Psyllid ID: psy7965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEEHHHccc
Coil and Loop (DISEMBL)
pfadkfgrkpvilAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTpiflmksgkpekaEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNdifksagstldpsiSAIIVGVVQCIVTGlsnsgsdvssiafLPLISVIMFIVMFSlgfgpipwmMVGELFAA
Flexible Loop (DISEMBL)
pfadkfgrkpvILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Low Complexity Region (SEG)
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Disordered region (IsUnstruct)
******GRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELF**
Disordered Region (DISOPRED)
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATEL*******************LFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Disordered Region (DISEMBL)
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Disordered Region (DISPRO)
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIAIGCLTPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
B4J913	929	Facilitated trehalose tra	N/A	N/A	0.996	0.275	0.352	1e-44
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.996	0.296	0.339	4e-44
A5LGM7	504	Facilitated trehalose tra	N/A	N/A	0.984	0.501	0.352	1e-43
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.996	0.281	0.343	2e-43
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.988	0.320	0.351	6e-43
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.996	0.299	0.346	1e-42
Q291H8	868	Facilitated trehalose tra	no	N/A	0.996	0.294	0.336	2e-42
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.996	0.294	0.336	2e-42
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.988	0.491	0.345	2e-42
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.996	0.299	0.339	3e-42

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P  +  GR+  ILA   P+I+SWLLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 531 PLIEYLGRRNTILATAVPFIISWLLIACAVNVPMVLSGRFLAGFCVGIASLSLPVYLGET 590

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIAI--GCL-------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++++A   G L             TP +
Sbjct: 591 VQPEVRGTLGLLPTAFGNIGILLCFIAGTYMDWSMLAFLGGALPVPFLILMFLIPETPRW 650

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ E+A  +L + RG + DV  EL  + +   A ++++AT + +     R+NL+ L
Sbjct: 651 YVSRGREERARKALVWLRGVEADVEPELKGLMRS-QADADRQATHNTMLELLKRSNLKPL 709

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL-------- 214
            +SLGLM FQQ SG+N VIFY+  IFK AGSTLD ++  IIVG V  I T +        
Sbjct: 710 SISLGLMFFQQLSGINAVIFYTVQIFKDAGSTLDGNVCTIIVGTVNFIATFIGILLIDRA 769

Query: 215 --------SN------------------SGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                   SN                  +G DVS++  LPL   +++I+ FSLGFGPIPW
Sbjct: 770 GRKILLYVSNIAMILTLFVLGGFFYCKANGMDVSNVGLLPLCCFVVYILGFSLGFGPIPW 829

Query: 249 MMVGELFAA 257
           +M+GE+  A
Sbjct: 830 LMMGEILPA 838

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila grimshawi (taxid: 7222)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score =  178 bits (451), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           PF +  GR+  ILA   P+I+SWLLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 465 PFIEYLGRRNTILATAVPFIISWLLIACAVNVVMVLCGRFLAGFCVGIASLSLPVYLGET 524

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIAI--GCL-------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++++A   G L             TP +
Sbjct: 525 VQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLIPETPRW 584

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ E+A  +L + RG + DV  EL  + +   A ++++AT + +     R+NL+ L
Sbjct: 585 YVSRGREERARKALVWLRGKEADVEPELKGLMRS-QADADRQATQNTMLELLKRSNLKPL 643

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS------- 215
            +SLGLM FQQ SG+N VIFY+  IF+ AGST+D ++  IIVGVV  + T ++       
Sbjct: 644 SISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFMATFIATVLIDRA 703

Query: 216 ---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                      ++G D S++ +LPL   +++I+ FSLGFGPIPW
Sbjct: 704 GRKILLYVSNVAMILTLFVLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPW 763

Query: 249 MMVGELFAA 257
           +M+GE+  A
Sbjct: 764 LMMGEILPA 772

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 53/306 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           PF +  GRK  ILA   P+I++WLLI FA +I+M+   R ++G   G     +P+++GE 
Sbjct: 106 PFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGET 165

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIA-IGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++ +A IG +              TP +
Sbjct: 166 VQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRW 225

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ E+A  +L++ RG + DV  EL  I K     +E+ A+ + +F    R+NL+ L
Sbjct: 226 FVTRGREERARKALQWLRGKKADVEPELKGIVKS-HCEAERHASQNAIFDLMKRSNLKPL 284

