
T Consensus        54 ~---~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          54 N---NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             T---TTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             C---ceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            1   128999999999999999999886432  335678887665

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-14  Score=83.50  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             cccee--ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee
Q psy7941           8 EPDFL--YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~   85 (238)
                      .|.|.  ..+..+.+.+|+.+.|.|.+.                          +.|.|.+.|+|++.....        
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~--------------------------G~P~P~v~W~k~g~~~~~--------   47 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAW--------------------------GNPLPELKCLKDGTFPLP--------   47 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCE--------------------------EESCCEEEEEETTTEECC--------
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEe--------------------------EcCccEEEEEEeecccee--------
Confidence            35664  336788999999999999985                          456788999998765321        


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                                     .+.+.+++.+|+|.|.|.+.|... .+..+.|.|..
T Consensus        48 ---------------~~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          48 ---------------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             ---------------TTSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ---------------eeeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEEC
Confidence                           223456789999999999988643 34455566654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.37  E-value=7e-13  Score=79.36  Aligned_cols=73  Identities=21%  Similarity=0.315  Sum_probs=56.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++ ++..+.             .....|.|..+..+|+|.|+|.+.|..+ 
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~-~g~~~~-------------~~~~~l~i~~v~~~dsG~Y~C~a~ns~~-   75 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFH-NGNLIP-------------THTQPSYRFKANNNDSGEYTCQTGQTSL-   75 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEE-TTEECT-------------TCCSSEEEEECCGGGCEEEEEECTTSBC-
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeec-cccccc-------------ccccceEEeeccccCCcEEEEECCCCcc-
Confidence            444568899999999999988766 688888 554432             1234689999999999999999988654 


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                        +..+.|+|.
T Consensus        76 --S~~v~l~V~   84 (85)
T d2fcba1          76 --SDPVHLTVL   84 (85)
T ss_dssp             --CCCEEEEEE
T ss_pred             --cccEEEEEE
Confidence              666777775

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.4e-12  Score=82.20  Aligned_cols=99  Identities=20%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee-c
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-N   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~   86 (238)
                      +|.+..-.....+.+|+++.|.|.+.                         .+.|.+.++|++++..+.......... .
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~-------------------------~g~p~~~v~W~~~~~~~~~~~~~~~~~~~   56 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEH-------------------------DGSPPSEYSWFKDGISMLTADAKKTRAFM   56 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECS-------------------------CCBSCCEEEEEETTEESBC-----CBSCS
T ss_pred             CCccceeCCCCEEecCCeEEEEEEee-------------------------cCCCCCEEEEEeCCeEecCCCceeEEeec
Confidence            34443222334578999999999974                         234578899999876543322211111 1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-c--ceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-T--KQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~l~v~  134 (238)
                      ...+..   ......|.|.+++.+|+|.|+|.+.|..+ .  +..+.|+|.
T Consensus        57 ~~~~~~---~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          57 NSSFTI---DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             SSCEEE---CTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             CceEEE---eecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            111111   12233799999999999999999988643 2  223445554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=2.6e-13  Score=83.53  Aligned_cols=81  Identities=16%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             cccceeccCceeEEEec---CCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE
Q psy7941           7 FEPDFLYPLENVTIAQG---RDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV   83 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~   83 (238)
                      ..|.|...|.++.+..|   +++.|.|.+.+                          .|.|.++|++++..+....    
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g--------------------------~P~p~v~W~~ng~~i~~~~----   52 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARA--------------------------NPPATYRWKMNGTELKMGP----   52 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEE--------------------------ESCCEEEEEETTEECCCST----
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEE--------------------------eCCCEEEEEEeeeeccCCC----
Confidence            46889989998887766   78999999853                          4577899999876643211    


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         +.++....    ...|.|..++.+|+|.|+|.+.|..+
T Consensus        53 ---~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~N~~G   86 (97)
T d1cs6a1          53 ---DSRYRLVA----GDLVISNPVKAKDAGSYQCVATNARG   86 (97)
T ss_dssp             ---TSSEEEET----TEEEEESCCHHHHCEEEEEEEEETTE
T ss_pred             ---CceEEeee----eeEEEEecccccCCEEEEEEEEECCC
Confidence               22222211    12788888999999999999988644

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.4e-14  Score=87.29  Aligned_cols=89  Identities=17%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+........+.+|+++.|.|.+.                         .+.|.+.+.|++++..+............
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~-------------------------~g~p~p~v~W~~~~~~i~~~~~~~~~~~~   56 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQ-------------------------DGSPPSEYTWFKDGIVMPTNPKSTRAFSN   56 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCC-------------------------SCBSCCEEEEEETTCCCCSCSSSSSSCTT
T ss_pred             CCcccccCCCCEEecCCcEEEEEEee-------------------------cCCCCCEEEEEECCEEccCCCceeEEeeC
Confidence            56665555556788999999999873                         23557889999987664332211111111


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .+...   ......|.|.+++.+|.|.|+|.+.|..+
T Consensus        57 ~~~~~---~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          57 SSYVL---NPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             CCCCC---CTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CcEEE---eecccceEECCCCcccCcEEEEEEEECCC
Confidence            11111   11233899999999999999999988643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.1e-13  Score=85.62  Aligned_cols=100  Identities=17%  Similarity=0.235  Sum_probs=65.4

Q ss_pred             ccccee-----ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-
Q psy7941           7 FEPDFL-----YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-   80 (238)
Q Consensus         7 ~~p~~~-----~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-   80 (238)
                      .+|.+.     ..+..+.|.+|+++.|.|.+.                          +.|.+.+.|++++........ 
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~--------------------------G~P~p~i~W~~~~~~~~~~~~~   56 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--------------------------GDPAPTVIWQKAITQGNKAPAR   56 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECC--------------------------SBSCCEEEEEEECCCSCSSCCC
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEE--------------------------EecCCeEEEeeCCeEccCCccc
Confidence            356653     346688999999999999995                          455788999997644321110 


Q ss_pred             -------------------eeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEE
Q psy7941          81 -------------------EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEV  133 (238)
Q Consensus        81 -------------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v  133 (238)
                                         ........++.+... ....+|.|.+++.+|+|.|+|.+.|..+ ....+.|.|
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          57 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT-KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             CCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE-TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eeeecccccccceeeecCCceeeccCceEEEEEC-CCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence                               000112334554433 3455899999999999999999988643 333444444

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=6.4e-13  Score=82.93  Aligned_cols=75  Identities=20%  Similarity=0.417  Sum_probs=56.5

Q ss_pred             CceeecCCCcEEEEEEE-ccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKA-KGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+.+.+|+.+.|.|.+ .+.|.|.+.|++++.......    .........++.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA----DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCC----CSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccc----cceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            44679999999999997 689999999999544322211    1122233345679999999999999999999998843

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-12  Score=78.68  Aligned_cols=90  Identities=23%  Similarity=0.337  Sum_probs=57.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEe--CCceeeeeeeeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIK--ADTKAVLAIHEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~--~~~~~~~~~~~~~~~   85 (238)
                      .|.|. .+.++.+.+|+++.|.|.+.+                          .|.|.+.|++  .+.......      
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g--------------------------~p~p~~~~~~~~~~~~~~~~~------   48 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIG--------------------------RTVAGDRLWLQGIDVRDAPLK------   48 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEES--------------------------CCCSSCEEEEEETTBCCCCEE------
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEee--------------------------cCCCcEEEEEeeeeeeeecCC------
Confidence            58887 588999999999999999964                          3334444432  222222111      


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCc--ceeeEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMT--KQMAFLEV  133 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v  133 (238)
                         +...........+|.|.++..+|+|.|+|.+.|..+.  +..+.|.|
T Consensus        49 ---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          49 ---EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             ---EEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ---ceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence               1111111222338999999999999999999886543  33355655

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8e-13  Score=81.70  Aligned_cols=86  Identities=14%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CCceeecCCCcEEEEEEEc-cccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAK-GYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +..+...+|+.+.|.|.+. +.|.+.+.|++++........    ........++.|.|.++..+|+|.|+|.|.|..|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   84 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE----QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC   84 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC----TTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc----cceEEeccCCEEEeccceecCCEEEEEEEECCCCe
Confidence            3345677899999999884 678999999995543322111    11223345668999999999999999999999994


Q ss_pred             CccceEEEEEEe
Q psy7941         224 TVSKRLMLHVHC  235 (238)
Q Consensus       224 ~~~~~~~l~V~~  235 (238)
                       ...++.|.|..
T Consensus        85 -~~~~~~L~V~~   95 (101)
T d1iray1          85 -LRIKISAKFVE   95 (101)
T ss_dssp             -EEEEEEEEEEC
T ss_pred             -EEEEEEEEEEe
Confidence             47788888865

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=3.7e-13  Score=81.32  Aligned_cols=85  Identities=16%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCcc
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNAR   89 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~   89 (238)
                      .|..+++++.+.+|+++.|.|.+.                           .|.+.+.|++++..+.         .+.+
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs---------------------------~p~~~v~W~k~g~~i~---------~~~~   46 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS---------------------------EPDVHGQWKLKGQPLT---------ASPD   46 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS---------------------------SSSCCCBCCSSSCCCC---------SSSS
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC---------------------------CCCcEEEEEEeeeecc---------ccee
Confidence            467888999999999999999873                           2356799999876643         2455


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      +.+... ....+|.|.+++.+|+|.|+|.+.+.   ...+.|.|.
T Consensus        47 ~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~n~---~~sa~l~V~   87 (89)
T d1tiua_          47 CEIIED-GKKHILILHNCQLGMTGEVSFQAANA---KSAANLKVK   87 (89)
T ss_dssp             CEEEEC-SSCEEEECCSCCSCCCSEECCBCSSC---BCCEEEEEE
T ss_pred             EEEEee-ceeEEEEEcCCChhcCEEEEEEECce---EEEEEEEEE
Confidence            655544 34458999999999999999998653   234556554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.4e-11  Score=78.27  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--eE-----
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--HV-----   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--~~-----   83 (238)
                      +..+...+.+..|++++|.|.+....+.                       ....+.|++.+.........  ..     
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~-----------------------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~   61 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNA-----------------------TGMEVGWYRSPFSRVVHLYRNGKDQDAEQ   61 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCC-----------------------TTSEEEEEEC--CCEEEEEETTEECGGGS
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCC-----------------------CceEEEEeecCCcceEEEEEecccccccc
Confidence            3455667899999999999998632221                       24468999975432221110  00     


Q ss_pred             -eecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCCcc
Q psy7941          84 -ITNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPPDI  139 (238)
Q Consensus        84 -~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~~~  139 (238)
                       .....|..+...  ..++++|.|.+++.+|+|.|+|.+.+... ....+.|.|..|...
T Consensus        62 ~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          62 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  121 (126)
T ss_dssp             CSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             ccccceeEEEeeccccCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence             011234444432  23578999999999999999999976533 334455777665443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-12  Score=81.24  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=58.6

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC---------CCCCcceEEEeeceEEEEEeecCCCe-EEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN---------PPSSQKVFSVESEVLSLTKVTRSEMG-AYQC  215 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C  215 (238)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+.....         ............+.|.|..++.+|.| .|+|
T Consensus        10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEECTTCEEEEEE-TTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             CEEEEeCCCEEEEEEEeccCCCCeEEEEE-CCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            34567889999999999999999999999 4443321110         00000001112347999999999999 5999


Q ss_pred             EeeeCCCCCccceEEEE
Q psy7941         216 IAANGVPPTVSKRLMLH  232 (238)
Q Consensus       216 ~~~n~~g~~~~~~~~l~  232 (238)
                      .|.|..|.. ++.+.|.
T Consensus        89 ~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          89 FAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             EEECSSCEE-EEEEEEE
T ss_pred             EEEeCCCeE-EEEEEEE
Confidence            999999943 6666553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=1.5e-12  Score=77.74  Aligned_cols=72  Identities=21%  Similarity=0.298  Sum_probs=54.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCe-EEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPK-ITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      +....+.+|+.++|.|.+.+.|.+. +.|++ ++..+.             .....|.|.++..+|+|.|+|.|.|..+ 
T Consensus        12 P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~l~i~~~~~~d~G~Y~C~a~~s~~-   76 (84)
T d1fnla1          12 PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLIS-------------SQASSYFIDAATVNDSGEYRCQTNLSTL-   76 (84)
T ss_dssp             SCCSEEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEE-------------SSCSEEEESSCCGGGCEEEEEECSSSCC-
T ss_pred             CCCcEEeCCCeEEEEEEeccCCCCeEEEEee-eceeee-------------ecceeeEecCCcccCCEEEEEEccCCCc-
Confidence            3446688999999999999988875 56666 554442             1234699999999999999999987654 


Q ss_pred             CccceEEEEE
Q psy7941         224 TVSKRLMLHV  233 (238)
Q Consensus       224 ~~~~~~~l~V  233 (238)
                        +..+.|.|
T Consensus        77 --S~~v~L~V   84 (84)
T d1fnla1          77 --SDPVQLEV   84 (84)
T ss_dssp             --CCCEEEEE
T ss_pred             --cccEEEEC
Confidence              66677765

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=79.59  Aligned_cols=80  Identities=24%  Similarity=0.443  Sum_probs=59.2

Q ss_pred             eeecCCCcEEEEE------EEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         148 MMVPEGGSAKLVC------KAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       148 ~~~~~g~~~~l~C------~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ..+..|....|.|      .+.+.|.|.+.|++ ++.++...      .......++.|.|.++..+|+|.|+|.|.|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~k-dg~~l~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLLD------NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEE-TTEECCCC------SSSEEEETTEEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEE-CCccccCC------CcEEEecCCEEEEcccccccCcEEEEEEEECc
Confidence            4577899999999      56789999999999 66665421      11234456689999999999999999999987


Q ss_pred             CCC---ccceEEEEEE
Q psy7941         222 PPT---VSKRLMLHVH  234 (238)
Q Consensus       222 g~~---~~~~~~l~V~  234 (238)
                      |..   .++.+.+.|.
T Consensus        82 ~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          82 LGKQYPITRVIEFITL   97 (103)
T ss_dssp             TTEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEEEC
Confidence            622   2445555544

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.4e-14  Score=90.05  Aligned_cols=101  Identities=21%  Similarity=0.351  Sum_probs=66.7

Q ss_pred             EEEEcCCcccccccCCceeecCCCcEEEEEEEccc-cCCeEEEEeCCCeeeEeecCCCCCcceEE---EeeceEEEEEee
Q psy7941         131 LEVVIPPDISSEETSGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDNKEIIVRSNPPSSQKVFS---VESEVLSLTKVT  206 (238)
Q Consensus       131 l~v~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~  206 (238)
                      |+|..||.+..   +....+.+|+.+.|.|.+.+. |.+.+.|++++. .+..............   .....|.|.++.
T Consensus         2 L~V~~Pp~i~~---~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~   77 (115)
T d2crya1           2 LTVNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN-VLESGTSGRYTVETISTEEGVISTLTISNIV   77 (115)
T ss_dssp             CCCCSSCCEEE---ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSC-EECSEEETTEEEEEEEETTEEEEEEECTTCC
T ss_pred             eEEecCCEEec---CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeee-eEeeeeeeeEeeeeeccccCcEEEEEEeccc
Confidence            45666776543   234567889999999999985 556899999544 3322111000000000   011368899999


Q ss_pred             cCC-CeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         207 RSE-MGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       207 ~~d-~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      .+| .|.|+|.|.|..|.+ ++.+.|.|..+
T Consensus        78 ~~D~~G~Y~C~A~N~~G~~-~~~~~L~V~~~  107 (115)
T d2crya1          78 RADFQTIYNCTAWNSFGSD-TEIIRLKEQGS  107 (115)
T ss_dssp             HHHHHSCEEEEEECSSCEE-EEEECCCCSCS
T ss_pred             hhcCCeEEEEEEEECCCeE-EEEEEEEEECC
Confidence            998 689999999999954 88888888653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.28  E-value=5.5e-12  Score=75.17  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|....+.+|++++|+|.+.....                         +..+.|++++....         .
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~-------------------------~~~~~~~~~~~~~~---------~   49 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPE-------------------------DNSTQWFHNESLIS---------S   49 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTT-------------------------BCCCEEEETTEEEE---------S
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCC-------------------------CeEEEEeeeceeee---------e
Confidence            3566778888899999999999999864322                         12356677654321         1


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                      .           ..+|.|.+++.+|+|.|+|++.+.. .+..+.|.|
T Consensus        50 ~-----------~~~l~i~~~~~~d~G~Y~C~a~~s~-~S~~v~L~V   84 (84)
T d1fnla1          50 Q-----------ASSYFIDAATVNDSGEYRCQTNLST-LSDPVQLEV   84 (84)
T ss_dssp             S-----------CSEEEESSCCGGGCEEEEEECSSSC-CCCCEEEEE
T ss_pred             c-----------ceeeEecCCcccCCEEEEEEccCCC-ccccEEEEC
Confidence            1           1189999999999999999986532 344455543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-12  Score=75.37  Aligned_cols=82  Identities=20%  Similarity=0.358  Sum_probs=57.2

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEE--eeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ...+..+..|+.+.|.|.+. .|.+.+.|++ ++..+....   ........  ....|.|.++..+|+|.|+|.|.|. 
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k-~~~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFK-NGEEIIPGP---KSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEE-TTEECCCST---TCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEE-eecccCCCC---CccEEEEEeCCccEEEECccccccCEEEEEEEecc-
Confidence            34567889999999999984 5888999999 554443221   11111122  2347999999999999999999774 


Q ss_pred             CCCccceEEEEEEe
Q psy7941         222 PPTVSKRLMLHVHC  235 (238)
Q Consensus       222 g~~~~~~~~l~V~~  235 (238)
                          +.+.+|.|+.
T Consensus        80 ----~~~a~l~V~~   89 (90)
T d1x44a1          80 ----QSSAKLSVDL   89 (90)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----eEEEEEEEEE
Confidence                3345666653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.28  E-value=3.4e-12  Score=79.52  Aligned_cols=79  Identities=23%  Similarity=0.415  Sum_probs=54.9

Q ss_pred             ccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           9 PDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         9 p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +.|. .+.+.+.+.+|+++.|.|.+.                         .+.|.+.+.|+|++..+....       +
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~-------------------------~~~p~~~v~W~k~g~~~~~~~-------~   51 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPP-------------------------PHYPALSYRWLLNEFPNFIPA-------D   51 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCC-------------------------SEESCCEEEEEESSTTCBCCC-------C
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEcc-------------------------CCCCCCEEEEEEeeccccccc-------c
Confidence            3454 445678999999999999873                         234567899999876543211       1


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .+.....   ...+|.|.+++.+|+|.|+|.+.|.
T Consensus        52 ~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2          52 GRRFVSQ---TTGNLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             SSEEECT---TTCCEEESSCCGGGCEEEEEEEEEE
T ss_pred             ceeeeec---CCCEEeecccccccCcEEEEEEEEC
Confidence            2222211   1227999999999999999999774

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.4e-12  Score=77.07  Aligned_cols=81  Identities=15%  Similarity=0.238  Sum_probs=57.6

Q ss_pred             eeecCCCcEEEEEEEcc-ccCC--eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG-YPTP--KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+..|+.++|.|.+.| .|.+  .+.|++ ++..+.......      ....+.|.|.....+|.|.|+|.|.|..|..
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~-~~~~l~~~~~~~------~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~   86 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-GEKELKREPAVG------EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ   86 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEEEEECCT------TTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEcc-cccccccccccc------ccceEEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence            35778999999999986 6665  688999 555554322111      1123468888888889999999999999844


Q ss_pred             ccceEEEEEEee
Q psy7941         225 VSKRLMLHVHCT  236 (238)
Q Consensus       225 ~~~~~~l~V~~~  236 (238)
                       ..++.+.+..|
T Consensus        87 -~~~~~~~~s~p   97 (103)
T d1iama1          87 -GLELFENTSAP   97 (103)
T ss_dssp             -TSCEEEEECCC
T ss_pred             -cCeEeeeEcCC
Confidence             56666666543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.6e-12  Score=76.95  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=59.2

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEE
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT   93 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~   93 (238)
                      .+..+.+.+|+.+.|+|.+..                         +.|.+.+.|+|++........     ...++...
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~-------------------------~~~~~~i~W~k~~~~~~~~~~-----~~~~~~~~   57 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNP-------------------------NEHKGTITWYKDDSKTPVSTE-----QASRIHQH   57 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCG-------------------------GGCSSEEEEECSSTTSBCCCC-----TTSSEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCC-------------------------CCCCceEEEEECCcccccccc-----cceEEecc
Confidence            345667888999999998752                         234678999998765432211     12223322


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      ..     +|.|.+++.+|+|.|+|.+.|..+ ....+.|.|..
T Consensus        58 ~~-----~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          58 KE-----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             TT-----EEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CC-----EEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            22     899999999999999999987643 34455666653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.2e-12  Score=77.33  Aligned_cols=95  Identities=9%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...+....+.+|++++|+|.+.+..+.+                       ...+.|++++..+.....    . 
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p-----------------------~~~v~W~~~~~~l~~~~~----~-   54 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA-----------------------QLTVVLLRGEKELKREPA----V-   54 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGG-----------------------GEEEEEEETTEEEEEEEC----C-
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCC-----------------------ceEEEEcccccccccccc----c-
Confidence            467777777777899999999999997421111                       235889998766432110    0 


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC-CcceeeEEEEEcCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP-MTKQMAFLEVVIPP  137 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~~  137 (238)
                              ......+|.|.....+|+|.|+|+|.|.. .......+++..+.
T Consensus        55 --------~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p~   98 (103)
T d1iama1          55 --------GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPY   98 (103)
T ss_dssp             --------TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCE
T ss_pred             --------cccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCCC
Confidence                    11223389999999999999999998753 33345556665433

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.9e-12  Score=75.48  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEc
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHN   95 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (238)
                      ....+.+|+++.|+|.+.+                           +.|.+.|++++..+....        .++.....
T Consensus         5 ~~~~~~~G~~~~l~C~~~g---------------------------~~~~v~W~~~g~~l~~~~--------~~~~~~~~   49 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS---------------------------NLARVFWKFQNGVLKAES--------PKYGLMGR   49 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC---------------------------TTCEEEEEESSSBCCCCS--------SSBCCTTT
T ss_pred             hheeEeCCCEEEEEEEeec---------------------------cCCceeeecCcccceeee--------eeeeccee
Confidence            4567899999999999853                           355799999877654321        22222111


Q ss_pred             CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          96 DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        96 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                          .+|.|.+++.+|+|.|+|.+.+..
T Consensus        50 ----~~L~I~~v~~~DsG~Y~C~A~n~~   73 (92)
T d1olza1          50 ----KNLLIFNLSEGDSGVYQCLSEERV   73 (92)
T ss_dssp             ----TCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             ----eEEEECCCCHHHCcEEEEEEEEcC
Confidence                179999999999999999998743

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-11  Score=76.14  Aligned_cols=94  Identities=7%  Similarity=0.029  Sum_probs=57.4

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.|.....   ...++...+.|.+.                          +.|.|++.|++++..+.....       
T Consensus         4 pP~it~~~~---~~~~~~~~i~~~v~--------------------------G~P~P~i~W~~~g~~l~~~~~-------   47 (103)
T d1wwbx_           4 APTITFLES---PTSDHHWCIPFTVK--------------------------GNPKPALQWFYNGAILNESKY-------   47 (103)
T ss_dssp             CCCCCCCCC---CCCCCEEEEEEEEE--------------------------CSSCCEEEEEETTEEECCCSS-------
T ss_pred             CCeeEEcCC---CccceeEEEEEEEE--------------------------EeCCCEEEEEECCEEeeeeee-------
Confidence            566543222   23567778889884                          456889999998776532111       


Q ss_pred             ccEEEEE--cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          88 ARLSVTH--NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        88 ~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                      ..+....  .......|.|.+++.+|+|.|+|.+.|..+ .+..+.+.|...|
T Consensus        48 ~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          48 ICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCC
T ss_pred             eeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCC
Confidence            1111111  111234899999999999999999988643 3444445554444

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=75.49  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-ec--CccEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-TN--NARLSV   92 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~--~~~~~~   92 (238)
                      +.+.+..|++++|.|...                           .|.+.+.|++++............ ..  ..+..+
T Consensus         3 ~~v~~~~G~sVtl~c~~~---------------------------~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~   55 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN---------------------------VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL   55 (93)
T ss_dssp             EEEEEETTCCEEECCCCS---------------------------SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE
T ss_pred             cEEEEEECCCEEEEecCC---------------------------CCCcEEEEEEeccccceeeecceeeCCCccceEEE
Confidence            467889999999999753                           235579999987654332221111 11  122222


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEE
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEV  133 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v  133 (238)
                         ...+++|+|.+++.+|+|.|.|.+.+.. ......|+|
T Consensus        56 ---~~~~~sL~I~~l~~~DsG~Y~c~~~n~~-~t~~~~l~V   92 (93)
T d1ccza1          56 ---DTVSGSLTIYNLTSSDEDEYEMESPNIT-DTMKFFLYV   92 (93)
T ss_dssp             ---CTTTCCEEECSCCGGGCEEEEEECTTCC-SCEEEEEEE
T ss_pred             ---cCCeeEEEEEecChhhCEEEEEEEECCC-cEEEEEEEE
Confidence               2345589999999999999999986543 344455555

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.7e-12  Score=74.39  Aligned_cols=80  Identities=25%  Similarity=0.382  Sum_probs=56.5

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCc-eEEEEeCCceeeeeeeeeEeec
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAM-KVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      +|.|...|....+.+|+++.|+|.+...                          |.+ .+.|++++..+..         
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~--------------------------~~~~~~~~~~~~~~~~~---------   45 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNF--------------------------FEVSSTKWFHNGSLSEE---------   45 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC------------------------------CCEEEETTEECSC---------
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeee--------------------------eeecceeeeeeeeeeec---------
Confidence            4788888888899999999999998532                          233 3567776544311         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      .           ..+|.|.+++.+|+|.|.|.+.+. ..+..+.|.|.
T Consensus        46 ~-----------~~~l~i~~v~~~d~G~Y~C~a~~s-~~S~~v~l~V~   81 (82)
T d1f2qa1          46 T-----------NSSLNIVNAKFEDSGEYKCQHQQV-NESEPVYLEVF   81 (82)
T ss_dssp             C-----------SSEEEECSCCGGGCEEEEEECTTS-SCCCCEEEEEE
T ss_pred             c-----------cceeEECCCChhhCCcEEEEecCC-CCcccEEEEEE
Confidence            1           118999999999999999998654 33455666664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-11  Score=75.32  Aligned_cols=80  Identities=16%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCCc
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPTV  225 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~~  225 (238)
                      ....+.+|+.+.|.|.+.+ |.+.+.|++ ++..+....  .............|.|.++..+|+|.|+|.|.|..+   
T Consensus        14 ~~~~v~~G~~v~l~c~v~~-p~~~v~W~k-~g~~i~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~---   86 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEIQMSG--SKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC---   86 (94)
T ss_dssp             SEEEEETTSCEEEEEECSS-SSSCCEEEE-SSSEECCCS--SSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEEE---
T ss_pred             CCEEECcCCeEEEEEEECC-CCceEEEEE-cCccceeee--eeEeeeccCCeEEeecCCCCceecEEEEEEEeeEEE---
Confidence            3456889999999999854 888999999 555443221  011111111234799999999999999999977433   


Q ss_pred             cceEEEEEE
Q psy7941         226 SKRLMLHVH  234 (238)
Q Consensus       226 ~~~~~l~V~  234 (238)
                        +..|.|.
T Consensus        87 --s~~l~V~   93 (94)
T d1pd6a_          87 --STELFVK   93 (94)
T ss_dssp             --CCEEEEE
T ss_pred             --EEEEEEE
Confidence              3356654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.24  E-value=7.2e-12  Score=74.82  Aligned_cols=82  Identities=15%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|....+.+|++++|.|.+....                         +...+.|++++..+..         
T Consensus         3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~-------------------------~~~~~~w~~~g~~~~~---------   48 (85)
T d2fcba1           3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSP-------------------------ESDSIQWFHNGNLIPT---------   48 (85)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEECSSCC-------------------------CTTCCEEEETTEECTT---------
T ss_pred             CCCEEEECCCCeEEcCCCeEEEEEEEeecc-------------------------ceeEEEeecccccccc---------
Confidence            356677888888999999999999985322                         1235788987654311         


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      .           ...|.|.+++.+|+|.|+|.+.+. ..+..+.|.|.
T Consensus        49 ~-----------~~~l~i~~v~~~dsG~Y~C~a~ns-~~S~~v~l~V~   84 (85)
T d2fcba1          49 H-----------TQPSYRFKANNNDSGEYTCQTGQT-SLSDPVHLTVL   84 (85)
T ss_dssp             C-----------CSSEEEEECCGGGCEEEEEECTTS-BCCCCEEEEEE
T ss_pred             c-----------ccceEEeeccccCCcEEEEECCCC-cccccEEEEEE
Confidence            1           117889999999999999998654 33455566654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.8e-12  Score=75.52  Aligned_cols=72  Identities=15%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CceeecCCCcEEEEEEEccccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ....+.+|+.+.|.|.+.+.|.+ .+.|++ ++..+.             ..+..|.|.++..+|+|.|.|.|.|..+  
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~l~i~~v~~~d~G~Y~C~a~~s~~--   72 (82)
T d1f2qa1           9 PWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSE-------------ETNSSLNIVNAKFEDSGEYKCQHQQVNE--   72 (82)
T ss_dssp             SCSEEETTCCEEEECCTTCC----CCEEEE-TTEECS-------------CCSSEEEECSCCGGGCEEEEEECTTSSC--
T ss_pred             CCeEEeCCCeEEEEEEEeeeeeecceeeee-eeeeee-------------cccceeEECCCChhhCCcEEEEecCCCC--
Confidence            33567899999999999998877 456677 544332             1334699999999999999999987654  


Q ss_pred             ccceEEEEEE
Q psy7941         225 VSKRLMLHVH  234 (238)
Q Consensus       225 ~~~~~~l~V~  234 (238)
                       +..+.|.|.
T Consensus        73 -S~~v~l~V~   81 (82)
T d1f2qa1          73 -SEPVYLEVF   81 (82)
T ss_dssp             -CCCEEEEEE
T ss_pred             -cccEEEEEE
Confidence             667778775

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.7e-11  Score=73.57  Aligned_cols=94  Identities=14%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             ccceeccCc-eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-----
Q psy7941           8 EPDFLYPLE-NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-----   81 (238)
Q Consensus         8 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-----   81 (238)
                      .|.|..+.. .+.+..|+++.|.|.+.                          +.|.+.+.|++++.........     
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~--------------------------g~P~p~i~W~~~g~~i~~~~~~~~~~~   54 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVT--------------------------GQLSDIAYWKWNGSVIDEDDPVLGEDY   54 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEE--------------------------ECTTCEEEEEETTEECCTTCSSEEEEE
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEec--------------------------cCCCCeEEEEECCcccccccceeeeee
Confidence            477776654 46788999999999995                          3567789999976553211100     


Q ss_pred             eEe---ecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCCCcceeeEEEEE
Q psy7941          82 HVI---TNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNPMTKQMAFLEVV  134 (238)
Q Consensus        82 ~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~l~v~  134 (238)
                      ...   ........      ..+|.|.+++.+|.| .|+|.|.|..+ ...+.+.+.
T Consensus        55 ~~~~~~~~~~~~~~------~~~L~I~~v~~~D~g~~Y~C~A~N~~G-~~~~~i~L~  104 (107)
T d1iray3          55 YSVENPANKRRSTL------ITVLNISEIESRFYKHPFTCFAKNTHG-IDAAYIQLI  104 (107)
T ss_dssp             EEECCSSCGGGEEE------EEEEEESSCCGGGGSSCEEEEEECSSC-EEEEEEEEE
T ss_pred             eeeccceeeecccc------eEEEEEeecchHHCCcEEEEEEEeCCC-eEEEEEEEE
Confidence            000   00011111      238999999999999 59999988644 334444443

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.6e-11  Score=75.47  Aligned_cols=87  Identities=18%  Similarity=0.415  Sum_probs=61.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee-----eeeee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA-----VLAIH   80 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~-----~~~~~   80 (238)
                      .|.+...|..+.+.+|++++|.|.+.....                          ..+.||+..  ..+     +....
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~--------------------------~~v~Wyrq~~g~~~~~~~~l~~~~   54 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVS--------------------------QGCSWLFQNSSSKLPQPTFVVYMA   54 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCS--------------------------SCEEEEEEESSCSSCCCEEEEEEC
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccC--------------------------CCEEEEEECCCCCcCceEEEEeee
Confidence            377888899999999999999999865332                          348999842  211     11110


Q ss_pred             ----eeE----eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          81 ----EHV----ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        81 ----~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                          ...    .....++.........++|+|.+++.+|+|.|.|.+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          55 SSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             SSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence                001    1123467777666677899999999999999999874

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.7e-10  Score=71.66  Aligned_cols=86  Identities=22%  Similarity=0.441  Sum_probs=60.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eee--eeeeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLA--IHEHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~--~~~~~~   84 (238)
                      +++.|..+.+.+|++++|+|.+.+...                         ...+.||+....  +  +..  ......
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~-------------------------~~~~~Wyrq~~g~~p~~l~~~~~~~~~~   56 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSE-------------------------DLMLNWNRLSPSNQTEKQAAFSNGLSQP   56 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCT-------------------------TCEEEEEEECTTCCEEEEEEEETTEEEE
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCC-------------------------cceEEEEEECCCCCCeeeEEeeeccccc
Confidence            467889999999999999999864322                         224899985321  1  111  111223


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..++||....... ..++|.|.+++.+|+|.|+|.+..
T Consensus        57 ~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          57 VQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             SSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEe
Confidence            3466888776544 568999999999999999998754

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.2e-11  Score=75.03  Aligned_cols=69  Identities=10%  Similarity=0.109  Sum_probs=43.9

Q ss_pred             CCCCceEEEEeCCceeeeeeeeeEeecCccEEEE--E-cCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEc
Q psy7941          60 DSSAMKVAWIKADTKAVLAIHEHVITNNARLSVT--H-NDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVI  135 (238)
Q Consensus        60 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~  135 (238)
                      +.|.|.+.|++++..+...         .++...  . .......|.|.+++.+|+|.|+|.+.|..+ ....+.+.|..
T Consensus        28 G~P~P~v~W~~n~~~i~~~---------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~   98 (105)
T d1wwca_          28 GNPPPTLHWLHNGQPLRES---------KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK   98 (105)
T ss_dssp             CSSCCEEEEEETTEECCCS---------SSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred             EeCCCeEEEEeCccccCCC---------cceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEe
Confidence            4568899999987654321         112111  1 111234799999999999999999988633 34444555554


Q ss_pred             CC
Q psy7941         136 PP  137 (238)
Q Consensus       136 ~~  137 (238)
                      +|
T Consensus        99 ~P  100 (105)
T d1wwca_          99 EP  100 (105)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.15  E-value=2.8e-12  Score=77.32  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             cCCceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCC
Q psy7941         144 TSGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPP  223 (238)
Q Consensus       144 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~  223 (238)
                      ...++.+.+|+++.|.|.+ +.|.|.+.|++ ++..+....   ............|.|.++..+|+|.|+|.|.|..+ 
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k-~g~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~-   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPLTASP---DCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS-   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCS-SSCCCCSSS---SCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC-
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEE-eeeecccce---eEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE-
Confidence            3456789999999999997 56888999999 555443221   11111112234799999999999999999977543 


Q ss_pred             CccceEEEEEE
Q psy7941         224 TVSKRLMLHVH  234 (238)
Q Consensus       224 ~~~~~~~l~V~  234 (238)
                          +..|.|.
T Consensus        81 ----sa~l~V~   87 (89)
T d1tiua_          81 ----AANLKVK   87 (89)
T ss_dssp             ----CEEEEEE
T ss_pred             ----EEEEEEE
Confidence                3456664

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.7e-11  Score=72.83  Aligned_cols=83  Identities=12%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             eeecCCCcEEEEEEEcc-cc--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG-YP--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVPPT  224 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~-~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g~~  224 (238)
                      ..+..|+.++|.|.+.| +|  .+.++|++ ++..+........... .......|.+.....+|.|.|+|.|.|..|..
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~~~~~~~~~~-~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHYETFGKAAPA-PQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEEEEECCSSTTC-TTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEc-CCEEeeecccceEeec-ccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            45778999999999976 54  44899999 6665544332111111 11122346666666677779999999998733


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                       ...+.+.+
T Consensus        90 -~~~~~~~~   97 (106)
T d1zxqa1          90 -GGNIFHKH   97 (106)
T ss_dssp             -TCCEEEEE
T ss_pred             -CCeeEecc
Confidence             44555544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.14  E-value=3.6e-10  Score=71.17  Aligned_cols=86  Identities=20%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeee-eeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLA-IHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~-~~~~~~~   85 (238)
                      +.+.|..+.+.+|++++|.|.+....                          ...+.||+....    .+.. .......
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~--------------------------~~~~~Wyrq~~~~~~~~l~~~~~~~~~~   56 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSP--------------------------FSNLRWYKQDTGRGPVSLTIMTFSENTK   56 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSC--------------------------CSEEEEEEECTTSCCCEEEEECSSCSCE
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCC--------------------------ccCceEEEecCCCceEEeeeeeeeeccc
Confidence            45778899999999999999986432                          224899985421    1111 1111112


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      ...++.... .....++|.|.+++.+|+|.|+|.+...
T Consensus        57 ~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          57 SNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             ccCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            234565544 3347889999999999999999998653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=9.7e-11  Score=72.82  Aligned_cols=79  Identities=13%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSV   92 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~   92 (238)
                      ..+....+.+|++++|+|.+.+...                       .|.+.+.|++++..+.......... ..    
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p-----------------------~p~~~i~W~~~~~~i~~~~~~~~~~-~~----   58 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEP-----------------------LDSLTLFLFRGNETLHYETFGKAAP-AP----   58 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBC-----------------------GGGEEEEEEETTEEEEEEECCSSTT-CT----
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCccc-----------------------CCCceEEEEcCCEEeeecccceEee-cc----
Confidence            4566667889999999999974211                       1245799999877654322111111 11    


Q ss_pred             EEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          93 THNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        93 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                         ......|.+.....+|.|.|+|+|.|.
T Consensus        59 ---~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          59 ---QEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             ---TCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ---cceeEEEEEeeehhcCCcEEEEEEEec
Confidence               112226777777788888999999875

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.6e-11  Score=73.64  Aligned_cols=80  Identities=21%  Similarity=0.413  Sum_probs=52.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee-----cCccE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-----NNARL   90 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-----~~~~~   90 (238)
                      +.+.+.+|++++|+|......                          ...+.|++...............     ..+|+
T Consensus         2 ~~V~~~~G~svtL~C~~s~~~--------------------------~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~   55 (97)
T d2nxyb1           2 KVVLGKKGDTVELTCTASQKK--------------------------SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRA   55 (97)
T ss_dssp             EEEEEETTSCEEECCBCSSSS--------------------------CCCEEEEETTCCEEEEEETTEEEECSSTTGGGE
T ss_pred             cEEEEEcCCcEEEEEEEecCC--------------------------CceEEEEEeCCceeeeecceeeeecCceeccce
Confidence            356788999999999876432                          23489999765433322211111     12344


Q ss_pred             EEEE--cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          91 SVTH--NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        91 ~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....  ...++++|.|.+++.+|+|.|+|.+.+
T Consensus        56 ~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          56 DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             ECCGGGGGGTBCCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEeccCCCCEEEEEECCCChHHCEEEEEEEec
Confidence            3322  233567899999999999999999854

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.9e-11  Score=72.11  Aligned_cols=82  Identities=15%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC------CCC-CcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN------PPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~------~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      .+....|++++|.|... .|.+.+.|+++ +..+.....      ... ........++.|.|.+++.+|+|.|+|.+.|
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQ-KDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEET-TEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEe-ccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            35678899999999864 58889999994 443322111      001 1111112345799999999999999999988


Q ss_pred             CCCCCccceEEEEE
Q psy7941         220 GVPPTVSKRLMLHV  233 (238)
Q Consensus       220 ~~g~~~~~~~~l~V  233 (238)
                      ..+   +..+.|.|
T Consensus        82 ~~~---t~~~~l~V   92 (93)
T d1ccza1          82 ITD---TMKFFLYV   92 (93)
T ss_dssp             CCS---CEEEEEEE
T ss_pred             CCc---EEEEEEEE
Confidence            766   44555655

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3e-10  Score=71.86  Aligned_cols=100  Identities=19%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-----eeeeeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-----AIHEHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~   86 (238)
                      +..|+.+.+.+|++++|.|.+......                       ....+.|++.......     .........
T Consensus         3 it~P~~V~~~~G~svtL~C~y~~~~~~-----------------------~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~   59 (116)
T d1xeda_           3 IFGPEEVNSVEGNSVSITCYYPPTSVN-----------------------RHTRKYWCRQGARGGCITLISSEGYVSSKY   59 (116)
T ss_dssp             SBCCSEEEEETTCCEEEEEECCCCHHH-----------------------HHSCEEEEEC-----CEEEEESSSCBCTTT
T ss_pred             ccCCCEEEEcCCCCEEEEEEECCCCCc-----------------------cceeEEEEEcCCCCCcEEEEECccccccee
Confidence            346788999999999999997421110                       1234789985422111     001111122


Q ss_pred             CccEEEE-EcCCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          87 NARLSVT-HNDANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        87 ~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      .+++.+. ......++|.|.+++.+|+|.|+|.+...+. ....+.|.|.
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          60 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             cCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEE
Confidence            3455554 3445788999999999999999999854322 2333455554

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.11  E-value=2.7e-10  Score=70.54  Aligned_cols=84  Identities=15%  Similarity=0.308  Sum_probs=57.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceeeeee---eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAVLAI---HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~---~~~~~   84 (238)
                      ..++.|..+.+.+|++++|+|.......                          ..+.||++.  .......   .....
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~--------------------------~~~~WYrQ~~g~~~~~~~~~~~~~~~   56 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDID--------------------------DDMNWYQQKPGEPPKFLISEGNTLRP   56 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCC--------------------------ccEEEEeCCCCCceEEEEeccCcccc
Confidence            3457788999999999999998754322                          238999752  2211111   11112


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....||..... ...++|.|.+++.+|+|.|+|...
T Consensus        57 ~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (106)
T d1i8ka_          57 GVPSRFSSSGT-GTDFVFTIENTLSEDVGDYYCLQS   91 (106)
T ss_dssp             TSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCcceeEeCC-CCeeeecccCCccccCEEEeEecC
Confidence            23557776554 357799999999999999999764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=72.26  Aligned_cols=93  Identities=9%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEE
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTH   94 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (238)
                      |..+.+..|..+.+.|..-..                       .+.|.|.+.|++++..+......       +.....
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v-----------------------~G~P~P~v~W~~ng~~l~~~~~~-------~~~~~~   53 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSV-----------------------DGQPAPSLRWLFNGSVLNETSFI-------FTEFLE   53 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEE-----------------------CCSSCCEEEEEETTEECCCCSSE-------EEEEEC
T ss_pred             CCEeEECCCeEEEEEEEEEEE-----------------------EEecCCeEEEEEeeeEccCccce-------eeeeee
Confidence            445566677777776632111                       35668899999987654321110       111111


Q ss_pred             c----CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEEcCC
Q psy7941          95 N----DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVVIPP  137 (238)
Q Consensus        95 ~----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~~  137 (238)
                      .    ......|.|.+++.+|+|.|+|.+.|..+ ....+.+.|..+|
T Consensus        54 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          54 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             CCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred             eeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            0    11234799999999999999999988643 4444555555555

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=99.10  E-value=1.3e-09  Score=68.76  Aligned_cols=87  Identities=21%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee-eeE--
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH-EHV--   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~-~~~--   83 (238)
                      +++.+..+.+.+|++++|.|.++....                         ...+.||+..  ..+  +.... ...  
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~-------------------------~~~i~Wyrq~~g~~~~~l~~~~~~~~~~   57 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYS-------------------------NPDLFWYRIRPDYSFQFVFYGDDSRSEG   57 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSS-------------------------SCCEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCcc-------------------------CCcEEEEEeCCCCceEEeeecccccccc
Confidence            567788899999999999999864321                         2358999842  221  11111 111  


Q ss_pred             -eecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          84 -ITNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        84 -~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                       ....+||...... ...++|+|.+++.+|+|.|.|.+...
T Consensus        58 ~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          58 ADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             CGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             cCccceEEEEEecCceeEEeeeecCccccccccceeeEecC
Confidence             1124588776543 35679999999999999999987543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.09  E-value=3.5e-10  Score=70.15  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=58.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-e-e---eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-A-I---HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~-~---~~~~~   84 (238)
                      ..++.|..+.+.+|++++|.|...+....                          .+.||+....... . .   .....
T Consensus         3 ~~tQsP~~ltv~~G~svtl~C~~s~~~~~--------------------------~~~WYrQ~~g~~~~~i~~~~~~~~~   56 (107)
T d1ospl1           3 QMSQSSSSFSVSLGDRVTITCKASEDIYS--------------------------RLAWYQQKPGNAPRLLISGATSLET   56 (107)
T ss_dssp             CEECCCSEEEECTTCCEEEEEEESSCCTT--------------------------CEEEEEECTTSCCEEEEETTTEECT
T ss_pred             CEEeeCCEEEECCCCCEEEEEecCCCccc--------------------------ccEEEEcCCCccceeEEeeccccCC
Confidence            34577889999999999999998653322                          4899996322111 0 0   11112


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....||..... ...++|.|.+++.+|+|.|.|.+.
T Consensus        57 ~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          57 WVPSRFSGSDS-GKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             TSCTTEEEECS-SSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccccccceecC-CCeEEeEEcccccccCCcEEEeec
Confidence            23468877653 456799999999999999999764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.09  E-value=5.7e-10  Score=70.10  Aligned_cols=85  Identities=16%  Similarity=0.365  Sum_probs=56.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--e-eeeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--L-AIHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~-~~~~~~~~   85 (238)
                      +.+.|..+.+.+|++++|+|.+....                          ...+.|||..  ..+.  . ........
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~--------------------------~~~~~Wyrq~~g~~~~~l~~~~~~~~~~   56 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSA--------------------------IYNLQWFRQDPGKGLTSLLLIQSSQREQ   56 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCC--------------------------EEEEEEEEECTTSCEEEEEEEETTCCEE
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCc--------------------------ccCCeEEEeccccccceeeeeccceecc
Confidence            56778899999999999999986432                          2248899853  2111  1 11111111