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQ-------------- 208
           +++LGLM FQQ SG+N VIFY+  IFK AGST+D ++  IIVGVV               
Sbjct: 285 LIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVLIDRL 344

Query: 209 ------------CIVTGLS--------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                        ++T L+        NSG+DVS+I +LPL S +++++ FS G GPIPW
Sbjct: 345 GRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPW 404

Query: 249 MMVGEL 254
           +M+GE+
Sbjct: 405 LMLGEI 410

High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Polypedilum vanderplanki (taxid: 319348)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 164/309 (53%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           PF +  GR+  ILA   P+I+SWLLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 513 PFIEYLGRRNTILATAVPFIVSWLLIACAVNVIMVLCGRFLAGFCVGIASLSLPVYLGET 572

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIA-IGCLTPI------FLM------ 106
            +  +RG LG     F  +G+L  +  G    ++++A +G   P+      FL+      
Sbjct: 573 VQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPETPRW 632

Query: 107 --KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
               G+ E+A  +L + RG + DV  EL  + +   A ++++AT + +     R+NL+ L
Sbjct: 633 YVSRGREERARKALVWLRGKEADVEPELKGLMRS-QADADRQATQNKMLELLKRSNLKPL 691

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS------- 215
            +SLGLM FQQ SG+N VIFY+  IF+ AGST+D ++  IIVGVV    T ++       
Sbjct: 692 SISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDGNVCTIIVGVVNFAATFIATILIDRA 751

Query: 216 ---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                      +SG D S++ +LPL   +++I+ FSLGFGPIPW
Sbjct: 752 GRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPW 811

Query: 249 MMVGELFAA 257
           +M+GE+  A
Sbjct: 812 LMMGEILPA 820

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 53/307 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P  +  GRK  ILA   P+I+SWLLI  A ++ M+ V R ++G+  G     +P+++GE 
Sbjct: 395 PMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGET 454

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLG--LSTYTVIAIGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G  L    +  +G                TP +
Sbjct: 455 VQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRW 514

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +   + ++A  +L++ RG + DV  EL  I K    A E+ A+ S +    ++ANL+ L
Sbjct: 515 YVSRNREDRARKALQWLRGRKADVEPELKGISKSHQDA-ERHASSSAMLDLLNKANLKPL 573

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT---------- 212
           ++SLGLM FQQ SG+N VIFY+  IF+SAGST+D  +  IIVGVV  I T          
Sbjct: 574 LISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEKLCTIIVGVVNFIATFIATVLIDRL 633

Query: 213 ------------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                    + N+G DVS I +LPL + ++F+V FSLGFGPIPW
Sbjct: 634 GRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPW 693

Query: 249 MMVGELF 255
           +M+GE+ 
Sbjct: 694 LMMGEIL 700

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 161/309 (52%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P  +  GR+  ILA   P+I+S LLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 458 PLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGET 517

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIA-IGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++++A +G                TP +
Sbjct: 518 VQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRW 577

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ E+A  +L + RG + DV  EL  + +   A ++++AT + +     R NL+ L
Sbjct: 578 FVSRGREERARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNTMLELLKRNNLKPL 636

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL-------- 214
            +SLGLM FQQ SG+N VIFY+  IFK AGST+D +I  IIVGVV  + T +        
Sbjct: 637 SISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDGNICTIIVGVVNFLATFIGIVLIDRA 696

Query: 215 --------SN------------------SGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                   SN                   G DVS++ +LPL   +++I+ FSLGFGPIPW
Sbjct: 697 GRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPIPW 756

Query: 249 MMVGELFAA 257
           +M+GE+  A
Sbjct: 757 LMMGEILPA 765

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  172 bits (437), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 161/309 (52%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           PF +  GR+  ILA   P+I+S LLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 470 PFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVYLGET 529

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIA-IGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++++A +G                TP +
Sbjct: 530 VQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRW 589

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ EKA  +L + RG + DV  EL  + +   A ++++AT + +     R NL+ L
Sbjct: 590 FVSRGREEKARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNKMMELLKRNNLKPL 648

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS------- 215
            +SLGLM FQQ SG+N VIFY+  IFK AGST+D ++  IIVG+V  + T ++       
Sbjct: 649 SISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRA 708

Query: 216 ---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                      + G DVS + +LPL   +++I+ FSLGFGPIPW
Sbjct: 709 GRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPW 768

Query: 249 MMVGELFAA 257
           +M+GE+  +
Sbjct: 769 LMMGEILPS 777

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  172 bits (437), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 161/309 (52%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           PF +  GR+  ILA   P+I+S LLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 471 PFIEYLGRRNTILATAIPFIVSSLLIACAVNVAMVLAGRFLAGFCVGIASLSLPVYLGET 530

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIA-IGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G    ++++A +G                TP +
Sbjct: 531 VQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRW 590

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ EKA  +L + RG + DV  EL  + +   A ++++AT + +     R NL+ L
Sbjct: 591 FVSRGREEKARKALSWLRGKEADVEPELKGLMRS-QADADRQATQNKMMELLKRNNLKPL 649

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS------- 215
            +SLGLM FQQ SG+N VIFY+  IFK AGST+D ++  IIVG+V  + T ++       
Sbjct: 650 SISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRA 709

Query: 216 ---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                      + G DVS + +LPL   +++I+ FSLGFGPIPW
Sbjct: 710 GRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPW 769

Query: 249 MMVGELFAA 257
           +M+GE+  +
Sbjct: 770 LMMGEILPS 778

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 159/307 (51%), Gaps = 53/307 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P  +  GRK  ILA   P+I+SWLLI  A ++ M+ V R ++G   G     +P+++GE 
Sbjct: 119 PLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGET 178

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLG--LSTYTVIAIGCL--------------TPIF 104
            +  +RG LG     F  +G+L  +  G  +    +  +G                TP +
Sbjct: 179 VQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRW 238

Query: 105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
            +  G+ ++A  +L++ RG + DV  EL  I K    A E+ A+ S +     + NL+ L
Sbjct: 239 YVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDA-ERHASQSAMLDLLKKTNLKPL 297

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS------- 215
           ++SLGLM FQQ SG+N VIFY+  IF+ AGST+D ++  IIVGVV  I T ++       
Sbjct: 298 LISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDENLCTIIVGVVNFIATFIATLLIDRL 357

Query: 216 ---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                      N+G DVS I +LPL S ++F++ FSLGFGPIPW
Sbjct: 358 GRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPW 417

Query: 249 MMVGELF 255
           +M+GE+ 
Sbjct: 418 LMMGEIL 424

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 53/309 (17%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P  +  GR+  ILA   P+I+S LLI  A N+ M+   RF+AG   G     +P+++GE 
Sbjct: 458 PLIEYMGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGET 517

Query: 61  AESSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIA-IGCLTPI------FLM------ 106
            +  +RG LG     F  +G+L  +  G    ++++A +G   P+      FL+      
Sbjct: 518 VQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRW 577

Query: 107 --KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFS--SRANLRGL 162
               G+ E+A  +L + RG + DV  EL  + +   A ++++AT + +     R NL+ L
Sbjct: 578 YVSRGREERARKALTWLRGKEADVEPELKGLMRS-QADADRQATQNTMLELLKRNNLKPL 636

Query: 163 IVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL-------- 214
            +SLGLM FQQFSG+N VIFY+  IFK AGST+D ++  IIVGVV  + T +        
Sbjct: 637 SISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFVATFIGILLIDRA 696

Query: 215 --------------------------SNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPW 248
                                        G DVS + +LPL   +++I+ FS+GFGPIPW
Sbjct: 697 GRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGFSVGFGPIPW 756

Query: 249 MMVGELFAA 257
           +M+GE+  A
Sbjct: 757 LMMGEILPA 765

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
357619298	500	hypothetical protein KGM_13187 [Danaus p	0.988	0.508	0.447	5e-65
195454052	507	GK14443 [Drosophila willistoni] gi|19417	0.980	0.497	0.419	3e-61
157126364	488	sugar transporter [Aedes aegypti]	0.984	0.518	0.417	2e-60
195391242	508	GJ22894 [Drosophila virilis] gi|19415235	0.980	0.496	0.419	4e-60
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.988	0.531	0.430	3e-59
195109120	508	GI23234 [Drosophila mojavensis] gi|19391	0.980	0.496	0.412	3e-59
170054020	479	sugar transporter [Culex quinquefasciatu	0.984	0.528	0.414	9e-59
390178340	518	GA26484, isoform B [Drosophila pseudoobs	0.980	0.486	0.409	4e-58
195144544	512	GL24034 [Drosophila persimilis] gi|19845	0.980	0.492	0.409	5e-58
195036444	509	GH18927 [Drosophila grimshawi] gi|193893	0.980	0.495	0.402	8e-58