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..+++.... .....++|.|.+++.+|+|.|.|.+..
T Consensus        57 ~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             EETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEec
Confidence            233444333 345678999999999999999998853

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-09  Score=67.59  Aligned_cols=85  Identities=19%  Similarity=0.381  Sum_probs=55.0

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----ee-eeeeeEeecCc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VL-AIHEHVITNNA   88 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~-~~~~~~~~~~~   88 (238)
                      .++.+.+.+|++++|+|.+......                        ...+.|+|.....    +. ..........+
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~------------------------~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~   57 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSL------------------------YEKKGWCKEASALVCIRLVTSSKPRTMAWTS   57 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTC------------------------CCEEEEEEEEETTEEEEEEEECSTTCCBCST
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCC------------------------CCEEEEEEeCCCCCcEEeeeccCccccceee
Confidence            3567889999999999997532211                        2247899853211    11 11111112235


Q ss_pred             cEEEEE-cCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          89 RLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        89 ~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      |+.+.. ...+.++|.|.+++.+|+|.|.|.+...
T Consensus        58 r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          58 RFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             eEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            665544 4457889999999999999999998654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.6e-10  Score=68.71  Aligned_cols=72  Identities=19%  Similarity=0.340  Sum_probs=48.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (238)
                      ..+..|..+.|.|.....-.                    ..++|.|.+.|++++..+..        ...++.....  
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~--------------------~~~~p~P~i~W~kdg~~l~~--------~~~~~~~~~~--   58 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFK--------------------NENNELPKLQWYKDCKPLLL--------DNIHFSGVKD--   58 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGC--------------------BTTTBCCCCEEEETTEECCC--------CSSSEEEETT--
T ss_pred             EEEecCCCEEEEcCCccccc--------------------cCCCCCCEEEEEECCccccC--------CCcEEEecCC--
Confidence            45778999999994321000                    13466889999998766432        1222222222  


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                         .|.|.+++.+|+|.|+|.+.+.
T Consensus        59 ---~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2          59 ---RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             ---EEEESSCCGGGCEEEEEEEEEE
T ss_pred             ---EEEEcccccccCcEEEEEEEEC
Confidence               8999999999999999999764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.5e-10  Score=69.59  Aligned_cols=86  Identities=21%  Similarity=0.349  Sum_probs=57.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--ee--eeee--
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VL--AIHE--   81 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~--~~~~--   81 (238)
                      .+...|..+.+.+|++++|.|.+.....                         ...+.||+....  +  ..  ....  
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~-------------------------~~~i~WyrQ~~g~~~~~~~~i~~~~~~   56 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNP-------------------------TSGCSWLFQPRGAAASPTFLLYLSQNK   56 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSC-------------------------CSCEEEEEECSSTTCCCEEEEEESSSC
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcC-------------------------CCCEEEEEECCCCCcEEEEEEecCCCe
Confidence            3567788889999999999999864321                         224899995421  1  11  1100  


Q ss_pred             eE---eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          82 HV---ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        82 ~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..   .....||+..... ..++|.|.+++.+|+|.|+|.+..
T Consensus        57 ~~~~~~~~~~rfs~~~~~-~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          57 PKAAEGLDTQRFSGKRLG-DTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             CEECTTCCTTTEEEEEET-TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEcCCCCCCcEEEEECCC-CChhcEEccCCCCCCEEEeEeEcC
Confidence            00   1124577776654 467999999999999999998754

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.06  E-value=7.1e-10  Score=68.73  Aligned_cols=84  Identities=20%  Similarity=0.321  Sum_probs=57.6

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-~~~~~   84 (238)
                      .++++|..+.+.+|++++|.|........                          .+.||+...  .+  +... .....
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~--------------------------~~~WYrQ~~g~~~~~l~~~~~~~~~   56 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGT--------------------------NVAWFQQKPGQSPKTLIYSASYRYS   56 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTT--------------------------CEEEEEECTTSCCEEEEETTTEECT
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCC--------------------------ceEEEeccCCcccEEEEEecccccc
Confidence            45678889999999999999997543222                          389998532  11  1111 11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....||..... ...+.|.|.+++.+|+|.|+|.+.
T Consensus        57 ~~~~rfs~~~~-~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          57 GVPDRFTGSGS-GTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             TSCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccCCCeeecCC-CCeeeeeechhheecceeEEEeEC
Confidence            22457777654 457899999999999999999763

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.06  E-value=1.7e-09  Score=68.34  Aligned_cols=85  Identities=18%  Similarity=0.321  Sum_probs=59.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHV   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~   83 (238)
                      +.+.|..+.+.+|+++.|+|...+...                          ..+.||++...  +  +....   ...
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~--------------------------~~~~WYrQ~~g~~~~~l~~~~~~~~~~   57 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNI--------------------------HTMFWYRQFPKQSLMLMATSHQGFNAI   57 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCC--------------------------SEEEEEEECTTSCEEEEEEEETTSCCE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcc--------------------------cEEEEEEEcccccceeeeeccccccce
Confidence            567788889999999999999865322                          34899996321  1  11110   011


Q ss_pred             e---ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 I---TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 ~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .   ....+|.........+.|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          58 YEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             ECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eccccccccceeeccccccccccccccccccCceEEEEEec
Confidence            1   1245777776666778999999999999999998743

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.05  E-value=1.2e-09  Score=67.73  Aligned_cols=84  Identities=23%  Similarity=0.428  Sum_probs=57.7

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--eeeee--e-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--AVLAI--H-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~~~~--~-~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|........                          .+.||+....  +....  . ....
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~--------------------------~~~WYrq~~g~~~~~l~~~~~~~~~   56 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGN--------------------------NLHWYQQKSHESPRLLIKYASQSIS   56 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT--------------------------CEEEEEECTTSCCEEEEETTTEECT
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCc--------------------------ceEEEEeCCCCccEEeeecccCCCc
Confidence            34677889999999999999997643322                          4899986421  11111  0 1111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....+|+.... ...++|.|.+++.+|+|.|+|...
T Consensus        57 ~~~~~fs~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          57 GIPSRFSGSGS-GTDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             TSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             eeCCcceeccc-CCEEEEEEcccCcCCCEEEEEEcC
Confidence            22457877654 456899999999999999999764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.8e-11  Score=75.58  Aligned_cols=94  Identities=16%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.| ..+..+.+.+|+++.|.|.+...                         .|.+.+.|++++..+.....       
T Consensus         7 Pp~i-~~~~~~~~~~G~~~~l~C~v~~~-------------------------~p~~~v~W~~~~~~i~~~~~-------   53 (115)
T d2crya1           7 PPII-SSTQTQHALHGEKGQIKCFIRST-------------------------PPPDRIAWSWKENVLESGTS-------   53 (115)
T ss_dssp             SCCE-EEECCCCCCTTSCCCCCEEECCS-------------------------SCCSEEEEESSSCEECSEEE-------
T ss_pred             CCEE-ecCCCEEEecCCEEEEEEEeecC-------------------------CCeeEEEEeeeeeeEeeeee-------
Confidence            4544 45677888999999999998631                         23557999998776543221       


Q ss_pred             ccEEEEE--c-CCCeEEEEEcccCccc-CeEEEEEEecCCC-cceeeEEEEE
Q psy7941          88 ARLSVTH--N-DANTWTLNIRSVRRED-RGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        88 ~~~~~~~--~-~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      .++....  . ......|.|.++..+| +|.|+|.+.|..+ ....+.|.|.
T Consensus        54 ~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          54 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             eeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            1222111  1 1122379999999999 6999999988644 3333344443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.2e-10  Score=71.73  Aligned_cols=91  Identities=21%  Similarity=0.323  Sum_probs=56.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee----eee--ee--Eee
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL----AIH--EH--VIT   85 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~----~~~--~~--~~~   85 (238)
                      .+..+.|.+|+++.|+|.++......                   .......+.|++.......    ...  ..  ...
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~-------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~   67 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQ-------------------TDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEE   67 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CT-------------------TTTSCCEEEEEECC-----CCCSEESCTTSCCCTT
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCC-------------------cccccEEEEeeEecCCCceEEEEeeCCCCceeccc
Confidence            46788999999999999986432211                   1122346889987433211    110  00  011


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ..+|+.+... ..++++|.|.+++.+|+|.|.|++..+.
T Consensus        68 ~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          68 TRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             TTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             cceEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeCC
Confidence            2346665543 3367899999999999999999996543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.5e-10  Score=69.76  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             eeecCCCcEEEEEEEcc--ccCCeEEEEeCCCeeeE-eecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         148 MMVPEGGSAKLVCKAKG--YPTPKITWRREDNKEII-VRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~~~~~-~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      +....|+++.|.|....  .....|.|+++ +..+. ....   ...........+++|.|.+++.+|+|.|+|.+.+..
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~-~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERG-STLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEET-TEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeecc-ccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            45677999999996322  23347999994 44332 2211   111123334456789999999999999999999999


Q ss_pred             CCC-ccceEEEEEE
Q psy7941         222 PPT-VSKRLMLHVH  234 (238)
Q Consensus       222 g~~-~~~~~~l~V~  234 (238)
                      |.. ..+++.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            853 3678888876

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.03  E-value=3e-09  Score=65.95  Aligned_cols=83  Identities=19%  Similarity=0.348  Sum_probs=56.6

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~-~~~~~~   85 (238)
                      .++.|..+.+.+|++++|.|.......                          ..+.||+...  ...  ... ......
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~~   57 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVG--------------------------TYVSWYQQKPGQSPVLLIYGASNRYTG   57 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcC--------------------------CceEEEEcccCCCCEEEEEecccccCC
Confidence            457788999999999999999864322                          2489998532  111  111 111111


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++..... ...+.|.|.+++.+|+|.|+|.+.
T Consensus        58 ~~~~~~~~~~-~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          58 VPDRFTGSGS-ATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             CCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ccceEEeecc-CCeeecEEHhheecCCceEEEEec
Confidence            2456766543 457799999999999999999864

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.03  E-value=9.7e-10  Score=68.31  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|...+...                          ..+.||++....    +... .....
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~--------------------------~~i~WYrQ~pg~~p~~li~~~~~~~~   56 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIY--------------------------SYLAWYQQKQGKSPQFLVYNAKTLGE   56 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcC--------------------------cccceeeccccCCCeEEEEeeccccC
Confidence            3457788999999999999999864322                          238999953211    1111 11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....+|.... ....+.|.|.+++.+|+|.|+|.+.
T Consensus        57 ~~~~~fs~~~-~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          57 GVPSRFSGSG-SGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             TCCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CcCCCEEEec-cCCEEEEEEccccccCCeeEEEeee
Confidence            2245777654 3567799999999999999999874

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.03  E-value=2e-09  Score=67.31  Aligned_cols=85  Identities=19%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-~~~~~~   85 (238)
                      +.+.|..+.+.+|++++|+|..++...                          ..+.||+...  ..  +... ......
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~~   56 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMF--------------------------DYFLWYKKYPAEGPTFLISISSIKDKN   56 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTC--------------------------CEEEEEEECTTSCCEEEEEEETTCSEE
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCC--------------------------CeEEEEEECCCCcceeeeeeeceeccc
Confidence            467788899999999999999765332                          2488998531  11  1111 111111


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...++.... .....++|.|.+++.+|+|.|+|.+..
T Consensus        57 ~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          57 ADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             cCCcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            234565543 344688999999999999999998753

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.03  E-value=5.4e-09  Score=65.63  Aligned_cols=86  Identities=14%  Similarity=0.315  Sum_probs=55.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--eeee--eeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LAIH--EHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~~~--~~~~   84 (238)
                      +...+..+.+.+|++++|.|.......                         ...+.||+..  ..+.  ....  ....
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~-------------------------~~~~~Wyrq~~g~~~~~l~~~~~~~~~~   57 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDT-------------------------TYYLFWYKQPPSGELVFLIRRNSFDEQN   57 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCS-------------------------SCEEEEEEECTTCCCEEEEEEETTSCSE
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCc-------------------------CccEEEEEccccCcceEeeeEeeeeecC
Confidence            467788899999999999999764322                         2247899853  2211  1111  0001


Q ss_pred             ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....+++.... ....++|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   95 (114)
T d2ak4d1          58 EISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSG   95 (114)
T ss_dssp             EEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCcceEEEEcCCCCEEEEeecccccccCCCceEeCCC
Confidence            11223444332 34578999999999999999998744

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=99.02  E-value=9.3e-10  Score=69.27  Aligned_cols=85  Identities=14%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeee-eeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLA-IHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~-~~~~~~~   85 (238)
                      +.+++..+.+.+|++++|+|.++...                          ...+.|||+...    .+.. .......
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~--------------------------~~~i~Wyrq~~g~~~~~l~~~~~~~~~~   57 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTY--------------------------SPFLFWYVQHLNEAPKLLLKSFTDNKRP   57 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSS--------------------------SCCEEEEEECTTSCCEEEEESCSSTTCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCC--------------------------cCCeeEEEeCCCCceeeeeeeeeccCCc
Confidence            45778889999999999999987532                          234899986321    1111 1111111


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...++..... ....+.|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             CCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             ceeeeeeeccCCCCeEEeeccccccccCccceEEEEc
Confidence            2345555432 23566899999999999999998744

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=1e-09  Score=67.84  Aligned_cols=83  Identities=16%  Similarity=0.265  Sum_probs=55.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ceee--ee-eeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKAV--LA-IHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~~--~~-~~~~~~~   85 (238)
                      +++.|..+.+.+|++++|+|........                          .+.||+..  ..+.  .. .......
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~--------------------------~~~Wyrq~~g~~~~~~~~~~~~~~~~   57 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISG--------------------------YLSWLQQKPDGTIKRLIYDATKLDSG   57 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT--------------------------CEEEEEECTTSCEEEEEETTTEECTT
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCC--------------------------CEEEEEcCCCCcceeEEeccccccCC
Confidence            4577889999999999999997643322                          38999853  2211  11 1111122


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++..... ...+.|.|.+++.+|+|.|.|.+.
T Consensus        58 ~~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCa~~   91 (107)
T d1c5cl1          58 APKRFSGSRS-GSDYSLTISSLESEDFADYYCLQY   91 (107)
T ss_dssp             SCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCceEeccc-CCEEEEEEhhhcccCCeEEEEecC
Confidence            3446655543 356799999999999999999764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=1e-09  Score=67.87  Aligned_cols=84  Identities=12%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee-e-eee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA-V-LAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~-~-~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|........                          .+.||+...  .. . ... .....
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~--------------------------~~~WYrq~~g~~~~~~~~~~~~~~~   55 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKK--------------------------YIGWYQHKPGKQPRLLIHYTSTLLP   55 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT--------------------------CEEEEEECTTSCEEEEEETTTEECT
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCC--------------------------CeEEEECCCCCcEEEEEEccccccC
Confidence            34677889999999999999997543322                          389998532  11 1 111 01111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....++..... ...++|.|.+++.+|+|.|+|.+.
T Consensus        56 ~~~~~~~~~~s-~~~~~L~I~~~~~~DsA~YyCa~~   90 (106)
T d1a0ql1          56 GIPSRFRGSGS-GRDYSFSISNLEPEDIATYYCLQY   90 (106)
T ss_dssp             TCCTTEEEEEE-TTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             CCCcceEeecC-CCEeeeEehhhcccCCEeEEEEEe
Confidence            22456766543 456799999999999999999864

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.01  E-value=1.4e-09  Score=67.36  Aligned_cols=84  Identities=18%  Similarity=0.300  Sum_probs=56.8

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eee-eeeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLA-IHEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~-~~~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|..+.....                          .+.||+.....    +.. ......
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~--------------------------~~~WYrq~pg~~~~~l~~~~~~~~~   56 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINS--------------------------YLSWFQQKPGKSPKTLIYRANRLVD   56 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTT--------------------------CEEEEEECTTSCCEEEEETTTEECT
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCC--------------------------ccceeEeccccCeEEEEEecccccc
Confidence            34577889999999999999987643322                          38899863211    111 011111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....+|..... ...++|.|.+++.+|+|.|+|...
T Consensus        57 ~~~~rf~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1d5il1          57 GVPSRFSGSGS-GQDYSLTISSLEYEDMGIYYCLQY   91 (107)
T ss_dssp             TSCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CcCCceeeccc-CCEEEccccccCCcCCEEEEeeec
Confidence            22457776654 456799999999999999999763

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.01  E-value=8.2e-10  Score=68.35  Aligned_cols=83  Identities=17%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|........                          .+.||+....    .+... ......
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~--------------------------~~~WYrq~~g~~p~~l~~~~~~~~~~   56 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIET--------------------------WLAWYQQKPGKAPKLLIYKASTLKTG   56 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTT--------------------------CEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCC--------------------------cEEEEecCCCCCCEEEEEccccCCCC
Confidence            3577889999999999999998643322                          3899986321    11111 111122


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...+|..... ...+.|.|.+++.+|+|.|+|.+.
T Consensus        57 ~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1op3k1          57 VPSRFSGSGS-GTEFTLTISGLQFDDFATYHCQHY   90 (106)
T ss_dssp             SCTTEEEEEE-TTEEEEEEESCCGGGCSEEEEEEE
T ss_pred             cCCceeeecc-CCEEEEEEccccccCCCcEeeeeC
Confidence            3457776653 456799999999999999999764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2.1e-09  Score=68.20  Aligned_cols=89  Identities=16%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----e-eeee-eee-Ee
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----A-VLAI-HEH-VI   84 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~-~~~~-~~~-~~   84 (238)
                      ...+..+.+..|++++|+|.+......                      .....+.|++....    . .... ... ..
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~   60 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWV----------------------SDDISFTWRYQPEGGRDAISIFHYAKGQPYI   60 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCC----------------------CSCCEEEEEEEETTCCCCEEEEEEETTEEEE
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCC----------------------CccEEEEEEEecccCCceeEEEEEeeccccc
Confidence            456788999999999999998643211                      12346899874211    1 1111 011 11


Q ss_pred             e----cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          85 T----NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        85 ~----~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .    ..+|+.+... ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  103 (119)
T d1neua_          61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNP  103 (119)
T ss_dssp             CSSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC-
T ss_pred             ccCccceeEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEEC
Confidence            1    1346665432 335679999999999999999999764

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.1e-09  Score=66.84  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=55.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~   94 (238)
                      ..+....|++++|.|......                        .....|.|++++........ ......+.+..+..
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~------------------------~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~   58 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMT------------------------DDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA   58 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCC------------------------TTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT
T ss_pred             cEEEEecCCCEEEECCCCCCc------------------------cchheeeeeccccceeEEccCCccccCCCeEEECC
Confidence            456788899999999632111                        11235999997655432211 11122334444332


Q ss_pred             cCCCeEEEEEcccCcccCeEEEEEEecCCCc---ceeeEEEEE
Q psy7941          95 NDANTWTLNIRSVRREDRGYYMCQVNTNPMT---KQMAFLEVV  134 (238)
Q Consensus        95 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~l~v~  134 (238)
                          +.+|.|.+++.+|+|.|+|.+.+....   .....|.|+
T Consensus        59 ----ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          59 ----NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             ----TSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             ----CccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence                238999999999999999999764332   334445553

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=99.00  E-value=7.2e-09  Score=64.52  Aligned_cols=80  Identities=23%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeee-eeeEeecCcc
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAI-HEHVITNNAR   89 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~-~~~~~~~~~~   89 (238)
                      |.++.+.+|++++|.|.++...+.                         ..+.||+...  .  .+... .........+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~-------------------------~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~   59 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGN-------------------------EYVYWYRQIHSQGPQYIIHGLKNNETNEMAS   59 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTT-------------------------EEEEEEEECTTSCCEEEEEESSSCEECSSCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCC-------------------------CeEEEEEECCCCccEEeeeeeceecccccce
Confidence            457899999999999997543222                         2488998532  1  11111 1111222333


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +... .....++|.|.+++.+|+|.|+|.+.
T Consensus        60 ~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          60 LIIT-EDRKSSTLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             EEEC-TTCSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             eeec-ccCCeeeehhcccccCCceEEEEEEe
Confidence            3332 33467899999999999999999874

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=99.00  E-value=1.3e-09  Score=67.60  Aligned_cols=84  Identities=19%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~   84 (238)
                      ..++.|..+.+.+|++++|+|...+...                          ..+.||+....    .+... .....
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~   56 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVT--------------------------SALAWYRQKPGSPPQLLIYDASSLES   56 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCC--------------------------ccEEEEeccCCccceEEEeecccccC
Confidence            3467789999999999999999864322                          24889985321    11111 11112


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....++.... ....+.|+|.+++.+|+|.|.|...
T Consensus        57 ~~~~~~~~~~-~~~~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          57 GVPSRFSGSG-SGTEFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             TSCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCcceEEec-cCCEEEEEeccceeCcCceEEEEEC
Confidence            2345676654 3467799999999999999999753

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.99  E-value=3.5e-09  Score=65.55  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=55.5

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-eeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-EHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~~~~   84 (238)
                      .+++.|..+.+.+|+++.|.|...+...                          ..+.||+.....    +.... ....
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~   56 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSIS--------------------------KSLAWYQEKPGKTNNLLIYSGSTLQS   56 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcC--------------------------CceEEEEccccCCCeEEEEeeccccC
Confidence            3467788899999999999999865322                          248999863211    11111 1111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....++.... ....++|.|.+++.+|+|.|.|...
T Consensus        57 ~~~~~~~~~~-~~~~~~L~i~~l~~~Dsa~YyCA~~   91 (108)
T d1jhll_          57 GIPSRFSGSG-SGTDFTLTISSLEPEDFAMYICQQH   91 (108)
T ss_dssp             TCCTTEEEEE-SSSEEEEEECSCCTTCCSEEEEEEC
T ss_pred             CccccccccC-CCCEEEeEeeeeEeccceEEEEeeC
Confidence            1233455443 3456799999999999999999764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.98  E-value=2.7e-09  Score=66.84  Aligned_cols=83  Identities=23%  Similarity=0.368  Sum_probs=56.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +.+.|..+.+.+|++++|+|.+++..-                        ....+.||+.......   ...+...+++
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~------------------------~~~~~~Wyrq~~g~~~---~~~~~~~~~~   55 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASF------------------------ELKDTGWYRTKLGSTN---EQSISIGGRY   55 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSS------------------------CCCEEEEEEEETTCCC---CEECCCBTTE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcc------------------------cCCccceeeeeccccc---eeeeeecccc
Confidence            457788999999999999999864211                        1235899985321110   1112234566


Q ss_pred             EEEEc-CCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          91 SVTHN-DANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        91 ~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..... ....++|+|.+++.+|+|.|+|.+.
T Consensus        56 ~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   86 (113)
T d1vesa_          56 VETVNKGSKSFSLRISDLRVEDSGTYKCQAF   86 (113)
T ss_dssp             EEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeECCCCceeeeecccccCCcceEeeeee
Confidence            55543 3456799999999999999999884

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.97  E-value=4e-09  Score=66.37  Aligned_cols=86  Identities=14%  Similarity=0.283  Sum_probs=56.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eeee--eeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAIH--EHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~~--~~~~   84 (238)
                      +.+.+..+.+.+|++++|.|.+.....                         ...+.||+...  .+.  ....  ....
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~-------------------------~~~i~WYrQ~~g~~~~~l~~~~~~~~~~   56 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDS-------------------------SYFLFWYKQTASGEIVFLIRQDSYKKEN   56 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCS-------------------------SCEEEEEEECTTCCEEEEEEEETTCCSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCC-------------------------CCCCEEEEeCCCCCCEEEEEEecceeec
Confidence            567788999999999999999864322                         23488998532  111  1111  0011


Q ss_pred             ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...++++.... ....++|.|.+++.+|+|.|.|.+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          57 ATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRG   94 (115)
T ss_dssp             CEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccCCceEEEEeccCCEEEEEECCCCccccccccceeec
Confidence            11245655543 33577999999999999999998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.97  E-value=2.9e-09  Score=66.43  Aligned_cols=84  Identities=21%  Similarity=0.361  Sum_probs=57.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      +.+.|..+.+.+|++++|.|.+++..-                        ....+.||++......   ...+...+++
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~------------------------~~~~i~WYrq~~g~~~---~~~~~~~gr~   54 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASY------------------------ALGSTCWYRKKSGEGN---EESISKGGRY   54 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSS------------------------CCCCEEEEEEETTSCC---CEECCCBTTE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcc------------------------cCCceEEEEeecccee---eeeeccCCcE
Confidence            456788899999999999999854211                        1235899985311100   1122334566


Q ss_pred             EEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          91 SVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        91 ~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..... ....++|.|.+++.+|+|.|+|.+..
T Consensus        55 ~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          55 VETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             EEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             eeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            55433 34578999999999999999998743

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.96  E-value=1.9e-09  Score=67.31  Aligned_cols=84  Identities=17%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~~-~~~~~   85 (238)
                      +.+.|..+.+.+|++++|+|..++...                          ..+.||+...  ...  .... .....
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~--------------------------~~~~WYrq~pg~~~~~l~~~~~~~~~~   55 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAF--------------------------DYFPWYQQFPGEGPALLISILSVSDKK   55 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTE--------------------------EEEEEEEECTTSCCEEEEEEETTCSEE
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCC--------------------------cEEEEEeeccccceeeeeeeccccccc
Confidence            356788899999999999999864322                          2389998631  111  1110 11111


Q ss_pred             cCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++.... .....++|.|.+++.+|+|.|.|.+.
T Consensus        56 ~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          56 EDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             EETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred             cccceeEEECCCCCeeEeEeccCCCCCceeEeeeec
Confidence            122333332 23356799999999999999999764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.95  E-value=7.9e-09  Score=64.68  Aligned_cols=84  Identities=19%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eee--eeeeeeEeec
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAV--LAIHEHVITN   86 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~--~~~~~~~~~~   86 (238)
                      +.+.|..+.+.+|++++|.|..+..                           ...+.||+...  .+.  ..........
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~---------------------------~~~~~WYrQ~~g~~~~~l~~~~~~~~~~   56 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT---------------------------MRSVQWFRQNSRGSLISLFYLASGTKEN   56 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC---------------------------CSEEEEEEECTTSCEEEEEEESSSEEEE
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC---------------------------CccceEEEeecccceEEEEEeeeeeccc
Confidence            4567889999999999999997531                           12489999532  111  1111111111


Q ss_pred             Cc-cEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NA-RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .. +..........++|.|.+++.+|+|.|.|.+..
T Consensus        57 ~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (113)
T d1h5ba_          57 GRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEA   92 (113)
T ss_dssp             TTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccceEEeecCCceeEEEECCCCHhHCEEEEEEecC
Confidence            11 111122233567899999999999999998754

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=3.2e-09  Score=68.00  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             eeecCCCcEEEEEEEccc---cCCeEEEEeCCCeee--EeecC--------CCCCcceEEE------eeceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGY---PTPKITWRREDNKEI--IVRSN--------PPSSQKVFSV------ESEVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~~~--~~~~~--------~~~~~~~~~~------~~~~l~i~~~~~~  208 (238)
                      +.+..|+++.|.|.+...   ....+.|++.+....  .....        .....+....      .+..|.|.+++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            667889999999997542   233699998543211  11100        0111111111      1347999999999


Q ss_pred             CCeEEEEEeeeCCCCCccceEEEEEEeec
Q psy7941         209 EMGAYQCIAANGVPPTVSKRLMLHVHCTY  237 (238)
Q Consensus       209 d~G~y~C~~~n~~g~~~~~~~~l~V~~~p  237 (238)
                      |+|.|+|.+.+..+ ..++.+.|.|..|+
T Consensus        92 D~G~Y~C~v~~~~~-~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          92 DEGGYTCFFRDHSY-QEEAAVELKVEDPF  119 (126)
T ss_dssp             GCEEEEEEEEETTE-EEEEEEEEEEECTT
T ss_pred             HCeEEEEEEEECCC-EEEEEEEEEEeCCC
Confidence            99999999999877 44788899998765

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.95  E-value=8.5e-11  Score=73.65  Aligned_cols=77  Identities=19%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHND   96 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (238)
                      ..++.+|+++.|.|.+.                         .+.|.|.+.|+|++.........  .....++..... 
T Consensus        11 ~~t~~EG~~~~L~C~v~-------------------------~G~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~-   62 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLP-------------------------NAYPKPLITWKKRLSGADPNADV--TDFDRRITAGPD-   62 (111)
T ss_dssp             EECCBTTEEEEECCCCC-------------------------EEESCCEEEEEEEETTSCGGGCC--CCCCTTEEECTT-
T ss_pred             cccccCCCeEEEEEEcc-------------------------cCCCCCEEEEEeCCccccccccc--eeeeeeeccccc-
Confidence            44577899999999862                         24567889999976553221110  001122222211 


Q ss_pred             CCeEEEEEcccCcccCe---EEEEEEecCCC
Q psy7941          97 ANTWTLNIRSVRREDRG---YYMCQVNTNPM  124 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~  124 (238)
                         .+|.|.+++.+|+|   .|.|.+.|...
T Consensus        63 ---~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          63 ---GNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             ---SCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             ---cccEEeeeEeeccCCceEEEEEEEeCCC
Confidence               27999999999877   79999988644

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.95  E-value=7.6e-09  Score=64.68  Aligned_cols=83  Identities=17%  Similarity=0.289  Sum_probs=56.2

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-ee----
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EH----   82 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~----   82 (238)
                      .+.|..+.+.+|++++|.|....  +                         ...+.||++...    .+.... ..    
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~-------------------------~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~   55 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS--G-------------------------HVSLFWYQQALGQGPEFLTYFQNEAQLDK   55 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT--T-------------------------CCEEEEEEECTTSCCEEEEEEETTEEEEC
T ss_pred             EECCCeEEECCCCCEEEEEEECC--C-------------------------CCEEEeeeeecccceEEeeeeccCccccc
Confidence            56788889999999999998532  1                         124899995321    111111 10    


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .....+++.........++|.|.+++.+|+|.|+|.+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          56 SGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             TTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEeeeC
Confidence            012245666666566678999999999999999998743

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.94  E-value=3.1e-09  Score=66.09  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=57.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|+++.|.|...+...                          ..+.||+....    .+... .....
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~--------------------------~~~~WYrq~~g~~p~~l~~~~~~~~~   58 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQASQDII--------------------------KYLNWYQQKPGKAPKLLIYEASNLQA   58 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             eEEeeCCEEEECCCCCEEEEEEecCCCC--------------------------CcceEeeeccCCCCEEEEEecccCCC
Confidence            4457788999999999999999864322                          23889985321    11111 11112


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....+|..... ...+.|.|.+++.+|+|.|.|.+.
T Consensus        59 ~~~~~fs~~~~-~~~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          59 GVPSRFSGSGS-GTDYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             TCCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCCCEEeeCC-CCEeEEEEeeceeCcCceEEEeec
Confidence            23467776654 356799999999999999999764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.94  E-value=7.2e-09  Score=64.66  Aligned_cols=82  Identities=20%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeeeee-eeE---
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLAIH-EHV---   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~~~-~~~---   83 (238)
                      .+.|..+.+.+|++++|+|....  +                         ...+.||+...  .  .+.... ...   
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~-------------------------~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~   55 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS--G-------------------------HDNLYWYRRVMGKEIKFLLHFVKESKQDE   55 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT--T-------------------------CSEEEEEEEETTSCEEEEEEEETTEEEEC
T ss_pred             EECCCEEEECCCCCEEEEEEECC--C-------------------------CceEEEEEEccCCcceecceecccCcccc
Confidence            56788889999999999998532  1                         12489998632  1  111111 011   


Q ss_pred             -eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          84 -ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                       .....++.........++|.|.+++.+|+|.|.|.+.
T Consensus        56 ~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          56 SGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             TTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEeee
Confidence             1124567666655567899999999999999999764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=67.26  Aligned_cols=81  Identities=26%  Similarity=0.391  Sum_probs=52.7

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-e----eeeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-I----HEHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~----~~~~~~~   86 (238)
                      ++++ .+.+.+|++++|+|...+...                          ..+.||+........ .    .......
T Consensus         3 tQp~-sl~~~~G~svtl~C~~~~~~~--------------------------~~~~WYrQ~pg~~~~~~~~~~~~~~~~~   55 (103)
T d8faba1           3 TQPP-SVSVSPGQTARITCSANALPN--------------------------QYAYWYQQKPGRAPVMVIYKDTQRPSGI   55 (103)
T ss_dssp             BCCS-EEEECTTSCEEEEEECTTGGG--------------------------SCCEEEEECTTSCCEEEEBTTTBCCTTS
T ss_pred             CCCC-eEEECCCCCEEEEEEeCCCCC--------------------------CCEEEEEccCCCceEEEeeeeccccccc
Confidence            4554 788999999999998754222                          248999864221110 0    0111112


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..++..... ...+.|.|.+++.+|+|.|.|.+.
T Consensus        56 ~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCA~~   88 (103)
T d8faba1          56 PQRFSSSTS-GTTVTLTISGVQAEDEADYYCQAW   88 (103)
T ss_dssp             CTTEEEEEE-TTEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCcEEECCC-CCccCceEcCcchhHCceEEeeec
Confidence            345655443 456799999999999999999764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=3.2e-09  Score=65.66  Aligned_cols=81  Identities=20%  Similarity=0.383  Sum_probs=54.2

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-eeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-EHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-~~~~~~   86 (238)
                      +++ ..+.+.+|++++|+|..++...                          ..+.||+....  +  +.... ......
T Consensus         5 tQp-~s~~~~~G~svtL~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~~~   57 (106)
T d1lk3l1           5 TQP-PALTVSPGEKLTISCKASESVT--------------------------SRMHWYQQKPGQQPKLLIYKASNLASGV   57 (106)
T ss_dssp             ECC-SEEEECTTSCEEEEEEESSCCT--------------------------TCEEEEEECTTSCCEEEEETTTEECTTC
T ss_pred             eeC-CeEEECCCCCEEEEEEeCCCCC--------------------------ccEEEEecCCCCCcEEEEEecccccCCc
Confidence            444 4789999999999999864322                          24899986321  1  11111 111123


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..+|..... ...+.|.|.+++.+|+|.|+|...
T Consensus        58 ~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          58 PARFSGSGS-GTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             CTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCceeeecC-CCEEEeEECCcChhhCCCcccccc
Confidence            457777654 356799999999999999999753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.93  E-value=1e-08  Score=61.83  Aligned_cols=73  Identities=21%  Similarity=0.398  Sum_probs=49.0

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeeeEeecCccEEEEE-cCC
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEHVITNNARLSVTH-NDA   97 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~   97 (238)
                      |++++|+|...+...                          ..+.||+....    .+...........+||.... ...
T Consensus         1 G~~vtl~C~~~~~~~--------------------------~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~   54 (94)
T d2gj6d1           1 GAIASLNCTYSDRGS--------------------------QSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKAS   54 (94)
T ss_dssp             TSCEEEEEEECCTTC--------------------------CEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTT
T ss_pred             CccEEEEEEEccccC--------------------------CcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCC
Confidence            789999999865332                          34899985321    12222222233356777654 344


Q ss_pred             CeEEEEEcccCcccCeEEEEEEec
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..++|.|.+++.+|+|.|.|.+..
T Consensus        55 ~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          55 QYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CEEeEEeeccccCcCccceeeEec
Confidence            568999999999999999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.93  E-value=3.1e-09  Score=66.85  Aligned_cols=85  Identities=13%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeee--eeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIH--EHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~--~~~~   84 (238)
                      +++.+..+.+.+|++++|+|..+....                          ..+.||+...    ..+....  ....
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~--------------------------~~i~WYrQ~pg~~~~~l~~~~~~~~~~   56 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVP--------------------------PYLFWYVQYPNQGLQLLLKYTSAATLV   56 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSC--------------------------CEEEEEEECTTSCCEEEEEECSSCSEE
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCc--------------------------eeEEEEEccCCCcceeeeEEeeccccc
Confidence            467788999999999999999865322                          2489998531    1111111  1111


Q ss_pred             ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....++..... ....+.|.|.+++.+|+|.|.|.+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          57 KGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSE   94 (115)
T ss_dssp             ECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEES
T ss_pred             ccCCCCEEEECCCCCEEEEeeccccccCCccceeeecC
Confidence            22334544432 23456899999999999999998854

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.93  E-value=3.1e-09  Score=66.04  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=56.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee-eeee----eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA-VLAI----HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~~~----~~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|.+....+                         ...+.||+..... ....    ......
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~-------------------------~~~~~WYrq~~g~~~~~l~~~~~~~~~~   58 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVG-------------------------NNKLAWYQQRPGQAPRLLIYGASSRPSG   58 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCG-------------------------GGCEEEEEECTTSCCEEEEBTTTBCCTT
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCC-------------------------CccceeEeccccCCCEEEEeeecccccC
Confidence            457788999999999999999754322                         2248899864221 1111    111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++..... ...+.|.|.+++.+|+|.|.|.+.
T Consensus        59 ~~~~~s~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          59 VADRFSGSGS-GTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             SCTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CccceeeecC-CCEEEEEehHheecccEEEeeecC
Confidence            2456766554 346799999999999999999763

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.1e-09  Score=70.10  Aligned_cols=103  Identities=18%  Similarity=0.369  Sum_probs=61.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee------e-eeeee
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV------L-AIHEH   82 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~------~-~~~~~   82 (238)
                      .++.+...+.+.+|+++.|+|.+......                      .....+.|++......      . .....
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~----------------------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~   63 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPED----------------------QGPLDIEWLISPADNQKVDQVIILYSGDK   63 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTC----------------------CSCEEEEEEEEETTSSCCSEEEEEEETTE
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCC----------------------CCcEEEEEEEeCCCCcceeEEEEEEeCCc
Confidence            44555567899999999999998632111                      1134588987422110      1 11111


Q ss_pred             Ee-----ecCccEEEEEc--CCCeEEEEEcccCcccCeEEEEEEecCCC-cceeeEEEEE
Q psy7941          83 VI-----TNNARLSVTHN--DANTWTLNIRSVRREDRGYYMCQVNTNPM-TKQMAFLEVV  134 (238)
Q Consensus        83 ~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~l~v~  134 (238)
                      ..     ...+|+.+...  ..+.++|.|.+++.+|+|.|.|.+.+... ....+.|.|.
T Consensus        64 ~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          64 IYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccccCcccccceEEEccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            11     11345555432  23567899999999999999999976432 2334445554

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.93  E-value=1.9e-09  Score=67.89  Aligned_cols=84  Identities=18%  Similarity=0.313  Sum_probs=54.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--ce--eeeee--eeeEe
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TK--AVLAI--HEHVI   84 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~--~~~~~--~~~~~   84 (238)
                      +++++..+.+.+|++++|.|...+....                          .+.||+..  ..  .+...  .....
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~--------------------------~~~Wyrq~pg~~~~~i~~~~~~~~~~   56 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATP--------------------------YLFWYVQYPRQGLQLLLKYYSGDPVV   56 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCC--------------------------EEEEEEECTTSCCEEEEEECSSCSEE
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCC--------------------------CEEEEEECCCCceeeeeeeccceecc
Confidence            5677888999999999999998754333                          37899842  11  11111  11111


Q ss_pred             ecCccEEEE-EcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVT-HNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....++... ......++|.|.+++.+|+|.|+|.+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          57 QGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             ECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             ccCcceeEEEeCcCCEEEEecccccccccceeccccc
Confidence            112233333 223456799999999999999999874

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.92  E-value=6.7e-09  Score=64.69  Aligned_cols=86  Identities=13%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee----
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH----   80 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~----   80 (238)
                      ..+.+.|..+.+.+|++++|+|...+  +                         ...+.|||....  +  +....    
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~--~-------------------------~~~~~WYrQ~~g~~p~~l~~~~~~~~   54 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTN--N-------------------------HNNMYWYRQDTGHGLRLIHYSYGVGN   54 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESS--C-------------------------CSEEEEEEECTTSCEEEEEEESSTTC
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECC--C-------------------------cCcEEEEEEcccCCceEEEEEeecCC
Confidence            34667888999999999999998753  1                         224899995321  1  11110    


Q ss_pred             eeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ........++.........+.|.|.+++.+|+|.|.|....
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          55 TEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             CEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            11111234555555555678999999999999999998743

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.92  E-value=5.6e-09  Score=65.43  Aligned_cols=83  Identities=13%  Similarity=0.276  Sum_probs=55.9

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeee----eeeE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAI----HEHV   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~----~~~~   83 (238)
                      ++.|..+.+.+|++++|+|....  +                         ...+.||++.  ..+  +...    ....
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~-------------------------~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~   55 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS--G-------------------------HRSVSWYQQTPGQGLQFLFEYFNETQRNK   55 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST--T-------------------------CCEEEEEEEETTTEEEEEEEEETTEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEECC--C-------------------------CCEEEEEEeecccceEeeeeecccccccc
Confidence            46678889999999999998642  1                         1248999942  221  1111    0111


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .....++.........++|.|.+++.+|+|.|.|.+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          56 GNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             CSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             cccccceeeccCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            12244666655556678999999999999999998753

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.92  E-value=4.5e-09  Score=66.11  Aligned_cols=84  Identities=17%  Similarity=0.358  Sum_probs=54.9

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc----eeeeeeee------
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT----KAVLAIHE------   81 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~~------   81 (238)
                      ++.|..+.+.+|+++.|.|.+.+...                         ...+.||+...    +.......      
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~-------------------------~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~   56 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISK-------------------------LTSIYWLRERQDPKDKYFEFLASWSSSKG   56 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCC-------------------------SSEEEEEEEEECSSCEEEEEEEEEETTTE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCC-------------------------CCceEEEEeecCCCCeEEEEeeEEecccC
Confidence            46788899999999999999865222                         23489998531    11111100      


Q ss_pred             eEe---ecCccEEEEE-cCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          82 HVI---TNNARLSVTH-NDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        82 ~~~---~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...   ....|+.... .....++|.|.+++.+|+|.|.|.+.
T Consensus        57 ~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          57 VLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             cEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCCcEEEEeEc
Confidence            000   1133554443 34467799999999999999999874

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.91  E-value=1.1e-09  Score=67.96  Aligned_cols=84  Identities=14%  Similarity=0.278  Sum_probs=55.5

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce-ee---eee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK-AV---LAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~---~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|.......                          ..+.||+.... ..   ... .....
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~--------------------------~~~~WYrq~~g~~~~~l~~~~~~~~~   56 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDIN--------------------------NFLNWYQQKPDGTIKLLIYYTSRLHA   56 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCT--------------------------TCEEEEEECTTSCEEEEEETTTEECT
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcC--------------------------CCeEEEEcCCCCcceEEEEeecccCC
Confidence            3457788899999999999999754322                          23899986321 11   110 11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....+|..... ...++|.|.+++.+|+|.|.|...
T Consensus        57 ~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          57 GVPSRFSGSGS-GTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             TCCTTCCCEEE-TTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CcCCCEEEEcc-CCEEEEEEeEeeecCCCcEEeeeC
Confidence            22346655443 346799999999999999999763

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=8e-10  Score=68.58  Aligned_cols=76  Identities=18%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee-eeeeee------Ee---ecCc
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV-LAIHEH------VI---TNNA   88 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-~~~~~~------~~---~~~~   88 (238)
                      .+.+|+++.|.|..  ..+.                        ...+.|+|...... .....+      ..   ...+
T Consensus        10 ~v~~G~~V~L~c~~--~p~~------------------------~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~g   63 (107)
T d1l6za1          10 QVAEDNNVLLLVHN--LPLA------------------------LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG   63 (107)
T ss_dssp             SCCTTCCEEEEEES--CCTT------------------------CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCS
T ss_pred             cccCCCCEEEEecC--CCCC------------------------ceEEEEEeCcccCCceeeEEEEcCCCccccCCccee
Confidence            46799999999973  2221                        34589999543211 001110      01   1134


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      |..+..+    .+|.|.+++.+|+|.|+|.+.+...
T Consensus        64 R~~l~~n----gSL~I~~v~~~D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          64 REIIYSN----GSLLFQMITMKDMGVYTLDMTDENY   95 (107)
T ss_dssp             SEEECTT----SCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEccc----ccEEEcCCCchhCEEEEEEEEECCC
Confidence            6666443    3899999999999999999966543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.89  E-value=6.4e-09  Score=64.76  Aligned_cols=85  Identities=15%  Similarity=0.229  Sum_probs=56.4

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-~~~~~   85 (238)
                      +++.+..+.+.+|++++|.|.......                          ..+.||++...    .+.... .....
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~--------------------------~~~~WYrQ~pg~~p~~l~~~~~~~~~~   56 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGY--------------------------PALFWYVQYPGEGPQFLFRASRDKEKG   56 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSC--------------------------CEEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCC--------------------------cceEEEEcCCCCceEEeeeeeeecccC
Confidence            467788899999999999999865322                          24899995321    111110 11111


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...+|...... ...+.|.|.++..+|+|.|.|.+..
T Consensus        57 ~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          57 SSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             EETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CCCceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence            23456555433 3567999999999999999998743

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.89  E-value=5.3e-09  Score=64.42  Aligned_cols=81  Identities=17%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~-~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|..+..                           ...+.||++....    ..... .....
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~---------------------------~~~~~WYrQ~~g~~~~~~~~~~~~~~~~   55 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS---------------------------VNYMYWYQQKSGTSPKRWIYDTSKLASG   55 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC---------------------------CSCCEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC---------------------------CCccEEEEeeccCceEEEEecccccCCC
Confidence            4577889999999999999986421                           1237899864211    11110 11111


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ...++..... ...++|.|.+++.+|+|.|.|..
T Consensus        56 ~~~~f~~~~~-~~~~~L~I~~~~~~Dsa~YyCa~   88 (104)
T d1yqvl1          56 VPVRFSGSGS-GTSYSLTISSMETEDAATYYCQQ   88 (104)
T ss_dssp             CCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCceEEEecC-CCEEEEEecccCcccCCeEEEEe
Confidence            2345655443 46779999999999999999975