>gi|357619298|gb|EHJ71927.1| hypothetical protein KGM_13187 [Danaus plexippus]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 136/304 (44%), Positives = 186/304 (61%), Gaps = 50/304 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           A++FGR+P IL    P++++WLL +FA    ML  ARF AG+GTGG+C   PM+IGE+AE
Sbjct: 120 AERFGRRPTILMLSLPFLINWLLTIFANGSGMLIAARFFAGLGTGGICVCAPMYIGEVAE 179

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLGLSTY-----------TVIAIGCL-----TPIFLM 106
           +SIRG+LGSFFQ+FLT+G+L+ + +G  T+            V+ I        TP +L+
Sbjct: 180 TSIRGSLGSFFQLFLTVGILFTFVVGGWTHWRTLSIISAVFPVLLIAVFWWMPETPQYLL 239

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
              +   AE SLR+ RG   D++ EL  +QK++D AS + A    + + RA L  LI SL
Sbjct: 240 GKNRRRDAERSLRWLRGPLADLSGELEEMQKDVDTASRQSAGILSMVTQRAPLMALICSL 299

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQ------------------ 208
           GLM FQQFSG+N VIFY+N+IF+SAGS + P I+ IIVGVVQ                  
Sbjct: 300 GLMFFQQFSGINAVIFYTNNIFQSAGSNIPPVIATIIVGVVQTIATYISSLLIEKAGRRI 359

Query: 209 -----CIVTG-----------LSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                CI+ G           L  SG++V +  +LPL+ +++FIV FSLGFGPIPWMM+ 
Sbjct: 360 LLLQSCIIMGICLIVLGTYFKLQESGANVGTFGWLPLVCLVLFIVSFSLGFGPIPWMMMS 419

Query: 253 ELFA 256
           ELFA
Sbjct: 420 ELFA 423

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454052|ref|XP_002074064.1| GK14443 [Drosophila willistoni] gi|194170149|gb|EDW85050.1| GK14443 [Drosophila willistoni]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 187/303 (61%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   +A   P+IL+WL I+FAQ++  L++ RF+ G+ TG  C + PM+I EIAE
Sbjct: 129 ADAIGRRYTAMAMDVPFILAWLSIIFAQSVGWLYLGRFLIGIATGSFCVVAPMYISEIAE 188

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L+VY +G + ++T ++  CL               TP++L+
Sbjct: 189 TSIRGTLGTLFQLLLTIGILFVYAVGSMVSWTTLSTLCLIVPILLLVGMFFLPETPVYLL 248

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+   A +SL++  G   D  + +  IQ ++D A    A+F DLFS+R +L+GLI+S+
Sbjct: 249 KKGRRADAALSLKWLWGRFCDSRSAIQIIQNDLDQAG-ADASFLDLFSNRGSLKGLIISM 307

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM+FQQFSG+N VIFY+  IF SAGSTLD S  +I+VGVVQ I+T              
Sbjct: 308 LLMLFQQFSGINAVIFYTVQIFDSAGSTLDASSCSIVVGVVQVIMTLTSSLLIERAGRKI 367

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                + + G DVS+I +LPL+ V+++IV FS+G+GPIPW+M+G
Sbjct: 368 LLLFSSTVMTICLAILGAYFNIKDGGKDVSAIGWLPLLCVVLYIVTFSVGYGPIPWLMMG 427

Query: 253 ELF 255
           ELF
Sbjct: 428 ELF 430

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126364|ref|XP_001660877.1| sugar transporter [Aedes aegypti]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 51/304 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           A+K GRK   ++   PY+ SW LI+FA    ML+  RF+ G+ TG  C + PMFI EIAE
Sbjct: 110 AEKIGRKYTTMSLALPYLASWALIIFASGAEMLYAGRFVIGIATGASCVVAPMFISEIAE 169

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRGALG+FFQ+FLT+G+L+VY +G  +++T +++ C                +P +L+
Sbjct: 170 TSIRGALGAFFQLFLTVGILFVYAVGPYTSWTTLSVLCAIFPVLLIVAMFIVPESPTYLV 229

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+   A  +L+++ G   +    +  IQ ++DA  + +A  SDLF+   N   L ++L
Sbjct: 230 KQGRRSDAAAALKWFWGPNCNTQNAVETIQADLDAV-KGEAKVSDLFTKATNRNALFIAL 288