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.88  E-value=1.7e-08  Score=63.00  Aligned_cols=84  Identities=15%  Similarity=0.241  Sum_probs=54.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-----eeeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-----HEHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~   86 (238)
                      ++++ .+.+.+|++++|.|.++...-                        ....+.||+.........     .......
T Consensus         5 tQ~p-s~~v~~G~svtL~C~~s~~~~------------------------~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~   59 (114)
T d2rhea_           5 TQPP-SASGTPGQRVTISCTGSATDI------------------------GSNSVIWYQQVPGKAPKLLIYYNDLLPSGV   59 (114)
T ss_dssp             BCCS-EEEECTTCCEEEEEECCTTTT------------------------TTSCEEEEECCTTSCCEEEEBTTTBCCTTC
T ss_pred             ccCC-cEEeCCCCCEEEEEEECCccc------------------------cCCcccceeeecccceEEEEEEeeeeccCC
Confidence            3444 688999999999999864321                        123489998643211110     0111122


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..++..... ...+.|.|.+++.+|++.|+|....
T Consensus        60 ~~~~~~~~~-~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          60 SDRFSASKS-GTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             CTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCcceecCC-CCeeeeEecccCcccCceEEEeecC
Confidence            346666543 4577999999999999999998743

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=4.8e-09  Score=65.09  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=55.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee-eeee--eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA-VLAI--HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~-~~~~--~~~~~   84 (238)
                      .+++++ .+.+.+|++++|.|.++.....                       ....+.||+..  ..+ ....  .....
T Consensus         3 ~~tQ~~-slsvs~G~tvtl~C~~s~~~~~-----------------------~~~~v~WyrQ~pg~~p~~l~y~~~~~~~   58 (110)
T d1oaql_           3 VVTQES-ALTTSPGETVTLTCRSSTGAVT-----------------------TSNYANWVQEKPDHLFTGLIGGTNNRAP   58 (110)
T ss_dssp             CEEECS-EEEECTTCEEEEEEEETTBCCC-----------------------GGGCCEEEEEETTTEEEEEEETTTEECT
T ss_pred             CEeeCC-CEEeCCCCCEEEEEEEcCCCCc-----------------------ceeeeEEEEeecccceeeeeeeeceecc
Confidence            345554 6889999999999998531100                       01238899853  111 1111  11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ....||...... ..+.|.|.+++.+|+|.|+|...
T Consensus        59 ~~~~rf~~s~~~-~~~~L~I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          59 GVPARFSGSLIG-NKAALTITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             TSCTTEEEEEET-TEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ccceeeeecccc-cceeeecCCCCccccEeEEEEcc
Confidence            234688776654 56799999999999999999864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.9e-09  Score=64.03  Aligned_cols=86  Identities=15%  Similarity=0.213  Sum_probs=53.9

Q ss_pred             ecCCCcEEEEEEEcc-ccCC--eEEEEeCCCeeeEeecCCCCC-cceEEEeeceEEEEEeecCCCe-EEEEEeeeCCCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP--KITWRREDNKEIIVRSNPPSS-QKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVPPT  224 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~--~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g~~  224 (238)
                      +.+|+.+.|.|.+.+ +|.+  .+.|++ ++..+......... ........+.|.+. +..+|.| .|+|.|+|..+..
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECSCCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEec-cCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCcCCc
Confidence            678999999999966 7754  689999 56555433321111 11111222245444 5556666 8999999987532


Q ss_pred             ------ccceEEEEEEeec
Q psy7941         225 ------VSKRLMLHVHCTY  237 (238)
Q Consensus       225 ------~~~~~~l~V~~~p  237 (238)
                            ...+..|.|+++|
T Consensus        91 ~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          91 DSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TTSCSEEEEEEECCEECCC
T ss_pred             cccccccceeEEeEEEeCC
Confidence                  2345668998887

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.8e-09  Score=64.78  Aligned_cols=83  Identities=14%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeeeee----Eeec
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIHEH----VITN   86 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~----~~~~   86 (238)
                      .+.+.+.+|++++|+|.++...                        .....+.|+|....    .+......    ....
T Consensus         6 e~~~~v~eG~svtl~C~~~~~~------------------------~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~   61 (113)
T d1smoa_           6 EEKYELKEGQTLDVKCDYTLEK------------------------FASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQ   61 (113)
T ss_dssp             EEEEECCTTCCEEEEEECCHHH------------------------HTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEE
T ss_pred             cCcEEEccCCCEEEEEEeCCCC------------------------CCCCEEEEEECCCCCCCEEEEecCCCCceEcceE
Confidence            3456788999999999985311                        01234889985321    11111000    0112


Q ss_pred             CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .+|+.+... ..+.++|+|.+++.+|+|.|+|.+..
T Consensus        62 ~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             CCeEEEEEECCCCEEEEEEccCCcccCceEEEEEEC
Confidence            347777653 44678999999999999999998843

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.1e-09  Score=66.59  Aligned_cols=84  Identities=17%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             ecCCCcEEEEEEEccccCCeEEEEeCCCe----eeEeec--------CCCCCcceEEEeeceEEEEEeecCCCeEEEEEe
Q psy7941         150 VPEGGSAKLVCKAKGYPTPKITWRREDNK----EIIVRS--------NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIA  217 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  217 (238)
                      +.+|+++.|.|.........+.|+++...    .+..-.        ......+.....+++|.|.+++.+|+|.|+|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            56899999999743333558999984321    111000        011123444556779999999999999999999


Q ss_pred             eeCCCCCccceEEEEE
Q psy7941         218 ANGVPPTVSKRLMLHV  233 (238)
Q Consensus       218 ~n~~g~~~~~~~~l~V  233 (238)
                      .+..+.....++.|.|
T Consensus        91 ~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          91 TDENYRRTQATVRFHV  106 (107)
T ss_dssp             EETTEEECCCCEEECC
T ss_pred             EECCCCEEEEEEEEEE
Confidence            9887545566777766

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.85  E-value=1.3e-08  Score=63.54  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-----eeeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-----AIHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~   85 (238)
                      +++ |..+.+.+|++++|.|........                       ....+.||++......     ........
T Consensus         4 ltQ-P~s~~~~~G~svtl~C~~~~~~~~-----------------------~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~   59 (112)
T d1lgva1           4 LTQ-PASVSGSPGQSITVSCTGVSSIVG-----------------------SYNLVSWYQQHPGKAPKLLTYEVNKRPSG   59 (112)
T ss_dssp             BBC-CSEEEECTTCCEEEEEECCCCSSS-----------------------CCCCEEEEEECTTSCCEEEEBTTTBCCTT
T ss_pred             ccC-CCcEEECCCCCEEEEEEeCCCCCC-----------------------CCCcceeeeeeecccceeeeeeeccccCC
Confidence            345 568999999999999997532110                       1234899985321111     11111122


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...++..... ...++|.|.+++.+|+|.|+|....
T Consensus        60 ~~~~~~~~~~-~~~~~L~I~~l~~~Dsa~YyCa~~~   94 (112)
T d1lgva1          60 VSDRFSGSKS-GNSASLTISGLQAEDEADYYCSSYD   94 (112)
T ss_dssp             SCTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CcccEEEECC-CCEeeEEeCcCccccCEEEEEeeec
Confidence            3456666554 3567999999999999999998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.85  E-value=1e-08  Score=63.79  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=56.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--eeee---eeeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KAVL---AIHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~---~~~~~~~~   85 (238)
                      +++.|..+.+.+|++++|+|.++.....                      .....+.||++..  ....   ........
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~----------------------~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g   61 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRT----------------------SGYSYMDWNQQKPGQPPRRLIYLVSNLESG   61 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCC----------------------SSSCCEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCcc----------------------CCccceEEEEECCCCccEEEEEccCccCCC
Confidence            4577889999999999999987532110                      0122389998632  1111   11111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...||..... ...+.|+|.+++.+|+|.|+|.+.
T Consensus        62 ~~~rfs~~~~-~~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          62 VPARFSGSGS-GTDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             CCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCcEEEecC-CCchhcccccccccCCceEEEEEC
Confidence            2457876654 356799999999999999999763

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=3.9e-09  Score=66.47  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=55.6

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce---e-eeee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK---A-VLAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~-~~~~-~~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|...+....                          .+.||+....   . +... ......
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~--------------------------~i~WYrQ~pg~~~~~l~~~~~~~~~~   57 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINN--------------------------YLAWYQQKLGEAPKLLIYNTNSLQTG   57 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBT--------------------------CEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcc--------------------------eeEEeeeecccccEEEEEeeccccCc
Confidence            4567788899999999999987543222                          3899986321   1 1111 111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...+|..... ...+.|.|.+++.+|+|.|+|....
T Consensus        58 ~~~~fs~~~~-~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          58 IPSRFSGSGS-GTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CCTTEEEEEE-BTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             eeeeecccCC-CCEEEEEcccCccCCCeEEEeeccC
Confidence            2456665543 3457999999999999999997643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.84  E-value=1.9e-08  Score=62.80  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-eeeEeecCc
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-HEHVITNNA   88 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-~~~~~~~~~   88 (238)
                      .|..+.+.+|++++|.|.+......                         ..+.||+...  .+  +... .........
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~-------------------------~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~   58 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGT-------------------------DYIHWYRQLPSQGPEYVIHGLTSNVNNRMA   58 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTT-------------------------CCEEEEEECTTSCCEEEEEESSSSEECSSE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCcc-------------------------ccEEEEEECCCCCcceeeeecceecccccc
Confidence            4567889999999999998643221                         2389999531  11  1111 111111223


Q ss_pred             cEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ++.... +.....|.|.+++.+|+|.|.|.+.
T Consensus        59 ~~~~~~-~~~~~~L~i~~~~~~Dsa~YyCa~~   89 (112)
T d1kgcd1          59 SLAIAE-DRKSSTLILHRATLRDAAVYYCILP   89 (112)
T ss_dssp             EEEECT-TSSEEEEEESSCCGGGCEEEEEECC
T ss_pred             ceeecc-cCCeeEEEEeecccccceeEeeeEe
Confidence            444433 3456789999999999999999764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.84  E-value=1.4e-08  Score=63.59  Aligned_cols=84  Identities=14%  Similarity=0.340  Sum_probs=54.0

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-eeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-EHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-~~~~~   85 (238)
                      +.+.|..+.+.+|++++|.|..+..                           ...+.||+....  +  +.... .....
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~---------------------------~~~~~WYrQ~pg~~p~~l~~~~~~~~~~   55 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV---------------------------FSSLQWYRQEPGEGPVLLVTVVTGGEVK   55 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC---------------------------CSCEEEEEECTTSCCEEEEEECSTTCEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC---------------------------CceEEEEecCCCCceeeeeeeeecccce
Confidence            4567888999999999999986431                           124899985321  1  11111 10111


Q ss_pred             cCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          86 NNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...++..... ....++|.|.+++.+|+|.|+|.+..
T Consensus        56 ~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          56 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             EETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             eecccccccccccceeeeeecCCCccceeeEcccccC
Confidence            1234443332 34678999999999999999998753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2e-08  Score=63.30  Aligned_cols=91  Identities=15%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--ee----eEeec
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HE----HVITN   86 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~----~~~~~   86 (238)
                      ..|+.+.+.+|+++.|+|.+.......                    ......+.|++.........  ..    .....
T Consensus         5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~--------------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~   64 (118)
T d1qfoa_           5 SSPKNVQGLSGSCLLIPCIFSYPADVP--------------------VSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF   64 (118)
T ss_dssp             ECCSEEEEETTSCEEECCEEECCTTSC--------------------C--CCEEEEEESTTTTCEEEEESSCGGGSCTTT
T ss_pred             ECCCEEEEecCCcEEEEEEEeeccCCC--------------------CcceEEEEEEeeceeccceeeeecccccccccc
Confidence            346789999999999999986432211                    01123467887543211111  00    01112


Q ss_pred             CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .+|+.+... ..+.++|.|.+++.+|+|.|.|++...+
T Consensus        65 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             CCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeCC
Confidence            456666543 3367799999999999999999996543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.83  E-value=9.4e-09  Score=64.08  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-----eeeeEeec
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-----IHEHVITN   86 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~   86 (238)
                      +++ ..+.+.+|+++.|+|.++...-                        ....+.||+........     ........
T Consensus         5 tQp-~s~~v~~G~svtl~C~~s~~~~------------------------~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~   59 (111)
T d1rzfl1           5 TQP-PSVSAAPGQKVTISCSGSSSNI------------------------GNNDVSWYQQFPGTVPKLVIYENNERPSGI   59 (111)
T ss_dssp             BCC-SEEEECTTSCEEEEEECCCCCC------------------------CTSCEEEEEECTTSCCEEEEBTTTBCCTTC
T ss_pred             eeC-cceEeCCCCCEEEEEEECCcCC------------------------cCCcccceeeecccceEEEeeecCCCcccc
Confidence            444 4789999999999999754210                        12248999863221111     01111122


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ..|+..... ...++|.|.+++.+|+|.|+|....
T Consensus        60 ~~r~~~~~~-~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          60 PDRFSGSKS-GTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             CTTEEEEEE-TTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             ccceeeeCC-CCEeeeEEeeeccccCcceEEeecC
Confidence            456766554 3467999999999999999998743

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.81  E-value=1.8e-08  Score=62.83  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=57.2

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~   84 (238)
                      .+++.|..+.+.+|++++|.|..+.....                     ......+.||+....    .+... .....
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~---------------------~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~   62 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVH---------------------NNGNTYLEWYLQKPGQSPQLLIYKVSNRFS   62 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCC---------------------TTSCCCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             eEeCcCCEEEECCCCCEEEEEEecccccc---------------------CCCceEeEEEecCCCCccEEEEEecCCCcc
Confidence            35677889999999999999998532110                     011235899986321    11111 01112


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ....+|..... ...++|.|.+++.+|+|.|+|..
T Consensus        63 ~~~~~fs~~~~-~~~~~L~I~~~~~~DsavYyCa~   96 (113)
T d1n4xl_          63 GVPDRFSGSGS-GTDFTLKISRVEAEDLGIYYCFQ   96 (113)
T ss_dssp             TCCTTEEEEEC-SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             ccCCCeeeecc-CCcccCccCCCCcccCEEEEEEE
Confidence            23457776553 45679999999999999999965

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.81  E-value=5.9e-09  Score=64.56  Aligned_cols=79  Identities=30%  Similarity=0.414  Sum_probs=51.7

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeee-eeeEeecCcc
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAI-HEHVITNNAR   89 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~-~~~~~~~~~~   89 (238)
                      |..+.+.+|++++|+|...+...                          ..+.||++....    +... .........+
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~--------------------------~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~   60 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGS--------------------------RSVHWYQQKPGQAPVLVVYDDSDRPSGIPER   60 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGG--------------------------SCCEEEEECTTSCCEEEEBTTTBCCTTSCTT
T ss_pred             CCeEEECCCCCEEEEEEcCCCCC--------------------------cceeeeeccccceeEEEEEccccCCCceeee
Confidence            34788999999999999754322                          238999863211    1111 0111112345


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +..... ...++|.|.+++.+|+|.|.|...
T Consensus        61 ~~~~~~-~~~~~L~I~~l~~~DsavYyCA~~   90 (109)
T d1w72l1          61 FSGSNS-GNMATLTISRVEAGDEADYYCQVW   90 (109)
T ss_dssp             EEEEEE-TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeeecC-CCccceEEeeeccCCCEEEEEEec
Confidence            555443 456799999999999999999874

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=2.9e-08  Score=62.48  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee--eeEe-ecC
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH--EHVI-TNN   87 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~--~~~~-~~~   87 (238)
                      |..+.+.+|+++.|+|.+.+....                       ....+.||++....    .....  .... ..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~-----------------------~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~   62 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNT-----------------------DEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLD   62 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTT-----------------------CEEEEEEEEECSSCEEEEEEEEECSSSBEECTT
T ss_pred             CCEEEEcCCCcEEEEEECccCCcc-----------------------cceeEEEEEeCCCCCcEEEEEEeCCcccccCCC
Confidence            567888999999999998643211                       12347899953221    11110  1111 112


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .++.........++|.|.+++.+|+|.|.|.+.
T Consensus        63 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          63 YPFCSGTFNESRVNLTIQGLRAVDTGLYLCKVE   95 (117)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEEEeCCCCEEEEEhhcCccccCEeEEEEEe
Confidence            223233334467799999999999999999874

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.80  E-value=1.1e-08  Score=63.92  Aligned_cols=85  Identities=19%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             cceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee---e
Q psy7941           9 PDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH---E   81 (238)
Q Consensus         9 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~---~   81 (238)
                      +.+.+.|..+.+.+|++++|.|....  +                         ...+.||+.....    +....   .
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~--~-------------------------~~~~~WYrQ~~g~~~~~l~~~~~~~~   54 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS--G-------------------------HSNVVWYQQTLGKELKFLIQHYEKVE   54 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT--T-------------------------CCEEEEEEBCSSCCCEEEEEEETTTE
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC--C-------------------------CCEEEEEEECCcCCCcceeeeeeccc
Confidence            45677888999999999999998532  1                         1248999864221    11111   0


Q ss_pred             eE-eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          82 HV-ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .. -....+|.........++|.|.+++.+|+|.|.|.+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          55 RDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASS   94 (113)
T ss_dssp             EEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEEE
T ss_pred             ccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEee
Confidence            00 0123466665555566799999999999999999864

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.80  E-value=1.5e-08  Score=63.36  Aligned_cols=89  Identities=16%  Similarity=0.282  Sum_probs=56.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~-~~~~~~   85 (238)
                      +++.|..+.+.+|++++|+|.++.....                    .......+.||+....    ++... ......
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~--------------------~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~   63 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLN--------------------SRTRKNYLAWYQQKPGQSPKLLIYWASTRESG   63 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEE--------------------TTTTEECEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCccc--------------------CCCCCcceEEEecCCCCCCEEEEecccccCCC
Confidence            4577889999999999999987532100                    0001224899985321    11111 111122


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++.... ....++|.|.+++.+|+|.|.|...
T Consensus        64 ~~~~~s~~~-s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          64 VPDRFTGSG-SGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             SCTTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCccEEEeC-CCCeEeEEecccccCCCeEEEeccc
Confidence            244666544 3566799999999999999999763

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.80  E-value=2.3e-08  Score=62.61  Aligned_cols=84  Identities=14%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------e
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------H   82 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~   82 (238)
                      +.+.|..+.+.+|++++|.|..+. .                          ...+.||++..........        .
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s~-~--------------------------~~~~~WYrQ~~g~~~~~l~~~~~~~~~~   54 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQNL-N--------------------------HDAMYWYRQDPGQGLRLIYYSQIVNDFQ   54 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-C--------------------------CSEEEEEEECTTCCEEEEEEESSTTCCE
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEec-C--------------------------CCcEEEEeeccccCCcceeeeeeeeccc
Confidence            356788899999999999999742 1                          2248999864321111100        0


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ......++.........++|.|.+++.+|+|.|.|....
T Consensus        55 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          55 KGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             ECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             cccCCCceEEEcccCCeEEEEECcCCcCCceeEEEeecc
Confidence            111123444444445567899999999999999997753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.79  E-value=6.9e-08  Score=61.08  Aligned_cols=86  Identities=23%  Similarity=0.344  Sum_probs=57.2

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeE
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHV   83 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~   83 (238)
                      +.+++..+.+.+|+++.|+|.+++..-                        ....+.||++...  +  +....   ...
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~------------------------s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~   59 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITI------------------------SATSVYWYRERPGEVIQFLVSISYDGTVR   59 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCT------------------------TTSCEEEEEECTTSCCEEEEEECSSSCEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCc------------------------ccCeEEEEEECCCCCceEeeecccccccc
Confidence            456677888999999999999874310                        0224899986321  1  11111   111


Q ss_pred             e---ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          84 I---TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        84 ~---~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .   ...+||.+.... ...+.|.|.+++.+|+|.|+|...
T Consensus        60 ~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          60 KESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccccccceeEEeeeccccceeecccccccccCcEEEEeee
Confidence            1   124578887644 467789999999999999999863

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.79  E-value=3.4e-08  Score=61.59  Aligned_cols=83  Identities=11%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee----ee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH----EH   82 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~----~~   82 (238)
                      +.+.|..+.+.+|++++|+|..+. .                          ...+.||++...  +  +....    ..
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~--------------------------~~~~~WYrQ~~g~~p~~l~~~~~~~~~~   54 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-N--------------------------HEYMSWYRQDPGMGLRLIHYSVGAGITD   54 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-C--------------------------CSEEEEEEEETTTEEEEEEEEEETTEEE
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-C--------------------------ccceEecccccccCccceeeEeccCcee
Confidence            356678888999999999998742 1                          224899985321  1  11110    00


Q ss_pred             EeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          83 VITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .-....++.........+.|.|.++..+|+|.|.|...
T Consensus        55 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          55 QGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             ECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             cCccccceeEecCCCCEEEEEECCCCHHHCEEEEEeec
Confidence            11112344444444556799999999999999999774

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.79  E-value=1.4e-08  Score=62.77  Aligned_cols=79  Identities=19%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee-eeEeecCcc
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH-EHVITNNAR   89 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~-~~~~~~~~~   89 (238)
                      |..+.+.+|++++|+|...+....                          .+.||+....  +  +.... ........|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~--------------------------~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~r   59 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKN--------------------------FAYWFQQKSDKNILLLIYMDNKRPSGIPER   59 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGS--------------------------CCEEEEECTTCCEEEEEBTTTBCCTTSCTT
T ss_pred             CCeeEECCCCCEEEEEECCCCCCc--------------------------cEEEEecccccceeeeccccccccccccce
Confidence            567889999999999987543222                          3889985321  1  11100 111122457


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      |..... ...++|.|.+++.+|+|.|.|.+.
T Consensus        60 f~~~~~-~~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          60 FSGSTS-GTTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             EEEEEE-TTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             eeecCC-CCEeeeeEcCccccCCceEEEEee
Confidence            776654 456799999999999999999874

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.78  E-value=3.3e-08  Score=61.51  Aligned_cols=87  Identities=17%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee---e-ee-eeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV---L-AI-HEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~---~-~~-~~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|..+.....                     ......+.||++.....   . .. ......
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~---------------------~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g   62 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLN---------------------SNGKTFLNWLLQRPGQSPKRLIYLGTKLDSG   62 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCEEEEEETTTEECTT
T ss_pred             EeCcCCEEEECCCCCEEEEEEECccccc---------------------CCCCcccEEEEcCCCCceEEEEeccCcCCCC
Confidence            4567888999999999999987532100                     00122488998632111   1 11 111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ...+|..... ..++.|.|.+++.+|+|.|+|..
T Consensus        63 ~~~~fs~~~~-~~~~~L~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          63 VPDRFTGSGS-GTDFTLKISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             CCTTEEEEEE-TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCceEEeeCC-CCEEEEEECccccCcCEeEEEEc
Confidence            2456766543 35679999999999999999965

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.78  E-value=5.3e-08  Score=60.81  Aligned_cols=85  Identities=13%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee----e
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH----E   81 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~----~   81 (238)
                      .+.+.|..+.+.+|+++.|.|....  +                         ...+.||+...  .+  +....    .
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~~--~-------------------------~~~~~WYrQ~pg~~~~~l~~~~~~~~~   54 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQDM--D-------------------------HENMFWYRQDPGLGLRLIYFSYDVKMK   54 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEESS--C-------------------------CSEEEEEEEETTTEEEEEEEESSTTCC
T ss_pred             EEEccCCEEEECCCCCEEEEEEEcC--C-------------------------ccEEEeEEecCCCCcceeeeeeeeeee
Confidence            3567788899999999999998632  1                         12488998532  11  11110    0


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .......++.........+.|.|.+++.+|+|.|.|.+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          55 EKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             EECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             ecccccccceEEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            1111124555555556678999999999999999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.2e-09  Score=65.14  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe-e--cCccEEEE
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI-T--NNARLSVT   93 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~--~~~~~~~~   93 (238)
                      .+.+..|++++|+|.+.......                      ....+.|.+++............ .  ...|....
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~----------------------~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~   60 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEEL----------------------AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD   60 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHH----------------------HHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccce----------------------eEEEEEEEecceEEEEEEeccceeecceeeeeeec
Confidence            46788999999999875322111                      13357888876544332221111 1  12344443


Q ss_pred             EcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          94 HNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        94 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                        ..++++|.|.+++.+|+|.|.|.+.+.
T Consensus        61 --~~g~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1          61 --ITNNLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             --STTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             --cCCcEEEEECcCChHHCeEEEEEEEeC
Confidence              335679999999999999999999653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.77  E-value=2.2e-08  Score=62.32  Aligned_cols=87  Identities=17%  Similarity=0.249  Sum_probs=55.7

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eee-eeeeEee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLA-IHEHVIT   85 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~-~~~~~~~   85 (238)
                      +++.|..+.+.+|++++|.|.+......                      .....+.||+...  .+  +.. .......
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~----------------------~~~~~~~WYrq~~g~~p~~liy~~~~~~~~   61 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDI----------------------FGVGFLHWYQQKPGQPPKLLIYRASNLESG   61 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBS----------------------SSCBCEEEEEECTTSCCEEEEETTTEECTT
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCcc----------------------CCceeEEEEEccCCCCCEEEEEeeccccCC
Confidence            4577888999999999999987532110                      0122489998532  11  111 1111112


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ...++.... ....++|.|.+++.+|+|.|.|.+.
T Consensus        62 ~~~~~~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          62 IPVRFSGTG-SRTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             SCTTEEEEC-SSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCcEEEec-CCCEEEEEEcccccccCccEEEeec
Confidence            244666544 3467899999999999999999764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.77  E-value=6.5e-08  Score=60.92  Aligned_cols=87  Identities=18%  Similarity=0.308  Sum_probs=57.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce----eeeeee-----
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK----AVLAIH-----   80 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~-----   80 (238)
                      .+.+++..+.+.+|+++.|.|.+....-                        ....+.||+....    .+....     
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~------------------------~~~~i~WYrQ~pg~~~~~l~~~~~~~~~   58 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESF------------------------RSVTIHWYRQKPNQGLEFLLYVLATPTH   58 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGG------------------------GGCCEEEEEECTTTCCEEEEEECSSCCC
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccc------------------------cCCcccEEEeCCcccccccccccccccc
Confidence            4567778889999999999998753210                        0124899996311    111110     


Q ss_pred             eeEeecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          81 EHVITNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .......+|+..... ....+.|.|.+++.+|+|.|.|...
T Consensus        59 ~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          59 IFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             EEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             eeeeccccccccccccccccccccccccccccceeEEEEEc
Confidence            111122357777654 3467899999999999999999774

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.75  E-value=2.8e-08  Score=61.87  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=55.9

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee--e--eee-eeeEe
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA--V--LAI-HEHVI   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~--~~~-~~~~~   84 (238)
                      ..+++|..+.+.+|++++|+|.++...-.                     ......+.||+.....  .  ... .....
T Consensus         3 vlTQ~p~slsv~~G~svtL~C~~s~~~~~---------------------~~~~~~i~WYrq~~g~~~~~liy~~~~~~~   61 (112)
T d1mjul1           3 VMTQAAPSVPVTPGESVSISCRSSKSLLH---------------------SNGNTYLYWFLQRPGQSPQLLIYRMSNLAS   61 (112)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCBC---------------------TTSCBCEEEEEECTTSCCEEEEETTTEECT
T ss_pred             ceEecCCEEEECCCCCEEEEEEECCCCcc---------------------CCCCceeEEEECCCCCcEEEEEEeCCcccC
Confidence            34577889999999999999997542100                     0012348999863211  1  111 11111


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ....|+..... ...+.|.|.+++.+|++.|+|..
T Consensus        62 ~~~~r~~~~~s-~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          62 GVPDRFSGSGS-GTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             TSCTTEEEEEC-SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCcEEeecC-CCEEEEEECCccccCCceEEEEe
Confidence            22446666543 46779999999999999999964

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.74  E-value=7.9e-08  Score=60.55  Aligned_cols=88  Identities=15%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             ceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee-eeeeeeeE--e
Q psy7941          10 DFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA-VLAIHEHV--I   84 (238)
Q Consensus        10 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~-~~~~~~~~--~   84 (238)
                      .+...+..+.+.+|++++|+|.+++..-                        ....+.||+..  +.+ ........  .
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~------------------------~~~~~~WyrQ~pg~~~~~l~~~~~~~~~   58 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAI------------------------GNYYINWYRKTQGNTMTFIYREKDIYGP   58 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCG------------------------GGSEEEEEEEESSSCSEEEEETTTEECT
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCc------------------------cCCcCeEEEccccccceeeeccccceee
Confidence            3456677889999999999999864210                        02348999852  211 11111111  1


Q ss_pred             ecCccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          85 TNNARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        85 ~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ...+|+..... ..+.+.|.|.+++.+|+|.|.|....
T Consensus        59 ~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          59 GFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cccccceeeccccccceecccccccccCCceeecCccc
Confidence            12357776653 33568999999999999999998744

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=8.3e-08  Score=59.24  Aligned_cols=82  Identities=15%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-ee---eeeee----eeEeecC
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KA---VLAIH----EHVITNN   87 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~---~~~~~----~~~~~~~   87 (238)
                      +.+.+.+|++++|+|.++...                        .....+.|++... ..   .....    .......
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~------------------------~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~   58 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMK------------------------YANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHM   58 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHH------------------------HTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEE
T ss_pred             CCCcCCCCCCEEEEEEECCCC------------------------ccCCcEEEEEECCCCCEEEEEecCCCceeechhhC
Confidence            456789999999999986321                        0022478998532 11   11100    0011113


Q ss_pred             ccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          88 ARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        88 ~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      +|+++... ..+.++|+|.+++.+|+|.|+|....
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~   93 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYH   93 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEeC
Confidence            57887753 44788999999999999999998744

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-07  Score=58.88  Aligned_cols=81  Identities=19%  Similarity=0.425  Sum_probs=46.8

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEe-e----cCcc
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVI-T----NNAR   89 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~-~----~~~~   89 (238)
                      .+.+..|++++|+|.++.......                     ....+.|.+..........  .... .    ...|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r   61 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSL---------------------SELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGR   61 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCG---------------------GGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTS
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCc---------------------ceeEEEeeccccceEEEEeCCceecccCCcceEEE
Confidence            467889999999999864322210                     0112445554433322111  1110 1    1123


Q ss_pred             EEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          90 LSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        90 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      ....   .+.++|.|.+++.+|+|.|.|.+..
T Consensus        62 ~~~~---~~~~sL~I~~v~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          62 TSFD---SDSWTLRLHNLQIKDKGLYQCIIHH   90 (110)
T ss_dssp             EEEE---TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             Eecc---CCeEEEEECCCChhHCEEEEEEEEe
Confidence            2322   3345899999999999999999954

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.2e-08  Score=61.36  Aligned_cols=83  Identities=20%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee----eee--eeEe-ecC
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL----AIH--EHVI-TNN   87 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~----~~~--~~~~-~~~   87 (238)
                      |..+.+.+|++++|.|.+.......                       ...+.|||+......    ...  .... ...
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~-----------------------~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~   62 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKAT-----------------------EVRVTVLRQADSQVTEVCAATYMMGNELTFLD   62 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCS-----------------------EEEEEEEEESTTCCCEEEEEEEETTSCCCCCS
T ss_pred             CCEEEEeCCCcEEEEEEcccccccc-----------------------ceeEEEEEECCCCeeEEEEEEeCCCCEecccC
Confidence            5678889999999999985432110                       124889996432111    110  0000 011


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .++.........++|.|.+++.+|+|.|.|.+.
T Consensus        63 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   95 (118)
T d1i8lc_          63 DSICTGTSSGNQVNLTIQGLRAMDTGLYICKVE   95 (118)
T ss_dssp             SCSCCCCBCSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEeEcCCCCEEEEEeeccccCCCEEEEEeEe
Confidence            122222233457799999999999999999874

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.68  E-value=4.3e-08  Score=61.04  Aligned_cols=82  Identities=18%  Similarity=0.310  Sum_probs=53.3

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceee--eeee---eeEeecCcc
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAV--LAIH---EHVITNNAR   89 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~~---~~~~~~~~~   89 (238)
                      |..+.+.+|++++|.|.++...-                        ....+.|+++.....  ....   .......++
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~------------------------~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~   62 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNI------------------------DSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDR   62 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCG------------------------GGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTT
T ss_pred             CCeeEECCCCCEEEEEEECCCCc------------------------cCceEEEeeeccCceeEeeeccccccCcccCCc
Confidence            56899999999999999853210                        012489998642211  1000   011112356


Q ss_pred             EEEEEc-CCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          90 LSVTHN-DANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        90 ~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +..... ....+.|.|.+++.+|+|.|+|...
T Consensus        63 ~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~   94 (111)
T d1cd0a_          63 FAGSIDRSSNSASLTISGLKTEDEADYYCQSY   94 (111)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEeecCCCCccccccccCCcccCcEEEEeec
Confidence            666543 3468899999999999999999763

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.67  E-value=1.7e-07  Score=58.01  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=51.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee---------cC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT---------NN   87 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---------~~   87 (238)
                      ...+++|+++.|+|.+++..-.                      .....+.|+|+.....+..-..+..         -.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~----------------------~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~k   66 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSIT----------------------RTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIK   66 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTT----------------------STTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHH
T ss_pred             CceECCCCCEEEEEEEcccccc----------------------cCccccCcccCCCcccceeeeecccccchhhchhhc
Confidence            3457889999999998753210                      0112478988632111111111111         13


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEec
Confidence            5888876544 56789999999999999999753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.65  E-value=2.6e-08  Score=62.20  Aligned_cols=83  Identities=16%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee---e-eE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH---E-HV   83 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~---~-~~   83 (238)
                      .+.|..+.+.+|++++|.|....  +                         ...+.||+.....    +....   . ..
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~--~-------------------------~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~   54 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM--G-------------------------HDKMYWYQQDPGMELHLIHYSYGVNSTEK   54 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT--C-------------------------CSEEEEEEECTTSCCEEEEEESSTTCCEE
T ss_pred             EECCCEEEECCCCCEEEEEEEeC--C-------------------------cccEEEEEEcCCCCcEEeeeeeccCcccc
Confidence            45678889999999999999742  1                         1248999864221    11000   0 00


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .....++.........++|.|.+++.+|+|.|.|.+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          55 GDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASSE   92 (112)
T ss_dssp             SSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEEEC
T ss_pred             ccccccceeecCCCCceEeeeccccccccccEEEEEec
Confidence            11122344444445667899999999999999998743

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.5e-07  Score=57.25  Aligned_cols=83  Identities=10%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      .|.+..+.   .+.+|+.++|+|.+.+.....                       .+.+.|++++..+............
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~-----------------------~~~i~W~~g~~~~~~~~~~~~~~~~   57 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFD-----------------------RLEIDLLKGDHLMKSQEFLEDADRK   57 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGG-----------------------GEEEEEEETTEEEEEEECCSCCSSC
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCC-----------------------ceEEEEeccCceeeccccccccccC
Confidence            45554433   367999999999997532211                       2358999976654432222222223


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      +.+....      .|.+.-....+...|+|+|.+.
T Consensus        58 ~~~~~~s------~l~~~~~~~D~g~~ltC~a~~~   86 (109)
T d1vcaa1          58 SLETKSL------EVTFTPVIEDIGKVLVCRAKLH   86 (109)
T ss_dssp             CCEEEEE------EEEECCCGGGTTCEEEEEEEEC
T ss_pred             CcceeeE------EEEccCChHHCCcEEEEEEEcC
Confidence            3343332      6666544444445999999754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.65  E-value=1.4e-07  Score=58.64  Aligned_cols=81  Identities=16%  Similarity=0.341  Sum_probs=50.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeEee--cCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHVIT--NNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~~~--~~~   88 (238)
                      ..+++|+++.|+|.+++..                      .......+.|+|+...  +  +....   .....  -.+
T Consensus        10 ~~v~PG~sv~LsC~~SG~s----------------------~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~g   67 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFS----------------------LTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQS   67 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCC----------------------TTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCS
T ss_pred             eeECCCCCEEEEEEEcccC----------------------ccCCCCeEeeccccccccceeeecccCCcccccchhhcc
Confidence            3467899999999986421                      1111235889986321  1  11110   01111  146


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        68 Rft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          68 RLTITKDASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             SEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ccceecccccceeeeeEEeeeeccceEEeeEec
Confidence            888776433 56899999999999999999643

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.65  E-value=2.5e-07  Score=56.83  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------E--
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------V--   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~--   83 (238)
                      +.....+++|+++.|+|.+++.   .+                     ....+.|+|+........-..        .  
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~---~~---------------------~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~   60 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEY---TL---------------------TSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYN   60 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSC---CC---------------------SCCEEEEEEECTTSCEEEEEEEETTTTEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccc---cC---------------------CCCcCccceeCCCccceeeeecCCccCccccc
Confidence            3445568899999999999742   11                     122488988632111111111        1  


Q ss_pred             eecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          84 ITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ..-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        61 ~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr   97 (117)
T d1um5h1          61 EKFRGKATLTSDKSSNTAYLELSSLTSEDSAVYYCAR   97 (117)
T ss_dssp             GGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceeeeEEEEeccCceeEeecccccCCCcceEEEEee
Confidence            11246888876443 6678999999999999999965

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.64  E-value=2.7e-07  Score=56.38  Aligned_cols=83  Identities=13%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEe--------
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVI--------   84 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--------   84 (238)
                      ..+....+++|+++.|+|.++...-.                        ...+.|+|+........-..+.        
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~------------------------~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~y   60 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFT------------------------NYWINWVKQRPGQGLEWIGNIYPGSSYTHY   60 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             eeECCcEECCCCCEEEEEEEccCccc------------------------cCceEeeeeCCCcceeeeeecCcccccccc
Confidence            34555678899999999999842110                        1247888853221111111111        


Q ss_pred             --ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 --TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 --~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                        .-.+|+.+..... +...|.+.+++.+|++.|+|.-
T Consensus        61 a~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          61 NEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccceeeeEecccccceeEecccccCCCCceEEEEcc
Confidence              1235888876444 6779999999999999999964

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.63  E-value=7.3e-07  Score=54.69  Aligned_cols=81  Identities=19%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------e--eEeec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------E--HVITN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~--~~~~~   86 (238)
                      ...+++|+++.|+|.++...   +.                     ...+.|+++.....+..-        .  ....-
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s---~~---------------------~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~   64 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYT---LT---------------------ELPVHWVRQAPGKGLEWVGSFDPESGESIYAREF   64 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGG
T ss_pred             CceECCCCCEEEEEEEcCCC---CC---------------------CCCEEEEEECCCCceeeeeecCCccccceeccee
Confidence            34578899999999997421   00                     124789886321111110        0  11123


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|....
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeeecccccceEEEeecccCcCcceEEEEeEcC
Confidence            56888877544 677899999999999999997643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.63  E-value=2.6e-07  Score=57.26  Aligned_cols=81  Identities=14%  Similarity=0.268  Sum_probs=52.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--~   85 (238)
                      ....+++|+++.|+|.++...   +.                     ...+.|+++........-..+        +  .
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s---~~---------------------~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~   63 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYS---FT---------------------GHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQK   63 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSC---GG---------------------GSEEEEEEECTTSCEEEEEEEETTTTEEEECGG
T ss_pred             CCcEECCCCCEEEEEEEcccc---CC---------------------CCCcceeeecCCCceEEeeecCccccchhhhHH
Confidence            344578999999999987431   00                     224889986321111111111        1  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        64 ~kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          64 FKDKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hhhcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence            245888776443 67789999999999999999764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.61  E-value=2.3e-07  Score=57.03  Aligned_cols=78  Identities=15%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--ecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--TNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--~~~   87 (238)
                      ..+++|+++.|+|.++...   +.                     ...+.|+++........-..+        +  .-.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s---~~---------------------~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~   65 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYS---FI---------------------DYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFK   65 (115)
T ss_dssp             EEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGB
T ss_pred             cEECCCCCEEEEEEEcccc---CC---------------------CCCcceeEEcCCCccEEeeccCCCCCcccccceee
Confidence            3588899999999987421   00                     124788885221111111111        1  113


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      +||.+..... +...|.|.+++.+|++.|+|..
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            5888876443 5678999999999999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.60  E-value=4.5e-07  Score=55.31  Aligned_cols=79  Identities=19%  Similarity=0.474  Sum_probs=51.4

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--~~   86 (238)
                      .-.+++|+++.|+|.+++..   ++                     ...+.|+++........-.        ..+  .-
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~---~s---------------------~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~   64 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFT---LS---------------------GETMSWVRQTPEKRLEWVATTLSGGGFTFYSASV   64 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTCCEEEEEEECSTTCCEEECTTT
T ss_pred             CceECCCCCEEEEEEECccC---cc---------------------CCceeccccCCCCccEEeeecccccchhhhhhhh
Confidence            34578999999999997421   11                     2247888864211111111        111  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        65 kgRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          65 KGRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            46888877444 6778999999999999999964

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.2e-07  Score=55.12  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|..+ |..|++++|+|.....                           ...+.|+|++........     .
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~~~---------------------------~~~f~L~k~g~~~~~~~~-----~   49 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGNYG---------------------------AVEYQLHFEGSLFAVDRP-----K   49 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECCTT---------------------------CCEEEEEETTEEEEEECC-----S
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecCCC---------------------------ccEEEEEECCCCcceeEE-----c
Confidence            467777777654 6799999999996421                           334788887643221110     0


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .      ........+.|.+++.+|+|.|.|...+.
T Consensus        50 ~------~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          50 P------PERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             S------CTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             c------CCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            0      00122348999999999999999998653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.59  E-value=3.4e-07  Score=55.40  Aligned_cols=82  Identities=13%  Similarity=0.334  Sum_probs=53.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------I   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~   84 (238)
                      .....+++|+++.|+|.+++..-.                        ...+.|+++........-..+          +
T Consensus         7 SG~~~vkPG~Sl~LsC~~SG~t~~------------------------~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~y   62 (109)
T d2ck0h1           7 SGGGLVQPRGSLKLSCAASGFTFN------------------------TDAMNWVRQAPGKGLEWVARIRSKGFNFATYY   62 (109)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCEEEEEEECCGGGTTCEEE
T ss_pred             ECCCeECCCCCeEEEEEECCCccc------------------------ccccccceeCCCcceeccccccccccccccee
Confidence            334568899999999999743211                        124889886422111111111          1


Q ss_pred             --ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 --TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 --~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                        .-.+||.+..... +...|.|.+++.+|++.|+|.-.
T Consensus        63 a~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          63 ADSVRDRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccccCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence              1235888876443 67789999999999999999753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.59  E-value=1.4e-09  Score=65.95  Aligned_cols=79  Identities=20%  Similarity=0.426  Sum_probs=49.4

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--e--eeee-eeeeEeecCccEE
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--K--AVLA-IHEHVITNNARLS   91 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~--~~~~-~~~~~~~~~~~~~   91 (238)
                      .+.|.+|++++|+|.....                           ...+.||++..  .  .+.. .........+|++
T Consensus         2 slsV~eG~~vtL~C~~~~~---------------------------~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~   54 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS---------------------------INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLR   54 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC---------------------------EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCC
T ss_pred             CceECCCCCEEEEEEEeCC---------------------------cccEEEEEECCCCCccccccccceecccccccce
Confidence            4568899999999987431                           22489998531  1  1111 1111112234555


Q ss_pred             EEEc-CCCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          92 VTHN-DANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        92 ~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                      .... ....++|.|.+++.+|+|.|.|.+...
T Consensus        55 ~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   86 (96)
T d1ymmd1          55 VTLDTSKKSSSLLITASRAADTASYFCATDTT   86 (96)
T ss_dssp             BCCBGGGTBCCBCCSSCCSTTCSCCEEEEEET
T ss_pred             eeccCcceecccCcCCCCcccCEEEeEeEecC
Confidence            4432 234568999999999999999987543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.58  E-value=3.3e-07  Score=56.21  Aligned_cols=80  Identities=19%  Similarity=0.339  Sum_probs=51.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-------eeeEe--ecC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-------HEHVI--TNN   87 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-------~~~~~--~~~   87 (238)
                      ...+++|+++.|+|.+++..-                        ....+.|+++.....+..       ....+  .-.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~------------------------~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~k   64 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSF------------------------DDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLR   64 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCS------------------------TTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGT
T ss_pred             CceECCCCCEEEEEEEeeecC------------------------CCCcceeceECCCCcceeeeeecccccceecccee
Confidence            345778999999999974210                        122488888632111111       01111  124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +|+.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeee
Confidence            6888876444 67899999999999999999753

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.58  E-value=3.1e-07  Score=56.68  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEee--cCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVIT--NNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~~--~~~   88 (238)
                      -.+++|+++.|+|.++...-                        ....+.|+++.....+..-       ...+.  -.+
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~------------------------~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kg   65 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSF------------------------SDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKS   65 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCC------------------------SSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTT
T ss_pred             cEECCCCCEEEEEEEccccC------------------------ccCcceeeeECCCccceeeeeccccccchhccceee
Confidence            35778999999999975311                        0224788886321111111       11111  246


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ||.+..... +.+.|.|.+++.+|++.|+|..
T Consensus        66 RftiS~D~s~nt~~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          66 RVTISVDTSKNQFSLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEeccCchheecccccccccccccEEEEEe
Confidence            888887544 6778999999999999999954

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.58  E-value=5.6e-07  Score=55.60  Aligned_cols=82  Identities=16%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--   84 (238)
                      +..-.+++|+++.|+|.++...   +.                     ...+.|+++........-..+        +  
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~   63 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYS---FT---------------------SYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQ   63 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSC---GG---------------------GSEEEEEEECTTSCEEEEEEEETTTCCEEECG
T ss_pred             cCCcEECCCCCEEEEEEEcCCC---cc---------------------CCCceeeEeCCCCceeeeeeecCccccccccc
Confidence            4455689999999999997431   10                     124888886321111111111        1  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .-.+||.+..... +.+.|.|.+++.+|++.|+|...
T Consensus        64 s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          64 KFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeEeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            1246888876544 67789999999999999999764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.3e-07  Score=56.36  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|.. .|..|++++|.|....                           +...+.|+|++.........     
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~~---------------------------~~~~f~l~k~g~~~~~~~~~-----   52 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAIR---------------------------EAYLTQLMIIKNSTYREIGR-----   52 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCCT---------------------------TCSEEEEEEEETTEEEECSE-----
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCCC---------------------------CCcEEEEEECCCcCceeccc-----
Confidence            46777776665 5789999999998642                           12347888865432111100     


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                          ...........+.|.+++.+|+|.|.|...+..
T Consensus        53 ----~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~   85 (99)
T d1ucta1          53 ----RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   85 (99)
T ss_dssp             ----ECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ----cccCCCCceEEEEecCCCHHHCceEEEEEECCC
Confidence                000001122378999999999999999986543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.57  E-value=3.2e-07  Score=56.91  Aligned_cols=81  Identities=17%  Similarity=0.341  Sum_probs=51.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~--   84 (238)
                      .....+++|+++.|+|.+++..   ++                     ...+.|+++.....+..-        ...+  
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~---~s---------------------~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~   62 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFN---IK---------------------DTYMHWVKQRPEQGLEWIGRIDPANGNSKYVP   62 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC---GG---------------------GSEEEEEEECTTCCCEEEEEEETTTTEEEECG
T ss_pred             ECCceECCCCCEEEEEEEecCC---CC---------------------CCCcceeeECCCCccccccccCCcCCccccch
Confidence            3445588999999999987421   10                     124889886321111110        1111  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 ~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr   98 (121)
T d1j05b_          63 KFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAP   98 (121)
T ss_dssp             GGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhccceEEEeecCCceeeecccccCcCcceEEEeEe
Confidence            1245888776433 5678999999999999999975

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.56  E-value=4.7e-07  Score=55.63  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe-
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI-   84 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~-   84 (238)
                      .+....+++|+++.|+|.++...   ++                     ...+.|+++..-..+..-.        ..+ 
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s---~s---------------------~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya   61 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYT---FT---------------------NYWMHWIKQRPGQGLEWIGAIYPGNSATFYN   61 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSC---GG---------------------GSEEEEEEEETTTEEEEEEEEETTTTEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcccC---CC---------------------CCceEeeeeCCCCcceeeEccCccccccccc
Confidence            34455678999999999997421   11                     2247888852111111111        111 


Q ss_pred             -ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 -TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 -~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                       .-.+|+.+..... +.+.|+|.+++.+|++.|+|.-
T Consensus        62 ~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          62 HKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceeeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence             1235777776443 6678999999999999999964

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-07  Score=60.28  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=55.1

Q ss_pred             ceeecCCCcEEEEEEEccccC----CeEEEEeCCCee------eE-eecC-------CCCCcceEEE------eeceEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPT----PKITWRREDNKE------II-VRSN-------PPSSQKVFSV------ESEVLSL  202 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~----~~~~W~~~~~~~------~~-~~~~-------~~~~~~~~~~------~~~~l~i  202 (238)
                      .+.+.+|+++.|.|.....+.    ..+.|++.....      .. ....       .....+....      ....|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            356788999999999865332    258998632210      00 0000       1111111111      1247999


Q ss_pred             EEeecCCCeEEEEEeeeCCCCCccceEEEEEE
Q psy7941         203 TKVTRSEMGAYQCIAANGVPPTVSKRLMLHVH  234 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~n~~g~~~~~~~~l~V~  234 (238)
                      .+++.+|+|.|.|.+.+..| ...+.+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~-~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPG-VANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCC-eEEeEEEEEEE
Confidence            99999999999999999877 44777888775

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.55  E-value=6.2e-07  Score=54.96  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~   85 (238)
                      ....+++|+++.|+|.++...-                        ....+.|+++-.......-..        .+  .
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~------------------------~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s   63 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSF------------------------TTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQK   63 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCS------------------------SSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTT
T ss_pred             CCceECCCCCEEEEEEEcCCCC------------------------CCCceeeeeeCCCCcceeeeccCccccccccccc
Confidence            3445678999999999985311                        123488988532111111111        11  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      -.+||.+..... +...|+|.+++.+|++.|+|..
T Consensus        64 ~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          64 FKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            246888876544 6778999999999999999965

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-07  Score=57.51  Aligned_cols=72  Identities=14%  Similarity=0.316  Sum_probs=47.0

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecC-------CCCCcceEE------EeeceEEEEEeecCCCeEEE
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSN-------PPSSQKVFS------VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~-------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +...+|++++|.|.........+.|++...........       .....+...      ..+.+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            45678999999999876666689999854432221111       111111111      11236999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99964

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=3.3e-07  Score=56.21  Aligned_cols=80  Identities=16%  Similarity=0.302  Sum_probs=51.6

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~   85 (238)
                      ....+++|+++.|+|.++...   +.                     ...+.|+|+.....+..-..        .+  .
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s---~~---------------------~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~   63 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYT---FT---------------------DFSMHWVNQAPGKGLNWMGWVNTETGEPTYADD   63 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEECTTTCCEEECGG
T ss_pred             CCceECCCCCEEEEEEEcCCC---CC---------------------CCceeccccCCCccceeeeecCcccccchhhhh
Confidence            345678999999999997421   10                     12478888632111111111        11  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        64 ~kgRftisrD~s~~tvyL~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          64 FKGRFAFSLETSASTAYLQINSLKNEDTATYFCAR   98 (118)
T ss_dssp             GSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeeEEEecCCceeEEeeeeecccCcceEEEEee
Confidence            246888876443 6778999999999999999954

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.54  E-value=3.2e-07  Score=57.04  Aligned_cols=80  Identities=21%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe--ecCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI--TNNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~--~~~~   88 (238)
                      ..+++|+++.|+|.++...                      .......+.|+|+........-       ....  .-.+
T Consensus        10 ~~vkpg~sv~LsC~~SG~s----------------------~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~   67 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFS----------------------LSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKS   67 (123)
T ss_dssp             SEECTTCCEEEEEEEESSC----------------------TTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGG
T ss_pred             ceECCCCCeEEEEEEcCCc----------------------cCCCCCeeeccccCCCcceEeeeeecCCccccccceeeE
Confidence            4577899999999987421                      0111224789885211111110       0011  1135


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        68 Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr   99 (123)
T d1r0ah1          68 RLTVSKDTSNNQAFLNMMTVETADTAIYYCAQ   99 (123)
T ss_dssp             GEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEccccccceeEEcceeecccccceEEeecc
Confidence            888776433 5678999999999999999975

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.54  E-value=3.9e-07  Score=55.81  Aligned_cols=81  Identities=17%  Similarity=0.366  Sum_probs=52.5

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--~   85 (238)
                      ....+++|+++.|+|.++...   +.                     ...+.|+|+........-..+        +  .
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s   63 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFN---IK---------------------EYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPK   63 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSC---GG---------------------GSEEEEEEECTTSCEEEEEEECTTTCCEEECTT
T ss_pred             CCceECCCCCEEEEEEEcCCC---Cc---------------------CCceEcceeCCCcceEeeeeccccccccccccc
Confidence            345688999999999998431   11                     224888886322111111111        1  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+.... .+.+.|++.+++.+|++.|+|...
T Consensus        64 ~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          64 FQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             TTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeeEEEEeccccceEEecccccCCCCceEEEEeec
Confidence            24688887644 367789999999999999999653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.53  E-value=8.1e-07  Score=54.77  Aligned_cols=79  Identities=16%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe--ecCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI--TNNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~--~~~~   88 (238)
                      -.+++|+++.|+|.++...-                        ....+.|+|+..-.....-       ...+  .-.+
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~------------------------s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kg   64 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTL------------------------CTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAG   64 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTT------------------------CCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBT
T ss_pred             ceECCCCCeEEEEEEcCCCc------------------------cCCceeeeeeCCCCcceeeeecccccchhhhhhhhc
Confidence            45789999999999874211                        1224889986421111110       1111  1246


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 R~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          65 RFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPS   97 (119)
T ss_dssp             TEEEEECSSTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEecccCCcceecccccCCcCCcceEeeeec
Confidence            888876543 67789999999999999999764

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.53  E-value=1.9e-07  Score=56.47  Aligned_cols=76  Identities=17%  Similarity=0.336  Sum_probs=48.1

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-------eeeEe--ecCccE
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-------HEHVI--TNNARL   90 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-------~~~~~--~~~~~~   90 (238)
                      +++|+++.|+|.++..   .++                     ...+.|+++..-..+..       ....+  .-.+|+
T Consensus         5 vkPG~sl~LsC~~SG~---~~~---------------------~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~   60 (107)
T d1sjva_           5 VQAGESLKLSCAASGN---TFS---------------------GGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRF   60 (107)
T ss_dssp             CCTTCCEEEEECCCC-----------------------------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCE
T ss_pred             ecCCCCcEEEEEECCC---Ccc---------------------CCcEEEEEeCCccceeeeeeeeeccccccccccccce
Confidence            5789999999998642   111                     22478888632111101       01111  124688


Q ss_pred             EEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          91 SVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        91 ~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+..... +.+.|+|.+++.+|++.|+|..
T Consensus        61 tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          61 TISRDNAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             EEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             EEecCCceeEEEEeecCCCcccceeeeEec
Confidence            8887544 6678999999999999999965

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.52  E-value=8.2e-07  Score=55.47  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------E--
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------V--   83 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~--   83 (238)
                      .+....+++|+++.|+|.++...   +                     ....+.|+|+........-..        .  
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~---~---------------------~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~   60 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGT---F---------------------SMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYA   60 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSC---C---------------------TTCEEEEEEECTTSCEEEEEEEEGGGTEEEEC
T ss_pred             ccCCceECCCCCeEEEEEEeCCC---c---------------------cCCCcceEEeCCccCcEEEeecCCcccccccc
Confidence            34445688999999999997421   0                     022478888632211111111        1  


Q ss_pred             eecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          84 ITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..-.+|+.+...+. +...|+|.+++.+|++.|+|...
T Consensus        61 ~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          61 QKFRGRVTFTADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             GGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeeeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            11245888876544 67789999999999999999753

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.52  E-value=1e-06  Score=54.76  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=52.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--   84 (238)
                      +....+++|+++.|.|.++...-.                        ...+.|+++..-..+..-.        ..+  
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~------------------------~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~   61 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFS------------------------NYWIEWVKQRPGHGLEWIGKILPGGGSNTYND   61 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTT------------------------TEEEEEEEECTTSCEEEEEEEETTTTEEEECG
T ss_pred             ECCceECCCCCeEEEEEEccCCCC------------------------CCCCcceeeCCCccceeeeecCccccchhhhh
Confidence            344568899999999999853111                        1237888853211111111        111  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+.... .+.+.|+|.+++.+|++.|+|..
T Consensus        62 s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          62 KFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhccceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            124788887644 46789999999999999999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.52  E-value=8.3e-07  Score=54.58  Aligned_cols=81  Identities=17%  Similarity=0.307  Sum_probs=52.5

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--~   85 (238)
                      ..-.+++|+++.|+|.++...-.                        ...+.|+++........-.        ..+  .
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~------------------------~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s   63 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFT------------------------DYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEK   63 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG------------------------GSEEEEEEECTTSCEEEEEEEETTTTEEEECGG
T ss_pred             CCceECCCCCEEEEEEEcCCCCc------------------------CCccccceECCCccceeeeecCCcccceeeccc
Confidence            34458899999999999853111                        1247888863211111111        111  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        64 ~kgRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          64 FKGRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             GBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            246888876544 67899999999999999999753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.51  E-value=5.3e-07  Score=56.49  Aligned_cols=79  Identities=24%  Similarity=0.429  Sum_probs=49.9

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCC--cee--eeeee---eeEee--cCcc
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKAD--TKA--VLAIH---EHVIT--NNAR   89 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~~--~~~~~---~~~~~--~~~~   89 (238)
                      .+++|+++.|+|.+++..                      .......+.|+|+.  ..+  +....   .....  -.+|
T Consensus        11 lvkPg~sv~LsC~~SG~s----------------------~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~R   68 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFS----------------------LSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSR   68 (126)
T ss_dssp             EECTTCCEEEEEEEESSC----------------------TTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTT
T ss_pred             eECCCCCEEEEEEEeCCc----------------------cCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEe
Confidence            577899999999987421                      01112347898752  111  11110   11111  1458


Q ss_pred             EEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          90 LSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        90 ~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      |.+...+. +.+.|+|.+++.+|++.|+|..
T Consensus        69 ftis~d~s~~t~~L~i~~l~~eDtAvYyCAr   99 (126)
T d1etzb1          69 LTVSKDTSSNQVFLKITSVDTSDTATYHCAR   99 (126)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEEecccCCcEEEcceecccccccceEEEEE
Confidence            88776544 5678999999999999999975

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.51  E-value=5.8e-07  Score=55.17  Aligned_cols=82  Identities=13%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee-
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI-   84 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~-   84 (238)
                      .+....+++|+++.|+|.++...-.                        ...+.|+|+........-..        .+ 
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~------------------------~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~   61 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFT------------------------TYAMHWVKQSHAKSLEWIGLISTYSGYTNYN   61 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG------------------------GSEEEEEEECSSSSEEEEEEECTTTCCEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC------------------------CCceecceeCCCcccccccccCCcCCcchhh
Confidence            3444568899999999999743111                        12478888632211111111        11 


Q ss_pred             -ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEE
Q psy7941          85 -TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 -~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                       .-.+||.+.... .+...|+|.+++.+|++.|+|.-
T Consensus        62 ~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          62 QKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             GGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhcccEEEecccCcceEeecccccccCcceeeeEEE
Confidence             114688877643 36778999999999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.51  E-value=1.6e-06  Score=53.05  Aligned_cols=80  Identities=19%  Similarity=0.363  Sum_probs=51.1

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeee-ee------eeeEe--ecC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVL-AI------HEHVI--TNN   87 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~------~~~~~--~~~   87 (238)
                      ...+++|+++.|+|.+++..-                        ....+.|+++..-..+ ..      ....+  .-.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~------------------------~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~k   64 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSL------------------------TGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALK   64 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCT------------------------TSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTG
T ss_pred             CceECCCCCeEEEEEEccccc------------------------CCCCCccceECCCcceeeeeecCccccceeccccc
Confidence            345788999999999985311                        0224788886321111 11      01111  124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +|+.+..... +.+.|+|.+++.+|++.|+|.-.
T Consensus        65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEeccCCCceEEcceeeeeeccceEEEEEEe
Confidence            5788776433 67789999999999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.50  E-value=6e-07  Score=55.63  Aligned_cols=80  Identities=20%  Similarity=0.413  Sum_probs=51.6

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~~   86 (238)
                      .-.+++|+++.|+|.++...   ++                     ...+.|+++..-.....-..        .+  .-
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s---~s---------------------~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~   64 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFT---FS---------------------NFGMHWVRQAPEKGLEWVAYISSGGSSINYADTV   64 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECSSSCEEEEEEECSSSSCEEECGGG
T ss_pred             CceECCCCCeEEEEEEcCCC---Cc---------------------CCceEccccCCCcceeeeeecCccccccccccee
Confidence            34577899999999998431   11                     22478888632111111111        11  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 kgRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          65 KGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEeccCCccEeEeeeeeecccCceEEEeecC
Confidence            46888876443 66789999999999999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.50  E-value=7.5e-07  Score=54.81  Aligned_cols=81  Identities=22%  Similarity=0.374  Sum_probs=50.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE---------eecC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV---------ITNN   87 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~---------~~~~   87 (238)
                      ...+++|+++.|+|.+++..   +.                    ....+.|+|+........-..+         ..-.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s---~~--------------------s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~k   65 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYS---IT--------------------SDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLK   65 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSC---TT--------------------SSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGT
T ss_pred             CcEECCCCCEEEEEEEcccc---cc--------------------CCCccccceECCCcceeeeeeccccccchhchhcc
Confidence            34577899999999998531   00                    0113678875211111111111         1124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +|+.+..... +.+.|.|.+++.+|++.|+|...
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeEe
Confidence            6888876544 67789999999999999999653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.49  E-value=1.2e-06  Score=53.86  Aligned_cols=82  Identities=18%  Similarity=0.296  Sum_probs=51.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--   84 (238)
                      .....+++|+++.|+|.++...=                        ....+.|+|+..-.....-.        ..+  
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~------------------------~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~   62 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTF------------------------SSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQ   62 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCS------------------------TTCEEEEEEECTTSCEEEEEEEETTTCCEEECT
T ss_pred             ECCceECCCCCEEEEEEEccccC------------------------CCCCCcccEECCCCceEeeeeccccccchhhhh
Confidence            34456889999999999975210                        01247888863211111111        111  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .-.+|+.+..... +...|.|.+++.+|++.|+|.-.
T Consensus        63 ~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          63 HFTDKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             TSTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             heeeeEEEEecCccceEEecccccCCCcceEEEEeee
Confidence            1235777765433 66789999999999999999653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.49  E-value=1.2e-06  Score=54.01  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=52.2

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~   85 (238)
                      ..-.+++|+++.|+|.++...   ++                     ...+.|+++........-..        .+  .
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~---~~---------------------~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s   63 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYT---FS---------------------DFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEK   63 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEEETTTTEEEECTT
T ss_pred             CCceECCCCCEEEEEEEcCCC---Cc---------------------CCceEccccCCccceeeeeecCCcccccccccc
Confidence            344578899999999998421   11                     12478888632111111111        11  1


Q ss_pred             cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+.... .+.+.|+|.+++.+|++.|+|...
T Consensus        64 ~kgRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          64 FRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            24688887744 467789999999999999999753

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.49  E-value=7.5e-07  Score=54.81  Aligned_cols=81  Identities=15%  Similarity=0.283  Sum_probs=51.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--   84 (238)
                      .....+++|+++.|+|.++...   +.                     ...+.|+++........-..        .+  
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~   62 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYI---ST---------------------DHAIHWVKQRPEQGLEWIGYISPGNGDIKYNE   62 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECSSSCEEEEEEECTTTCCEEECG
T ss_pred             ECCceECCCCCEEEEEEEccCc---cc---------------------CCCCccceeCCcccceeeeecCCcccchhhhh
Confidence            3345578999999999997531   10                     22478888632111111111        11  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          63 KFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             GGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhcceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence            1245888876443 5679999999999999999965

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.49  E-value=1.4e-06  Score=54.22  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------eec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------ITN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~   86 (238)
                      .-.+++|+++.|+|.++...   +                     ....+.|+++.....+..-..+          ..-
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s---~---------------------~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~   64 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGS---F---------------------STYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRF   64 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSC---S---------------------TTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGG
T ss_pred             CceECCCCCEEEEEEEcCCC---C---------------------CCCCeEEEEeCCCCcceeeeccCccccccccccee
Confidence            34578899999999998531   0                     1224788885322111111111          112


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+|+.+..... +.+.|+|.+++.+|++.|+|.-.
T Consensus        65 kgR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          65 QGRITITADRSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEEeccCccceEeeeecccCcccceEEEEeec
Confidence            46888877544 67799999999999999999753

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.48  E-value=1.4e-06  Score=53.75  Aligned_cols=79  Identities=15%  Similarity=0.346  Sum_probs=51.5

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--~~   86 (238)
                      ...+++|+++.|+|.++...   +                     ....+.|+++.....+..-..+        +  .-
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s---~---------------------s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~   64 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYA---Y---------------------TYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSV   64 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCS---S---------------------CCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGG
T ss_pred             CceECCCCCeEEEEEEcCCC---c---------------------ccCceeeccCCCCCceeeeeecCCcccccccccce
Confidence            34578999999999997421   1                     1224788886421111111111        1  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        65 kgRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          65 KGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TTTEEEECTTSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEeEEEeecCCceEEEEEeeeccccceeEEeeec
Confidence            45888876544 6778999999999999999975

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=7.2e-07  Score=54.59  Aligned_cols=80  Identities=19%  Similarity=0.345  Sum_probs=51.2

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe--ecC
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI--TNN   87 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~--~~~   87 (238)
                      ...+++|+++.|+|.++...-                        ....+.|+++-.......-       ...+  .-.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~------------------------~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~k   64 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPL------------------------TTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALK   64 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCT------------------------TTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTS
T ss_pred             CceECCCCCeEEEEEEcCCCc------------------------cCCceEcccCCCCcceeeeeccccccccccccccc
Confidence            345789999999999974210                        0124788885321111110       0111  124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceeeccccccccCcceEEEEecc
Confidence            6888876544 56799999999999999999653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.48  E-value=6.8e-07  Score=55.84  Aligned_cols=81  Identities=17%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------I   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~   84 (238)
                      +....+++|+++.|+|.++..   .++                     ...+.|+++........-..+          .
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~---~~s---------------------~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~   62 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGG---TFS---------------------NYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQ   62 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSS---CGG---------------------GCCEEEEEECTTCCCEEEEEEETTTTEEEECG
T ss_pred             ECCceECCCCCEEEEEEEcCC---CCC---------------------CCceEccccCCCcceeeeeecccccccccccc
Confidence            334457899999999998742   111                     224888886322111111111          1


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr   98 (130)
T d1rzga1          63 RFQGRVSITADESTSTAYMELSSLRSEDTAVFYCAS   98 (130)
T ss_dssp             GGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccceEEecccccceEEeeeeecCCCccEEEEEEE
Confidence            1246888776544 6778999999999999999975

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.47  E-value=9.5e-07  Score=54.25  Aligned_cols=81  Identities=17%  Similarity=0.346  Sum_probs=52.3

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe--e
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI--T   85 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~--~   85 (238)
                      ..-.+++|+++.|+|.+++..   ++                     ...+.|+|+........-        ...+  .
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~---~s---------------------~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s   63 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFD---FS---------------------KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPS   63 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEECTTSSCEEECTT
T ss_pred             CCceECCCCCEEEEEEECCcc---cc---------------------CCceeeeeecCCcceeeeeecCccccccccccc
Confidence            344678999999999997531   11                     224788875321111111        1111  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        64 ~kgRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~   99 (118)
T d2fbjh1          64 LKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARL   99 (118)
T ss_dssp             TTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeeEEEeecCccceeeccccccCCCcceEEEeeEe
Confidence            246888877444 66789999999999999999754

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.47  E-value=8.9e-07  Score=55.34  Aligned_cols=95  Identities=19%  Similarity=0.312  Sum_probs=57.9

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~~   86 (238)
                      ...+++|+++.|+|.+++..=                        ....+.|+++.....+..-..        .+  .-
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~------------------------~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~   64 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTF------------------------SSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSV   64 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCT------------------------TTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTT
T ss_pred             CceECCCCCeEEEEEEcCCCC------------------------cCCceeccccCCCCceeeeeccCCccccccccccc
Confidence            345789999999999985310                        022488888632111111111        11  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEecCCC---cceeeEEEEEc
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVNTNPM---TKQMAFLEVVI  135 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~  135 (238)
                      .+||.+..... +.+.|.|.+++.+|++.|+|.......   .-..+.++|..
T Consensus        65 kgRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsS  117 (135)
T d1ieha_          65 KGRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYSGGALDAWGQGTQVTVSS  117 (135)
T ss_dssp             TTTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBSSSSBCCCSCCEEEEECS
T ss_pred             eEeEEEeccCCCceeEecEeeeCcccceeeEEEEecCCccceeCCCEEEEEEC
Confidence            46888877544 667999999999999999997643221   12334555653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=5.1e-07  Score=54.37  Aligned_cols=75  Identities=16%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeE--eecCccEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHV--ITNNARLS   91 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~--~~~~~~~~   91 (238)
                      +|+++.|+|.++...   +                     ....+.|+|+.....+..-        ...  ..-.+||.
T Consensus         1 PG~sl~LsC~~SG~s---~---------------------~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~t   56 (103)
T d1oari_           1 PGASVKLSCKASGYT---F---------------------TSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKAT   56 (103)
T ss_dssp             CCCCEEEEEECCSSC---S---------------------TTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEE
T ss_pred             CCCCeEEEEEEECCC---h---------------------hcCceeeEEeCCCCceEeeeeccccccccccccceeeceE
Confidence            589999999997421   0                     0124889986421111111        111  11246888


Q ss_pred             EEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          92 VTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        92 ~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +..... +.+.|+|.+++.+|++.|+|...
T Consensus        57 iS~D~s~~t~~L~~~sL~~eDTAvYYCAr~   86 (103)
T d1oari_          57 LTVDKPSSTAYMQLSSLTSEDSAVYYCARM   86 (103)
T ss_dssp             EEC----CEEEEEECCC---CCSEEEEEEE
T ss_pred             EeccccccEEEeeeeeccccccEEEEeEEE
Confidence            776443 66789999999999999999753

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.47  E-value=1.1e-06  Score=54.75  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--   84 (238)
                      +....+++|+++.|+|.+++..   ++                     ...+.|+++.....+..-..        .+  
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~   62 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYS---FT---------------------SYWIHWLKQRPDQGLEWIGYIDPATAYTESNQ   62 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTCCEEEEEEEETTTTEEEECG
T ss_pred             ECCceECCCCCEEEEEEEccCC---CC---------------------CCCCccccCCCCccceeeeecCCccccccccc
Confidence            3445678999999999997421   10                     12488888632211111111        11  


Q ss_pred             ecCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .-.+|+.+.... .+.+.|+|.+++.+|++.|+|...
T Consensus        63 s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          63 KFKDKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             GGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            123588876654 467789999999999999999753

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.47  E-value=9.9e-07  Score=54.79  Aligned_cols=79  Identities=18%  Similarity=0.342  Sum_probs=51.6

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe--ecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI--TNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~--~~~   87 (238)
                      -.+++|+++.|+|.++...-                        ....+.|+|+........-        ...+  .-.
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~------------------------~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~k   64 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTD------------------------SIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVK   64 (124)
T ss_dssp             EECCTTCCEEEEEEEESCST------------------------TCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGT
T ss_pred             ceECCCCCeEEEEEEcCccc------------------------ccccccccccCCccceEEEeecccccccceeccccc
Confidence            35778999999999985321                        1224889886421111111        1111  124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+...+. +.+.|+|.+++.+|++.|+|...
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeec
Confidence            6888876543 67789999999999999999763

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.47  E-value=5.6e-07  Score=55.72  Aligned_cols=79  Identities=14%  Similarity=0.369  Sum_probs=50.1

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeeee----eeEe--ecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAIH----EHVI--TNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~~----~~~~--~~~   87 (238)
                      ..+++|+++.|+|.++...   +                     ....+.|+++..  .+  +....    ...+  .-.
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s---~---------------------~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~   65 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYT---F---------------------TTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFK   65 (119)
T ss_dssp             CEECTTEEEEEEEEEETCC---S---------------------SSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTT
T ss_pred             ceECCCCCEEEEEEEeccC---C---------------------CCCCcceeeecCCCcceEeeccCCcccccchhhhhc
Confidence            3677899999999987421   0                     022488998622  11  11111    0111  123


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +|+.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEEe
Confidence            5888776444 56789999999999999999653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.47  E-value=1.3e-06  Score=54.14  Aligned_cols=81  Identities=14%  Similarity=0.238  Sum_probs=52.4

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------e--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------I--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~--   84 (238)
                      +....+++|+++.|+|.++...-.                        ...+.|+|+........-..+        +  
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~------------------------~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~   62 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFS------------------------DYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSP   62 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCEEEEEEEETTTTEEEECT
T ss_pred             ECCceECCCCCEEEEEEEcCCCCc------------------------CCcCccceeCCCcceeeeeecCcccccccccc
Confidence            344567899999999999842110                        123788885322111111111        1  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          63 SFEGQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             TTTTTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cceeeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence            1246888776544 6779999999999999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.46  E-value=7.2e-07  Score=55.43  Aligned_cols=82  Identities=17%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe-
Q psy7941          14 PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI-   84 (238)
Q Consensus        14 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~-   84 (238)
                      .+....+++|+++.|+|.++...   +.                     ...+.|+++-.......-        ...+ 
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya   61 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYR---FS---------------------NFVIHWVRQAPGQRFEWMGWINPYNGNKEFS   61 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCCEEEEEECTTTCCEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCC---CC---------------------CCCEEEEEeCCCCcceeeeecCccccccccc
Confidence            34455688999999999998521   10                     124788885321111111        1111 


Q ss_pred             -ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 -TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 -~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                       .-.+|+.+..... +.+.|.|.+++.+|++.|+|.-
T Consensus        62 ~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          62 AKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             TTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhccccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence             1246888876443 6778999999999999999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.46  E-value=1.1e-06  Score=54.01  Aligned_cols=79  Identities=18%  Similarity=0.376  Sum_probs=50.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee----------Ee--e
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH----------VI--T   85 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~----------~~--~   85 (238)
                      -.+++|+++.|+|.++...-                        ....+.|+++........-..          .+  .
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~------------------------~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s   65 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTF------------------------SDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAES   65 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCT------------------------TTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTT
T ss_pred             ceECCCCCeEEEEEECCccC------------------------cCCceEeeeeCCCcceeeeeeccccccccceeechh
Confidence            34788999999999975311                        122478888532111111000          01  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        66 ~kgRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          66 VKGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceecceeecccccceeccceeeccCCCceEEEeeEe
Confidence            135888876444 67899999999999999999753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.4e-07  Score=55.53  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccc
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK  227 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~  227 (238)
                      .+..|++++|.|.+. .+...+.|++++..........   ..........+.|.++..+|.|.|.|...+... +..+.
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~---~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sd   92 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRR---LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD   92 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEE---CC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecccc---ccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCC
Confidence            477899999999764 3455889988543222111000   000111223588999999999999999998775 34577


Q ss_pred             eEEEEE
Q psy7941         228 RLMLHV  233 (238)
Q Consensus       228 ~~~l~V  233 (238)
                      .+.|.|
T Consensus        93 pl~L~V   98 (99)
T d1ucta1          93 TLELVV   98 (99)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            777766

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.46  E-value=1.6e-06  Score=53.95  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--~~   86 (238)
                      ...+++|+++.|+|.++...-.                        ...+.|+++........-.        ..+  .-
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~------------------------~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~   64 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFI------------------------RYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHL   64 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGG------------------------GEEEEEEEECTTSCCEEEEEEETTTTEEEECTTT
T ss_pred             CceECCCCCEEEEEEEcCCCcc------------------------CCCcccceeCCCcceeeeeecCCcccccccccce
Confidence            3457899999999999853211                        1237888863211111111        111  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+||.+...+. +.+.|+|.+++.+|++.|+|...
T Consensus        65 kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          65 QGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGV   99 (128)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEEeecCCCceEEeeeeeccccCceEEEEeEE
Confidence            46888887544 67789999999999999999764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=7.3e-07  Score=50.44  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=57.8

Q ss_pred             CceeecCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecCCCCCcceEEE----eeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSNPPSSQKVFSV----ESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +.-++..|+.+.|.|.+.- ...|.++|-+-++..................    .--.|.+..+-.+|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3456778999999999965 6788999988666433222110000000000    1115777788899999999999877


Q ss_pred             CCCCccceEEEEE
Q psy7941         221 VPPTVSKRLMLHV  233 (238)
Q Consensus       221 ~g~~~~~~~~l~V  233 (238)
                      .+-..++++++.|
T Consensus        91 s~vieSHSvti~V  103 (104)
T d1xaua_          91 SQVINSHSVTIHV  103 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             hhheecceEEEEe
Confidence            7756677777765

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.46  E-value=8.4e-07  Score=54.85  Aligned_cols=80  Identities=14%  Similarity=0.358  Sum_probs=51.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee----------eEe--
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE----------HVI--   84 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~----------~~~--   84 (238)
                      .-.+++|+++.|+|.+++..-.                        ...+.|+++........-.          ..+  
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~------------------------~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~   64 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFT------------------------DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSP   64 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECT
T ss_pred             CceECCCCCEEEEEEEcCCCCc------------------------CCccCccccCCCcceeeeeeccccccCCcchhch
Confidence            3457889999999999753110                        1248899863211111100          011  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          65 SVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARD  101 (122)
T ss_dssp             TTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             heeecceeeeecccceeccceeeeccCcceEEEEEec
Confidence            1236888876544 66789999999999999999763

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.45  E-value=8.8e-07  Score=54.77  Aligned_cols=79  Identities=19%  Similarity=0.391  Sum_probs=51.0

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee----------eeEeecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH----------EHVITNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~----------~~~~~~~   87 (238)
                      -.+++|+++.|+|.+++..   ++                     ...+.|+|+.....+..-          .....-.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s---~s---------------------~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~k   65 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFT---FS---------------------SYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVR   65 (121)
T ss_dssp             EEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGT
T ss_pred             ceECCCCCeEEEEEEcCcC---Cc---------------------CCceEcceeCCCcceeeeeecCCcccccccchhee
Confidence            4578899999999997431   10                     123788875311111110          0111224


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            6888877544 67799999999999999999653

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.44  E-value=1.6e-06  Score=53.70  Aligned_cols=82  Identities=12%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             eeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc--ee--eeee-----ee
Q psy7941          11 FLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT--KA--VLAI-----HE   81 (238)
Q Consensus        11 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~--~~~~-----~~   81 (238)
                      +.+.|..+.+.+|++++|+|...+...                          ..+.||++..  .+  +...     ..
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~--------------------------~~~~WYrQ~~g~~~~~l~~~~~~~~~~   57 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQY--------------------------PWMSWYQQDLQKQLQWLFTLRSPGDKE   57 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTC--------------------------CEEEEEEECTTCCEEEEEECCSTTCEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCC--------------------------CcEEEEeECCCCCccccceeccccccc
Confidence            456788888999999999999864322                          2489999732  11  1110     01


Q ss_pred             eEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          82 HVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .......++.......  ..|.|..++.+|++.|.|...
T Consensus        58 ~~~~~~~~f~~~~~~~--~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          58 VKSLPGADYLATRVTD--TELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             EEEETTEEEEEEEEET--TEEEEEEESCCSCEEEEEEEE
T ss_pred             cccccccccccccccc--cEEEEecCCccCCccEEEEEe
Confidence            1111234565543222  367788888999999999864

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-06  Score=55.22  Aligned_cols=34  Identities=9%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             CccEEEEEc-CCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHN-DANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ..+++.... ....++|.|.+++.+|+|.|.|.+.
T Consensus        63 ~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~   97 (118)
T d1yjdc1          63 KTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIE   97 (118)
T ss_dssp             SSSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEECCCCeEEEEECCCCcccCeEEEEEEe
Confidence            345555443 3457799999999999999999874

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.43  E-value=1.3e-06  Score=53.90  Aligned_cols=81  Identities=15%  Similarity=0.296  Sum_probs=52.2

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe--
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI--   84 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~--   84 (238)
                      .....+++|+++.|+|.++...   +.                     ...+.|+++-.......-        ...+  
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~   62 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYI---FT---------------------SYWIHWLKQSSGQGLEWIARIYPGTGGTYYNE   62 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSC---GG---------------------GSCEEEEEECSSSCCEEEEEEETTTTEEEECG
T ss_pred             eCCceECCCCCEEEEEEEcCCC---cc---------------------CCccccceECCCCceeeeeecccccccccccc
Confidence            3344578999999999998431   11                     124788885321111111        1111  


Q ss_pred             ecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          85 TNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .-.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          63 KFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFCTR   98 (124)
T ss_dssp             GGBTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             ccceeEEEEccCCcceEEecccccCCCcceEEEecc
Confidence            1246888876543 6778999999999999999975

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.43  E-value=3e-06  Score=53.37  Aligned_cols=81  Identities=20%  Similarity=0.359  Sum_probs=51.3

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCce--e--eeeee---eeE--eecCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTK--A--VLAIH---EHV--ITNNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~--~~~~~---~~~--~~~~~   88 (238)
                      -.+++|+++.|+|.++...                      .......+.|+++...  +  +....   ...  ..-.+
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~----------------------~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~   67 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFS----------------------LSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNT   67 (132)
T ss_dssp             SEECTTCCEEEEEEEESSC----------------------TTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTT
T ss_pred             eeECCCCCeEEEEEEeCCC----------------------cCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeee
Confidence            3577899999999987421                      0111234889986321  1  11110   001  11246


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        68 Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          68 RLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceecccccccEEEcccccCCcccceEEEEEEe
Confidence            888776443 56789999999999999999764

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.43  E-value=1e-06  Score=54.42  Aligned_cols=80  Identities=19%  Similarity=0.432  Sum_probs=51.0

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~~   86 (238)
                      ...+++|+++.|+|.+++..   +.                     ...+.|+|+........-..        .+  .-
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s---~~---------------------~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~   64 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFT---FS---------------------SYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTV   64 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTCCEEEEEEECTTSSCEECCTTT
T ss_pred             CceECCCCCEEEEEEECccc---Cc---------------------CCceEeeecCCCcceeeeeecCccccccccchhc
Confidence            34577899999999997431   10                     12378888632111111111        11  12


Q ss_pred             CccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+||.+.... .+.+.|+|.+++.+|++.|+|...
T Consensus        65 kgR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          65 KGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEEEecCcccccccceeeeccCcccceeEEec
Confidence            4588877643 366789999999999999999754

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.43  E-value=1.4e-06  Score=53.99  Aligned_cols=79  Identities=22%  Similarity=0.371  Sum_probs=51.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee--------eEe--ecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE--------HVI--TNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~--~~~   87 (238)
                      -.+++|+++.|+|.+++..-.                        ...+.|+++........-.        ..+  .-.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~------------------------~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~k   65 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRIS------------------------AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVK   65 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTT
T ss_pred             ceECCCCCeEEEEeECCccCc------------------------CcccCccccCCCcceeeeeecCccccccccccccc
Confidence            457899999999999753211                        2248898863211111111        111  124


Q ss_pred             ccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeec
Confidence            6888876544 67899999999999999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.43  E-value=1.7e-06  Score=53.01  Aligned_cols=79  Identities=16%  Similarity=0.387  Sum_probs=50.8

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-------eeEe--ecCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-------EHVI--TNNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-------~~~~--~~~~   88 (238)
                      -.+++|+++.|+|.+++..   +                     ..-.+.|+++........-       ...+  .-.+
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~---~---------------------~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kg   65 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFT---L---------------------RTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKG   65 (118)
T ss_dssp             CEECTTCCEEEEEEEESSC---T---------------------TTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBT
T ss_pred             ceECCCCCeEEEEEECCCc---c---------------------cCCCcccccCCCCcceeeeeecccccchhhccccce
Confidence            3578899999999998531   1                     1224788886321111111       1111  1245


Q ss_pred             cEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          89 RLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        89 ~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      ||.+..... +.+.|+|.+++.+|++.|+|.-.
T Consensus        66 R~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          66 RFTISRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             TBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEeccccceeeeeccccccCCcceEEEeccc
Confidence            888876544 66789999999999999999653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.42  E-value=7.8e-07  Score=55.69  Aligned_cols=79  Identities=18%  Similarity=0.399  Sum_probs=50.7

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCcee----eeeee---------eeEe
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKA----VLAIH---------EHVI   84 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~----~~~~~---------~~~~   84 (238)
                      -.+++|+++.|+|.+++..   ++                     ...+.|+++....    +....         ...+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~---~s---------------------~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y   65 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDS---IG---------------------TYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRY   65 (127)
T ss_dssp             EECCTTCCEEEEEEEESSC---GG---------------------GSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEE
T ss_pred             ceECCCCCeEEEEEEcCCC---CC---------------------CCceEeeeeCCccceeEEEEEccccccCCCCccee
Confidence            3467899999999997421   11                     2248899863211    11111         0111


Q ss_pred             e--cCccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          85 T--NNARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        85 ~--~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .  -.+||.+.... .+.+.|+|.+++.+|++.|+|...
T Consensus        66 ~~~~kgR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          66 ADSVKGRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             CTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             chhhccceeEeccCCceEEEEeeecccccceeEEEEEEE
Confidence            1  13588877643 367789999999999999999764

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.42  E-value=2.1e-06  Score=53.42  Aligned_cols=79  Identities=19%  Similarity=0.389  Sum_probs=49.9

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--------eeEe--ecC
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--------EHVI--TNN   87 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--------~~~~--~~~   87 (238)
                      -.+++|+++.|+|.+++..                        .....+.|+++.....+..-        ...+  .-.
T Consensus         9 ~lvkPg~sl~LsC~~SG~~------------------------~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~k   64 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGAT------------------------SSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQ   64 (126)
T ss_dssp             EEECTTCCEEEEEECC-CT------------------------TTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTT
T ss_pred             ceECCCCCeEEEEEECCCC------------------------CcCCceEeeeeCCCcceEeeeccccccccccccccce
Confidence            4577899999999987421                        11234889886321111110        1111  113


Q ss_pred             ccEEEEEcC-CCeEEEEEcccCcccCeEEEEEEe
Q psy7941          88 ARLSVTHND-ANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        88 ~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      +||.+.... .+.+.|+|.+++.+|++.|+|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEee
Confidence            588877644 366789999999999999999753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=5.7e-07  Score=55.19  Aligned_cols=76  Identities=11%  Similarity=0.290  Sum_probs=48.4

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Cee-eEeecC----CCCCcce-E--EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKE-IIVRSN----PPSSQKV-F--SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~-~~~~~~----~~~~~~~-~--~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.|++..  ..+ ......    ....... .  ......|.|.+++.+|+|.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            45567889999999999876556679999732  111 111111    1111111 1  112347999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1c5cl1          88 CLQYAS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EecCcC
Confidence            987643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.41  E-value=1.4e-06  Score=54.29  Aligned_cols=80  Identities=24%  Similarity=0.461  Sum_probs=51.7

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE----------eec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV----------ITN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~   86 (238)
                      ...+++|+++.|+|.++...   +.                     ...+.|+++........-..+          ..-
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~---~~---------------------~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~   64 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFI---FS---------------------SYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSV   64 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEECTTSSCEEECGGG
T ss_pred             CceECCCCCeEEEEEECCCC---cc---------------------CCceeeeecCCCcceeeeeecccccccchhcccc
Confidence            34577899999999997421   11                     224788886321111111111          112


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|...
T Consensus        65 kgR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          65 KGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARD   99 (127)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEEeccCCccEEEeeeeeeeecceeEEEEEEe
Confidence            46888876544 67799999999999999999753

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.41  E-value=1.7e-06  Score=53.68  Aligned_cols=79  Identities=19%  Similarity=0.397  Sum_probs=51.4

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------E--eec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------V--ITN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~--~~~   86 (238)
                      .-.+++|+++.|+|.++...   ++                     ...+.|+++........-..        .  ..-
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~---~~---------------------~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~   64 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFT---FN---------------------DYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSV   64 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSC---GG---------------------GSCEEEEEECTTSCEEEEEEECTTSSSEEECGGG
T ss_pred             CceECCCCCeEEEEEECCcc---cc---------------------CCcceeceeCCCccceeeeecCcccccchhcccc
Confidence            34578899999999997421   11                     22478888632211111111        1  112


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+||.+...+. +.+.|+|.+++.+|++.|+|..
T Consensus        65 kgR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr   98 (126)
T d1dfbh1          65 KGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK   98 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEEeccCCCcEEEeeeeeeccCcceEEEEEe
Confidence            46888877544 6779999999999999999965

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.40  E-value=2.7e-06  Score=53.22  Aligned_cols=80  Identities=16%  Similarity=0.338  Sum_probs=52.0

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee--------Ee--ec
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH--------VI--TN   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~--------~~--~~   86 (238)
                      .-.+++|+++.|+|.+++..=.                        ...+.|+|+-.-..+..-..        .+  .-
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s------------------------~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~   63 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLN------------------------SHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKF   63 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCST------------------------TEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGG
T ss_pred             CceECCCCCEEEEEEEcCCCcc------------------------CCCCccceECCCCceEEEeecCCccccccccccc
Confidence            3458899999999999743110                        12378888532111111111        11  12


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      .+||.+...+. +...|++.+++.+|++.|+|...
T Consensus        64 kgR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          64 RGRVTISADESTRTVYLHLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccEEEEeccCcceeEEeeccCCCCCCEEEEeeec
Confidence            46888877544 67899999999999999999653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=4.5e-07  Score=55.74  Aligned_cols=76  Identities=16%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee-eEeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE-IIVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~-~~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|...+.....+.||+...  .+ ......    .........   .....|.|.++..+|+|.|.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence            455778899999999998765555799998321  11 111111    111111111   12247999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+...
T Consensus        88 Ca~~~~   93 (107)
T d1ospl1          88 CQQYWS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EeeccC
Confidence            987643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=7.6e-07  Score=54.75  Aligned_cols=76  Identities=21%  Similarity=0.415  Sum_probs=48.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e-e-eEeecC----CCCCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K-E-IIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~-~-~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.|++... . + +.....    ........   ......|.|.+++.+|+|.|.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            455778999999999997655556799997432 1 1 111111    11111111   112247999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1j1pl_          88 CQQANS   93 (107)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-06  Score=50.66  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=53.7

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC-CCccc
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP-PTVSK  227 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g-~~~~~  227 (238)
                      .+..|++++|.|... .+...+.|+++ +............    ......+.|.++..+|+|.|+|...+..+ +..+.
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~-g~~~~~~~~~~~~----~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd   87 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFE-GSLFAVDRPKPPE----RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN   87 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEET-TEEEEEECCSSCT----TCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCC
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEEC-CCCcceeEEccCC----CccEEEEEEeeeecCCCceEEEEeCCCCCccCCCC
Confidence            467899999999864 23557888884 4332211110000    11123588999999999999999988764 45678


Q ss_pred             eEEEEEE
Q psy7941         228 RLMLHVH  234 (238)
Q Consensus       228 ~~~l~V~  234 (238)
                      .+.|.|-
T Consensus        88 ~leL~VT   94 (95)
T d1olla1          88 LLDLVVT   94 (95)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            8888774

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=1e-06  Score=54.15  Aligned_cols=75  Identities=16%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Ceee-EeecC----CCCCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKEI-IVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~~-~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.||+..  ..+. .....    ........   ......|.|.++..+|+|.|.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy   87 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY   87 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence            45577889999999999876555579999732  1111 11110    10111111   112347999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1kcvl1          88 CGQSY   92 (107)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            98754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-06  Score=54.66  Aligned_cols=91  Identities=15%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             CCceeecCCCcEEEEEEEccc---cCCeEEEEeCCCe----eeEeecC---CCCCcceEEEee-----ceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDNK----EIIVRSN---PPSSQKVFSVES-----EVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~~----~~~~~~~---~~~~~~~~~~~~-----~~l~i~~~~~~d  209 (238)
                      +..+.+.+|++++|.|.....   ....+.|++....    .+.....   ............     ..|.|.+++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            456778899999999987432   2346889873311    1111111   111111111111     279999999999