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IF+SAGST+DP+I  I+VGVVQ ++T              
Sbjct: 289 LLMFFQQFSGINAVIFYTVPIFQSAGSTMDPAICGIVVGVVQVLMTFVSSVLIDKAGRRI 348

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                L N  +DVS I +LPL SV++FI+ FSLGFGPIPWMM+G
Sbjct: 349 LLLQSSFIMGSCLVVLGVYFKLQNDKADVSGIGWLPLASVVLFIISFSLGFGPIPWMMMG 408

Query: 253 ELFA 256
           EL A
Sbjct: 409 ELCA 412

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391242|ref|XP_002054272.1| GJ22894 [Drosophila virilis] gi|194152358|gb|EDW67792.1| GJ22894 [Drosophila virilis]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 183/303 (60%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   LA   P+IL+WL I FA++   L+  RF+ G+ TG  C + PM+I EIAE
Sbjct: 131 ADTIGRRYTALAMDVPFILAWLSISFAKSAGWLYFGRFLIGISTGSFCVVAPMYISEIAE 190

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L++Y +G + +++ ++I CL               TP++L+
Sbjct: 191 TSIRGTLGTLFQLLLTVGILFIYIVGAMVSWSTLSIMCLFVPIALFVGMLMLPETPVYLL 250

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+   A +SL++  G   D  + +  IQ ++D AS   ATF DLF++R    GLI+S+
Sbjct: 251 KKGRRADAALSLKWLWGRYCDSRSAIQVIQNDLDQAS-ADATFLDLFTNRGARNGLIISI 309

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IFKSAGS+LD SI +IIVGVVQ I+T              
Sbjct: 310 LLMFFQQFSGINAVIFYTESIFKSAGSSLDASICSIIVGVVQVIMTLTSSLLIERAGRKI 369

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                +  SG DV+ I +LPL+ +++FI+ FS+G+GPIPW+M+G
Sbjct: 370 LLLFSSTVMTICLAILGAYFDMKESGKDVTHIGWLPLLCMVLFIITFSVGYGPIPWLMMG 429

Query: 253 ELF 255
           ELF
Sbjct: 430 ELF 432

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 180/304 (59%), Gaps = 50/304 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           ++ FGRK  +LA   P ++SW + L   ++ ML+ AR I G   G    I PM+IGEIAE
Sbjct: 90  SETFGRKLPLLALGIPSVISWAIKLQGTSLEMLYAARLIGGFTAGAASGITPMYIGEIAE 149

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGC---------------LTPIFLM 106
           +S+RG LG+FFQ+ LT+G+LYVY +G L +Y+ + + C                +P +L+
Sbjct: 150 NSVRGTLGTFFQLMLTVGILYVYVVGTLFSYSSLQVLCGIVPVVFMLLFVKAPDSPTYLL 209

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+   AE +LR  RG  YD+  EL  IQ E+D AS +K +F+     +A+L+ L ++L
Sbjct: 210 KKGRRHDAEKALRLLRGPSYDIHAELNNIQYELDKASRQKVSFAKAIMKKASLKSLFIAL 269

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSI---------------SAIIV------- 204
           GLM+FQQFSGVN VIFYS  IF++AGSTLDPSI               SA++V       
Sbjct: 270 GLMLFQQFSGVNAVIFYSVSIFQAAGSTLDPSICTVIVGIIQVIVTYFSAVLVDKAGRRI 329

Query: 205 -----GVVQCIVTG-------LSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                  V  +  G       L   G DVS+I  +PL+SV +FIV+FSLGFGPIPW+M G
Sbjct: 330 LLLISSSVMALCLGCLGYYFHLQQKGEDVSNIGMIPLVSVCVFIVVFSLGFGPIPWLMTG 389

Query: 253 ELFA 256
           ELF+
Sbjct: 390 ELFS 393

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109120|ref|XP_001999138.1| GI23234 [Drosophila mojavensis] gi|193915732|gb|EDW14599.1| GI23234 [Drosophila mojavensis]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/303 (41%), Positives = 183/303 (60%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   +A   P+IL+WL I FA++   L+  RF+ G+ TG  C + PM+I EIAE
Sbjct: 131 ADAIGRRYTAMAMDVPFILAWLSISFAKSAGWLYFGRFLIGISTGSFCVVAPMYISEIAE 190

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L++Y +G + ++T ++I CL               TP++L+
Sbjct: 191 TSIRGTLGTLFQLLLTMGILFIYVVGSMVSWTTLSILCLFVPIALLVGMVMLPETPVYLL 250

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+  +A +SL++  G   D  + +  IQ ++D  +   A+F DLF++R    GLI+S+
Sbjct: 251 KKGRRAEAALSLKWLWGRYCDSRSAIQVIQNDLD-QTGADASFLDLFTNRGARNGLIISI 309

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IFKSAGS+LD SI +IIVGVVQ I+T              
Sbjct: 310 LLMFFQQFSGINAVIFYTESIFKSAGSSLDASICSIIVGVVQVIMTLTSSLLIERAGRKM 369

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                +  SG DVS I +LPL+ +++FI+ FS+G+GPIPW+M+G
Sbjct: 370 LLLFSSTVMTICLAMLGAYFDMKESGKDVSHIGWLPLLCMVLFIITFSVGYGPIPWLMMG 429

Query: 253 ELF 255
           ELF
Sbjct: 430 ELF 432

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054020|ref|XP_001862938.1| sugar transporter [Culex quinquefasciatus] gi|167874408|gb|EDS37791.1| sugar transporter [Culex quinquefasciatus]

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 181/304 (59%), Gaps = 51/304 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           A+K GRK   ++   PY+LSW LI+FA    ML+  RF+ G+ TG  C + PM+I E AE
Sbjct: 102 AEKIGRKYTTMSLALPYLLSWALIIFANGAGMLYAGRFLIGISTGASCVVAPMYISEFAE 161

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
            SIRGALG+FFQ+FLT+G+L+VY +G   ++ ++++ C                +P +L+
Sbjct: 162 ISIRGALGAFFQLFLTVGILFVYAIGPYVSWVLLSVMCAVFPALLIVAMFIVPESPTYLV 221

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K+G+  +A V+L+++ G   +    + AIQ ++DA  + +A  SDLF+   N   L ++L
Sbjct: 222 KTGRRSEAAVALKWFWGPNCNTQNAVEAIQSDLDAV-KGEAKVSDLFTKAVNRNALFIAL 280

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IF+SAGST+DP+I  I+VGVVQ ++T              
Sbjct: 281 LLMFFQQFSGINAVIFYTVPIFQSAGSTMDPAICGIVVGVVQVLMTFVSSVLIDKAGRRI 340

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                L    +DVS I +LPL SV++FI+ FSLGFGPIPWMM+G
Sbjct: 341 LLLQSSFIMGSCLVVLGVYFKLQADKADVSGIGWLPLASVVLFIISFSLGFGPIPWMMMG 400

Query: 253 ELFA 256
           EL A
Sbjct: 401 ELCA 404

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178340|ref|XP_003736628.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859411|gb|EIM52701.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 182/303 (60%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   +    P+IL+WL I+FA +   L+  RF+ G+ TG  C + PM+I EIAE
Sbjct: 141 ADAIGRRYTAMVMNVPFILAWLSIIFANSAGWLYFGRFLIGISTGSFCVVAPMYISEIAE 200

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L+VY +G + ++T ++  CL               TP++L+
Sbjct: 201 TSIRGTLGTLFQLLLTVGILFVYLVGSMVSWTTLSTLCLFVPIFLFLGLLILPETPVYLL 260

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+  +A +SL++  G   D  + +  IQ ++D A+   A   DLFS+R    GL++S+
Sbjct: 261 KKGQRAEAALSLKWLWGRYCDSRSAIQVIQNDLDQAA-ADAGILDLFSNRGARNGLVISI 319

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IF+SAGSTLD S+ +IIVGVVQ I+T              
Sbjct: 320 LLMFFQQFSGINAVIFYTVPIFQSAGSTLDASVCSIIVGVVQVIMTLTASLLIDRAGRKI 379

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                + +SG DVSSI +LPL+ V++F++ FS+G+GPIPW+M+G
Sbjct: 380 LLLFSSTVMSICLAILGAYFDMKDSGKDVSSIGWLPLLCVVLFMITFSVGYGPIPWLMMG 439