Q ss_pred             CeEEEEEeeeCCCCCccceEEEEEEee
Q psy7941         210 MGAYQCIAANGVPPTVSKRLMLHVHCT  236 (238)
Q Consensus       210 ~G~y~C~~~n~~g~~~~~~~~l~V~~~  236 (238)
                      +|.|.|.+..... .....+.|.|...
T Consensus        86 sG~Y~C~v~~~~~-~~~~~v~L~V~~~  111 (116)
T d1xeda_          86 SGRYKCGLGINSR-GLSFDVSLEVLEH  111 (116)
T ss_dssp             CEEEEEEESCGGG-CCEEEEEEEEECC
T ss_pred             CEEEEEEEEcCCC-CceEeEEEEEECC
Confidence            9999999875433 3355677777653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.36  E-value=1.6e-06  Score=53.96  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=49.0

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCc-eeeeeee------eeEe--ecCc
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADT-KAVLAIH------EHVI--TNNA   88 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~------~~~~--~~~~   88 (238)
                      -.+++|+++.|+|.++...=.                       ....+.|+++.. +......      ...+  .-.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~-----------------------s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kg   66 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSIT-----------------------SGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKD   66 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTT-----------------------TSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTT
T ss_pred             ceECCCCCEEEEEEEeccccc-----------------------CCCcceeeeECCCcchheeeeecccccchhcccccc
Confidence            347789999999999753100                       012378888521 1111111      1111  1135


Q ss_pred             cEEEEEcC-CCeEEEEEcccCcccCeEEEEEE
Q psy7941          89 RLSVTHND-ANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        89 ~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      |+.+.... .+.+.|+|.+++.+|++.|+|..
T Consensus        67 R~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr   98 (127)
T d3cx5j1          67 RLSITRDTSKNQFFLKLNSVTTEDTATYYCAR   98 (127)
T ss_dssp             TBCCEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceeecccccceeecceeccccccceEEEeee
Confidence            77766543 36779999999999999999974

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=7.8e-07  Score=54.54  Aligned_cols=76  Identities=12%  Similarity=0.362  Sum_probs=47.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Cee-eEeecC----CCCCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKE-IIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~-~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.||+..  ..+ ......    ........   ......|.|.++..+|+|.|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence            44567889999999998765545579999732  111 111111    11111111   112237999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (106)
T d1i8ka_          88 CLQSFN   93 (106)
T ss_dssp             EEECSS
T ss_pred             EecCcc
Confidence            987643

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.34  E-value=8.5e-07  Score=54.26  Aligned_cols=79  Identities=20%  Similarity=0.416  Sum_probs=50.3

Q ss_pred             eeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE--------ee--c
Q psy7941          17 NVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV--------IT--N   86 (238)
Q Consensus        17 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~~--~   86 (238)
                      .-.+++|+++.|+|.++...   ++                     ...+.|+|+........-..+        +.  -
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s---~~---------------------~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~   64 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYI---FT---------------------SSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDF   64 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHH---HT---------------------TSEECEEEECTTSCCEEEEEECTTTCCEEECHHH
T ss_pred             CceECCCCCEEEEEEECCCC---Cc---------------------CCccccccCCCCCceeeeeccCCccccccccccc
Confidence            34578999999999987421   00                     123778885321111111111        11  1


Q ss_pred             CccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      .+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        65 kgR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          65 KDRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             HTTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             eeeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence            35888877443 6789999999999999999964

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.4e-06  Score=51.83  Aligned_cols=88  Identities=15%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             CceeecCCCcEEEEEEEcc-cc-CCeEEEEeCC--Cee--eEeecC---CCCCcceEEEe-----eceEEEEEeecCCCe
Q psy7941         146 GDMMVPEGGSAKLVCKAKG-YP-TPKITWRRED--NKE--IIVRSN---PPSSQKVFSVE-----SEVLSLTKVTRSEMG  211 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~-~p-~~~~~W~~~~--~~~--~~~~~~---~~~~~~~~~~~-----~~~l~i~~~~~~d~G  211 (238)
                      ..+...+|++++|.|.... .. ...+.|++..  +..  +.....   ...........     ...|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            3466889999999998754 22 3467898732  111  111111   11111121111     126999999999999


Q ss_pred             EEEEEeeeCCCCCccceEEEEE
Q psy7941         212 AYQCIAANGVPPTVSKRLMLHV  233 (238)
Q Consensus       212 ~y~C~~~n~~g~~~~~~~~l~V  233 (238)
                      .|.|.+.............+.+
T Consensus        84 ~Y~C~v~~~~~~~~~~~~~~~l  105 (108)
T d1hkfa_          84 HYWCRIYRPSDNSVSKSVRFYL  105 (108)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEEecCCCCcEEEeeEEEE
Confidence            9999988655433344433433

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.33  E-value=2.2e-06  Score=53.60  Aligned_cols=78  Identities=21%  Similarity=0.392  Sum_probs=51.0

Q ss_pred             eEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee----------eEe--e
Q psy7941          18 VTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE----------HVI--T   85 (238)
Q Consensus        18 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~----------~~~--~   85 (238)
                      -.+++|+++.|+|.++...-.                        ...+.|+++........-.          ..+  .
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s------------------------~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s   65 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFS------------------------DVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAAS   65 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGG------------------------GSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTT
T ss_pred             ceECCCCCeEEEEEECCCCCc------------------------CCcccccccCCCccceecccccccccccchhhccc
Confidence            457899999999999742110                        2247888863211111110          111  1


Q ss_pred             cCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          86 NNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        86 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      -.+||.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        66 ~kgR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR  100 (131)
T d3c2ah1          66 VKGRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTT  100 (131)
T ss_dssp             TTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEEecccccceeecceeccccCCceEEEEec
Confidence            246888876543 6778999999999999999975

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.32  E-value=5.1e-06  Score=51.58  Aligned_cols=77  Identities=16%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC----eeeEeecCCCC---CcceE-----EEeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN----KEIIVRSNPPS---SQKVF-----SVESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~----~~~~~~~~~~~---~~~~~-----~~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+.++|.|.....+...+.|++...    ..+........   .....     ......|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            445678899999999998776667899997321    11111111000   00000     1112379999999999999


Q ss_pred             EEEEeeeCC
Q psy7941         213 YQCIAANGV  221 (238)
Q Consensus       213 y~C~~~n~~  221 (238)
                      |.|.+....
T Consensus        87 Y~Ca~~~~~   95 (114)
T d2cdea1          87 YICVVSDRG   95 (114)
T ss_dssp             EEEEEECSC
T ss_pred             cceeeecCC
Confidence            999998753

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.5e-06  Score=51.11  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|.. .|..|++++|+|.......                          ..+.|+|++.......       
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~--------------------------~~f~L~k~g~~~~~~~-------   49 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPF--------------------------DRFSLAKEGELSLPQH-------   49 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCC--------------------------SEEEEEETTCSSCCSE-------
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCc--------------------------eEEEEEECCcccceEE-------
Confidence            35666666654 6889999999998532221                          2378999764321110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                             ........+.|.+++.+|+|.|.|....
T Consensus        50 -------~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          50 -------QSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             -------EECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             -------cCCCcccEEEEeccccccCcEEEEEEEc
Confidence                   0011223889999999999999998854

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.31  E-value=1.6e-06  Score=53.34  Aligned_cols=81  Identities=15%  Similarity=0.307  Sum_probs=51.8

Q ss_pred             CceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee------------e
Q psy7941          15 LENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE------------H   82 (238)
Q Consensus        15 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~------------~   82 (238)
                      .....+++|+++.|+|.+++..-.                        ...+.|+++........-.            +
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~------------------------~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Y   62 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFS------------------------DFWMYWVRQAPGKGLEWVGRIKNIPNNYATEY   62 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGG------------------------GEEEEEEEECTTSCEEEEEEECCTTTTTCEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCc------------------------CCceeeceecCCccceeeeeeccccccccccc
Confidence            334568899999999999853211                        1237888853211111110            0


Q ss_pred             EeecCccEEEEEcCC-CeEEEEEcccCcccCeEEEEEE
Q psy7941          83 VITNNARLSVTHNDA-NTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                      ...-.+|+.+..... +.+.|+|.+++.+|++.|+|..
T Consensus        63 a~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          63 ADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTR  100 (121)
T ss_dssp             CGGGTTTBCCEECTTTSEEEEEEESCCGGGCEECEEEE
T ss_pred             chheeeeeEEccccccceeeceecccCCCcceEEEEec
Confidence            111245777776444 6778999999999999999965

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=2.5e-06  Score=52.92  Aligned_cols=78  Identities=18%  Similarity=0.325  Sum_probs=49.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Ce-ee-EeecCCC---CCcceE-E----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NK-EI-IVRSNPP---SSQKVF-S----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~-~~-~~~~~~~---~~~~~~-~----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+.+.|.|...+.....+.|++..  +. .. .......   ...... .    .....|.|.++..+|+|.
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~   86 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSAT   86 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcE
Confidence            45577889999999999876555679999732  11 11 1111000   000110 0    112379999999999999


Q ss_pred             EEEEeeeCCC
Q psy7941         213 YQCIAANGVP  222 (238)
Q Consensus       213 y~C~~~n~~g  222 (238)
                      |.|.+....+
T Consensus        87 YyCa~~~~~~   96 (113)
T d2bnqd1          87 YLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEESSS
T ss_pred             EeEeEecCCC
Confidence            9999976543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.30  E-value=1.2e-06  Score=53.84  Aligned_cols=76  Identities=13%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e---eeEeecC---CCCCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K---EIIVRSN---PPSSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~---~~~~~~~---~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.|++... .   .+.....   .........   .....|.|.++..+|+|.|.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            455778899999999998655556899987322 1   1111110   111111111   11237999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+.+.
T Consensus        88 Ca~~~~   93 (107)
T d1tjgl1          88 CQQLHF   93 (107)
T ss_dssp             EEECSB
T ss_pred             EEECcC
Confidence            976543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.29  E-value=1.6e-06  Score=53.11  Aligned_cols=75  Identities=11%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCe---eeEeecC----CCCCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK---EIIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~---~~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.||+....   .+.....    ........   ......|.|.+++.+|+|.|.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH   86 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence            4557789999999999986655557999974211   1111111    11111111   112237999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1op3k1          87 CQHYA   91 (106)
T ss_dssp             EEEEC
T ss_pred             eeeCC
Confidence            98764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=3.5e-06  Score=52.71  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CCceeecCCCcEEEEEEEcc----ccCCeEEEEeCC--C-e--eeEeec--------CCCCCcceEE-----EeeceEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG----YPTPKITWRRED--N-K--EIIVRS--------NPPSSQKVFS-----VESEVLSL  202 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~----~p~~~~~W~~~~--~-~--~~~~~~--------~~~~~~~~~~-----~~~~~l~i  202 (238)
                      +..+.+..|+++.|.|....    .....+.|++..  + .  .+....        ......+...     ..+.+|.|
T Consensus         6 p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (119)
T d1neua_           6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (119)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEE
Confidence            44567888999999998643    123379997622  1 1  111000        0111112111     11247999


Q ss_pred             EEeecCCCeEEEEEeeeCCCC-CccceEEEEEE
Q psy7941         203 TKVTRSEMGAYQCIAANGVPP-TVSKRLMLHVH  234 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~n~~g~-~~~~~~~l~V~  234 (238)
                      .+++.+|+|.|.|.+.+..+. .....++|.|.
T Consensus        86 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            999999999999999886542 32445666664

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=2.4e-06  Score=52.27  Aligned_cols=75  Identities=15%  Similarity=0.376  Sum_probs=47.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Cee-eEeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKE-IIVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~-~~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|+.++|.|.........+.|++..  ..+ ......    .........   .....|.|.++..+|+|.|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy   86 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY   86 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence            45567889999999998866555579999842  111 111111    111111111   12237999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+.+
T Consensus        87 Ca~~~   91 (106)
T d1a0ql1          87 CLQYY   91 (106)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            98764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.6e-06  Score=51.88  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             eeecCCCcEEEEEEEcccc---CCe--EEEEeCCCeeeEeecC---------CCCCcce-EEEeeceEEEEEeecCCCeE
Q psy7941         148 MMVPEGGSAKLVCKAKGYP---TPK--ITWRREDNKEIIVRSN---------PPSSQKV-FSVESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p---~~~--~~W~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~l~i~~~~~~d~G~  212 (238)
                      +.+..|+++.|.|.....+   ...  ..|.++++..+.....         ....... ....+..|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4567899999999875322   222  4445533333221110         1111111 12234579999999999999


Q ss_pred             EEEEeeeCC
Q psy7941         213 YQCIAANGV  221 (238)
Q Consensus       213 y~C~~~n~~  221 (238)
                      |.|.+....
T Consensus        84 Y~C~V~~~~   92 (110)
T d1ncna_          84 YQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999997544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=52.83  Aligned_cols=75  Identities=9%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---eeeEeecC----CCCCcceE-E--EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---KEIIVRSN----PPSSQKVF-S--VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~~~~~~~~----~~~~~~~~-~--~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|...+.....+.||+...   ........    ........ .  .....|.|.+++.+|+|.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            455778899999999998765556789997321   11111111    11111111 1  11237999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            98764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.27  E-value=2.3e-06  Score=53.10  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=46.7

Q ss_pred             CCceeecCCCcEEEEEEEcc--ccCCeEEEEeCCC--eeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRREDN--KEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C~  216 (238)
                      +..+.+.+|++++|.|...+  .....+.|++...  .+......  .........    ...|.|.+++.+|+|.|.|.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   84 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISI--GGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCC--BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeee--cccccceeECCCCceeeeecccccCCcceEeee
Confidence            45567889999999999865  3455799997321  11111000  111111111    12799999999999999999


Q ss_pred             eeeC
Q psy7941         217 AANG  220 (238)
Q Consensus       217 ~~n~  220 (238)
                      +...
T Consensus        85 ~~~~   88 (113)
T d1vesa_          85 AFYS   88 (113)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            8654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2e-06  Score=52.78  Aligned_cols=75  Identities=16%  Similarity=0.310  Sum_probs=46.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Cee-eEeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKE-IIVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~-~~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|+.++|.|.........+.|++..  ..+ ......    .........   .....|.|.+++.+|++.|.
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy   87 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF   87 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence            44567889999999999765444579999732  111 111111    111111111   12247999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1mexl1          88 CQQYN   92 (107)
T ss_dssp             EEECS
T ss_pred             EeECC
Confidence            98654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.5e-06  Score=50.67  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|..+ |..|++++|.|...-.                           ...+.++|++..........    
T Consensus         3 pkPsLsa~P~~~-v~~G~~VTL~C~~~~~---------------------------~~~f~L~k~g~~~~~~~~~~----   50 (98)
T d1ugna2           3 IKPTLSAQPSPV-VNSGGNVTLQCDSQVA---------------------------FDGFILCKEGEDEHPQCLNS----   50 (98)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECSSC---------------------------CSEEEEEEC------CEEEC----
T ss_pred             CCCEEEeeCCCc-cCCCCcEEEEeCCCCC---------------------------CCEEEEEECCCcCCcEeeee----
Confidence            567777777554 8899999999996421                           23467777654321110000    


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                          ...........+.|.+++.+|+|.|.|....
T Consensus        51 ----~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          51 ----QPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             ----------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             ----EEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence                0001112334899999999999999998743

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2e-06  Score=52.71  Aligned_cols=76  Identities=21%  Similarity=0.417  Sum_probs=47.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC----eeeEeecC---CCCCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN----KEIIVRSN---PPSSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~----~~~~~~~~---~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.|++...    ..+.....   ........   ......|.|.++..+|+|.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            445678899999999998665556789987321    11111111   11111111   112347999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.....
T Consensus        88 Ca~~~~   93 (107)
T d1d5il1          88 CLQYDE   93 (107)
T ss_dssp             EEECSS
T ss_pred             eeeccC
Confidence            987653

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=2.5e-06  Score=52.30  Aligned_cols=76  Identities=14%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--e--eeEeecC---CCCCcce-EEE--eeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--K--EIIVRSN---PPSSQKV-FSV--ESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~--~~~~~~~---~~~~~~~-~~~--~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|+++.|.|.........+.||+...  .  .+.....   ....... ...  ....|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            455678899999999998765556799987321  1  1111110   1011111 111  1237999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+.+.
T Consensus        88 CA~~~~   93 (108)
T d1jhll_          88 CQQHNE   93 (108)
T ss_dssp             EEECSS
T ss_pred             EeeCCC
Confidence            986654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=4.3e-07  Score=55.76  Aligned_cols=78  Identities=19%  Similarity=0.408  Sum_probs=48.2

Q ss_pred             EEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee---------cCcc
Q psy7941          19 TIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT---------NNAR   89 (238)
Q Consensus        19 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---------~~~~   89 (238)
                      .+++|+++.|+|.+++..-                        ....+.|+|+..-.....-..+..         -.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~------------------------~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR   66 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSL------------------------TSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSR   66 (116)
T ss_dssp             BCCTTSEECCEEECCSSCT------------------------TSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTT
T ss_pred             eECCCCCeEEEEEEeCccc------------------------ccCccceeeECCCCceeeeeeccccccccccccccce
Confidence            4678999999999974210                        022488888521111111101110         1356


Q ss_pred             EEEEEcCC-CeEEEEEcccCcccCeEEEEEEe
Q psy7941          90 LSVTHNDA-NTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        90 ~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                      |.+..... +.+.|++.+++.+|++.|+|...
T Consensus        67 ~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          67 LSISRDTSKNQVFLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             BCCEEEGGGTEEECCEESCCCCCCEEEEEEEE
T ss_pred             EEEccccccchhhcceeccCCCCCEEEEEEee
Confidence            77665433 56789999999999999999653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.8e-06  Score=50.29  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC----CC
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP----PT  224 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g----~~  224 (238)
                      .+..|++++|.|.........+.|++++..... .       .........+.|..+..+|+|.|+|.......    +.
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-~-------~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~   86 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP-Q-------HQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSF   86 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-S-------EEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECC
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccce-E-------EcCCCcccEEEEeccccccCcEEEEEEEcCCCCCCccC
Confidence            578899999999864334457899995532111 0       00111223578889999999999998865431    35


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .+..+.|.|
T Consensus        87 ~Sd~leL~V   95 (96)
T d1ucta2          87 PSNALELVV   95 (96)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEE
Confidence            577777766

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.21  E-value=1.3e-06  Score=53.32  Aligned_cols=74  Identities=19%  Similarity=0.403  Sum_probs=46.7

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee-eEeecC----CCCCcceE---EEeeceEEEEEeecCCCeEEEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE-IIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~-~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+.+|++++|.|.........+.||+...  .+ ......    ........   ......|.|.+++.+|+|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            5678899999999998665556789997421  11 111111    11111111   11124789999999999999998


Q ss_pred             eeeC
Q psy7941         217 AANG  220 (238)
Q Consensus       217 ~~n~  220 (238)
                      +.+.
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.4e-06  Score=49.25  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|.. .|..|++++|+|....                           +...+.|+|++.......       
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~---------------------------~~~~f~L~Keg~~~~~~~-------   47 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT---------------------------ATSMFLLLKEGRSSHVQR-------   47 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS---------------------------SCSEEEEEEESSSCEEEE-------
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC---------------------------CCCEEEEEECCCccceee-------
Confidence            45666666654 4778999999999642                           133488888665422110       


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEE
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQV  119 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  119 (238)
                             ........+.|.+++.+|+|.|.|..
T Consensus        48 -------~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          48 -------GYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             -------EECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             -------cCCCceeEEEecccChhcCceEEEEe
Confidence                   11123348899999999999999974

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.21  E-value=3.7e-06  Score=51.92  Aligned_cols=73  Identities=21%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             CCceeecCCCcEEEEEEEcc--ccCCeEEEEeCC-C--eeeEeecCCCCCcceEEEe----eceEEEEEeecCCCeEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG--YPTPKITWRRED-N--KEIIVRSNPPSSQKVFSVE----SEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~-~--~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~y~C  215 (238)
                      +..+.+..|++++|.|...+  .....+.||+.. +  ......  . .........    ...|.|.+++.+|+|.|.|
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~--~-~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESIS--K-GGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECC--C-BTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeec--c-CCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            44567888999999998865  345689999732 1  111111  0 111111111    2279999999999999999


Q ss_pred             EeeeC
Q psy7941         216 IAANG  220 (238)
Q Consensus       216 ~~~n~  220 (238)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            88654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=7.1e-06  Score=51.53  Aligned_cols=75  Identities=21%  Similarity=0.341  Sum_probs=47.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Ce-----eeEeecC--------CC-C-CcceE-E-E--eeceEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NK-----EIIVRSN--------PP-S-SQKVF-S-V--ESEVLSLT  203 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~-----~~~~~~~--------~~-~-~~~~~-~-~--~~~~l~i~  203 (238)
                      +..+.+.+|++++|.|.+.+.....+.|++..  ..     .+.....        .. . ..... . .  ....|.|.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~   87 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLN   87 (122)
T ss_dssp             SSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEES
T ss_pred             CCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEc
Confidence            45567889999999999877667789998721  11     1111110        00 0 01111 1 1  11369999


Q ss_pred             EeecCCCeEEEEEeee
Q psy7941         204 KVTRSEMGAYQCIAAN  219 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n  219 (238)
                      +++.+|+|.|.|.+..
T Consensus        88 ~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          88 KFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccCCCEEEEeeEeC
Confidence            9999999999998864

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=3.2e-06  Score=51.74  Aligned_cols=73  Identities=15%  Similarity=0.336  Sum_probs=46.3

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCC--e-eeEeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDN--K-EIIVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~-~~~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+.+|++++|.|...+.....+.|++...  . .......    .........   .....|.|.+++.+|+|.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            4678899999999998765556799997421  1 1111111    111111111   1124799999999999999997


Q ss_pred             eee
Q psy7941         217 AAN  219 (238)
Q Consensus       217 ~~n  219 (238)
                      ...
T Consensus        89 ~~~   91 (106)
T d1lk3l1          89 QSW   91 (106)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=2e-05  Score=44.53  Aligned_cols=77  Identities=18%  Similarity=0.304  Sum_probs=52.1

Q ss_pred             ceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccE-EEEE
Q psy7941          16 ENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARL-SVTH   94 (238)
Q Consensus        16 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~   94 (238)
                      ....+..|+...|.|.+.--..                         .|.++|.|-++..-....   . ...+. +...
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~-------------------------RPnVtWCKlngt~cv~Le---~-~pq~~TsW~e   61 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVH-------------------------RPNVTWCKHNGTIWVPLE---V-GPQLYTSWEE   61 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSS-------------------------CCCEEEEEECSSSEEECC---C-BTTEEEEEEC
T ss_pred             ceeeEecCCceEecCcchhhcC-------------------------CCCcEEEEeCCcEEEEee---c-CCccccchhh
Confidence            4556889999999999965433                         457999997665432211   0 11222 2222


Q ss_pred             c-CCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          95 N-DANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        95 ~-~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      . +...+.|.+..+..+|.|.|.|.+.-
T Consensus        62 ~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          62 NRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             SSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             cCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            2 23677999999999999999999853

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.17  E-value=3.4e-06  Score=51.82  Aligned_cols=75  Identities=16%  Similarity=0.371  Sum_probs=46.4

Q ss_pred             CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCC-e-e-eEeecC----CCCCcce-EE--EeeceEEEEEeecCCCeEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDN-K-E-IIVRSN----PPSSQKV-FS--VESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~-~-~-~~~~~~----~~~~~~~-~~--~~~~~l~i~~~~~~d~G~y  213 (238)
                      +..+.+.+|++++|.|..... ....+.|++... . + ......    ....... ..  .....|.|.++..+|+|.|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y   87 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY   87 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence            455778999999999987543 344689997431 1 1 111111    0011111 11  1123699999999999999


Q ss_pred             EEEeee
Q psy7941         214 QCIAAN  219 (238)
Q Consensus       214 ~C~~~n  219 (238)
                      .|.+..
T Consensus        88 yCa~~~   93 (108)
T d2fx7l1          88 YCQQYG   93 (108)
T ss_dssp             EEEECS
T ss_pred             eeecCC
Confidence            998754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=2.5e-06  Score=52.32  Aligned_cols=75  Identities=12%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--eee-EeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KEI-IVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~~-~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.||+...  .+. .....       ..............|.|.++..+|+|.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            445668889999999997665555799997421  111 11110       11111111222348999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d3cx5k1          88 CQHHI   92 (107)
T ss_dssp             EEECS
T ss_pred             eeeCC
Confidence            97653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=2.7e-06  Score=52.96  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---eeeEeecCCC-----CCcceEE----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---KEIIVRSNPP-----SSQKVFS----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~~~~~~~~~~-----~~~~~~~----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|++++|.|.........+.|++...   ..........     .......    .....|.|.+++.+|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            344678899999999998765666899997421   1111111100     0111111    112369999999999999


Q ss_pred             EEEEeeeCC
Q psy7941         213 YQCIAANGV  221 (238)
Q Consensus       213 y~C~~~n~~  221 (238)
                      |.|.+....
T Consensus        88 YyCa~~~~~   96 (115)
T d1lp9e1          88 YYCALFLAS   96 (115)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEcCC
Confidence            999886543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.4e-06  Score=52.28  Aligned_cols=75  Identities=16%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             eeecCCCcEEEEEEEccc----cCCeEEEEeCCCeeeEeecC-----CCCCcceEEE--eeceEEEEEeecCCCeEEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKGY----PTPKITWRREDNKEIIVRSN-----PPSSQKVFSV--ESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~----p~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      +....|+.+.|.|.....    ....+.|.+++.........     ..........  .+.+|.|.+++.+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            457789999999976432    22367888743222211111     0001111111  134799999999999999999


Q ss_pred             eeeCCC
Q psy7941         217 AANGVP  222 (238)
Q Consensus       217 ~~n~~g  222 (238)
                      +.+..+
T Consensus        84 V~~~~~   89 (105)
T d1dr9a1          84 VLKYEK   89 (105)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            987654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=2.9e-06  Score=52.15  Aligned_cols=75  Identities=13%  Similarity=0.320  Sum_probs=47.5

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-Ce--e-eEeecC--CC-CCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NK--E-IIVRSN--PP-SSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~--~-~~~~~~--~~-~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.........+.||+.. +.  . +.....  .. ......   ......|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            45567889999999999865555579999832 11  1 111111  11 111111   111237999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        88 CA~~~   92 (109)
T d1mqkl_          88 CQHHY   92 (109)
T ss_dssp             EEECS
T ss_pred             EeeeC
Confidence            98764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.14  E-value=2.3e-05  Score=48.59  Aligned_cols=78  Identities=21%  Similarity=0.357  Sum_probs=47.8

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeC--C-CeeeEeec-C------CCCCcceEEE-e----eceEEEEEeecC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRRE--D-NKEIIVRS-N------PPSSQKVFSV-E----SEVLSLTKVTRS  208 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~--~-~~~~~~~~-~------~~~~~~~~~~-~----~~~l~i~~~~~~  208 (238)
                      +..+.+.+|++++|.|...+ .....+.|++.  + +....... .      .....+.... .    ...|.|.+++.+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE   86 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc
Confidence            44567889999999998754 44568999872  1 21111111 0      0011111111 1    126899999999


Q ss_pred             CCeEEEEEeeeCCC
Q psy7941         209 EMGAYQCIAANGVP  222 (238)
Q Consensus       209 d~G~y~C~~~n~~g  222 (238)
                      |+|.|.|.+....+
T Consensus        87 Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          87 DSATYYCAFTLPPP  100 (116)
T ss_dssp             GCEEEEEEEECTTT
T ss_pred             ccccceeeEecCCC
Confidence            99999998875443

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.14  E-value=9.3e-06  Score=48.89  Aligned_cols=72  Identities=14%  Similarity=0.349  Sum_probs=45.9

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEEEEEcCC
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLSVTHNDA   97 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   97 (238)
                      +..|++.+|.|.+.+.-+.                        ...++|++++..+.....  ......++.|....   
T Consensus        14 ~~~~~~~tL~C~v~gFyP~------------------------~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s---   66 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPP------------------------VINITWLRNSKSVADGVYETSFFVNRDYSFHKLS---   66 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSS------------------------CCEEEEEESSSBCCSSEEECCCEECTTSCEEEEE---
T ss_pred             cccCCCEEEEEEEEeEECC------------------------CCEEEEEeCCeeccCCceeeeeEECCCCCEEEEE---
Confidence            4568899999999875332                        356999998765532211  12223445565554   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .|.+.   .++.+.|+|++.+.+.
T Consensus        67 ---~l~v~---~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          67 ---YLTFI---PSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             ---EEEEC---CCTTCCEEEEEECTTS
T ss_pred             ---EeEEc---CCCCCEEEEEEEECCC
Confidence               55553   4567789999987653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=1.4e-05  Score=49.57  Aligned_cols=78  Identities=15%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCC--Cee--eEeecCCCCCc----c-eEEEe----eceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRRED--NKE--IIVRSNPPSSQ----K-VFSVE----SEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~--~~~--~~~~~~~~~~~----~-~~~~~----~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... .....+.|++..  +.+  +..........    . .....    ...|.|.++..+|+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            44567889999999998644 334568999732  221  11111111000    0 01111    23799999999999


Q ss_pred             eEEEEEeeeCCC
Q psy7941         211 GAYQCIAANGVP  222 (238)
Q Consensus       211 G~y~C~~~n~~g  222 (238)
                      |.|.|.+....+
T Consensus        87 g~YyCa~~~~~~   98 (114)
T d2ak4d1          87 AVYFCALSGFYN   98 (114)
T ss_dssp             EEEEEEEECSBT
T ss_pred             CCceEeCCCCCC
Confidence            999998776543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.11  E-value=6.9e-06  Score=50.62  Aligned_cols=76  Identities=14%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CCceeecCCCcEEEEEEEcc-cc---CCeEEEEeCCC--ee-eEeecC---CC-CCcceE-E--EeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YP---TPKITWRREDN--KE-IIVRSN---PP-SSQKVF-S--VESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p---~~~~~W~~~~~--~~-~~~~~~---~~-~~~~~~-~--~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... ..   ...+.|++...  .+ ......   .. ...... .  .....|.|.+++.+|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            44567889999999998754 22   22489998421  11 111111   00 111111 1  1234799999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      +.|.|.+.+.
T Consensus        88 A~YyCa~~~~   97 (111)
T d2gsia1          88 ATYYCSHIRE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ceEEEEECCC
Confidence            9999987644

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=6.1e-06  Score=51.30  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-C---eeeEeecCCC----CCcce-EE----EeeceEEEEEeecCCCe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-N---KEIIVRSNPP----SSQKV-FS----VESEVLSLTKVTRSEMG  211 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~---~~~~~~~~~~----~~~~~-~~----~~~~~l~i~~~~~~d~G  211 (238)
                      +..+.+.+|+.++|.|.........+.||+.. +   ..+.......    ..... ..    .....|.|.++..+|+|
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            44577889999999999866555679999732 1   1111111100    00011 11    11226999999999999


Q ss_pred             EEEEEeeeC
Q psy7941         212 AYQCIAANG  220 (238)
Q Consensus       212 ~y~C~~~n~  220 (238)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1j8hd1          87 EYFCAVSES   95 (115)
T ss_dssp             EEEEEEESS
T ss_pred             cceeeecCC
Confidence            999999754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.1e-05  Score=47.86  Aligned_cols=81  Identities=15%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEE-EEeCCceeeeeeeeeEeecCccE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVA-WIKADTKAVLAIHEHVITNNARL   90 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~   90 (238)
                      ...++.+.+.+|+++.+.|.+++.                           ...+. |...++....        .+..+
T Consensus         9 ~~~p~~V~v~eg~~~vIPC~vT~P---------------------------~~~VtL~~~~~~~~~p--------~g~~v   53 (95)
T d1fltx_           9 SEIPEIIHMTEGRELVIPCRVTSP---------------------------NITVTLKKFPLDTLIP--------DGKRI   53 (95)
T ss_dssp             CSSCEEEEECTTSCEEECCCBSCT---------------------------TSCCEEEETTTEEECC--------CSSSE
T ss_pred             CCCCCEEEEeCCCCEEEEccCCCC---------------------------CceeEEEeccCCccCC--------CCCEE
Confidence            445677889999999999999743                           22343 3334443321        11222


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCCCcceeeEE
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPMTKQMAFL  131 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l  131 (238)
                      ......    -++|.+++..+.|.|.|.+..++....+.+|
T Consensus        54 ~~Dpk~----Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~yl   90 (95)
T d1fltx_          54 IWDSRK----GFIISNATYKEIGLLTCEATVNGHLYKTNYL   90 (95)
T ss_dssp             EEETTT----EEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EECCCC----CEEEeCCCcccCeEEEEEEEECCEEEEEEEE
Confidence            222221    7889999999999999999766544444343

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.8e-06  Score=51.65  Aligned_cols=76  Identities=22%  Similarity=0.274  Sum_probs=46.8

Q ss_pred             CCceeecCCCcEEEEEEEccc-cCCeEEEEeCCC--e--ee--EeecC------CC-CCcce-EEEe--eceEEEEEeec
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-PTPKITWRREDN--K--EI--IVRSN------PP-SSQKV-FSVE--SEVLSLTKVTR  207 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~--~--~~--~~~~~------~~-~~~~~-~~~~--~~~l~i~~~~~  207 (238)
                      +....+..|++++|.|..... ....+.|++...  .  .+  .....      .. ..... ....  ...|.|.+++.
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            445668889999999998653 345799998331  1  11  11110      00 01111 1111  23699999999


Q ss_pred             CCCeEEEEEeeeC
Q psy7941         208 SEMGAYQCIAANG  220 (238)
Q Consensus       208 ~d~G~y~C~~~n~  220 (238)
                      +|+|.|.|.+...
T Consensus        87 ~Dsg~YyCa~~~~   99 (114)
T d1akjd_          87 ENEGYYFCSALSN   99 (114)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCEEEeEeEcCC
Confidence            9999999998753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.7e-05  Score=48.98  Aligned_cols=74  Identities=12%  Similarity=0.336  Sum_probs=45.0

Q ss_pred             eeecCCCcEEEEEEEcc--ccCCeEEEEeCCC--e-eeEee-cCCC-C-C----cceEEEe---e--ceEEEEEeecCCC
Q psy7941         148 MMVPEGGSAKLVCKAKG--YPTPKITWRREDN--K-EIIVR-SNPP-S-S----QKVFSVE---S--EVLSLTKVTRSEM  210 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~--~p~~~~~W~~~~~--~-~~~~~-~~~~-~-~----~~~~~~~---~--~~l~i~~~~~~d~  210 (238)
                      ..+.+|++++|.|...+  .....+.|++...  . ..... .... . .    .+.....   .  ..|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            55778999999999764  3445789997422  1 11111 1100 0 0    1111111   1  2588999999999


Q ss_pred             eEEEEEeeeCC
Q psy7941         211 GAYQCIAANGV  221 (238)
Q Consensus       211 G~y~C~~~n~~  221 (238)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999986543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=2.8e-05  Score=45.85  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      .+..+.|.|.+.+.-+.                        ...++|++++..............++.|...+      .
T Consensus        14 ~~~~~~L~C~~~gF~P~------------------------~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S------~   63 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPP------------------------ELKFRFLRNGLASGSGNCSTGPNGDGSFHAWS------L   63 (91)
T ss_dssp             STTEEEEEEEEEEEBSS------------------------CCEEEEEETTEECCCCEEEEEECSSSCEEEEE------E
T ss_pred             CCCCEEEEEEEEeEECC------------------------CCEEEEEECCEeCCccCccceecCCCCEeEEE------E
Confidence            45688999999875333                        34699999886654333333334455666554      5


Q ss_pred             EEEcccCcccCeEEEEEEecCCC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      |.+.   .++...|+|++.+.+.
T Consensus        64 l~v~---~~~~~~ytC~V~H~sL   83 (91)
T d3frua1          64 LEVK---RGDEHHYQCQVEHEGL   83 (91)
T ss_dssp             EEEE---TTCGGGEEEEEECTTS
T ss_pred             EEEC---CCCCCEEEEEEEeCCC
Confidence            6653   3456789999987654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.06  E-value=2.2e-05  Score=48.61  Aligned_cols=75  Identities=21%  Similarity=0.398  Sum_probs=46.7

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCC----Ceee--Ee-ecC-------CC-CCcceE-E----EeeceEEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRRED----NKEI--IV-RSN-------PP-SSQKVF-S----VESEVLSLT  203 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~----~~~~--~~-~~~-------~~-~~~~~~-~----~~~~~l~i~  203 (238)
                      +..+.+.+|++++|.|...+ .....+.|++..    .+.+  .. ...       .. ...... .    .....|.|.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            45567899999999999876 345579998731    1211  11 000       00 011111 1    112379999


Q ss_pred             EeecCCCeEEEEEeee
Q psy7941         204 KVTRSEMGAYQCIAAN  219 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n  219 (238)
                      +++.+|+|.|.|.+..
T Consensus        85 ~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          85 NVKPEDSDFYFCATVG  100 (115)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCCcEEEEeEcC
Confidence            9999999999998863

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=3.1e-05  Score=47.98  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCC--Cee--eEeecCCCC-----CcceEEEe----eceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRRED--NKE--IIVRSNPPS-----SQKVFSVE----SEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~--~~~--~~~~~~~~~-----~~~~~~~~----~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... .....+.||+..  ..+  +........     ........    ...|.|.+++.+|+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            44567889999999998754 444578999732  111  111111000     01111111    23699999999999


Q ss_pred             eEEEEEeeeCC
Q psy7941         211 GAYQCIAANGV  221 (238)
Q Consensus       211 G~y~C~~~n~~  221 (238)
                      |.|.|.+....
T Consensus        86 a~YyCa~~~~~   96 (115)
T d1fo0a_          86 AVYFCAMRGDY   96 (115)
T ss_dssp             EEEEEEEECCC
T ss_pred             ccccceeecCC
Confidence            99999987544

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.06  E-value=1e-05  Score=49.85  Aligned_cols=75  Identities=16%  Similarity=0.325  Sum_probs=45.3

Q ss_pred             CCceeecCCCcEEEEEEEcccc-----CCeEEEEeCCC--e-eeEeecC---CC-CCcceE---EEeeceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP-----TPKITWRREDN--K-EIIVRSN---PP-SSQKVF---SVESEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~~~--~-~~~~~~~---~~-~~~~~~---~~~~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|+.++|.|...+..     ..-+.|++...  . .......   .. ......   ......|.|.++..+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            4557788999999999875422     23589997421  1 1111110   11 111111   1122379999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      +|.|.|...+
T Consensus        88 sAvYYC~~~~   97 (112)
T d1ncwl1          88 LGVYYCWQGT   97 (112)
T ss_dssp             CEEEEEEECS
T ss_pred             CEeEEEEcCC
Confidence            9999996543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-05  Score=46.56  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee-CC-CCCcc
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN-GV-PPTVS  226 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n-~~-g~~~~  226 (238)
                      .+..|++++|.|... .+...+.|++++........        .......+.|.++...|+|.|+|.... .. -+..+
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~--------~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~S   84 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRG--------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPS   84 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEE--------ECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCC
T ss_pred             cccCCCcEEEEECCC-CCCCEEEEEECCCccceeec--------CCCceeEEEecccChhcCceEEEEeECCCCCcCCCC
Confidence            477899999999863 34558889985543222111        011233688999999999999997543 22 23557


Q ss_pred             ceEEEEEE
Q psy7941         227 KRLMLHVH  234 (238)
Q Consensus       227 ~~~~l~V~  234 (238)
                      ..+.|.|.
T Consensus        85 dpLeL~Vt   92 (93)
T d1olla2          85 EPVKLLVT   92 (93)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEee
Confidence            77777763

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=7.8e-06  Score=50.68  Aligned_cols=76  Identities=18%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             CCceeecCCCcEEEEEEEcc-ccCCeEEEEeCC--Cee--eEee-cC---CCCCcceE-EE----eeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-YPTPKITWRRED--NKE--IIVR-SN---PPSSQKVF-SV----ESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~--~~~--~~~~-~~---~~~~~~~~-~~----~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|+++.|.|...+ .....+.|++..  ..+  +... ..   .....+.. ..    ....|.|.+++.+|+
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   85 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDS   85 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCC
Confidence            45577889999999999865 334578999732  111  1111 00   11111111 11    123699999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        86 g~YyCa~~~~   95 (114)
T d3bp5a1          86 GIYLCGAISL   95 (114)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEEEEeC
Confidence            9999998754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.04  E-value=6.3e-05  Score=45.07  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=49.1

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC----CCC
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV----PPT  224 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~  224 (238)
                      .+..|++++|.|.... +...+.|++++........     ..........+.+..+...|+|.|+|......    .+.
T Consensus        16 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~-----~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~   89 (99)
T d1nkra2          16 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLP-----AGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSK   89 (99)
T ss_dssp             EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEE-----CEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECC
T ss_pred             cccCCCeEEEEECCCC-CccEEEEEECCCccccEEE-----ccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccC
Confidence            5778999999998643 4557899995533221110     00001112245777888899999999876443    245


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .+..+.|.|
T Consensus        90 ~SdpLeL~V   98 (99)
T d1nkra2          90 SSDPLLVSV   98 (99)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEE
Confidence            577777765

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.04  E-value=3.9e-05  Score=45.68  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=47.9

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...| .-.|..|++++|.|...-.                           ...+.++|++..........     
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~~---------------------------~~~f~L~keg~~~~~~~~~~-----   48 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDVM---------------------------FEHFLLHREGMFNDTLRLIG-----   48 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESSC---------------------------CSEEEEEEESSSCEEEEEEC-----
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCCC---------------------------CCEEEEEECCCcCCceeeee-----
Confidence            45555555 3457799999999997421                           23478888664322111000     


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                          ..........+.|.+++..|+|.|.|....
T Consensus        49 ----~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          49 ----EHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             ----EEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             ----eecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence                011111233899999999999999998743

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=9.1e-06  Score=50.47  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=45.9

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCC--Ce--eeEeecCCC-----CCcceEE----EeeceEEEEEeecCCCeE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NK--EIIVRSNPP-----SSQKVFS----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~--~~~~~~~~~-----~~~~~~~----~~~~~l~i~~~~~~d~G~  212 (238)
                      ..+.+.+|++++|.|.........+.|++..  ..  .+.......     .......    .....|.|.++..+|+|.
T Consensus         8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1i9ea_           8 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV   87 (115)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred             CeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence            4467889999999999866555678898721  11  111111000     0000000    112379999999999999


Q ss_pred             EEEEeee
Q psy7941         213 YQCIAAN  219 (238)
Q Consensus       213 y~C~~~n  219 (238)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (115)
T d1i9ea_          88 YFCAVSG   94 (115)
T ss_dssp             EEEEEEE
T ss_pred             ecccccC
Confidence            9998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.03  E-value=1.3e-05  Score=48.11  Aligned_cols=84  Identities=14%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEe
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVI   84 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~   84 (238)
                      ++|.+..-+.. ....++..+|.|.+.+..+.                        ...++|++++.......  .....
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~   57 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPG------------------------SIEVRWFRNGQEEKTGVVSTGLIQ   57 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSS------------------------CCEEEEEETTEECCSSEEECCCEE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECC------------------------CcEEEEEECCEEcCCCCEECeEEe
Confidence            45665543222 23456778999999874333                        34699999876553221  11222


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..++.|+...      .|.   +..++.+.|+|++.+.+.
T Consensus        58 ~~dgtf~~~s------~l~---~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          58 NGDWTFQTLV------MLE---TVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             CSSSCEEEEE------EEE---CCCCTTCEEEEEEECTTC
T ss_pred             CCCcEEEEEE------Eee---EcCCCCCEEEEEEEECCC
Confidence            3345555433      343   456778899999987654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.03  E-value=1.7e-05  Score=47.70  Aligned_cols=75  Identities=11%  Similarity=0.109  Sum_probs=46.3

Q ss_pred             cccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeec
Q psy7941           7 FEPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITN   86 (238)
Q Consensus         7 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~   86 (238)
                      .+|.+...|.. .|..|++++|+|.....                           ...+.|+|++.........     
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~~---------------------------~~~f~L~k~g~~~~~~~~~-----   51 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRSS---------------------------YDMYHLSREGEAHERRLPA-----   51 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESSC---------------------------CSEEEEEETTCSSCEEEEC-----
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCCC---------------------------ccEEEEEECCCccccEEEc-----
Confidence            45666665644 67899999999986421                           3348889976442211100     


Q ss_pred             CccEEEEEcCCCeEEEEEcccCcccCeEEEEEEe
Q psy7941          87 NARLSVTHNDANTWTLNIRSVRREDRGYYMCQVN  120 (238)
Q Consensus        87 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  120 (238)
                            .......+.+.|..+...|+|.|.|...
T Consensus        52 ------~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2          52 ------GPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             ------EEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             ------cccCCccEEEEEeccccccCEEEEEEee
Confidence                  0111122355667777889999999864

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=1.9e-05  Score=48.42  Aligned_cols=74  Identities=14%  Similarity=0.282  Sum_probs=45.4

Q ss_pred             ceeecCCCcEEEEEEEccccC---CeEEEEeCC-C-ee-eEeecC----CCCCcce---EEEeeceEEEEEeecCCCeEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPT---PKITWRRED-N-KE-IIVRSN----PPSSQKV---FSVESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~-~-~~-~~~~~~----~~~~~~~---~~~~~~~l~i~~~~~~d~G~y  213 (238)
                      .+.+.+|++++|.|...+...   ..+.|++.. + .+ ......    .....+.   .......|.|.++..+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            466889999999999865322   248898732 1 11 111111    0111111   122234799999999999999


Q ss_pred             EEEeeeC
Q psy7941         214 QCIAANG  220 (238)
Q Consensus       214 ~C~~~n~  220 (238)
                      .|.....
T Consensus        89 yCa~~~~   95 (110)
T d1oaql_          89 FCALWYS   95 (110)
T ss_dssp             EEEEEET
T ss_pred             EEEcccC
Confidence            9997753

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.01  E-value=6.3e-06  Score=50.76  Aligned_cols=75  Identities=21%  Similarity=0.332  Sum_probs=45.8

Q ss_pred             CceeecCCCcEEEEEEEcc-ccCCeEEEEeCC--Ce-eeEeecC--CC-CCcceEE----EeeceEEEEEeecCCCeEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKG-YPTPKITWRRED--NK-EIIVRSN--PP-SSQKVFS----VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~--~~-~~~~~~~--~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~  214 (238)
                      ..+.+.+|++++|.|...+ .....+.||+..  .. .+.....  .. .......    .....|.|.+++.+|+|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            3467889999999999765 334468999732  11 1111110  00 0000000    11236999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            998654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.00  E-value=5.3e-06  Score=51.14  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--C--eeeEeecCCCC----CcceEE----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--N--KEIIVRSNPPS----SQKVFS----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~--~~~~~~~~~~~----~~~~~~----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+.++|.|.........+.||+..  .  ..+........    ......    .....|.|.++..+|+|.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            44567889999999999865444579999742  1  11111111000    000011    112379999999999999


Q ss_pred             EEEEeeeC
Q psy7941         213 YQCIAANG  220 (238)
Q Consensus       213 y~C~~~n~  220 (238)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (110)
T d1u3ha1          86 YFCAASAN   93 (110)
T ss_dssp             EEECCEES
T ss_pred             EeeeecCC
Confidence            99998743

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=2.7e-05  Score=48.47  Aligned_cols=77  Identities=19%  Similarity=0.331  Sum_probs=48.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e--eeEee--c-C-----C-CCCcceEEEe----eceEEEEEeecC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K--EIIVR--S-N-----P-PSSQKVFSVE----SEVLSLTKVTRS  208 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~--~~~~~--~-~-----~-~~~~~~~~~~----~~~l~i~~~~~~  208 (238)
                      +..+.+.+|++++|.|...+.....+.|++... .  .....  . .     . ..........    ...|.|.++..+
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            344668899999999998776667899998421 1  11110  0 0     1 1111211111    236999999999


Q ss_pred             CCeEEEEEeeeCC
Q psy7941         209 EMGAYQCIAANGV  221 (238)
Q Consensus       209 d~G~y~C~~~n~~  221 (238)
                      |+|.|.|.+....
T Consensus        88 Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          88 DSGFYVCSALAGS  100 (118)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cCceEEEEEecCC
Confidence            9999999986543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=2.4e-05  Score=48.08  Aligned_cols=75  Identities=21%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee--eEeecC------CCCC-cceE---EEeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE--IIVRSN------PPSS-QKVF---SVESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~--~~~~~~------~~~~-~~~~---~~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|...+ ....+.||+...  .+  +.....      .... ....   ......|.|.++..+|+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT   86 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence            44567889999999998754 345799998321  11  111110      0000 1111   11234788999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        87 a~YyCa~~~~   96 (110)
T d2aq2a1          87 SVYFCASGGG   96 (110)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEeeCCC
Confidence            9999988753

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.1e-05  Score=46.12  Aligned_cols=67  Identities=16%  Similarity=0.524  Sum_probs=40.1

Q ss_pred             cCCCcEEEEEEEcc-ccCCeEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTPKITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..++.+.|.|.+.| +|.+.+.|.++ +..+.....   ........ ...+.|.+   ...+...|+|.+.+..-
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n-~~~~~~~~~~~~~~~~~g~y-~v~S~L~v---~~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLEN-GEELNAINTTVSQDPETELY-AVSSKLDF---NMTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEES-SCEECCSEEEEEECTTTCCE-EEEEEEEE---ETTSCEEEEEEEEETTC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecC-CcEecccceeeEecCCCccE-EEEEEEEc---cCCccceEEEEEEecCC
Confidence            34677899999987 89899999994 443322111   00011111 11123433   34556799999999765

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.99  E-value=7.2e-06  Score=50.55  Aligned_cols=76  Identities=17%  Similarity=0.309  Sum_probs=45.7

Q ss_pred             CCceeecCCCcEEEEEEEcc-c---cCCeEEEEeCCC--e--eeEeecC--C-CCCcceEE---EeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG-Y---PTPKITWRREDN--K--EIIVRSN--P-PSSQKVFS---VESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~-~---p~~~~~W~~~~~--~--~~~~~~~--~-~~~~~~~~---~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... .   ....+.|++...  .  .+.-...  . ........   .....|.|.++..+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            45567889999999998743 2   223599998421  1  1111111  0 01111111   1234799999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+.+.
T Consensus        88 a~YyCa~~~~   97 (111)
T d1j05a_          88 ATYYCQQTNE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ccEEEeecCC
Confidence            9999987654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=6.6e-05  Score=45.86  Aligned_cols=86  Identities=16%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             eeecCCCcEEEEEEEccc--cCCeEEEEeCC--Ce--eeEeecCCCC------CcceEEEee-----ceEEEEEeecCCC
Q psy7941         148 MMVPEGGSAKLVCKAKGY--PTPKITWRRED--NK--EIIVRSNPPS------SQKVFSVES-----EVLSLTKVTRSEM  210 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~--~~--~~~~~~~~~~------~~~~~~~~~-----~~l~i~~~~~~d~  210 (238)
                      ..+.+|++++|.|...+.  ....+.|++..  ..  .+........      ..+.....+     -.|.|.+++.+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            567899999999998763  45578999842  11  1221111111      011111111     2588899999999


Q ss_pred             eEEEEEeeeCCCC--CccceEEEEE
Q psy7941         211 GAYQCIAANGVPP--TVSKRLMLHV  233 (238)
Q Consensus       211 G~y~C~~~n~~g~--~~~~~~~l~V  233 (238)
                      |.|.|...+....  ..-..++|.|
T Consensus        85 a~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          85 GLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             EEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             EEEEEEEeCCCCCCEEEECCEEEEE
Confidence            9999998654431  1123455655

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9.1e-06  Score=49.52  Aligned_cols=74  Identities=14%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee---eeeeEeecCccEEEEEcCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA---IHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   97 (238)
                      ..+++++|.|.+.+..+.                        ...+.|++++......   ........++.|...+   
T Consensus        17 ~~~~~vtL~Clv~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S---   69 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPE------------------------DISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFS---   69 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSS------------------------CCEEEEEETTEECCGGGEEECCCEECSSSCEEEEE---
T ss_pred             hcCCcEEEEEEEEeeeCC------------------------CcEEEEEECCEECCCceeEeeeeEecCCCCEEEEE---
Confidence            357789999999874332                        3469999987654321   1112233455666655   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .|.|..-.-.....|+|.+.+.+.
T Consensus        70 ---~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          70 ---RLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             ---EEEECHHHHTTGGGEEEEEECTTS
T ss_pred             ---EEEECHHHcCCCCEEEEEEEECCC
Confidence               677754444455689999987543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.5e-05  Score=44.38  Aligned_cols=69  Identities=9%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEee-cCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVIT-NNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  100 (238)
                      .++.+.|.|.+.+.                         .|.+.|.|++++..+.......... .++.|.+.+      
T Consensus        15 s~~~~~L~C~~~g~-------------------------~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S------   63 (95)
T d1dr9a2          15 TSNIRRIICSTSGG-------------------------FPEPHLSWLENGEELNAINTTVSQDPETELYAVSS------   63 (95)
T ss_dssp             STTEEEEEEEEEEE-------------------------SSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEE------
T ss_pred             CCCEEEEEEEECcc-------------------------cCCCEEEEecCCcEecccceeeEecCCCccEEEEE------
Confidence            57778999999752                         3566899999876553322222222 245666655      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.   ..+...|+|.+.+.+.
T Consensus        64 ~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          64 KLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             EEEEE---TTSCEEEEEEEEETTC
T ss_pred             EEEcc---CCccceEEEEEEecCC
Confidence            66664   3456799999987654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.98  E-value=8.5e-06  Score=49.06  Aligned_cols=68  Identities=22%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee---cCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR---SNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~---~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..|...+|.|.+.| +|.. .++|.+ +|..+...   .... ...... ...+.|.   +..++.+.|+|.+.+..-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~-ng~~v~~~~~~t~~~~~~dgtf-~~~s~l~---v~~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLR-NSKSVADGVYETSFFVNRDYSF-HKLSYLT---FIPSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEE-SSSBCCSSEEECCCEECTTSCE-EEEEEEE---ECCCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEe-CCeeccCCceeeeeEECCCCCE-EEEEEeE---EcCCCCCEEEEEEEECCC
Confidence            445778899999999 5644 899999 44433211   0000 001111 1111233   344566689999998653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=1.8e-05  Score=48.75  Aligned_cols=74  Identities=15%  Similarity=0.355  Sum_probs=44.8

Q ss_pred             CCceeecCCCcEEEEEEEccc-----cCCeEEEEeCCC-e--eeEeecC----CCCCcceE---EEeeceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-----PTPKITWRREDN-K--EIIVRSN----PPSSQKVF---SVESEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~-~--~~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|++++|.|...+.     ....+.|++... .  .......    ........   ......|.|.++..+|
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D   87 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED   87 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence            445678899999999987652     134689987431 1  1111111    11111111   1122379999999999


Q ss_pred             CeEEEEEee
Q psy7941         210 MGAYQCIAA  218 (238)
Q Consensus       210 ~G~y~C~~~  218 (238)
                      ++.|.|...
T Consensus        88 sAvYyCa~~   96 (112)
T d1mjul1          88 VGVYYCLQH   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEEeC
Confidence            999999643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=1.7e-05  Score=49.01  Aligned_cols=75  Identities=15%  Similarity=0.344  Sum_probs=45.9

Q ss_pred             CCceeecCCCcEEEEEEEccc-----cCCeEEEEeCCC-e--eeEeecC----CCCCcceE---EEeeceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY-----PTPKITWRREDN-K--EIIVRSN----PPSSQKVF---SVESEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~-~--~~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|++++|.|...+.     ....+.||+... .  .......    ........   ......|.|.++..+|
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   88 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   88 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCccc
Confidence            445678899999999997542     224699997431 1  1111110    11111111   1122489999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      +|.|.|...+
T Consensus        89 savYyCa~~~   98 (113)
T d1n4xl_          89 LGIYYCFQGS   98 (113)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEECC
Confidence            9999997654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.97  E-value=3.3e-05  Score=47.38  Aligned_cols=76  Identities=18%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-C--eeeEeecCCCC----CcceEE-----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-N--KEIIVRSNPPS----SQKVFS-----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~--~~~~~~~~~~~----~~~~~~-----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+.++|.|.........+.|++.. +  ..+........    ......     .....|.|.++..+|+|.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~   86 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAV   86 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcc
Confidence            44567889999999998765444579999832 1  11111111100    011111     112379999999999999


Q ss_pred             EEEEeeeC
Q psy7941         213 YQCIAANG  220 (238)
Q Consensus       213 y~C~~~n~  220 (238)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (110)
T d1ac6a_          87 YYCALSGG   94 (110)
T ss_dssp             EEEEEEET
T ss_pred             cceeecCC
Confidence            99988654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=49.62  Aligned_cols=77  Identities=14%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             CCceeecCCCcEEEEEEEccc---cCCeEEEEeCCC---eeeEeecC----CCCCcceE---EEeeceEEEEEeecCCCe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY---PTPKITWRREDN---KEIIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~~~---~~~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G  211 (238)
                      +..+.+.+|++++|.|...+.   ....+.|++...   ........    ........   ......|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            345778899999999997653   223589997321   11111111    10111111   112347999999999999


Q ss_pred             EEEEEeeeCC
Q psy7941         212 AYQCIAANGV  221 (238)
Q Consensus       212 ~y~C~~~n~~  221 (238)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999886543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=8.2e-05  Score=41.36  Aligned_cols=64  Identities=20%  Similarity=0.388  Sum_probs=39.9

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCe
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (238)
                      ...|..+.|+|...+.....                        .--.|+|++..+..         + +.     ....
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i------------------------~ghrW~K~gkvl~e---------d-~~-----~~~~   49 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEV------------------------TGHRWLKGGVVLKE---------D-AL-----PGQK   49 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCC------------------------CEEEEESSSEEEEC---------T-TC-----CCSE
T ss_pred             ccCCCCEEEEEECCCCCCce------------------------eeeEEeeCCEEccc---------c-CC-----CCCc
Confidence            35788899999997653322                        23689997765421         1 10     1111


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ..+.|..  .+++|.|.|.+.....
T Consensus        50 tey~V~~--~D~SGeY~CVFl~~P~   72 (80)
T d3b5ha2          50 TEFKVDS--DDQWGEYSCVFLPEPM   72 (80)
T ss_dssp             EEEEECG--GGCCEEEEEEEESTTS
T ss_pred             eEEEEec--CCCCceEEEEEcCCCc
Confidence            2555643  7789999999865544

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.2e-06  Score=49.70  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecC
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNN   87 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~   87 (238)
                      +|.+...|.. .|..|++++|+|.....                           ...+.++|++........      .
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~~~---------------------------~~~f~L~keg~~~~~~~~------~   49 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGGQE---------------------------TQEYRLYREKKTAPWITR------I   49 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT---------------------------CCCEEEEESSSCCHHHHT------S
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCCCC---------------------------CCEEEEEECCCCcccEEE------c
Confidence            5666555554 47799999999996421                           234677886542110000      0


Q ss_pred             ccEEEEEcCCCeEEEEEcccCcccCeEEEEEEec
Q psy7941          88 ARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNT  121 (238)
Q Consensus        88 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  121 (238)
                      .     ........+.|.+++.+|+|.|.|....
T Consensus        50 ~-----~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          50 P-----QELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             C-----HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             c-----CCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            0     0001122889999999999999998743

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=48.87  Aligned_cols=69  Identities=13%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCe-EEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~n~~g  222 (238)
                      +..+..+.|.|.+.+ +|.. .+.|.+++.........  ........ ...+.|.+   ..++-| .|+|.+.|...
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~-~~~S~L~v---~~~~w~~~ytC~V~H~s~   94 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTY-MKFSWLTV---PEKSLDKEHRCIVRHENN   94 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSE-EEEEEEEE---CTGGGGSCEEEEEEETTS
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeE-EEEEEEEE---ecccCCCeEEEEEEECCC
Confidence            455678999999998 5655 89999954322111100  00001111 11223444   333434 79999999865

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=49.24  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Ce--eeEeecCCCC---Ccce-EE----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NK--EIIVRSNPPS---SQKV-FS----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~--~~~~~~~~~~---~~~~-~~----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|++++|.|.........+.|++..  ..  .+........   .... ..    .....|.|.++..+|+|.
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence            44567889999999999776555678998732  11  1111111000   0011 11    112379999999999999


Q ss_pred             EEEEeee
Q psy7941         213 YQCIAAN  219 (238)
Q Consensus       213 y~C~~~n  219 (238)
                      |.|.+..
T Consensus        87 YyCa~~~   93 (111)
T d1bd2d1          87 YFCAAME   93 (111)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.6e-05  Score=48.80  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CCceeecCCCcEEEEEEEccc----c---CCeEEEEeCCCee-----eEeecC-----CCCCcceEEE-----eeceEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY----P---TPKITWRREDNKE-----IIVRSN-----PPSSQKVFSV-----ESEVLSL  202 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~----p---~~~~~W~~~~~~~-----~~~~~~-----~~~~~~~~~~-----~~~~l~i  202 (238)
                      +..+.+.+|+.+.|.|.....    .   ...+.|++.....     +.....     .....+....     .+..|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            345778899999999987421    1   1257898743211     111110     0011112211     1347999


Q ss_pred             EEeecCCCeEEEEEeeeCCCC--CccceEEEEE
Q psy7941         203 TKVTRSEMGAYQCIAANGVPP--TVSKRLMLHV  233 (238)
Q Consensus       203 ~~~~~~d~G~y~C~~~n~~g~--~~~~~~~l~V  233 (238)
                      .+++.+|+|.|.|.+......  -..+.+.|.|
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  120 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV  120 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred             CCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence            999999999999999754321  1134455554

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.1e-05  Score=48.64  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=39.8

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeece---EEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..|..+.|.|.+.| +|.. .++|.+ ++..+......    ......+++   .....+..++.+.|+|.+.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~v~~~~~~----~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLK-NGERIEKVEHS----DLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTTCEEC----CCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEE-CCEecCCcccc----ceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCC
Confidence            356788899999999 5655 899999 55544211100    001111111   11223445566699999999764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.6e-05  Score=44.19  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee---eeeeEeecCccEEEEEcCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA---IHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   97 (238)
                      ..++.++|.|.+.+.-+.                        ...+.|++++......   ........+..|....   
T Consensus        13 ~~~~~~tL~C~~~gFyP~------------------------~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s---   65 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQ------------------------NITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWI---   65 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSS------------------------CCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEE---
T ss_pred             CCCCCEEEEEEEeeEECC------------------------CCEEEEEECCEECccCcccccceEeCCCceEEEEE---
Confidence            457788999999864322                        3469999987664321   1111222334444433   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .|.+   ..++.+.|+|.+.+.+.
T Consensus        66 ---~l~v---~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          66 ---TLAV---PPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             ---EEEE---CTTCGGGEEEEEECTTS
T ss_pred             ---EEEE---CCCCCCEEEEEEEeCCC
Confidence               4544   34566789999987654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.93  E-value=1.3e-05  Score=49.36  Aligned_cols=75  Identities=13%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             CceeecCCCcEEEEEEEccc--cCCeEEEEeCCC---eeeEeecC----CCCCcceE---EEeeceEEEEEeecCCCeEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY--PTPKITWRREDN---KEIIVRSN----PPSSQKVF---SVESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~---~~~~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~d~G~y  213 (238)
                      +.+.+.+|++++|.|...+.  ....+.|++...   ........    ........   ......|.|.+++.+|+|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            35778999999999987553  344699997421   11111111    11111111   11124799999999999999


Q ss_pred             EEEeeeC
Q psy7941         214 QCIAANG  220 (238)
Q Consensus       214 ~C~~~n~  220 (238)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9988654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=49.40  Aligned_cols=74  Identities=16%  Similarity=0.421  Sum_probs=46.2

Q ss_pred             ceeecCCCcEEEEEEEccccCCeEEEEeCCC--e-eeEeecC---CC-CCcceE---EEeeceEEEEEeecCCCeEEEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTPKITWRREDN--K-EIIVRSN---PP-SSQKVF---SVESEVLSLTKVTRSEMGAYQCI  216 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~-~~~~~~~---~~-~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~  216 (238)
                      .+.+.+|++++|.|.........+.|++...  . .......   .. ......   ......|.|.+++.+|+|.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            4678899999999997654455799997321  1 1111111   11 111111   11123788999999999999999


Q ss_pred             eeeC
Q psy7941         217 AANG  220 (238)
Q Consensus       217 ~~n~  220 (238)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.91  E-value=6.6e-05  Score=45.12  Aligned_cols=83  Identities=13%  Similarity=0.340  Sum_probs=49.3

Q ss_pred             cccceec-cCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeE
Q psy7941           7 FEPDFLY-PLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHV   83 (238)
Q Consensus         7 ~~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~   83 (238)
                      ++|.+.. ++..  +..|+..+|.|.+.+.-+.                        ...+.|++++..+...  .....
T Consensus         4 v~P~V~v~~~~~--~~~~~~~tL~C~v~gF~P~------------------------~i~v~W~~ng~~~~~~~~~~~~~   57 (101)
T d1fnga1           4 VAPEVTVLSRSP--VNLGEPNILICFIDKFSPP------------------------VVNVTWLRNGRPVTEGVSETVFL   57 (101)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSS------------------------CCEEEEEETTEEECSSEEECCCE
T ss_pred             cCCeEEEeCCCc--ccCCCCEEEEEEEEeEECC------------------------CCEEEEEECCeecCCCcEeCeEE
Confidence            4565543 2222  3467888999999875332                        3469999987654321  11122


Q ss_pred             eecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          84 ITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ...++.|...+      .|.+.   ..+...|+|.+.+.+.
T Consensus        58 ~~~dgty~~~S------~L~v~---~~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          58 PRDDHLFRKFH------YLTFL---PSTDDFYDCEVDHWGL   89 (101)
T ss_dssp             ECSSSCEEEEE------EEEEC---CCTTCCEEEEEECTTC
T ss_pred             ECCCCcEEEEE------EeEEc---CCCCCEEEEEEEECCC
Confidence            23345565554      56654   3455689999987654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.90  E-value=4.4e-05  Score=45.63  Aligned_cols=72  Identities=11%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee--eeeeEeecCccEEEEEcCC
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA--IHEHVITNNARLSVTHNDA   97 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   97 (238)
                      +..+++++|.|.+.+.-+.                        ...++|++++......  ........++.|...+   
T Consensus        14 ~~~~~~~tL~C~~~gFyP~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s---   66 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPA------------------------EVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLS---   66 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSS------------------------CCEEEEEETTEECCCCCSBCCCEECSSSCEEEEE---
T ss_pred             ccCCCcEEEEEEEEEEECC------------------------CCEEEEEECCEeccCCeEeCceEECCCCCEEEEE---
Confidence            4467889999999874333                        3469999987654321  1122223345565544   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .|.+   ..++...|+|.+++.+.
T Consensus        67 ---~L~v---~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          67 ---HLAL---TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             ---EEEE---CCCTTCCEEEEEECTTS
T ss_pred             ---EeEc---CCCCCCEEEEEEEeCCC
Confidence               5555   34556689999988654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.90  E-value=2.4e-05  Score=47.16  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee---cCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR---SNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~---~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...|+...|.|.+.| +|.. .++|.+ ++..+...   .... ..... ....+.|.+   ...+...|+|.+.+..-
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgt-y~~~S~L~v---~~~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLR-NGRPVTEGVSETVFLPRDDHL-FRKFHYLTF---LPSTDDFYDCEVDHWGL   89 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEE-TTEEECSSEEECCCEECSSSC-EEEEEEEEE---CCCTTCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEE-CCeecCCCcEeCeEEECCCCc-EEEEEEeEE---cCCCCCEEEEEEEECCC
Confidence            345677899999999 5655 899999 55544211   0000 00111 111223433   33445589999999753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.89  E-value=1.8e-05  Score=48.89  Aligned_cols=73  Identities=15%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             ceeecCCCcEEEEEEEccc--cCCeEEEEeCCCe---eeEeecC----CCCCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         147 DMMVPEGGSAKLVCKAKGY--PTPKITWRREDNK---EIIVRSN----PPSSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~~---~~~~~~~----~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      .+.+.+|++++|.|...+.  ....+.||+....   .......    .........   .....|.|.++..+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            4678899999999998653  3457999974321   1111111    111111111   11347999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            99864

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.88  E-value=3.1e-05  Score=46.31  Aligned_cols=68  Identities=24%  Similarity=0.379  Sum_probs=38.9

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCC-CC---CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP-PS---SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...++.+.|.|.+.| +|.. .++|.+ ++..+...... ..   .... ....+.|.   +..++...|+|.+.+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgt-y~~~s~L~---v~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRK-NGKLVMHSSAHKTAQPNGDWT-YQTLSHLA---LTPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEE-TTEECCCCCSBCCCEECSSSC-EEEEEEEE---ECCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEE-CCEeccCCeEeCceEECCCCC-EEEEEEeE---cCCCCCCEEEEEEEeCCC
Confidence            345678899999999 5644 899999 55444221110 00   0001 11111233   445555689999999764

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=3.4e-05  Score=46.62  Aligned_cols=74  Identities=11%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .++++.|.|.+.+..+.                        ...+.|++++........ ......++.|...+      
T Consensus        18 ~~~~~~L~C~v~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S------   67 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPP------------------------DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYS------   67 (102)
T ss_dssp             GSSEEEEEEEEEEEBSS------------------------CCEEEEEETTEECSSEEECCCEECTTSCEEEEE------
T ss_pred             cCCeEEEEEEEEEEECC------------------------CCEEEEEECCeeccCcEEcccEeCCCCCEEEEE------
Confidence            35788999999865332                        346999998765432221 12233455666554      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCCc
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPMT  125 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~~  125 (238)
                      .|.|..-...+...|+|++.+.+..
T Consensus        68 ~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          68 KLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEECHHHhCCCCEEEEEEEeCCCC
Confidence            6777654445566899999876543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.88  E-value=2e-05  Score=46.92  Aligned_cols=68  Identities=18%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             CCcEEEEEEEccccCCeEEEEeCCCe---e-eEeecC-CC-CCcceEE-E----eeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         153 GGSAKLVCKAKGYPTPKITWRREDNK---E-IIVRSN-PP-SSQKVFS-V----ESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       153 g~~~~l~C~~~~~p~~~~~W~~~~~~---~-~~~~~~-~~-~~~~~~~-~----~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      |+.++|.|.........+.|++....   . +..... .. ....... .    ....|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            67899999987766678999973211   1 111110 00 0011111 0    1237999999999999999998654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=2.9e-05  Score=47.93  Aligned_cols=76  Identities=16%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC--Ceee-EeecCCCC---CcceE-----EEeeceEEEEEeecCCCeEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED--NKEI-IVRSNPPS---SQKVF-----SVESEVLSLTKVTRSEMGAY  213 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~~~-~~~~~~~~---~~~~~-----~~~~~~l~i~~~~~~d~G~y  213 (238)
                      +..+.+.+|+.++|.|.... ....+.||+..  +.+. ........   .....     ......|.|.++..+|+|.|
T Consensus         8 P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   86 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY   86 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE
T ss_pred             CCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE
Confidence            44567889999999999765 23579999832  1111 11100000   00000     01123699999999999999


Q ss_pred             EEEeeeCC
Q psy7941         214 QCIAANGV  221 (238)
Q Consensus       214 ~C~~~n~~  221 (238)
                      .|.+....
T Consensus        87 yCa~~~~~   94 (113)
T d1h5ba_          87 FCAAEASS   94 (113)
T ss_dssp             EEEEECSS
T ss_pred             EEEecCCC
Confidence            99987544

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.5e-05  Score=45.81  Aligned_cols=72  Identities=14%  Similarity=0.314  Sum_probs=45.2

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCC
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDAN   98 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   98 (238)
                      +..|++.+|.|.+.+.-+.                        ...++|++++..+..... ......++.|....    
T Consensus        16 ~~~~~~~tL~C~~~gFyP~------------------------~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s----   67 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPS------------------------DIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLY----   67 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSS------------------------CCEEEEEETTEECTTCEECCCEECTTSCEEEEE----
T ss_pred             ccCCCCEEEEEEECccCCC------------------------CcEEEEEECCEecCCccccceecCCCCcEEEEE----
Confidence            4578899999999874333                        336999998766532222 12223344554433    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.+   ..+|.+.|+|++.+.+.
T Consensus        68 --~l~v---~~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          68 --YTEF---TPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             --EEEE---CCCSSCCEEEEEECTTC
T ss_pred             --EeEE---CCCCCCEEEEEEEeCCC
Confidence              4544   45667799999987654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=6.1e-05  Score=45.17  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=37.8

Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|+.+.|.|.+.| +|.. .++|.+ ++..+.....   ....... ....+.|   .+..++.+.|+|.+.+..-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~-~g~~~~~~~~~~~~~~~dgt-f~~~s~l---~v~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLK-NGKKIPKVEMSDMSFSKDWS-FYILAHT---EFTPTETDTYACRVKHDSM   87 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEE-TTEECTTCEEEEEEECTTCC-EEEEEEE---EECCCSSCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEee-CCeecCCcEECceeECCCCC-EEEEEEe---EecCcCCCEEEEEEEeCCC
Confidence            45778899999999 5654 899999 4443311100   0000001 1111123   3345566689999998753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.7e-05  Score=49.22  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             CCceeecCCCcEEEEEEEcc---cc---CCeEEEEeCCCe---eeEeecC-----CCCCcceEE-----EeeceEEEEEe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKG---YP---TPKITWRREDNK---EIIVRSN-----PPSSQKVFS-----VESEVLSLTKV  205 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~---~p---~~~~~W~~~~~~---~~~~~~~-----~~~~~~~~~-----~~~~~l~i~~~  205 (238)
                      +..+.+.+|+.+.|.|....   .+   .-.+.|++....   .......     .....+...     ..+..|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            34567889999999999742   11   124667764321   1111111     011111111     12347999999


Q ss_pred             ecCCCeEEEEEeeeCC
Q psy7941         206 TRSEMGAYQCIAANGV  221 (238)
Q Consensus       206 ~~~d~G~y~C~~~n~~  221 (238)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.6e-06  Score=50.41  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..+.|.|.+.+ +|.. .++|.+ ++..+.......  ..........+.|.|..-.......|+|.+.|...
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLE-DGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEE-TTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            4567899999988 6666 799999 454432111000  00000111223455544444445589999999753

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.7e-05  Score=46.37  Aligned_cols=74  Identities=15%  Similarity=0.257  Sum_probs=46.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      ..+.+.|.|.+.+..+.                        ...++|++++........ ......++.|...+      
T Consensus        17 ~~~~~tL~C~v~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S------   66 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPE------------------------DITVEWQWNGQPAENYKNTQPIMDTDGSYFVYS------   66 (101)
T ss_dssp             TSSEEEEEEEEEEEBSS------------------------CCEEEEEETTEECCSEEECCCEECTTSCEEEEE------
T ss_pred             CCCcEEEEEEEEEeECC------------------------CcEEEEEECCEEccCcEEeeeecCCCCcEEEEE------
Confidence            35678999999874322                        346999998765433222 22233456666655      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCCc
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPMT  125 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~~  125 (238)
                      .|.|..-.-.....|+|++.+.+..
T Consensus        67 ~L~v~~~~w~~~~~ytC~V~H~~l~   91 (101)
T d1cqka_          67 KLNVQKSNWEAGNTFTCSVLHEGLH   91 (101)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEECHHHhCCCCEEEEEEEECCCC
Confidence            6666543334456899999876543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.7e-05  Score=46.47  Aligned_cols=73  Identities=14%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .++.+.|.|.+.+..+.                        ...+.|++++........ ......++.|...+      
T Consensus        18 ~~~~~tL~Clv~gf~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S------   67 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPS------------------------DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS------   67 (102)
T ss_dssp             GSSEEEEEEEEEEEBSS------------------------CCEEEEEETTEEECCEEECCCEECTTSCEEEEE------
T ss_pred             cCCceEEEEEEEEeECC------------------------CCEEEEEECCEECCCeEEcceEECCCCCEEEEE------
Confidence            46789999999864322                        346999998765433221 22233456666655      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.|..-.......|+|++.+.+.
T Consensus        68 ~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          68 KLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEECHHHcCCCCEEEEEEEeCCC
Confidence            676654433344579999987654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.84  E-value=7.9e-05  Score=44.44  Aligned_cols=83  Identities=17%  Similarity=0.366  Sum_probs=44.8

Q ss_pred             ccceeccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEee
Q psy7941           8 EPDFLYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVIT   85 (238)
Q Consensus         8 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~   85 (238)
                      +|.+...+.. ....|+..+|.|.+.+.-+.                        ...+.|++++.......  ......
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~   56 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPG------------------------QIKVRWFRNDQEETAGVVSTPLIRN   56 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSS------------------------CCEEEEEETTEEECTTEEECCCEEC
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECC------------------------CeEEEEEECCEEcCCCcEeceeecC
Confidence            4555433222 23457788999999875332                        34699999876543211  122233


Q ss_pred             cCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          86 NNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .++.|....      .|.+   ..++...|+|.+.+.+.
T Consensus        57 ~dgty~~~s------~l~v---~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          57 GDWTFQILV------MLEM---TPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             SSSCEEEEE------EEEC---CSCTTCCEEEEEECTTC
T ss_pred             CCceEEEEE------Eecc---CCCCCCEEEEEEEeCCC
Confidence            445565544      4544   45667799999987644

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2e-05  Score=47.69  Aligned_cols=72  Identities=17%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   99 (238)
                      .++++.|.|.+.+..+.                        ...|.|++++........  ......++.|...+     
T Consensus        19 ~~~~~tl~C~v~~f~P~------------------------~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S-----   69 (102)
T d1q0xl2          19 STAKATLVCTITDFYPG------------------------VVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASS-----   69 (102)
T ss_dssp             TTTEEEEEEEEEEEBSS------------------------CCEEEEEETTEEECTTEEECCCEECTTSCEEEEE-----
T ss_pred             CCCeEEEEEEEeeeeCC------------------------CCEEEEEECCEECCCCeEecccEEcCCCCEEEEE-----
Confidence            46678999999865332                        346999998765432221  12223456676655     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                       .|.|..-.-.....|+|++.+.+
T Consensus        70 -~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          70 -YLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             -EEEEEHHHHTTCCEEEEEEEETT
T ss_pred             -EEEECHHHhCCCCEEEEEEEECC
Confidence             67765444445679999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.83  E-value=9.1e-05  Score=44.33  Aligned_cols=72  Identities=13%  Similarity=0.318  Sum_probs=45.3

Q ss_pred             EEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCC
Q psy7941          20 IAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDA   97 (238)
Q Consensus        20 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   97 (238)
                      +..|+..+|.|.+.+.-+.                        ...|+|++++..+....  .......++.|....   
T Consensus        16 ~~~~~~~tL~C~~~gFyP~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s---   68 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPP------------------------VVNITWLSNGQSVTEGVSETSFLSKSDHSFFKIS---   68 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSS------------------------CCEEEEEETTEEECTTEEECCCEECTTSCEEEEE---
T ss_pred             ccCCCcEEEEEEEEEEECC------------------------CCEEEEEECCEeccCCcEecceEECCCCCEEEEE---
Confidence            4467889999999875333                        34699999876543221  122233445565544   


Q ss_pred             CeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          98 NTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        98 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                         .|.+.   .++...|+|++.+.+.
T Consensus        69 ---~l~v~---~~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          69 ---YLTFL---PSADEIYDCKVEHWGL   89 (99)
T ss_dssp             ---EEEEC---CCTTCCEEEEEECTTS
T ss_pred             ---EEEEc---CCCCCEEEEEEEeCCC
Confidence               55554   4556689999987643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=1.7e-05  Score=49.35  Aligned_cols=75  Identities=13%  Similarity=0.290  Sum_probs=46.2

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---eeeEeecC----CCCCcce-EE--EeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---KEIIVRSN----PPSSQKV-FS--VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~~~~~~~~----~~~~~~~-~~--~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+..|++++|.|...+.-...+.||+...   ........    ....... ..  .....|.|.+++.+|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            345668889999999987654445689997321   11111111    0011111 11  11237999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.00018  Score=43.23  Aligned_cols=75  Identities=15%  Similarity=0.313  Sum_probs=46.9

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      .++.+.|.|.+.+.....                       ...+.|.+++..............++.|...+      .
T Consensus        18 ~~~~v~L~Clv~gF~P~~-----------------------~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S------~   68 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSG-----------------------TMNVTWGKSGKDITTVNFPPALASGGRYTMSN------Q   68 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCC-----------------------CEEEEESCCCSSCEEEECCCEECSSSCEEEEE------E
T ss_pred             CCCcEEEEEEEEcccCCC-----------------------cEEEEEccCCCcCceeEeeeEecCCCCEEEEE------E
Confidence            578899999998632110                       12478888765544333333444566776655      6


Q ss_pred             EEEcccCcccCeEEEEEEecCCCc
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNPMT  125 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~~~  125 (238)
                      |.|..-.-.....|+|++.+....
T Consensus        69 L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          69 LTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             EEECGGGSCTTCEEEEEEEETTSC
T ss_pred             EEEeHHHccCCCEEEEEEEECCCC
Confidence            777655544456899999875443

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.82  E-value=3.2e-05  Score=46.29  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=35.6

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee--cC-C-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR--SN-P-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++...|.|.+.| +|.. .++|.+ ++......  .. . .......    ..+....+..++...|+|.+.+..-
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtf----~~~s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFR-NGQEEKTGVVSTGLIQNGDWTF----QTLVMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEE-TTEECCSSEEECCCEECSSSCE----EEEEEEECCCCTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEE-CCEEcCCCCEECeEEeCCCcEE----EEEEEeeEcCCCCCEEEEEEEECCC
Confidence            3556689999999 5654 899999 44433211  00 0 0000111    1122234456666799999999764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00022  Score=42.12  Aligned_cols=71  Identities=17%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeE-eecCccEEEEEcCCCe
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHV-ITNNARLSVTHNDANT   99 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   99 (238)
                      ..|+.++|.|.+.+.-+.                        ...|.|++++........... ...++.|....     
T Consensus        13 ~~~~~~tL~C~~~gFyP~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s-----   63 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPG------------------------KIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWV-----   63 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSS------------------------CEEEEEEETTEECCCSEEEEEEETTTTEEEEEE-----
T ss_pred             CCCCCEEEEEEEEeEECC------------------------CCEEEEEECCEECCCcEEeeeecCCCCeEEEEE-----
Confidence            358899999999864332                        236999998765433222222 22334444433     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+   ...+...|+|.+.+.+.
T Consensus        64 -~l~~---~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          64 -VVAV---PPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             -EEEE---CTTCCSCEEEEEEETTC
T ss_pred             -EeEe---CCCCCCEEEEEEEECCC
Confidence             4444   45566789999987654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.80  E-value=9.3e-05  Score=45.46  Aligned_cols=75  Identities=21%  Similarity=0.307  Sum_probs=45.5

Q ss_pred             CceeecCCCcEEEEEEEcccc-CCeEEEEeCC-C--eeeEeecCC-C---CCcceEE---EeeceEEEEEeecCCCeEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYP-TPKITWRRED-N--KEIIVRSNP-P---SSQKVFS---VESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~-~--~~~~~~~~~-~---~~~~~~~---~~~~~l~i~~~~~~d~G~y~  214 (238)
                      ..+.+.+|++++|.|...+.. ...+.|++.. +  ......... .   .......   .....|.|..+..+|+|.|.
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   85 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYY   85 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEe
Confidence            446788999999999986643 3469999832 1  111111110 0   0001110   11236999999999999999


Q ss_pred             EEeeeC
Q psy7941         215 CIAANG  220 (238)
Q Consensus       215 C~~~n~  220 (238)
                      |.+...
T Consensus        86 Ca~~~~   91 (112)
T d1kgcd1          86 CILPLA   91 (112)
T ss_dssp             EECCCC
T ss_pred             eeEecC
Confidence            987543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.2e-05  Score=47.79  Aligned_cols=68  Identities=18%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeec---eEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESE---VLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .++|.+ ++..+...... . .......++   ......+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~-dg~~~~~~~~~-~-~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl   86 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLK-DKQPMDAKEFE-P-KDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL   86 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEE-TTEECCGGGSC-C-CEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTS
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEE-CCEECccCccc-c-cceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            3556899999999 6766 999999 55544322111 0 001111111   112223445555689999999753

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=6.4e-05  Score=45.07  Aligned_cols=71  Identities=14%  Similarity=0.319  Sum_probs=44.8

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCe
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANT   99 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   99 (238)
                      ..|+.++|.|.+.+.-+.                        ...++|++++........ ......++.|....     
T Consensus        16 ~~~~~~tL~C~v~gf~P~------------------------~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s-----   66 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPP------------------------HIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILA-----   66 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSS------------------------CCEEEEEETTEECTTCEEEEEEECTTCCEEEEE-----
T ss_pred             cCCCcEEEEEEEEEEECC------------------------CcEEEEeeCCeecCCcEECceeECCCCCEEEEE-----
Confidence            468889999999864332                        346999998765433222 22233445555443     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+   ..++.+.|+|++.+.+.
T Consensus        67 -~l~v---~~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          67 -HTEF---TPTETDTYACRVKHDSM   87 (99)
T ss_dssp             -EEEE---CCCSSCCEEEEEECTTS
T ss_pred             -EeEe---cCcCCCEEEEEEEeCCC
Confidence             5554   35567789999987653

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.7e-05  Score=47.36  Aligned_cols=70  Identities=13%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeec----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRS----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.++|.|.+.+ +|.. .+.|.+ ++..+....    .......-.....+.|.+..-.......|+|.+.|...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLH-NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEE-TTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEE-CCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            4567899999988 5643 899999 444432111    00000100112223465554444454589999999765

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.79  E-value=3.1e-05  Score=46.82  Aligned_cols=73  Identities=16%  Similarity=0.346  Sum_probs=45.7

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .++++.|.|.+.+..+.                        ...++|++++........ ......++.|+..+      
T Consensus        18 ~~~~~tl~C~v~gf~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S------   67 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPE------------------------DIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYS------   67 (102)
T ss_dssp             TSSEEEEEEEEEEEBSS------------------------CCEEEEEETTEECSSEEECCCEECTTSCEEEEE------
T ss_pred             cCCcEEEEEEEEEeECC------------------------CcEEEEEECCEEccCcEEccceeCCCCcEEEEE------
Confidence            47789999999874332                        346999998755332221 22233456666655      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.|..-.-.....|+|.+.+.+.
T Consensus        68 ~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          68 KLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             EEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEECHHHcCCCCEEEEEEEeCCC
Confidence            676654433345689999987654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.78  E-value=6.9e-05  Score=45.97  Aligned_cols=75  Identities=12%  Similarity=0.344  Sum_probs=46.2

Q ss_pred             CceeecCCCcEEEEEEEccc--cCCeEEEEeCCC-e-ee-EeecC----CCCCcceE-EEe----eceEEEEEeecCCCe
Q psy7941         146 GDMMVPEGGSAKLVCKAKGY--PTPKITWRREDN-K-EI-IVRSN----PPSSQKVF-SVE----SEVLSLTKVTRSEMG  211 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~~~-~-~~-~~~~~----~~~~~~~~-~~~----~~~l~i~~~~~~d~G  211 (238)
                      ..+.+.+|++++|.|...+.  ...-+.|++... . +. .....    ........ ...    ...|.|.++..+|+|
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   87 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   87 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCc
Confidence            34778999999999998653  233589998421 1 11 11111    11111111 111    237999999999999


Q ss_pred             EEEEEeeeC
Q psy7941         212 AYQCIAANG  220 (238)
Q Consensus       212 ~y~C~~~n~  220 (238)
                      .|.|...+.
T Consensus        88 ~YyCA~~~~   96 (111)
T d1cd0a_          88 DYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEeeccC
Confidence            999987654

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.8e-05  Score=47.91  Aligned_cols=72  Identities=18%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCCe
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   99 (238)
                      .++++.|.|.+.+....                        ...+.|++++.......  .......++.|...+     
T Consensus        19 ~~~~~tL~C~v~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S-----   69 (102)
T d1rzfl2          19 QANKATLVCLISDFYPG------------------------AVTVAWKADSSPVKAGVETTTPSKQSNNKYAASS-----   69 (102)
T ss_dssp             HTTCEEEEEEEEEEBSS------------------------CCEEEEEETTEECCSSEEECCCEECTTSCEEEEE-----
T ss_pred             cCCcEEEEEEEEeeCCC------------------------CeEEEEEECCEECCCCEEeCCcEECCCCEEEEEE-----
Confidence            47889999999864332                        34699999876543322  122233456666655     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                       .|.|..-.-.....|+|.+.+.+
T Consensus        70 -~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          70 -YLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             -EEEECHHHHHHSSCEEEEEEETT
T ss_pred             -EEEECHHHhCCCCEEEEEEEECC
Confidence             67665443334568999998754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=6e-05  Score=46.75  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             ceeecCCCcEEEEEEEcccc-CC--eEEEEeCCC-e--eeEeec--C------CCCCcceE--EEeeceEEEEEeecCCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP-TP--KITWRREDN-K--EIIVRS--N------PPSSQKVF--SVESEVLSLTKVTRSEM  210 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p-~~--~~~W~~~~~-~--~~~~~~--~------~~~~~~~~--~~~~~~l~i~~~~~~d~  210 (238)
                      .+.+..|+.++|.|...... ..  .+.|++... .  .+....  .      ........  ......|.|.++..+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            35577899999999974422 22  478998432 1  111111  0      00000001  11224799999999999


Q ss_pred             eEEEEEeee
Q psy7941         211 GAYQCIAAN  219 (238)
Q Consensus       211 G~y~C~~~n  219 (238)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999999864

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.76  E-value=0.00017  Score=42.83  Aligned_cols=81  Identities=17%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC----CCC
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV----PPT  224 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~----g~~  224 (238)
                      .+..|.+++|.|.... ....+.+++++..........   ..........+.|..+...|.|.|+|......    .+.
T Consensus        12 ~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~---~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~   87 (96)
T d1nkra1          12 LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIG---EHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSA   87 (96)
T ss_dssp             EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEEC---EEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCC
T ss_pred             ccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeee---eecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcccC
Confidence            4778999999998642 345788888554321111000   00001122358899999999999999886442    245


Q ss_pred             ccceEEEEE
Q psy7941         225 VSKRLMLHV  233 (238)
Q Consensus       225 ~~~~~~l~V  233 (238)
                      .+..+.|.|
T Consensus        88 pSdpLeL~V   96 (96)
T d1nkra1          88 PSDPLDIVI   96 (96)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEC
Confidence            577777765

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.5e-05  Score=47.71  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=44.2

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee---eeeEeecCccEEEEEcCCC
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI---HEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   98 (238)
                      .++.+.|.|.+.+..+.                        ...|.|++++.......   .......++.|...+    
T Consensus        19 ~~~~~tL~Cl~~~f~P~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S----   70 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPK------------------------DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS----   70 (107)
T ss_dssp             TTTEEEEEEEEEEEBSS------------------------CCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEE----
T ss_pred             cCCceEEEEEEEEeECC------------------------CCEEEEEECCEEccCCeEeccccEecCCCCEEEEE----
Confidence            46788999999864332                        34699999876543211   111123345666655    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.|..-.-.....|+|.+.+.+.
T Consensus        71 --~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          71 --TLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             --EEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             --EEEECHHHhCCCCEEEEEEEECCC
Confidence              666644333336689999987543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.76  E-value=1.9e-05  Score=48.34  Aligned_cols=74  Identities=16%  Similarity=0.377  Sum_probs=46.1

Q ss_pred             CceeecCCCcEEEEEEEccccCCeEEEEeCC-Ce--eeEeecC----CCCCcceE-E--EeeceEEEEEeecCCCeEEEE
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTPKITWRRED-NK--EIIVRSN----PPSSQKVF-S--VESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~~--~~~~~~~----~~~~~~~~-~--~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      ..+.+.+|++++|.|.........+.|++.. +.  .......    ......+. .  .....|.|.+++.+|+|.|.|
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEE
Confidence            3466788999999998755444578999732 21  1111111    01111111 1  122379999999999999999