Query: 253 ELF 255
           ELF
Sbjct: 440 ELF 442

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144544|ref|XP_002013256.1| GL24034 [Drosophila persimilis] gi|198452802|ref|XP_002137541.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura] gi|194102199|gb|EDW24242.1| GL24034 [Drosophila persimilis] gi|198132083|gb|EDY68099.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 182/303 (60%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   +    P+IL+WL I+FA +   L+  RF+ G+ TG  C + PM+I EIAE
Sbjct: 135 ADAIGRRYTAMVMNVPFILAWLSIIFANSAGWLYFGRFLIGISTGSFCVVAPMYISEIAE 194

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L+VY +G + ++T ++  CL               TP++L+
Sbjct: 195 TSIRGTLGTLFQLLLTVGILFVYLVGSMVSWTTLSTLCLFVPIFLFLGLLILPETPVYLL 254

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+  +A +SL++  G   D  + +  IQ ++D A+   A   DLFS+R    GL++S+
Sbjct: 255 KKGQRAEAALSLKWLWGRYCDSRSAIQVIQNDLDQAA-ADAGILDLFSNRGARNGLVISI 313

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IF+SAGSTLD S+ +IIVGVVQ I+T              
Sbjct: 314 LLMFFQQFSGINAVIFYTVPIFQSAGSTLDASVCSIIVGVVQVIMTLTASLLIDRAGRKI 373

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                + +SG DVSSI +LPL+ V++F++ FS+G+GPIPW+M+G
Sbjct: 374 LLLFSSTVMSICLAILGAYFDMKDSGKDVSSIGWLPLLCVVLFMITFSVGYGPIPWLMMG 433

Query: 253 ELF 255
           ELF
Sbjct: 434 ELF 436

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036444|ref|XP_001989680.1| GH18927 [Drosophila grimshawi] gi|193893876|gb|EDV92742.1| GH18927 [Drosophila grimshawi]

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 181/303 (59%), Gaps = 51/303 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           AD  GR+   +    P+IL+WL I FA++   L+  RF+ G+ TG  C + PM+I EIAE
Sbjct: 132 ADAIGRRYTAMLMDVPFILAWLSISFAKSAGWLYFGRFLIGISTGSFCVVAPMYISEIAE 191

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
           +SIRG LG+ FQ+ LT+G+L++Y +G L +++ +++ CL               TP++L+
Sbjct: 192 TSIRGTLGTLFQLLLTVGILFIYVVGALVSWSALSMMCLVVPIVLFVGMIMLPETPVYLL 251

Query: 107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
           K G+   A +SL++  G   D  + +  IQ ++D A    A+F DLF++R    GLI+S+
Sbjct: 252 KKGRRADAALSLKWLWGRYCDSRSAIQVIQNDLDQAG-TDASFLDLFTNRGARNGLIISM 310

Query: 167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVT-------------- 212
            LM FQQFSG+N VIFY+  IFKSAGS+L+ S+ +IIVGVVQ I+T              
Sbjct: 311 MLMFFQQFSGINAVIFYTESIFKSAGSSLNASVCSIIVGVVQVIMTLTSSLLIERAGRKI 370

Query: 213 --------------------GLSNSGSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG 252
                                +  SG DVS I +LPL+ +++FI+ FS+G+GPIPW+M+G
Sbjct: 371 LLLFSSTVMTICLAILGAYFDMKESGKDVSHIGWLPLLCMVLFIITFSVGYGPIPWLMMG 430

Query: 253 ELF 255
           ELF
Sbjct: 431 ELF 433

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.926	0.474	0.381	1.9e-44
FB|FBgn0028560	444	sut4 "sugar transporter 4" [Dr	0.957	0.554	0.407	2.5e-42
FB|FBgn0037387	491	CG1213 [Drosophila melanogaste	0.552	0.289	0.375	3e-36
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.898	0.428	0.331	5.1e-34
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.813	0.444	0.323	9e-33
UNIPROTKB|F1NDA6	482	SLC2A8 "Uncharacterized protei	0.914	0.487	0.287	3.2e-32
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.638	0.352	0.360	6.3e-31
UNIPROTKB|Q9NY64	477	SLC2A8 "Solute carrier family	0.929	0.501	0.290	1.2e-29
ZFIN|ZDB-GENE-030829-25	498	slc2a8 "solute carrier family	0.910	0.469	0.296	2.2e-29
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.894	0.471	0.331	2.9e-29

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 98/257 (38%), Positives = 164/257 (63%)

Query:     3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
             AD+ GR+   +    P+IL+W+ + FA ++  L++ RF+ G+ TG  C + PM+I EIAE
Sbjct:   127 ADRIGRRYTAMVMDIPFILAWITLSFANSVGWLYLGRFLIGIATGSFCVVAPMYISEIAE 186