Q ss_pred             Eeee
Q psy7941         216 IAAN  219 (238)
Q Consensus       216 ~~~n  219 (238)
                      .+..
T Consensus        87 A~~~   90 (108)
T d1nfde1          87 LSSY   90 (108)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            8764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.74  E-value=4.6e-05  Score=47.10  Aligned_cols=75  Identities=17%  Similarity=0.388  Sum_probs=45.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--e-eeEeecCCCC-----CcceEE----EeeceEEEEEeecCCCeE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--K-EIIVRSNPPS-----SQKVFS----VESEVLSLTKVTRSEMGA  212 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~-~~~~~~~~~~-----~~~~~~----~~~~~l~i~~~~~~d~G~  212 (238)
                      +..+.+.+|+++.|.|...+. ...+.||+...  . .+........     ......    .....|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            445678899999999997653 34799997321  1 1111111000     000000    112379999999999999


Q ss_pred             EEEEeeeC
Q psy7941         213 YQCIAANG  220 (238)
Q Consensus       213 y~C~~~n~  220 (238)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (115)
T d1ogad1          86 YLCAGAGS   93 (115)
T ss_dssp             EEEEEECT
T ss_pred             EcccccCC
Confidence            99988644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.73  E-value=5.1e-05  Score=46.73  Aligned_cols=75  Identities=15%  Similarity=0.329  Sum_probs=45.1

Q ss_pred             CCceeecCCCcEEEEEEEccc------cCCeEEEEeCCC---eeeEeecC----CCCCcc-eEEE--eeceEEEEEeecC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGY------PTPKITWRREDN---KEIIVRSN----PPSSQK-VFSV--ESEVLSLTKVTRS  208 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~------p~~~~~W~~~~~---~~~~~~~~----~~~~~~-~~~~--~~~~l~i~~~~~~  208 (238)
                      +..+.+.+|++++|.|...+.      ....+.||+...   ..+.....    ...... ....  ....|.|.+++.+
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~   87 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC
Confidence            455678899999999987541      122599998421   11111111    001111 1111  1237999999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |+|.|.|.+..
T Consensus        88 Dsa~YyCA~~~   98 (113)
T d1q9ra1          88 DLAVYYCKQSY   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeEEEecccC
Confidence            99999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.73  E-value=0.00023  Score=44.18  Aligned_cols=75  Identities=24%  Similarity=0.408  Sum_probs=46.8

Q ss_pred             CCceeecCCCcEEEEEEEcccc--CCeEEEEeCC---CeeeEeecC----CCCCcceE-EE----eeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYP--TPKITWRRED---NKEIIVRSN----PPSSQKVF-SV----ESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~---~~~~~~~~~----~~~~~~~~-~~----~~~~l~i~~~~~~d~  210 (238)
                      +..+.+..|++++|.|...+..  ...+.|++..   +........    .....+.. ..    ....|.|.+++.+|+
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Ds   87 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE   87 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCC
Confidence            3456788999999999987643  3479999731   111111111    11111211 11    123799999999999


Q ss_pred             eEEEEEeee
Q psy7941         211 GAYQCIAAN  219 (238)
Q Consensus       211 G~y~C~~~n  219 (238)
                      |.|.|....
T Consensus        88 a~YyCA~~~   96 (120)
T d1hxma1          88 GSYYCACDT   96 (120)
T ss_dssp             EEEEEEEEC
T ss_pred             ceeecCccc
Confidence            999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=3.5e-05  Score=46.76  Aligned_cols=74  Identities=14%  Similarity=0.271  Sum_probs=45.0

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---eeeEeecC---CC-CCcceE---EEeeceEEEEEeecCCCeEEE
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---KEIIVRSN---PP-SSQKVF---SVESEVLSLTKVTRSEMGAYQ  214 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~~~~~~~~---~~-~~~~~~---~~~~~~l~i~~~~~~d~G~y~  214 (238)
                      +..+.+.+|++++|.|.... ....+.||+...   ........   .. ......   ......|.|.++..+|+|.|.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYY   85 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEE
Confidence            45567889999999998643 234578997421   11111111   00 111111   112247999999999999999


Q ss_pred             EEeee
Q psy7941         215 CIAAN  219 (238)
Q Consensus       215 C~~~n  219 (238)
                      |....
T Consensus        86 Ca~~~   90 (104)
T d1yqvl1          86 CQQWG   90 (104)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            97653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.8e-05  Score=44.96  Aligned_cols=69  Identities=22%  Similarity=0.412  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeec---CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRS---NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ++.+.|.|.+.| +|.. .|+|.+ ++..+....   .......-.....+.|.+..-.......|+|.+.+...
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~-~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKV-DGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEE-CCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            457899999988 5654 899999 554432111   01000111112223466655445556699999998653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.8e-05  Score=47.83  Aligned_cols=68  Identities=18%  Similarity=0.303  Sum_probs=38.3

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .|.|.+++ .......... ..... ....+.|.|..-.. ..|.|+|.+.|...
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~-~~~~~~~~~~~~~~g~-~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGA-LSSGVLTVSAVLQSGL-YTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGT-CCTTEEECCCEEETTE-EEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCC-CcccceeeeeecCCCC-EEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            4678999999998 6654 89997743 2221111111 01111 11223455543333 35789999999765

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.69  E-value=4.7e-05  Score=45.64  Aligned_cols=68  Identities=21%  Similarity=0.375  Sum_probs=38.4

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee---cCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR---SNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...+....|.|.+.| +|.. .++|.+ ++..+...   ... ....... ...+.|.   +..++...|+|.+.+..-
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgtf-~~~s~l~---v~~~~~~~ytC~V~H~sl   89 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLS-NGQSVTEGVSETSFLSKSDHSF-FKISYLT---FLPSADEIYDCKVEHWGL   89 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEE-TTEEECTTEEECCCEECTTSCE-EEEEEEE---ECCCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEE-CCEeccCCcEecceEECCCCCE-EEEEEEE---EcCCCCCEEEEEEEeCCC
Confidence            345677899999999 5654 899999 55544211   100 0001111 1122233   334455689999998753

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.68  E-value=4.8e-05  Score=46.97  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=46.1

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---eeeEeecCC-------CCCcceEE----EeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---KEIIVRSNP-------PSSQKVFS----VESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~~~~~~~~~-------~~~~~~~~----~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... ....+.||+...   ..+......       ........    .....|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             CCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            44567889999999999753 345799997432   111111110       00111110    1123799999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        85 a~YyCa~~~~   94 (114)
T d1ogae1          85 AFYLCASSSR   94 (114)
T ss_dssp             EEEEEEEESS
T ss_pred             eeEEEeeccC
Confidence            9999987643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.68  E-value=4e-05  Score=45.80  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--CC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--PP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++...|.|.+.| +|.. .+.|.+ ++..+.....  ..  ..... ....+.|   .+..++...|+|.+.+..-
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~dgt-y~~~s~l---~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFR-NDQEETAGVVSTPLIRNGDWT-FQILVML---EMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEECCCEECSSSC-EEEEEEE---ECCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEE-CCEEcCCCcEeceeecCCCce-EEEEEEe---ccCCCCCCEEEEEEEeCCC
Confidence            4566789999999 5543 899999 4443321100  00  00111 1111123   3445566699999999764

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.00012  Score=44.16  Aligned_cols=69  Identities=22%  Similarity=0.394  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEEcc-ccCC--eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP--KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|..  .++|.+ ++..........  ..... ....+.|.|..-.......|+|.+.|...
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~-~~~~~~~~~~~~~~~~~gt-ys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGK-SGKDITTVNFPPALASGGR-YTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESC-CCSSCEEEECCCEECSSSC-EEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEcc-CCCcCceeEeeeEecCCCC-EEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            3577999999999 5654  578877 444333222110  01111 12223455555444444589999999765

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.67  E-value=0.00014  Score=43.42  Aligned_cols=70  Identities=17%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeece---EEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEV---LSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ...+.|.|.+.| +|.. .+.|.+++....................++.   .....+...+...|+|.+.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            346899999999 6655 8999995432211111100000000111111   11123344555689999998654

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=0.00011  Score=43.12  Aligned_cols=65  Identities=25%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCC--CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP--PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.| +|.. .++|.+ ++..+......  ...... ....+.|.   +..++...|+|.+.+..-
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~-ng~~~~~~~~~~~~~~dgt-y~~~S~l~---v~~~~~~~ytC~V~H~sL   83 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLR-NGLASGSGNCSTGPNGDGS-FHAWSLLE---VKRGDEHHYQCQVEHEGL   83 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECCCCEEEEEECSSSC-EEEEEEEE---EETTCGGGEEEEEECTTS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEE-CCEeCCccCccceecCCCC-EeEEEEEE---ECCCCCCEEEEEEEeCCC
Confidence            457899999999 6765 899999 55443221100  000011 11111233   344555689999998754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=4.5e-05  Score=44.75  Aligned_cols=66  Identities=20%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---C-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---P-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+..+.|.|.+.| +|.. .++|.+ ++..+.....   . ...... ....+.|.+   ...+...|+|.+.+..-
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~~gt-~~~~s~l~v---~~~~~~~ytC~V~H~~L   85 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQL-NGEELIQDMELVETRPAGDGT-FQKWASVVV---PLGKEQYYTCHVYHQGL   85 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEE-TTEEECTTCEECCCEECSSSC-EEEEEEEEE---ESSTTTTCEEEEECSSC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEEeCCCEEECcEecCCCCc-EEEEEEEEe---cCcCCCEEEEEEEECCC
Confidence            3567999999999 5644 899999 5544321110   0 000111 111123433   34444579999998753

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=5e-05  Score=45.17  Aligned_cols=66  Identities=23%  Similarity=0.365  Sum_probs=36.0

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.| +|.. .++|.+ ++..+.....   ..............|   .+...+...|+|.+.+..-
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~l---~v~~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQR-DGEDQTQDTELVETRPAGDRTFQKWAAV---VVPSGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEECGGGCEECCCEECSSSCEEEEEEE---EEETTCGGGEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEE-CCEEcCCCceeccEEcCCCCeEEEEEEE---EEEcCCCCEEEEEEEECcC
Confidence            457899999999 5644 899999 4443321110   000000001111123   3344555589999998653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.1e-05  Score=46.78  Aligned_cols=72  Identities=15%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             ecCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC-------CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeC
Q psy7941         150 VPEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN-------PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANG  220 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~  220 (238)
                      +..++.+.|.|.+.+ +|.. .|.|++ ++..+.....       ......-.....+.|.|..-.......|+|.+.+.
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~-~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQ-GSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEE-TTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEE-CCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            345778999999988 5655 899998 5544322110       00001111112224555444433445999999997


Q ss_pred             CC
Q psy7941         221 VP  222 (238)
Q Consensus       221 ~g  222 (238)
                      .-
T Consensus        96 sl   97 (108)
T d1ow0a2          96 AL   97 (108)
T ss_dssp             TC
T ss_pred             CC
Confidence            63

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.64  E-value=6.4e-05  Score=46.30  Aligned_cols=75  Identities=9%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeC--CCee-eEee-cC------CCCCcceEEEe----eceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRE--DNKE-IIVR-SN------PPSSQKVFSVE----SEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--~~~~-~~~~-~~------~~~~~~~~~~~----~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|...+ ....+.||+.  +..+ .... ..      ...........    ...|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            34466889999999998644 2357899983  2211 1110 00      11111111111    23699999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999988643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.64  E-value=0.00014  Score=43.25  Aligned_cols=70  Identities=13%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .++.++|.|.+.+.-+.                        ...+.|++++........ ......++.|...+      
T Consensus        15 ~~~~vtL~C~a~gF~P~------------------------~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S------   64 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPK------------------------PVWVMWMRGEQEQQGTQLGDILPNANWTWYLRA------   64 (96)
T ss_dssp             STTEEEEEEEEEEEBSS------------------------CEEEEEEETTEECTTCEECCCEECTTSCEEEEE------
T ss_pred             CCCeEEEEEEEEEEECC------------------------CcEEEEEECcccCCCceeCccEeCCCCcEEEEE------
Confidence            45688999999864333                        236999997654432221 12233455565544      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.+.   .+|...|+|.+.+.+.
T Consensus        65 ~L~v~---~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          65 TLDVA---DGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             EEEEE---GGGCTTEEEEEEEGGG
T ss_pred             EEEEe---CccCCEEEEEEEeCCC
Confidence            56654   4566789999987543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=3.9e-05  Score=45.72  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC-C-CCcc
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV-P-PTVS  226 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~-g-~~~~  226 (238)
                      .+..|++++|.|... .+...+.+++++.........    .. .......+.|.++...|+|.|+|...... . +..+
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~----~~-~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~S   87 (96)
T d1ugna1          14 VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI----PQ-ELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESS   87 (96)
T ss_dssp             EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS----CH-HHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCC
T ss_pred             ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc----cC-CCCCEEEEEEEecCHHHCCeEEEEEeCCCCCccccC
Confidence            467899999999853 344578888854321100000    00 01123468899999999999999987542 2 3556


Q ss_pred             ceEEEEEE
Q psy7941         227 KRLMLHVH  234 (238)
Q Consensus       227 ~~~~l~V~  234 (238)
                      ..+.|.|-
T Consensus        88 d~leL~Vt   95 (96)
T d1ugna1          88 DPLELVVT   95 (96)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEEe
Confidence            77777663

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.4e-05  Score=45.31  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC-CCC-CcceEEEeeceEEEEEeecC--CCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN-PPS-SQKVFSVESEVLSLTKVTRS--EMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~i~~~~~~--d~G~y~C~~~n~~g  222 (238)
                      ....+.|.|.+.| +|.. .|+|.+++......... ... .... ....+.|.+..-+..  ....|+|.+.+..+
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gt-ys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGK-YAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTE-EEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCC-EEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            4567899999999 6654 89999855432211110 000 0111 111223444332221  22379999999776

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.63  E-value=0.00037  Score=42.62  Aligned_cols=75  Identities=21%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e-e-eEeecCCCC--------CcceE--EEeeceEEEEEeecCCCe
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K-E-IIVRSNPPS--------SQKVF--SVESEVLSLTKVTRSEMG  211 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~-~-~~~~~~~~~--------~~~~~--~~~~~~l~i~~~~~~d~G  211 (238)
                      +..+.+.+|+.++|.|.....-...+.||+... . + .........        .....  ...+..|.|.....+|++
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa   87 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCc
Confidence            445667889999999998665556899998431 1 1 111111000        01111  122347899999999999


Q ss_pred             EEEEEeee
Q psy7941         212 AYQCIAAN  219 (238)
Q Consensus       212 ~y~C~~~n  219 (238)
                      .|.|.+..
T Consensus        88 ~Y~Ca~~~   95 (112)
T d1fo0b_          88 TLYCTCSA   95 (112)
T ss_dssp             EEEEEEES
T ss_pred             cEEEEEec
Confidence            99999754

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.62  E-value=0.00022  Score=43.31  Aligned_cols=84  Identities=11%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             ccccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEe
Q psy7941           7 FEPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVI   84 (238)
Q Consensus         7 ~~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~   84 (238)
                      .+|... ..|.......+.++.|.|.+.+..+.                        ...+.|++++....... .....
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~   62 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD------------------------VIKIHWEEKKSNTILGSQEGNTM   62 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC------------------------CEEEEEEESSSCCCCCCEECCCE
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCC------------------------ceEEEEEECCeEccCCEEcccee
Confidence            455544 34444456678899999999875433                        23599999876543221 11222


Q ss_pred             ecCccEEEEEcCCCeEEEEEcccCccc-CeEEEEEEecCC
Q psy7941          85 TNNARLSVTHNDANTWTLNIRSVRRED-RGYYMCQVNTNP  123 (238)
Q Consensus        85 ~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~  123 (238)
                      ..++.+...+      .|.+.   .+| ...|+|.+.+..
T Consensus        63 ~~~gt~~~~S------~L~v~---~~~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          63 KTNDTYMKFS------WLTVP---EKSLDKEHRCIVRHEN   93 (107)
T ss_dssp             ECSSSEEEEE------EEEEC---TGGGGSCEEEEEEETT
T ss_pred             cCCCeEEEEE------EEEEe---cccCCCeEEEEEEECC
Confidence            3445555543      56654   333 237999998753

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=4e-05  Score=46.83  Aligned_cols=87  Identities=14%  Similarity=0.302  Sum_probs=50.2

Q ss_pred             cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------   80 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------   80 (238)
                      +|.+. ..+....+..++.+.|.|.+.+..+.                        ...|.|++++........      
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~------------------------~i~v~W~~~g~~~~~~~~~t~~~~   59 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPK------------------------DVLVRWLQGSQELPREKYLTWASR   59 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSS------------------------CCEEEEEETTEECCGGGSEECCCE
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECC------------------------CEEEEEEECCeEcCCCceEcccce
Confidence            44443 33333344568899999999864322                        346999997765432110      


Q ss_pred             eeEeecCccEEEEEcCCCeEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          81 EHVITNNARLSVTHNDANTWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      ......++.|+..+      .|.|..-.-.....|+|.+.+...
T Consensus        60 ~~~~~~~gtys~~S------~L~v~~~~w~~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          60 QEPSQGTTTFAVTS------ILRVAAEDWKKGDTFSCMVGHEAL   97 (108)
T ss_dssp             ECSCSSSCCEEEEE------EEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             ecccCCCCcEEEEE------EEEEcHHHhCCCCEEEEEEEeCCC
Confidence            00112345666555      666654433446699999987543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.60  E-value=0.00023  Score=42.81  Aligned_cols=67  Identities=16%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEE---EEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSL---TKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..|...+|.|.+.| +|.. .+.|.+ ++..+....    ........++...+   ..+..++...|+|.+.+..-
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~-ng~~~~~~~----~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHD-HSVPVEGFG----PTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEE-TTEECSSCC----CEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEE-CCeecCCcE----eceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCCC
Confidence            45777899999999 6654 899999 554332111    01111111221111   12344555589999999753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=5.9e-05  Score=45.52  Aligned_cols=69  Identities=16%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeec-C-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRS-N-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ++.+.|.|.+.| +|.. .++|.+ ++....... . ......-.....+.|.+..-.......|+|.+.|...
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWES-NGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEE-CCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            567899999998 5654 899999 444332211 1 0000111112223455554444444489999999753

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.58  E-value=6e-05  Score=44.87  Aligned_cols=67  Identities=21%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .++|.+ ++..........  ....-.....+.|.+   ..++...|+|.+.|..-
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~-~~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~sL   85 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMR-GEQEQQGTQLGDILPNANWTWYLRATLDV---ADGEAAGLSCRVKHSSL   85 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEE-TTEECTTCEECCCEECTTSCEEEEEEEEE---EGGGCTTEEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEE-CcccCCCceeCccEeCCCCcEEEEEEEEE---eCccCCEEEEEEEeCCC
Confidence            3457899999999 6766 899999 444331111000  000000111123333   44555689999999763

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.58  E-value=8.1e-05  Score=45.83  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=44.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCC-C-e-eeEeecC-------CCCCcceEEE----eeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRRED-N-K-EIIVRSN-------PPSSQKVFSV----ESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~-~-~-~~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|+++.|.|.... ....+.||+.. + . .+.....       ..........    ....|.|.++..+|+
T Consensus         7 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   85 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQT   85 (113)
T ss_dssp             CSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCc
Confidence            44466789999999998632 24578999732 1 1 1111100       0001111111    123799999999999


Q ss_pred             eEEEEEeee
Q psy7941         211 GAYQCIAAN  219 (238)
Q Consensus       211 G~y~C~~~n  219 (238)
                      |.|.|.+..
T Consensus        86 a~YyCa~~~   94 (113)
T d1j8he1          86 SMYLCASSS   94 (113)
T ss_dssp             EEEEEEEEC
T ss_pred             ccEEeeEcc
Confidence            999999864

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.57  E-value=0.00033  Score=43.44  Aligned_cols=73  Identities=15%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             ceeecCCCcEEEEEEEcccc--CCeEEEEeCC---Ce-eeEeecC-------CCCCcceEEEe-----eceEEEEEeecC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP--TPKITWRRED---NK-EIIVRSN-------PPSSQKVFSVE-----SEVLSLTKVTRS  208 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~---~~-~~~~~~~-------~~~~~~~~~~~-----~~~l~i~~~~~~  208 (238)
                      .+...+|++++|.|.+.+..  ...+.|++..   +. .+.....       ...........     ...|.|.+++.+
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~   89 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence            45677899999999976532  4469999832   11 1111111       01111111111     126999999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |+|.|.|....
T Consensus        90 Dsa~YyCA~~~  100 (120)
T d1ypzf1          90 DEAIYYCSYGE  100 (120)
T ss_dssp             GCSEEEEEECC
T ss_pred             cceeEEEEEcC
Confidence            99999998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.56  E-value=0.00015  Score=44.54  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--ee-eE--eec-C----CCCCcceEE----EeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--KE-II--VRS-N----PPSSQKVFS----VESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~~-~~--~~~-~----~~~~~~~~~----~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... ....+.||+...  .+ ..  ... .    .........    .....|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            34456888999999998753 245799997321  11 11  000 0    111111111    1123799999999999


Q ss_pred             eEEEEEeee
Q psy7941         211 GAYQCIAAN  219 (238)
Q Consensus       211 G~y~C~~~n  219 (238)
                      |.|.|.+..
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998753

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.0001  Score=44.81  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=45.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeee---EeecCccEEEEEcCCC
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEH---VITNNARLSVTHNDAN   98 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   98 (238)
                      .++.+.|.|.+.+..+.                        ...|.|++++..........   ....++.|+..+    
T Consensus        19 ~~~~~~L~Clv~~f~P~------------------------~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S----   70 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPR------------------------EAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSS----   70 (107)
T ss_dssp             HTTEEEEEEEEEEEBSS------------------------CCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEE----
T ss_pred             cCCceEEEEEEEEeeCC------------------------CCEEEEEECCEECCCCEEEecccccCCCCcEEEEE----
Confidence            46789999999864332                        34699999876543322211   112345666655    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.|..-.-.....|+|++.+.+.
T Consensus        71 --~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          71 --TLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             --EEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             --EEEECHHHhCCCCEEEEEEEECCC
Confidence              676654433344589999987543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00014  Score=45.03  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=44.2

Q ss_pred             ceeecCCCcEEEEEEEccccCC---eEEEEeCCCe---eeEe---ecCC--CCC-c----ceEEEeeceEEEEEeecCCC
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTP---KITWRREDNK---EIIV---RSNP--PSS-Q----KVFSVESEVLSLTKVTRSEM  210 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~---~~~~---~~~~--~~~-~----~~~~~~~~~l~i~~~~~~d~  210 (238)
                      .+.+..|..++|.|.......+   .+.|++....   .+..   ....  ... .    .........|.|.++..+|+
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            3557788999999997542222   5889984321   1111   1110  000 0    01112234799999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        88 a~YyCa~~~~   97 (118)
T d1i8lc_          88 GLYICKVELM   97 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEeEecc
Confidence            9999988653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=8.8e-05  Score=43.97  Aligned_cols=66  Identities=18%  Similarity=0.356  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .|+.+.|.|.+.| +|.. .++|.+ ++..+.....   .........    ......+...+...|+|.+.+..-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~-ng~~~~~~~~~~~~~~~~~t~~----~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTR-AGEVQEPELRGDVLHNGNGTYQ----SWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEE-TTEECCCSEEEEEEETTTTEEE----EEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEE-CCEECCCcEEeeeecCCCCeEE----EEEEeEeCCCCCCEEEEEEEECCC
Confidence            4678999999999 6755 899999 4443321100   000011111    122233455566689999999764

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00033  Score=42.47  Aligned_cols=69  Identities=26%  Similarity=0.409  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEee----cCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVR----SNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.| +|.. .|+|.+ ++..+...    ........-.....+.|.|..-.......|+|.+.+...
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~-ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEE-TTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEE-CCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            567899999988 5654 899998 55443211    101111111122223566654444445589999998764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00037  Score=40.67  Aligned_cols=70  Identities=10%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee--eeeEeecCccEEEEEcCCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI--HEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   98 (238)
                      ..++++.|.|.+.+.-+.                        ...|+|++++.......  .......++.+....    
T Consensus        13 ~~~~~~~L~C~a~gFyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s----   64 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPA------------------------DITLTWQLNGEELIQDMELVETRPAGDGTFQKWA----   64 (89)
T ss_dssp             SCSSEEEEEEEEESCBSS------------------------CCEEEEEETTEEECTTCEECCCEECSSSCEEEEE----
T ss_pred             CCCCCEEEEEEEEeEECC------------------------CCEEEEEECCEEeCCCEEECcEecCCCCcEEEEE----
Confidence            456789999999875333                        34689999876543211  122333445555443    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                        .|.+.   .++...|+|.+.+.+
T Consensus        65 --~l~v~---~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          65 --SVVVP---LGKEQYYTCHVYHQG   84 (89)
T ss_dssp             --EEEEE---SSTTTTCEEEEECSS
T ss_pred             --EEEec---CcCCCEEEEEEEECC
Confidence              55554   344557999997754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.52  E-value=0.00049  Score=41.29  Aligned_cols=71  Identities=18%  Similarity=0.237  Sum_probs=45.0

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee-eeeEeecCccEEEEEcCCCe
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI-HEHVITNNARLSVTHNDANT   99 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   99 (238)
                      ..|+..+|.|.+.+.-+.                        ...|.|++++....... .......++.|...+     
T Consensus        16 e~~~~~tL~C~v~gF~P~------------------------~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S-----   66 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPP------------------------MLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFS-----   66 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSS------------------------CEEEEEEETTEECSSCCCEEEEEETTTEEEEEE-----
T ss_pred             hcCCCeEEEEEEeeEECC------------------------CCEEEEEECCeecCCcEeceEEeCCCCcEEEEE-----
Confidence            468888999999875433                        34699999876532211 122233455566554     


Q ss_pred             EEEEEcccCcccCeEEEEEEecCCC
Q psy7941         100 WTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       100 ~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                       .|.+.   .+|...|+|.+.+.+.
T Consensus        67 -~L~v~---~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          67 -YLNFT---PEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             -EEEEC---CCTTCCEEEEEEETTT
T ss_pred             -EEEEe---cCCCCEEEEEEEeCCC
Confidence             56553   4556679999988654

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=3.1e-05  Score=46.80  Aligned_cols=68  Identities=25%  Similarity=0.425  Sum_probs=35.9

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCC-CcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPS-SQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .++.+.|.|.+.| +|.. .|.|..+ +........... .... ....+.|.|..-.. +.+.|+|.+.|..+
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~-~~~~~~~~~~~~~~~g~-ys~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSG-SLSSGVHTFPAVLQSDL-YTLSSSVTVTSSTW-PSQSITCNVAHPAS   89 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCEEETTE-EEEEEEEEECTTTT-TTSCCEEEEEEGGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcC-CccCCeEecccccCCCC-EEEEEEEEEehhHc-CCceEEEEEEECCC
Confidence            4678999999999 5655 8999663 321111111110 0111 11223455544433 24689999999765

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00024  Score=43.14  Aligned_cols=69  Identities=25%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeec----CCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRS----NPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ++.+.|.|.+.| +|.. .|+|.++ +.......    .......-.....+.|.|..-.......|+|.+.+...
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~n-g~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVD-NALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET-TEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEEC-CEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            467899999988 5654 8999994 43332111    01111111122233566655444444589999999764

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.50  E-value=7.6e-05  Score=45.01  Aligned_cols=68  Identities=18%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEe-ecC-CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP-KITWRREDNKEIIV-RSN-PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+..+.|.|.+.| +|.. .++|.++ +..... ... .. ..... ....+.|.+..-.......|+|.+.|..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgt-ys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNN-GKTELNYKNTEPVLDSDGS-YFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEET-TEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEEC-CEEccCcEEccceeCCCCc-EEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            3567899999998 6654 8999994 432211 111 00 01111 1222345555444444558999999865

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00016  Score=43.74  Aligned_cols=72  Identities=13%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .+.++.|.|.+.+..+.                        ...|+|++++........ ......++.|...+      
T Consensus        20 ~~~tv~L~Cl~~~f~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S------   69 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPG------------------------TIQITWLEDGQVMDVDLSTASTTQEGELASTQS------   69 (104)
T ss_dssp             CCSEEEEEEEEEEECCC------------------------CEEEEEEETTEECCGGGEEEEEEEETTEEEEEE------
T ss_pred             CCCeEEEEEEEEEEECC------------------------CcEEEEEECCEEccCCceeeeEeCCCCeEEEEE------
Confidence            45678899999864332                        236999998765432111 12223344555544      


Q ss_pred             EEEEcccCcccCeEEEEEEecCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.|..-.-.....|+|++.+.+
T Consensus        70 ~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          70 ELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETT
T ss_pred             EEEECHHHcCCCCEEEEEEEECC
Confidence            66665433334567999998764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.49  E-value=3.8e-06  Score=50.33  Aligned_cols=74  Identities=22%  Similarity=0.433  Sum_probs=45.2

Q ss_pred             eeecCCCcEEEEEEEccccCCeEEEEeCC--Ce--eeE-eec-C-CCCCcc-eEE----EeeceEEEEEeecCCCeEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTPKITWRRED--NK--EII-VRS-N-PPSSQK-VFS----VESEVLSLTKVTRSEMGAYQC  215 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~--~~--~~~-~~~-~-~~~~~~-~~~----~~~~~l~i~~~~~~d~G~y~C  215 (238)
                      +.+.+|++++|.|.... ....+.|++..  ..  .+. ... . .....+ ...    .....|.|.++..+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46789999999998754 23479999732  11  111 011 0 101111 111    112369999999999999999


Q ss_pred             EeeeCCC
Q psy7941         216 IAANGVP  222 (238)
Q Consensus       216 ~~~n~~g  222 (238)
                      .+....|
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            9876655

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=9.5e-05  Score=46.53  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=41.4

Q ss_pred             cCCCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---------CCCCcceEEEeeceEEEEEeecCCCe-EEEEEee
Q psy7941         151 PEGGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---------PPSSQKVFSVESEVLSLTKVTRSEMG-AYQCIAA  218 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~  218 (238)
                      ..+..+.|.|.+.| +|.. .|+|++ ++..+.....         ....... ....+.|.+..-...+.| .|+|.+.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~-~g~~~~~~~~t~~~~~~~~~~~~d~t-ys~sS~L~v~~~~W~~~g~~ytC~V~   95 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSR-YSLSSRLRVSATFWQNPRNHFRCQVQ   95 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEE-TTEEECSSEEECSSCEESCTTSTTCC-EEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEE-CCEEccCcEEecceeeeecccCCCCe-EEEEEEEEECHHHhCCCCCEEEEEEE
Confidence            34567899999998 5644 899999 5544421100         0011111 222345666655556666 7999999


Q ss_pred             eCC
Q psy7941         219 NGV  221 (238)
Q Consensus       219 n~~  221 (238)
                      +..
T Consensus        96 H~~   98 (127)
T d1ogae2          96 FYG   98 (127)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.47  E-value=3.5e-05  Score=46.73  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.| +|.. .|.|.+ ++..+.....  ............+.|.+..-...+...|+|.+.+...
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKA-NGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEE-TTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEE-CCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            456889999988 5654 899999 5554432111  0010111111223455554445555689999999765

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.8e-05  Score=46.38  Aligned_cols=68  Identities=24%  Similarity=0.423  Sum_probs=37.7

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC---CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN---PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ++.+.|.|.+.| +|.. .+.|.+ ++..+.....   ......-.....+.|.+..-.......|+|.+.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKA-DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEE-TTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEE-CCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            566899999999 5644 899999 5543322110   000001011222345554433333458999999964

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.47  E-value=0.00077  Score=41.88  Aligned_cols=74  Identities=19%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             ceeecCCCcEEEEEEEcccc--CCeEEEEeCC---Cee-eEeec-------CCC-CCcceEEEe-----eceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP--TPKITWRRED---NKE-IIVRS-------NPP-SSQKVFSVE-----SEVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~---~~~-~~~~~-------~~~-~~~~~~~~~-----~~~l~i~~~~~  207 (238)
                      .+...+|+.++|.|.+.|..  ...+.|++..   +.. +....       ... ...+.....     ...|.|.++..
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            35667899999999998743  3478999832   111 11100       011 111222111     13699999999


Q ss_pred             CCCeEEEEEeeeC
Q psy7941         208 SEMGAYQCIAANG  220 (238)
Q Consensus       208 ~d~G~y~C~~~n~  220 (238)
                      +|+|.|.|.....
T Consensus        90 ~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          90 QDIATYYCALWEA  102 (123)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             ccCcEEEEeeeCC
Confidence            9999999987543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.46  E-value=0.00014  Score=44.56  Aligned_cols=74  Identities=14%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC---e-eeEeecC-------CCCCcceEEE----eeceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN---K-EIIVRSN-------PPSSQKVFSV----ESEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~---~-~~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|++++|.|.... ....+.||+...   . .+.....       ..........    ....|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            34466789999999998543 345799998321   1 1111000       1111111111    12369999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998853

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.0026  Score=38.90  Aligned_cols=72  Identities=28%  Similarity=0.451  Sum_probs=43.6

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ce--eeEe--ecC-------CCCCcceEEEe-----eceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NK--EIIV--RSN-------PPSSQKVFSVE-----SEVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~--~~~~--~~~-------~~~~~~~~~~~-----~~~l~i~~~~~~  208 (238)
                      ..+++|++++|.|.+.|..  .-.+.|++.. ++  ....  ...       .....+.....     ...|.|.++..+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            3577899999999998754  3368998731 11  1111  100       11111222211     125999999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        90 DsAvYYCA~~~  100 (119)
T d1qnzh_          90 DSAVYYCAIHY  100 (119)
T ss_dssp             GCEEEEEEECS
T ss_pred             ceeEEEEEEec
Confidence            99999996543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.45  E-value=9.2e-05  Score=45.48  Aligned_cols=76  Identities=18%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC-e---eeEeecC------CCCC-cceE---EEeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN-K---EIIVRSN------PPSS-QKVF---SVESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~-~---~~~~~~~------~~~~-~~~~---~~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|++++|.|.... ....+.||+... .   .+.....      .... ....   ......|.|..+..+|+
T Consensus         5 P~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            34467889999999998743 235799998321 1   1111110      0000 0110   11224689999999999


Q ss_pred             eEEEEEeeeCC
Q psy7941         211 GAYQCIAANGV  221 (238)
Q Consensus       211 G~y~C~~~n~~  221 (238)
                      |.|.|.+....
T Consensus        84 a~YyCA~~~~~   94 (112)
T d2cdeb1          84 SQYLCASSENI   94 (112)
T ss_dssp             SEEEEEEECSS
T ss_pred             ccEEEEEecCC
Confidence            99999886543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00013  Score=44.01  Aligned_cols=84  Identities=21%  Similarity=0.344  Sum_probs=48.4

Q ss_pred             eccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeee-eeeeEeecCccE
Q psy7941          12 LYPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLA-IHEHVITNNARL   90 (238)
Q Consensus        12 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~   90 (238)
                      +.+|....+..+++++|.|.+.+..+..                      ....+.|++++...... ........++.|
T Consensus         5 l~pPs~~~l~~~~~~tL~C~v~gf~P~~----------------------~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~   62 (103)
T d1fp5a1           5 LSRPSPFDLFIRKSPTITCLVVDLAPSK----------------------GTVNLTWSRASGKPVNHSTRKEEKQRNGTL   62 (103)
T ss_dssp             EECCCHHHHHTTCCCEEEEEEEESSCCS----------------------SCCEEEEEETTCCCCCCCEEEEEEETTTEE
T ss_pred             EeCcCHHHHhhCCCeEEEEEEEeeECCC----------------------ceEEEEEcCCCceecccEEcccEECCCCCE
Confidence            3444444455688899999998643221                      12357899887654332 122223345566


Q ss_pred             EEEEcCCCeEEEEEcccCcccCeEEEEEEecCC
Q psy7941          91 SVTHNDANTWTLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus        91 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      ...+      .|.|..-.-.....|+|++.+..
T Consensus        63 s~~S------~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          63 TVTS------TLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             EEEE------EEECCHHHHHTTCCEEEEEECSS
T ss_pred             EEEE------EEEEcHHHhCCCCeEEEEEEECC
Confidence            6554      56554332233568999998754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.43  E-value=0.00018  Score=44.08  Aligned_cols=74  Identities=12%  Similarity=0.337  Sum_probs=44.9

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCC--e-eeEe--ecC------CCCCcceEEEe----eceEEEEEeecCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDN--K-EIIV--RSN------PPSSQKVFSVE----SEVLSLTKVTRSE  209 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~--~-~~~~--~~~------~~~~~~~~~~~----~~~l~i~~~~~~d  209 (238)
                      +..+.+.+|++++|.|...+ ....+.||+...  . ....  ...      ...........    ...|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            44566889999999998543 235799997421  1 1111  000      11111111111    1379999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (111)
T d2esve1          85 SGVYFCASSQ   94 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEeeeC
Confidence            9999998654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.43  E-value=0.0004  Score=42.22  Aligned_cols=71  Identities=23%  Similarity=0.446  Sum_probs=44.0

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ce--eeEeecC---------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NK--EIIVRSN---------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~--~~~~~~~---------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+.  .-.+.|++.- ++  .-.....         .....+.....+     -.|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4678899999999999854  3378998732 11  1111000         111222222221     25888899999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|.-.
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jpth1          90 DTAVYYCARD   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeec
Confidence            9999999654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.42  E-value=9.4e-05  Score=46.55  Aligned_cols=86  Identities=14%  Similarity=0.328  Sum_probs=49.9

Q ss_pred             cccee-ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeee-----
Q psy7941           8 EPDFL-YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHE-----   81 (238)
Q Consensus         8 ~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-----   81 (238)
                      +|.+. ..|.......+..+.|.|.+.+..+.                        ...|.|++++.........     
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~------------------------~i~v~W~~~g~~~~~~~~t~~~~~   59 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPD------------------------HVELSWWVNGKEVHSGVSTDPQPL   59 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS------------------------CEEEEEEETTEEECSSEEECSSCE
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCC------------------------CeEEEEEECCEEccCcEEecceee
Confidence            45443 33433334567889999999875433                        3359999977654321111     


Q ss_pred             --eEeecCccEEEEEcCCCeEEEEEcccCcccCe-EEEEEEecCC
Q psy7941          82 --HVITNNARLSVTHNDANTWTLNIRSVRREDRG-YYMCQVNTNP  123 (238)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~  123 (238)
                        .....++.|+..+      .|.|..-.-.+.| .|+|++.+.+
T Consensus        60 ~~~~~~~d~tys~sS------~L~v~~~~W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          60 KEQPALNDSRYSLSS------RLRVSATFWQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             ESCTTSTTCCEEEEE------EEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             eecccCCCCeEEEEE------EEEECHHHhCCCCCEEEEEEEECC
Confidence              0112345666654      6776544334545 7999997754

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0017  Score=38.99  Aligned_cols=82  Identities=7%  Similarity=0.127  Sum_probs=44.8

Q ss_pred             ccCceeEEEecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEE
Q psy7941          13 YPLENVTIAQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLS   91 (238)
Q Consensus        13 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~   91 (238)
                      ..+........+.+.|.|.+.+..+.                        ...++|.+++........ ......++.|.
T Consensus        11 l~p~~~~~~~~~~~~l~Cl~~gF~P~------------------------~i~v~W~~~~~~~~~~~~~~~~~~~~gtys   66 (105)
T d1dn0b2          11 LVSCENSPSDTSSVAVGCLAQDFLPD------------------------SITFSWKYKNNSDISSTRGFPSVLRGGKYA   66 (105)
T ss_dssp             EECC------CCSEEEEEEEEEEBSS------------------------CCEEEEEETTSCEECCEEECCCEEETTEEE
T ss_pred             ECCCccccCCCCceEEEEEEecccCC------------------------cEEEEEEECCccccCCEEcceEEccCCCEE
Confidence            34444444567889999999875433                        246999998765433221 11222345555


Q ss_pred             EEEcCCCeEEEEEcccCcc--cCeEEEEEEecCCC
Q psy7941          92 VTHNDANTWTLNIRSVRRE--DRGYYMCQVNTNPM  124 (238)
Q Consensus        92 ~~~~~~~~~~L~i~~~~~~--d~G~Y~C~~~~~~~  124 (238)
                      ..+      .|.|..-.-.  ....|+|.+.+...
T Consensus        67 ~~S------~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          67 ATS------QVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             EEE------EEEECTTCC---CCCEEEEEEECTTC
T ss_pred             EEE------EEEEcHHHhccCCCCEEEEEEEECCC
Confidence            544      6666543321  22479999987643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00027  Score=42.48  Aligned_cols=71  Identities=10%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeE
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (238)
                      ..++.+.|.|.+.+..+.                        ...|+|.+++..... ........++.|...+      
T Consensus        18 ~~~~~~~l~Cl~~gf~P~------------------------~i~v~W~~~~~~~~~-~~~~~~~~~g~ys~~S------   66 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPE------------------------PVTLTWNSGSLSSGV-HTFPAVLQSDLYTLSS------   66 (102)
T ss_dssp             ----CEEEEEEEEEEBSS------------------------CCEEEEGGGTBCTTE-EECCCEEETTEEEEEE------
T ss_pred             cCCCcEEEEEEEeeeeCC------------------------CeEEEECcCCccCCe-EecccccCCCCEEEEE------
Confidence            467899999999875333                        346999765533222 1122223455666544      


Q ss_pred             EEEEcccCcccCeEEEEEEecCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.|..-.- +.+.|+|.+.+.+
T Consensus        67 ~L~v~~~~w-~~~~ytC~V~H~~   88 (102)
T d1mjuh2          67 SVTVTSSTW-PSQSITCNVAHPA   88 (102)
T ss_dssp             EEEECTTTT-TTSCCEEEEEEGG
T ss_pred             EEEEehhHc-CCceEEEEEEECC
Confidence            676655543 3578999998754

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00014  Score=41.24  Aligned_cols=21  Identities=29%  Similarity=0.729  Sum_probs=17.4

Q ss_pred             EEEEcccCc-ccCeEEEEEEec
Q psy7941         101 TLNIRSVRR-EDRGYYMCQVNT  121 (238)
Q Consensus       101 ~L~i~~~~~-~d~G~Y~C~~~~  121 (238)
                      .|.+.+-+. +++|.|.|.+..
T Consensus        49 ~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_          49 HLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEEETTCCHHHHCEEEEEEETT
T ss_pred             eEEecccCccccCceEEEEcCC
Confidence            678888876 799999999843

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.41  E-value=0.00017  Score=44.31  Aligned_cols=75  Identities=11%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             CCceeecCCCcEEEEEEEccccCCeEEEEeCCCe----eeEe-ecC-----CCCCcce-EE---EeeceEEEEEeecCCC
Q psy7941         145 SGDMMVPEGGSAKLVCKAKGYPTPKITWRREDNK----EIIV-RSN-----PPSSQKV-FS---VESEVLSLTKVTRSEM  210 (238)
Q Consensus       145 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~----~~~~-~~~-----~~~~~~~-~~---~~~~~l~i~~~~~~d~  210 (238)
                      +..+.+.+|+.+.|.|.... ....+.||+....    .+.. ...     ....... ..   .....|.|.++..+|+
T Consensus         8 P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   86 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCc
Confidence            44567889999999998643 2357999984311    1110 000     0000111 11   1123688999999999


Q ss_pred             eEEEEEeeeC
Q psy7941         211 GAYQCIAANG  220 (238)
Q Consensus       211 G~y~C~~~n~  220 (238)
                      |.|.|.+...
T Consensus        87 a~YyCa~~~~   96 (113)
T d1nfdb1          87 AMYFCASSLR   96 (113)
T ss_dssp             EEECEEEESS
T ss_pred             eeEEEEeecC
Confidence            9999987643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0013  Score=36.46  Aligned_cols=58  Identities=14%  Similarity=0.324  Sum_probs=36.4

Q ss_pred             cCCCcEEEEEEEcccc--CCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeee
Q psy7941         151 PEGGSAKLVCKAKGYP--TPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAAN  219 (238)
Q Consensus       151 ~~g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n  219 (238)
                      ..|..+.|.|.....+  .---.|.+ +++.+.....+.        ....+.+.  ..+++|.|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K-~gkvl~ed~~~~--------~~tey~V~--~~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDALPG--------QKTEFKVD--SDDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEES-SSEEEECTTCCC--------SEEEEEEC--GGGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEee-CCEEccccCCCC--------CceEEEEe--cCCCCceEEEEEcC
Confidence            3477889999986643  33689999 676665322111        01123333  37799999999753

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00017  Score=43.36  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeec-C-CC-CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRS-N-PP-SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      .+.+.|.|.+.| +|.. .++|.++ +....... . .. ..... ....+.|.+..-.......|+|.+.+..-
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~-g~~~~~~~~~~~~~~~dgt-~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMN-GQPQENYKNTPPTMDTDGS-YFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET-TEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEEC-CeeccCcEEcccEeCCCCC-EEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            457899999988 5654 8999995 43322111 0 00 00111 11223455554444455589999999653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00013  Score=43.82  Aligned_cols=68  Identities=13%  Similarity=0.234  Sum_probs=38.3

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC--CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN--PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+.+.|.|.+.| +|.. .+.|.+ ++........  ......-.....+.|.+..-.......|+|.+.+..
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~-~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQW-NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEE-CCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            456899999999 5654 899999 4443321110  000011011222345554444444568999999875

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00062  Score=40.47  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=39.8

Q ss_pred             eecCCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         149 MVPEGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+..|++++|.|... .....+.+++++...........  ..........+.|..+...|.|.|+|......
T Consensus        14 ~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~--~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQ--PHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC--------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeE--EcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            477899999999853 23446777774432211000000  00001112358889999999999999886443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0003  Score=41.66  Aligned_cols=71  Identities=10%  Similarity=0.242  Sum_probs=42.2

Q ss_pred             EecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee--eeEeecCccEEEEEcCCC
Q psy7941          21 AQGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH--EHVITNNARLSVTHNDAN   98 (238)
Q Consensus        21 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   98 (238)
                      ..++.+.|.|.+.+.-+.                        ...++|++++........  ......+..+....    
T Consensus        13 ~~~~~~~L~C~~~gFyP~------------------------~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s----   64 (95)
T d1k5na1          13 ISDHEATLRCWALGFYPA------------------------EITLTWQRDGEDQTQDTELVETRPAGDRTFQKWA----   64 (95)
T ss_dssp             EETTEEEEEEEEEEEBSS------------------------CCEEEEEETTEECGGGCEECCCEECSSSCEEEEE----
T ss_pred             CCCCCEEEEEEEEeEeCC------------------------CCEEEEEECCEEcCCCceeccEEcCCCCeEEEEE----
Confidence            356789999999875433                        346999998765432111  11222333444333    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.+.   .++...|+|++.+.+.
T Consensus        65 --~l~v~---~~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          65 --AVVVP---SGEEQRYTCHVQHEGL   85 (95)
T ss_dssp             --EEEEE---TTCGGGEEEEEECTTC
T ss_pred             --EEEEE---cCCCCEEEEEEEECcC
Confidence              45443   4455689999987654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.36  E-value=0.00073  Score=41.15  Aligned_cols=74  Identities=28%  Similarity=0.464  Sum_probs=45.5

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ce--eeEeecC---------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NK--EIIVRSN---------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~--~~~~~~~---------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|....  .+.|++.. ++  +-.....         .....+.....+     -.|.+.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            457889999999999885433  68898732 11  1111100         111122222221     25889999999


Q ss_pred             CCeEEEEEeeeCC
Q psy7941         209 EMGAYQCIAANGV  221 (238)
Q Consensus       209 d~G~y~C~~~n~~  221 (238)
                      |++.|.|......
T Consensus        90 DtAvYYCAr~~~~  102 (118)
T d2fbjh1          90 DTALYYCARLHYY  102 (118)
T ss_dssp             GCEEEEEEEEETT
T ss_pred             cceEEEeeEecCC
Confidence            9999999876543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.36  E-value=0.00016  Score=42.77  Aligned_cols=66  Identities=17%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCC--C--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNP--P--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.| +|.. .++|.+ ++..+......  .  ............|   .+...+...|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~~~~~~~~~~~~~~~ty~~~s~l---~v~~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQ-DGVSLSHDTQQWGDVLPDGNGTYQTWVAT---RICQGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEE-TTEECCSTTSEECCCEECSSSCEEEEEEE---EEETTCGGGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeE-CCeEcCCCeEEcCceEECCCCcEEEEEEE---EEcCCCCCEEEEEEEECCC
Confidence            456899999999 6655 899999 44433211110  0  0000001111123   3444455589999998643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.34  E-value=0.00064  Score=40.05  Aligned_cols=70  Identities=9%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeee---eeeEeecCccEEEEEcCCC
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAI---HEHVITNNARLSVTHNDAN   98 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   98 (238)
                      .++.+.|.|.+.+.-+.                        ...++|++++.......   .......++.|....    
T Consensus        14 ~~~~~~L~C~~~gFyP~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s----   65 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPW------------------------NITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWV----   65 (94)
T ss_dssp             SSSEEEEEEEEEEEBSS------------------------CCEEEEEETTEECCSTTSEECCCEECSSSCEEEEE----
T ss_pred             CCCCEEEEEEEEEEECC------------------------CcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEE----
Confidence            45678999999875333                        34699999876543211   111122234454433    


Q ss_pred             eEEEEEcccCcccCeEEEEEEecCCC
Q psy7941          99 TWTLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus        99 ~~~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                        .|.+.   .++...|+|++.+.+.
T Consensus        66 --~l~v~---~~~~~~ytC~V~H~~~   86 (94)
T d1hyrc1          66 --ATRIC---QGEEQRFTCYMEHSGN   86 (94)
T ss_dssp             --EEEEE---TTCGGGEEEEEEETTE
T ss_pred             --EEEEc---CCCCCEEEEEEEECCC
Confidence              45443   3445579999987653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00024  Score=42.76  Aligned_cols=71  Identities=20%  Similarity=0.401  Sum_probs=44.5

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      .+..+.|.|.+.+..+.                        ...++|.+++..............++.|+..+      .
T Consensus        19 ~~~~~tl~Cl~~~f~P~------------------------~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S------~   68 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPE------------------------PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS------V   68 (103)
T ss_dssp             ETTEEEEEEEEEEEBSS------------------------CCEEEEGGGTBCTTEEECCCEECTTSCEEEEE------E
T ss_pred             CCCeEEEEEEEEeEeCC------------------------CeEEEECcCCCCCCEEECCCeECCCCCEEEEE------E
Confidence            57789999999875333                        34699977664433322233334566676655      6


Q ss_pred             EEEcccCcccCeEEEEEEecCC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      |.|..-.. ..+.|+|.+.+..
T Consensus        69 L~v~~~~w-~~~~ytC~V~H~~   89 (103)
T d1c5ch2          69 VTVPSSSL-GTQTYICNVNHKP   89 (103)
T ss_dssp             EEEEGGGG-GTCCCEEEEEEGG
T ss_pred             EEECcccc-CCCeEEEEEEeCC
Confidence            76654332 3467999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.33  E-value=0.00086  Score=40.98  Aligned_cols=73  Identities=21%  Similarity=0.419  Sum_probs=45.0

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCC-e--eeEeecC--------CCCCcceEEEee-----ceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K--EIIVRSN--------PPSSQKVFSVES-----EVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~--~~~~~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~d  209 (238)
                      ..+++|+++.|.|.+.|....  .+.|++... +  +......        .....++....+     -.|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            457889999999999886543  688987421 1  1111010        111112222221     168999999999


Q ss_pred             CeEEEEEeeeC
Q psy7941         210 MGAYQCIAANG  220 (238)
Q Consensus       210 ~G~y~C~~~n~  220 (238)
                      ++.|.|.....
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.33  E-value=0.00066  Score=41.54  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=43.5

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCC-e--eeEeecC--------CCCCcceEEEee-----ceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K--EIIVRSN--------PPSSQKVFSVES-----EVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~--~~~~~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~d  209 (238)
                      ..+++|++++|.|.+.|+...  .+.|++... +  .......        .....++....+     -.|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            357889999999999986544  688987421 1  1111000        111222222221     258999999999


Q ss_pred             CeEEEEEe
Q psy7941         210 MGAYQCIA  217 (238)
Q Consensus       210 ~G~y~C~~  217 (238)
                      ++.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999953

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00013  Score=44.08  Aligned_cols=68  Identities=21%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             CCcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecC-CCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         153 GGSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSN-PPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       153 g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+.|.|.+.+ +|.. .|+|.++ +........ ............+.|.+..-... ...|+|.+.|..+
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~-~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~   90 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSG-ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPS   90 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGG-TBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGG
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcC-CCCCCEEECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCC
Confidence            567899999988 5655 8999764 322111111 10111111122234555443332 3579999999765

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00076  Score=41.02  Aligned_cols=74  Identities=19%  Similarity=0.389  Sum_probs=45.7

Q ss_pred             eeecCCCcEEEEEEEccccC--CeEEEEeCC-Ceee--Ee--e-cC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPT--PKITWRRED-NKEI--IV--R-SN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~-~~~~--~~--~-~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+..  -.+.|++.. ++.+  ..  . ..      +....++.... .    -.|.|.+++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            45788999999999988543  368898732 1111  10  0 00      11122222221 1    15899999999


Q ss_pred             CCeEEEEEeeeCC
Q psy7941         209 EMGAYQCIAANGV  221 (238)
Q Consensus       209 d~G~y~C~~~n~~  221 (238)
                      |++.|.|......
T Consensus        90 DtAvYYCA~~~~~  102 (117)
T d1iqdb1          90 DTAVYYCAVPDPD  102 (117)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             cceEEEEeEcCCC
Confidence            9999999876543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.0012  Score=39.97  Aligned_cols=72  Identities=17%  Similarity=0.417  Sum_probs=44.7

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--EeecC--------CCCCcceEEEee-----ceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IVRSN--------PPSSQKVFSVES-----EVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~d  209 (238)
                      ..+++|++++|.|.+.|+...  .+.|++.- ++.+  .....        +....++....+     -.|.+.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            457889999999999986543  68898732 1111  11000        111222222221     268999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      ++.|.|....
T Consensus        90 tAvYYCAr~~   99 (117)
T d1c5db1          90 TAIYFCTRED   99 (117)
T ss_dssp             CEEEEEEECC
T ss_pred             ceEEEEeccC
Confidence            9999997543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0002  Score=40.67  Aligned_cols=75  Identities=25%  Similarity=0.497  Sum_probs=45.2

Q ss_pred             CCCcEEEEEEEccccCCeEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeec-CCCeEEEEEeeeCCCCCccceEE
Q psy7941         152 EGGSAKLVCKAKGYPTPKITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTR-SEMGAYQCIAANGVPPTVSKRLM  230 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~n~~g~~~~~~~~  230 (238)
                      .|.++.|.|+-  .....+.|.+ ++..+....    ...........|.+.+.+. +++|.|.|.+...........+.
T Consensus         9 SGTtV~LTCP~--~~~~~i~W~~-n~~~~~~~~----~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LY   81 (91)
T d1xiwa_           9 SGTTVILTCPQ--YPGSEILWQH-NDKNIGGDE----DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY   81 (91)
T ss_dssp             ETTEEEEECSS--CTTSCEEEEE-TTEEESSSC----SCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEE
T ss_pred             eCCEEEEECCC--CCCCceeeee-ccccccCCC----cccccccccceEEecccCccccCceEEEEcCCCCCCCcceEEE
Confidence            48999999963  2456899998 443332111    0111223334677777766 79999999996543323344455


Q ss_pred             EEE
Q psy7941         231 LHV  233 (238)
Q Consensus       231 l~V  233 (238)
                      |.+
T Consensus        82 LKA   84 (91)
T d1xiwa_          82 LRA   84 (91)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00019  Score=43.27  Aligned_cols=70  Identities=11%  Similarity=0.232  Sum_probs=37.3

Q ss_pred             CCCcEEEEEEEcc-ccCC---eEEEEeCCCeeeEeecCC-CCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         152 EGGSAKLVCKAKG-YPTP---KITWRREDNKEIIVRSNP-PSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       152 ~g~~~~l~C~~~~-~p~~---~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      .+..+.|.|.+.+ +|.+   .++|.+++.......... .....-.....+.|.|..-.....-.|+|.+.|..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            4667899999988 4543   789999554322211110 00001011122244443333333447999999865

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=0.0015  Score=39.66  Aligned_cols=69  Identities=19%  Similarity=0.366  Sum_probs=42.4

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ce--eeEeecCC---------CCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NK--EIIVRSNP---------PSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~--~~~~~~~~---------~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+.  ...+.|++.. ++  +-......         ....+.....+     -.|.+.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            4578899999999998854  3368898732 11  11111110         01112222221     25889999999


Q ss_pred             CCeEEEEE
Q psy7941         209 EMGAYQCI  216 (238)
Q Consensus       209 d~G~y~C~  216 (238)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (118)
T d1nlbh1          90 DTATYFCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.27  E-value=0.00029  Score=40.80  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=34.3

Q ss_pred             CcEEEEEEEcc-ccCC-eEEEEeCCCeeeEeecCCCCCcceEEEeeceEEEEEeecCCCeEEEEEeeeCC
Q psy7941         154 GSAKLVCKAKG-YPTP-KITWRREDNKEIIVRSNPPSSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGV  221 (238)
Q Consensus       154 ~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~  221 (238)
                      ..+.|.|.+.| +|.. .+.|.+ ++........     ......+....++.........|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~-~g~~~~~~~~-----~~~~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVS-SKKITEFDPA-----IVISPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEEC-SSEEEECCCE-----EEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEE-CCEEccCcEE-----eeeccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            45689999999 5544 899998 5544332111     0001111122223333344458999999864

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.25  E-value=0.00085  Score=41.31  Aligned_cols=73  Identities=25%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCC-e--eeE--eec-C------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K--EII--VRS-N------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~--~~~--~~~-~------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|....  .+.|++... +  +..  ... .      .....++....+     -.|.+.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            457889999999999986533  789987321 1  111  110 0      011122222221     26888999999


Q ss_pred             CCeEEEEEeeeC
Q psy7941         209 EMGAYQCIAANG  220 (238)
Q Consensus       209 d~G~y~C~~~n~  220 (238)
                      |++.|.|.....
T Consensus        89 DtAvYYCAr~~~  100 (124)
T d1zvya1          89 DTAIYTCGATRK  100 (124)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeeccc
Confidence            999999987543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.25  E-value=3e-05  Score=47.08  Aligned_cols=72  Identities=14%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .++++.|.|.+.+....                        ...|.|++++........ ......++.|+..+      
T Consensus        19 ~~~~~~l~C~~~gf~P~------------------------~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S------   68 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPG------------------------SATVTWKANGATINDGVKTTKPSKQGQNYMTSS------   68 (104)
T ss_dssp             HTTEECCCEEEEEEBSS------------------------CCEEEEEETTEEECSSCBCCCCBCSSSCEEEEE------
T ss_pred             cCCcEEEEEEEEEeeCC------------------------CCEEEEEECCEECCCCEEeccccCCCceEEEEE------
Confidence            46778999999864322                        246999998766542221 11122345555544      


Q ss_pred             EEEEcccCcccCeEEEEEEecCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      .|.|..-.-.+...|+|.+.+.+
T Consensus        69 ~l~v~~~~w~~~~~ytC~V~H~~   91 (104)
T d1nfde2          69 YLSLTADQWKSHNRVSCQVTHEG   91 (104)
T ss_dssp             BCCEEHHHHHTCSCEEEEEECTT
T ss_pred             EEEEcHHHcCCCCEEEEEEEECC
Confidence            44444333344568999998754

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00094  Score=41.15  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=41.5

Q ss_pred             eecCCCcEEEEEEEcccc--CC-eEEEEeCCCee---eE-eecC-CC-----CCcceE--EEe--eceEEEEEeecCCCe
Q psy7941         149 MVPEGGSAKLVCKAKGYP--TP-KITWRREDNKE---II-VRSN-PP-----SSQKVF--SVE--SEVLSLTKVTRSEMG  211 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p--~~-~~~W~~~~~~~---~~-~~~~-~~-----~~~~~~--~~~--~~~l~i~~~~~~d~G  211 (238)
                      .+..|+.++|.|...+..  .. .+.|++..+..   +. .... ..     ......  ...  ...|.|.+++.+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            356688999999986532  22 35666643321   11 1110 00     001111  111  226999999999999


Q ss_pred             EEEEEeeeCC
Q psy7941         212 AYQCIAANGV  221 (238)
Q Consensus       212 ~y~C~~~n~~  221 (238)
                      .|.|.+....
T Consensus        91 vYyCa~~~~~  100 (118)
T d1yjdc1          91 IYFCKIEVMY  100 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEeccc
Confidence            9999876543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.24  E-value=0.0028  Score=38.59  Aligned_cols=71  Identities=23%  Similarity=0.471  Sum_probs=43.9

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--E--ee-cC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--I--VR-SN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~--~~-~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. ++.+  .  .. ..      .....++.... +    -.|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            457889999999999985433  68998732 1111  1  00 00      11112222222 1    26889999999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.23  E-value=0.0007  Score=40.58  Aligned_cols=71  Identities=23%  Similarity=0.479  Sum_probs=43.9

Q ss_pred             eeecCCCcEEEEEEEccccC--CeEEEEeCCC-eee--EeecC-----------CCCCcceEEEee-----ceEEEEEee
Q psy7941         148 MMVPEGGSAKLVCKAKGYPT--PKITWRREDN-KEI--IVRSN-----------PPSSQKVFSVES-----EVLSLTKVT  206 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~-~~~--~~~~~-----------~~~~~~~~~~~~-----~~l~i~~~~  206 (238)
                      ..+++|++++|.|.+.|...  -.+.|++... +.+  .....           +....++....+     -.|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            56789999999999988543  3789987321 111  11000           111122222221     268889999


Q ss_pred             cCCCeEEEEEee
Q psy7941         207 RSEMGAYQCIAA  218 (238)
Q Consensus       207 ~~d~G~y~C~~~  218 (238)
                      .+|++.|.|.-.
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999853

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.22  E-value=0.0013  Score=39.86  Aligned_cols=73  Identities=23%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ce--eeEeecC--------CCCCcceEEEe-----eceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NK--EIIVRSN--------PPSSQKVFSVE-----SEVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~--~~~~~~~--------~~~~~~~~~~~-----~~~l~i~~~~~~d  209 (238)
                      ..+++|++++|.|.+.|+...  .+.|++.. ++  +......        .....++....     .-.|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            457889999999999986433  68898732 11  1111100        01111222221     1268899999999


Q ss_pred             CeEEEEEeeeC
Q psy7941         210 MGAYQCIAANG  220 (238)
Q Consensus       210 ~G~y~C~~~n~  220 (238)
                      ++.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999986443

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.22  E-value=0.00023  Score=43.48  Aligned_cols=72  Identities=11%  Similarity=0.296  Sum_probs=43.0

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      .++++.|.|.+.+..+.                        ...|.|.+++...... .......++.|...+      .
T Consensus        26 ~~~~~tL~C~v~gf~P~------------------------~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~S------~   74 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPA------------------------DINVEWDSSEPSDYKN-TPPVFDTDGSFFLYS------R   74 (111)
T ss_dssp             CTTSCCEEEEEESCCSS------------------------CCEEESSSCCTTTEEE-EEEECCSSCCCEEEE------E
T ss_pred             cCCceEEEEEEEeeECC------------------------CcEEEEeeCCCCCcEE-cccEECCCCcEEEEE------E
Confidence            46789999999875333                        3469998876543222 222233455666554      5


Q ss_pred             EEEcccCcccCeEEEEEEecCCC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      |.|..-.-.....|+|.+.+.+.
T Consensus        75 L~v~~~~W~~~~~ytC~V~H~~l   97 (111)
T d1pfca_          75 LKVDTDAWNNGESFTCSVMHEAL   97 (111)
T ss_dssp             ECCCSSCCHHHHCCEEEEEETTT
T ss_pred             EEECHHHhCCCCEEEEEEEeCCC
Confidence            55533322224579999987654

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.21  E-value=0.00086  Score=40.70  Aligned_cols=72  Identities=15%  Similarity=0.338  Sum_probs=44.4

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ce--eeEeecC--------CCCCcceEEEe-e----ceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NK--EIIVRSN--------PPSSQKVFSVE-S----EVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~--~~~~~~~--------~~~~~~~~~~~-~----~~l~i~~~~~~d  209 (238)
                      ..+++|+++.|.|.+.|....  .+.|++.. ++  .-.....        +....++.... +    -.|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            457889999999999986543  68898742 11  1111111        11111222222 1    158999999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      ++.|.|.-..
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999998543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.21  E-value=0.0013  Score=40.04  Aligned_cols=73  Identities=25%  Similarity=0.480  Sum_probs=45.0

Q ss_pred             ceeecCCCcEEEEEEEccccCC--eEEEEeCCC-eee--E--ee-cC------CCCCcceEEEee-----ceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTP--KITWRREDN-KEI--I--VR-SN------PPSSQKVFSVES-----EVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~~~--~--~~-~~------~~~~~~~~~~~~-----~~l~i~~~~~  207 (238)
                      ...+++|++++|.|.+.|+...  .+.|++... +.+  .  .. ..      .....++....+     ..|.|.+++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            3567889999999999986544  689987421 111  0  11 00      111122222111     2588999999


Q ss_pred             CCCeEEEEEeee
Q psy7941         208 SEMGAYQCIAAN  219 (238)
Q Consensus       208 ~d~G~y~C~~~n  219 (238)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1um5h1          88 EDSAVYYCARSS   99 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecc
Confidence            999999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.21  E-value=0.0008  Score=40.68  Aligned_cols=71  Identities=24%  Similarity=0.436  Sum_probs=43.8

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCCC-e--eeE--ee-cC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRREDN-K--EII--VR-SN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~-~--~~~--~~-~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|++++|.|.+.|..  ...+.|++... +  .-.  .. ..      +....+..... +    -.|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            4578899999999998854  33688987421 1  111  10 10      11112222222 1    15899999999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|...
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.19  E-value=0.0011  Score=41.11  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=44.2

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCCC----eeeE--eec--C---------CCCCcceEEEe-----eceEEEE
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRREDN----KEII--VRS--N---------PPSSQKVFSVE-----SEVLSLT  203 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~----~~~~--~~~--~---------~~~~~~~~~~~-----~~~l~i~  203 (238)
                      ..+++|++++|.|.+.|+.  .-.+.|++...    +.+.  ...  .         .....+.....     .-.|.|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            4578899999999998854  33689987421    1110  000  0         11111222211     1268899


Q ss_pred             EeecCCCeEEEEEeee
Q psy7941         204 KVTRSEMGAYQCIAAN  219 (238)
Q Consensus       204 ~~~~~d~G~y~C~~~n  219 (238)
                      +++.+|++.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.0009  Score=40.70  Aligned_cols=70  Identities=24%  Similarity=0.422  Sum_probs=42.9

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCC-e--eeEeecC---------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K--EIIVRSN---------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~--~~~~~~~---------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++... +  +-.....         +....++....+     ..|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            457889999999999886533  689987321 1  1111110         001112212211     26889999999


Q ss_pred             CCeEEEEEe
Q psy7941         209 EMGAYQCIA  217 (238)
Q Consensus       209 d~G~y~C~~  217 (238)
                      |++.|.|.-
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999954

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0018  Score=39.27  Aligned_cols=72  Identities=24%  Similarity=0.433  Sum_probs=44.2

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ce--eeE---e-ecC-----CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NK--EII---V-RSN-----PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~--~~~---~-~~~-----~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.- ++  .-.   . ...     +....++....+     -.|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            456889999999999986544  68898732 11  111   0 000     111222222221     26889999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jnhb1          90 DSAVYSCSRGR  100 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecC
Confidence            99999997543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.001  Score=40.81  Aligned_cols=71  Identities=23%  Similarity=0.459  Sum_probs=42.6

Q ss_pred             eecCCCcEEEEEEEcccc----CCeEEEEeCCC-e--eeEeec--C------CCCCcceEEEe-----eceEEEEEeecC
Q psy7941         149 MVPEGGSAKLVCKAKGYP----TPKITWRREDN-K--EIIVRS--N------PPSSQKVFSVE-----SEVLSLTKVTRS  208 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p----~~~~~W~~~~~-~--~~~~~~--~------~~~~~~~~~~~-----~~~l~i~~~~~~  208 (238)
                      .+++|+++.|.|.+.|+.    ...+.|++... +  ......  .      .....++....     ...|.|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            467899999999988743    23688997321 1  111110  0      00011221111     126999999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        91 DsAvYyCAr~~  101 (120)
T d2agjh1          91 DTATYYCARTS  101 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEeeEecC
Confidence            99999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.14  E-value=0.0012  Score=39.91  Aligned_cols=73  Identities=26%  Similarity=0.462  Sum_probs=44.2

Q ss_pred             CceeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--Eeec--C-------CCCCcceEEEe-e----ceEEEEEee
Q psy7941         146 GDMMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IVRS--N-------PPSSQKVFSVE-S----EVLSLTKVT  206 (238)
Q Consensus       146 ~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~~~--~-------~~~~~~~~~~~-~----~~l~i~~~~  206 (238)
                      ....+++|+++.|.|.+.|+...  .+.|++.. ++.+  ....  .       +....+..... .    -.|.+.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            33567889999999999985433  68898732 1111  1110  0       11111222211 1    268888999


Q ss_pred             cCCCeEEEEEee
Q psy7941         207 RSEMGAYQCIAA  218 (238)
Q Consensus       207 ~~d~G~y~C~~~  218 (238)
                      .+|++.|.|.-.
T Consensus        88 ~eDtAvYYCAr~   99 (116)
T d1mjuh1          88 SDDSAVYYCANK   99 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEccc
Confidence            999999999753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=0.0022  Score=39.73  Aligned_cols=72  Identities=19%  Similarity=0.414  Sum_probs=44.4

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-C--eeeEeecC---------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-N--KEIIVRSN---------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~--~~~~~~~~---------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. +  ..-.....         +....++....+     -.|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            457889999999999985433  68898732 1  11111100         111122222221     26889999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|.-..
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.13  E-value=0.0041  Score=37.86  Aligned_cols=72  Identities=21%  Similarity=0.448  Sum_probs=43.9

Q ss_pred             eeecCCCcEEEEEEEccccC--CeEEEEeCC-Ceee--EeecC-----------CCCCcceEEEe-e----ceEEEEEee
Q psy7941         148 MMVPEGGSAKLVCKAKGYPT--PKITWRRED-NKEI--IVRSN-----------PPSSQKVFSVE-S----EVLSLTKVT  206 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~-~~~~--~~~~~-----------~~~~~~~~~~~-~----~~l~i~~~~  206 (238)
                      ..+++|++++|.|.+.|...  -.+.|++.. ++.+  .....           +....++.... +    -.|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            34788999999999988643  378998732 1111  10000           01111222222 1    268889999


Q ss_pred             cCCCeEEEEEeee
Q psy7941         207 RSEMGAYQCIAAN  219 (238)
Q Consensus       207 ~~d~G~y~C~~~n  219 (238)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00021  Score=43.19  Aligned_cols=71  Identities=15%  Similarity=0.218  Sum_probs=38.4

Q ss_pred             ecCCCcEEEEEEEcc-ccC---CeEEEEeCCCeeeEeec-CCC--CCcceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         150 VPEGGSAKLVCKAKG-YPT---PKITWRREDNKEIIVRS-NPP--SSQKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       150 ~~~g~~~~l~C~~~~-~p~---~~~~W~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      +..+..+.|.|.+.| +|.   ..+.|.+ ++....... ...  ..... ....+.|.|..-.......|+|.+.+...
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~-~~~~~~~~~~~~~~~~~~gt-ys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNST-YRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEE-TTEEECCCEECCCEECTTSC-EEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEee-CCeECCCcEECCcEECCCCc-EEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            345678999999988 554   3678888 444332111 100  00111 11222444443333344489999999764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.0011  Score=40.38  Aligned_cols=71  Identities=21%  Similarity=0.406  Sum_probs=42.7

Q ss_pred             ceeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Ee--ecC-------CCCCcceEEE-ee----ceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IV--RSN-------PPSSQKVFSV-ES----EVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~--~~~-------~~~~~~~~~~-~~----~~l~i~~~~~  207 (238)
                      ...+++|+++.|.|.+.|+.  ...+.|++.. ++.+  ..  ...       +....+.... +.    ..|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            34578899999999998854  3368888631 1111  10  000       1111122221 11    2588999999


Q ss_pred             CCCeEEEEEe
Q psy7941         208 SEMGAYQCIA  217 (238)
Q Consensus       208 ~d~G~y~C~~  217 (238)
                      +|++.|.|.-
T Consensus        89 eDtAvYYCAr   98 (117)
T d1mfah1          89 EDSAVYYCTR   98 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEec
Confidence            9999999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.10  E-value=0.002  Score=39.39  Aligned_cols=72  Identities=21%  Similarity=0.430  Sum_probs=44.3

Q ss_pred             ceeecCCCcEEEEEEEccccCC--eEEEEeCCC-e--eeE--ee-cC------CCCCcceEEEee-----ceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K--EII--VR-SN------PPSSQKVFSVES-----EVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~--~~~--~~-~~------~~~~~~~~~~~~-----~~l~i~~~~~  207 (238)
                      ...+++|+++.|.|.+.|....  .+.|++... +  +..  .. ..      .....++....+     -.|.+.+++.
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            3568899999999999986533  688987321 1  111  01 00      011122222221     1588899999


Q ss_pred             CCCeEEEEEee
Q psy7941         208 SEMGAYQCIAA  218 (238)
Q Consensus       208 ~d~G~y~C~~~  218 (238)
                      +|++.|.|...
T Consensus        90 eDtA~YYCAr~  100 (122)
T d1vgeh1          90 EDTAVYYCARD  100 (122)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.00088  Score=40.72  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=42.5

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--EeecC-C--------CCCcceEEEe-----eceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IVRSN-P--------PSSQKVFSVE-----SEVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~~~~-~--------~~~~~~~~~~-----~~~l~i~~~~~~  208 (238)
                      ..+++|++++|.|.+.|+.  ...+.|++.. ++.+  ..... .        ....++....     ...|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            4578899999999998853  3468998732 1111  11100 0        0111221111     125899999999


Q ss_pred             CCeEEEEEe
Q psy7941         209 EMGAYQCIA  217 (238)
Q Consensus       209 d~G~y~C~~  217 (238)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.0011  Score=39.68  Aligned_cols=75  Identities=20%  Similarity=0.337  Sum_probs=43.6

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee-eeEeecCccEEEEEcCCCeE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH-EHVITNNARLSVTHNDANTW  100 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  100 (238)
                      .+.++.|.|.+.+..+.                      .+...+.|++++........ ......++.|+..+      
T Consensus        15 ~~~t~~l~Clv~~f~p~----------------------~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S------   66 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQN----------------------DPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVS------   66 (103)
T ss_dssp             SSSCCEEEEEEEEECTT----------------------CCCCEEEEEESSCEECCCEECCCEECTTSCEEEEE------
T ss_pred             cCCCcEEEEEEEeeECC----------------------CCCEEEEEEECCccccCCEECCcEECCCCCEEEEE------
Confidence            56788999999864322                      11346899998876433221 12223455565554      


Q ss_pred             EEEEcccCcccCeEEEEEEecCCC
Q psy7941         101 TLNIRSVRREDRGYYMCQVNTNPM  124 (238)
Q Consensus       101 ~L~i~~~~~~d~G~Y~C~~~~~~~  124 (238)
                      .|.|..-.-.....|+|.+.+...
T Consensus        67 ~L~v~~~~W~~g~~~tC~V~H~~l   90 (103)
T d1i1ca1          67 ELPIVERDWLNGKTFKCKVNSGAF   90 (103)
T ss_dssp             EEECCHHHHHTTCCEEEEEECSSS
T ss_pred             EEEECHHHhcCCCEEEEEEEeCCC
Confidence            565533222233479999987543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.0021  Score=38.17  Aligned_cols=70  Identities=26%  Similarity=0.404  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEEccccCC--eEEEEeCCC-ee--eEee---c------CCCCCcceEEEe-----eceEEEEEeecCCCeE
Q psy7941         152 EGGSAKLVCKAKGYPTP--KITWRREDN-KE--IIVR---S------NPPSSQKVFSVE-----SEVLSLTKVTRSEMGA  212 (238)
Q Consensus       152 ~g~~~~l~C~~~~~p~~--~~~W~~~~~-~~--~~~~---~------~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~  212 (238)
                      +|++++|.|.+.|....  .+.|++... +.  -...   .      ......+.....     .-.|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            47899999999986543  689987321 11  1100   0      011122222111     1268999999999999


Q ss_pred             EEEEeeeCC
Q psy7941         213 YQCIAANGV  221 (238)
Q Consensus       213 y~C~~~n~~  221 (238)
                      |.|......
T Consensus        81 YYCAr~~~~   89 (103)
T d1oari_          81 YYCARMWYY   89 (103)
T ss_dssp             EEEEEEECS
T ss_pred             EEeEEECCC
Confidence            999865443

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.09  E-value=0.0018  Score=38.31  Aligned_cols=67  Identities=12%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             cCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeee------eeEeecCccEEEEEcC
Q psy7941          23 GRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIH------EHVITNNARLSVTHND   96 (238)
Q Consensus        23 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   96 (238)
                      ...++|.|.+.+.-+..                        ..|.|++++........      ......++.|....  
T Consensus        14 ~~~vtL~C~~~gFyP~~------------------------I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s--   67 (98)
T d1u58a1          14 EGGMRLRCFARDYYPAD------------------------LEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHI--   67 (98)
T ss_dssp             SSCEEEEEEEEEEBSSC------------------------EEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEE--
T ss_pred             CCcEEEEEEEEEEcCCC------------------------CEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEE--
Confidence            45789999998754443                        35999998765432111      11122345555443  


Q ss_pred             CCeEEEEEcccCcccCeEEEEEEecC
Q psy7941          97 ANTWTLNIRSVRREDRGYYMCQVNTN  122 (238)
Q Consensus        97 ~~~~~L~i~~~~~~d~G~Y~C~~~~~  122 (238)
                          .|.+   ...+...|+|.+.+.
T Consensus        68 ----~l~v---~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          68 ----DVYV---DGGLEHVYSCRVKGI   86 (98)
T ss_dssp             ----EEEE---CTTCGGGEEEEEEEG
T ss_pred             ----EEEE---CCCCCCEEEEEEEeC
Confidence                5555   344556799999764

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.06  E-value=0.0012  Score=40.21  Aligned_cols=70  Identities=24%  Similarity=0.433  Sum_probs=42.7

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--EeecC---------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IVRSN---------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~~~~---------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. ++.+  .....         .....++.... .    -.|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            457889999999999886433  68998732 1111  10100         00111221111 1    26889999999


Q ss_pred             CCeEEEEEe
Q psy7941         209 EMGAYQCIA  217 (238)
Q Consensus       209 d~G~y~C~~  217 (238)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.04  E-value=0.00064  Score=40.69  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=41.3

Q ss_pred             eecCCCcEEEEEEEcccc--CCeEEEEeCCC-e--eeEeecC--------CCCCcceEEEee-----ceEEEEEeecCCC
Q psy7941         149 MVPEGGSAKLVCKAKGYP--TPKITWRREDN-K--EIIVRSN--------PPSSQKVFSVES-----EVLSLTKVTRSEM  210 (238)
Q Consensus       149 ~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~-~--~~~~~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~d~  210 (238)
                      .+++|++++|.|.+.|..  ...+.|++... +  +......        +....+.....+     -.|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            367899999999998853  33688987421 1  1111000        111112222211     1689999999999


Q ss_pred             eEEEEEee
Q psy7941         211 GAYQCIAA  218 (238)
Q Consensus       211 G~y~C~~~  218 (238)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.03  E-value=0.00092  Score=40.82  Aligned_cols=72  Identities=22%  Similarity=0.433  Sum_probs=43.5

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--Ee--ecCC---------CCCcceEEEe-----eceEEEEEee
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IV--RSNP---------PSSQKVFSVE-----SEVLSLTKVT  206 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~--~~~~---------~~~~~~~~~~-----~~~l~i~~~~  206 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. ++.+  ..  ....         ....++....     .-.|.+.+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            468899999999999985433  67898732 1111  10  0000         0111111111     1258999999


Q ss_pred             cCCCeEEEEEeee
Q psy7941         207 RSEMGAYQCIAAN  219 (238)
Q Consensus       207 ~~d~G~y~C~~~n  219 (238)
                      .+|++.|.|....
T Consensus        90 ~eDTAvYYCAr~~  102 (121)
T d1nfdf1          90 VDDTAIYYCTRAG  102 (121)
T ss_dssp             GGGCEECEEEEEE
T ss_pred             CCcceEEEEeccC
Confidence            9999999997543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.03  E-value=0.003  Score=38.37  Aligned_cols=72  Identities=21%  Similarity=0.483  Sum_probs=43.6

Q ss_pred             ceeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--E--eec-C------CCCCcceEEE-ee----ceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--I--VRS-N------PPSSQKVFSV-ES----EVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~--~~~-~------~~~~~~~~~~-~~----~~l~i~~~~~  207 (238)
                      ...+++|+++.|.|.+.|+...  .+.|.+.- ++.+  .  ... .      .....+.... +.    ..|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            3567889999999999885433  68888732 1111  1  000 0      1111122111 11    2688889999


Q ss_pred             CCCeEEEEEee
Q psy7941         208 SEMGAYQCIAA  218 (238)
Q Consensus       208 ~d~G~y~C~~~  218 (238)
                      +|++.|.|.-.
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0025  Score=39.00  Aligned_cols=71  Identities=25%  Similarity=0.488  Sum_probs=43.6

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ceee--Ee--e-cC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NKEI--IV--R-SN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~~~--~~--~-~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+.++|.|.+.|+.  ...+.|++.. ++.+  ..  . ..      .....+..... .    -.|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            4578899999999998754  3368998742 1111  11  1 00      00111222211 1    15889999999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|...
T Consensus        90 DtA~YYCAr~   99 (120)
T d1pg7x1          90 DSAVYYCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeec
Confidence            9999999864

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.02  E-value=0.00023  Score=44.10  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             cCCCcEEEEEEEcc-ccC---CeEEEEeCCCeeeEeecCCCCC--cceEEEeeceEEEEEeecCCCeEEEEEeeeCCC
Q psy7941         151 PEGGSAKLVCKAKG-YPT---PKITWRREDNKEIIVRSNPPSS--QKVFSVESEVLSLTKVTRSEMGAYQCIAANGVP  222 (238)
Q Consensus       151 ~~g~~~~l~C~~~~-~p~---~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~n~~g  222 (238)
                      ..+..+.|.|.+.| +|.   ..++|.+ ++............  ..-.....+.|.|..-+......|+|.+.|..-
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~-~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEee-CCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            45678899999988 453   3788999 44433211110000  000011122344333333344589999998653

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.01  E-value=0.0023  Score=39.22  Aligned_cols=71  Identities=27%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCC-Ce--e-eEeec-C-------CCCCcceEEEe-----eceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRRED-NK--E-IIVRS-N-------PPSSQKVFSVE-----SEVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~-~~--~-~~~~~-~-------~~~~~~~~~~~-----~~~l~i~~~~~~  208 (238)
                      ..+++|++++|.|.+.|+.  ...+.|++.. ++  . +.... .       .....+.....     .-.|.|.+++.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            4578899999999998754  3478998742 11  1 11111 0       01111222211     125889999999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.01  E-value=0.0024  Score=39.23  Aligned_cols=71  Identities=21%  Similarity=0.412  Sum_probs=43.7

Q ss_pred             ceeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--E--ee-cC------CCCCcceEEEee-----ceEEEEEeec
Q psy7941         147 DMMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--I--VR-SN------PPSSQKVFSVES-----EVLSLTKVTR  207 (238)
Q Consensus       147 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~--~~-~~------~~~~~~~~~~~~-----~~l~i~~~~~  207 (238)
                      ...+++|+++.|.|.+.|+...  .+.|++.- ++.+  .  .. ..      +....++....+     -.|.+.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            3557889999999999986544  68888732 1111  0  01 10      111122222211     2688999999


Q ss_pred             CCCeEEEEEe
Q psy7941         208 SEMGAYQCIA  217 (238)
Q Consensus       208 ~d~G~y~C~~  217 (238)
                      +|++.|.|.-
T Consensus        88 eDTAvYYCAr   97 (126)
T d1lmka1          88 EDSAVYYCAR   97 (126)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999974

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.01  E-value=0.0021  Score=39.55  Aligned_cols=70  Identities=21%  Similarity=0.417  Sum_probs=43.2

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--EeecC---------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IVRSN---------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~~~~---------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.- ++.+  .....         .....++....+     -.|.+.+++.+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            567889999999999985433  68898732 1111  10000         111222222221     25888999999


Q ss_pred             CCeEEEEEe
Q psy7941         209 EMGAYQCIA  217 (238)
Q Consensus       209 d~G~y~C~~  217 (238)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999974

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.00  E-value=0.0025  Score=39.27  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee-----EeecC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI-----IVRSN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~-----~~~~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|....  .+.|++.. ++.+     .....      +....++.... +    -.|.|.+++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            457899999999999885433  68998732 1111     01010      11111222111 1    25889999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999998653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0006  Score=40.78  Aligned_cols=70  Identities=11%  Similarity=0.190  Sum_probs=42.2

Q ss_pred             ecCCEEEEeEEecCCCceeeeeeeeeeeecCCeEEeccCCCCceEEEEeCCceeeeeeeeeEeecCccEEEEEcCCCeEE
Q psy7941          22 QGRDAIFTCVVNNLGGHRVSSSVTDTHVNTGGSIVFPTDSSAMKVAWIKADTKAVLAIHEHVITNNARLSVTHNDANTWT  101 (238)
Q Consensus        22 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (238)
                      .++++.|.|.+.+..+.                        ...|.|.+++........ .....++.|...+      .
T Consensus        19 ~~~~~tl~Cl~~gf~P~------------------------~i~v~W~~~~~~~~~~~~-~~~~~~g~~s~~S------~   67 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPE------------------------PVTVAWNEGALSSGVLTV-SAVLQSGLYTLSS------N   67 (101)
T ss_dssp             TCSEEEEEEEEEEEBSS------------------------CCEEEEGGGTCCTTEEEC-CCEEETTEEEEEE------E
T ss_pred             CCCeEEEEEEEEEEeCC------------------------CCEEEEecCCCcccceee-eeecCCCCEEEEE------E
Confidence            57899999999874332                        346999876543222111 1122345565544      6


Q ss_pred             EEEcccCcccCeEEEEEEecCC
Q psy7941         102 LNIRSVRREDRGYYMCQVNTNP  123 (238)
Q Consensus       102 L~i~~~~~~d~G~Y~C~~~~~~  123 (238)
                      |.|..-.- +.|.|+|.+.+..
T Consensus        68 L~v~~~~w-~~~~ytC~V~H~~   88 (101)
T d1kcvh2          68 TTVASGTW-PSASVTCLVAHPK   88 (101)
T ss_dssp             EEEETTTT-TTSCCEEEEEEGG
T ss_pred             EEEchhhc-CCCeEEEEEEeCC
Confidence            66654333 4678999997653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.99  E-value=0.0031  Score=38.61  Aligned_cols=72  Identities=22%  Similarity=0.457  Sum_probs=44.0

Q ss_pred             eeecCCCcEEEEEEEccccC--CeEEEEeCC-Ce--eeEeec---C------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPT--PKITWRRED-NK--EIIVRS---N------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~-~~--~~~~~~---~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+..  -.+.|++.. ++  ......   .      .....++.... +    ..|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            45788999999999988543  368898732 11  111110   0      11112222222 1    25889999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.99  E-value=0.0037  Score=38.61  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=44.3

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--Eee---cC------CCCCcceEEEe-e----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--IVR---SN------PPSSQKVFSVE-S----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~~~---~~------~~~~~~~~~~~-~----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. ++.+  ...   ..      +....++.... +    -.|.+.+++.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            457889999999999986433  68898732 1111  110   00      11112222222 1    25888999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.98  E-value=0.0024  Score=39.35  Aligned_cols=73  Identities=18%  Similarity=0.396  Sum_probs=44.5

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ceee--E---e-ecC-----CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NKEI--I---V-RSN-----PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~~~--~---~-~~~-----~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|.+.- ++.+  .   . ...     +....+.....+     -.|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            457889999999999985433  68898632 1111  1   0 000     111122222221     26889999999


Q ss_pred             CCeEEEEEeeeC
Q psy7941         209 EMGAYQCIAANG  220 (238)
Q Consensus       209 d~G~y~C~~~n~  220 (238)
                      |++.|.|.-...
T Consensus        90 DTavYYCAR~~~  101 (127)
T d2fx7h1          90 DTAVYYCAREGT  101 (127)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             cceEEEEeeccc
Confidence            999999986543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.97  E-value=0.0014  Score=39.89  Aligned_cols=72  Identities=22%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             eeecCCCcEEEEEEEccccCC---eEEEEeCC-Ceee--EeecC--------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP---KITWRRED-NKEI--IVRSN--------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~-~~~~--~~~~~--------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...   .+.|++.. ++.+  .....        +....++....+     -.|.+.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            457889999999999997653   47887631 1111  11100        111112222211     25888999999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999997544

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.95  E-value=0.0024  Score=39.35  Aligned_cols=72  Identities=22%  Similarity=0.339  Sum_probs=44.3

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCCC-e---eeE-ee-c------CCCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRREDN-K---EII-VR-S------NPPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~-~---~~~-~~-~------~~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.-. +   -+. .. .      .+....++....+     -.|.+.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            457889999999999986544  578876321 1   110 00 0      0111222222221     26888899999


Q ss_pred             CCeEEEEEeee
Q psy7941         209 EMGAYQCIAAN  219 (238)
Q Consensus       209 d~G~y~C~~~n  219 (238)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (128)
T d2nxyd1          90 DTAVYFCAGVY  100 (128)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEEe
Confidence            99999998654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.94  E-value=0.0039  Score=37.99  Aligned_cols=71  Identities=24%  Similarity=0.435  Sum_probs=43.4

Q ss_pred             eeecCCCcEEEEEEEcccc--CCeEEEEeCCC-e--eeEe--e-cC------CCCCcceEEEee-----ceEEEEEeecC
Q psy7941         148 MMVPEGGSAKLVCKAKGYP--TPKITWRREDN-K--EIIV--R-SN------PPSSQKVFSVES-----EVLSLTKVTRS  208 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~-~--~~~~--~-~~------~~~~~~~~~~~~-----~~l~i~~~~~~  208 (238)
                      ..+++|+++.|.|.+.|+.  ...+.|++... +  ....  . ..      .....++....+     -.|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            4578899999999998854  33688987321 1  1111  1 10      001112222211     25888999999


Q ss_pred             CCeEEEEEee
Q psy7941         209 EMGAYQCIAA  218 (238)
Q Consensus       209 d~G~y~C~~~  218 (238)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999864

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.93  E-value=0.0049  Score=37.38  Aligned_cols=72  Identities=19%  Similarity=0.427  Sum_probs=44.0

Q ss_pred             eeecCCCcEEEEEEEccccCC--eEEEEeCC-Ce--eeEeecC--------CCCCcceEEEe-e----ceEEEEEeecCC
Q psy7941         148 MMVPEGGSAKLVCKAKGYPTP--KITWRRED-NK--EIIVRSN--------PPSSQKVFSVE-S----EVLSLTKVTRSE  209 (238)
Q Consensus       148 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~-~~--~~~~~~~--------~~~~~~~~~~~-~----~~l~i~~~~~~d  209 (238)
                      ..+++|+++.|.|.+.|+...  .+.|++.. ++  .......        +....++.... +    ..|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            347889999999999986533  78898732 11  1111100        11111222222 1    268899999999


Q ss_pred             CeEEEEEeee
Q psy7941         210 MGAYQCIAAN  219 (238)
Q Consensus       210 ~G~y~C~~~n  219 (238)
                      ++.|.|.-..
T Consensus        90 tA~YyCAr~~   99 (118)
T d1lo4h1          90 TAIYYCARGT   99 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEecccC
Confidence            9999997543