Query:    63 SSIRGALGSFFQMFLTLGVLYVYCLG-LSTYTVIAIGCL---------------TPIFLM 106
             +SIRG+LG+ FQ+ LT+G+L++Y +G L ++  +++ CL               TP++L+
Sbjct:   187 TSIRGSLGTLFQLLLTIGILFIYVVGALVSWKTLSLLCLIIPILLLVGLFIVPETPVYLL 246

Query:   107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
             K+GK  +A  +L++  G   + +  + AIQ ++D      A+  DLFS+RA+  G+++S+
Sbjct:   247 KNGKRSEANRALKWLWGDYCNTSNAIQAIQNDLDQTGVD-ASVKDLFSNRASRNGMVISV 305

Query:   167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAF 226
              LM+FQQFSG+N VIF+ N+IF+S+ STL+P++  I+VGVVQ I+T  S+   + +    
Sbjct:   306 LLMVFQQFSGINAVIFFMNEIFESS-STLNPNVCTIVVGVVQVIMTLASSLLIEKAGRKI 364

Query:   227 LPLIS-VIMFIVMFSLG 242
             L + S  IM + +  LG
Sbjct:   365 LLIFSSTIMTVCLAMLG 381

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 110/270 (40%), Positives = 153/270 (56%)

Query:     5 KFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS 64
             K GRK  +L    P+ + WLLIL A +I ML + RF+ G   G  C   PM++ EIA+  
Sbjct:    73 KIGRKTTMLILLPPFFIGWLLILLASHIAMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQ 132

Query:    65 IRGALGSFFQMFLTLGVLYVYCLG--LST-YTVIAIGCL-------------TPIFLMKS 108
              RG +G FFQ+ +  G+LY + +G  + T Y  IA   L             +PIFL + 
Sbjct:   133 YRGTMGCFFQLLIVFGILYAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQK 192

Query:   109 GKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEK-KATFSDLFSSRANLRGLIVSLG 167
             GK EKAE SL++ RG   DV+ EL    KE+ A  +K KA+   +   R  L+GL +S+G
Sbjct:   193 GKAEKAEKSLKFLRGKDADVSGEL----KEMSAEGQKEKASVGKILCRRITLKGLFLSIG 248

Query:   168 LMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFL 227
             LM+FQQ +G+N +IFYS  IF++AGSTL+P IS IIVG+VQ I T +S    +      L
Sbjct:   249 LMLFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVIEKVGRKIL 308

Query:   228 PLISVIMF---IVMFSLGFGPIPWMMVGEL 254
              L+S  M     ++ +L FG +    VG L
Sbjct:   309 LLVSACMMGISTLIMALYFGMLMKSGVGWL 338

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
 Identities = 54/144 (37%), Positives = 79/144 (54%)

Query:   101 TPIFLMKSGKPEKAEVSLRYYRGAQYD-VATELAAIQKEIDAASEKKATFSDLFSSRANL 159
             +P F    G+  +A  SL++ RG   + V  E+A IQ  ++ A   K T  DLF +  N 
Sbjct:   225 SPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNR 284

Query:   160 RGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGS 219
             R L +  GL+ FQQ SG+N V+F S  IF SA + LDP+I+ II+G VQ   + L+   +
Sbjct:   285 RALFICAGLISFQQLSGINVVLFNSQSIFASANTGLDPAIATIIIGCVQVGSSALTPLVA 344

Query:   220 D-VSSIAFLPLISVIMFIVMFSLG 242
             D +     L   S +M I + +LG
Sbjct:   345 DRLGRKVMLLTSSSVMSIGLAALG 368

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 370 (135.3 bits), Expect = 5.1e-34, P = 5.1e-34
 Identities = 82/247 (33%), Positives = 130/247 (52%)

Query:     7 GRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR 66
             GRK  +L    P+IL W ++++A N+ ML+ +RFI G+  G  C   PM+ GEIA+  IR
Sbjct:   153 GRKWTMLFLVLPFILGWTMLIWAVNVSMLYASRFILGIAGGAFCVTAPMYTGEIAQKEIR 212

Query:    67 GALGSFFQMFLTLGVLYVYCLGLST---YTVIAIGCL-------------TPIFLMKSGK 110
             G LGSFFQ+ +T+G+L+VY +G      +  I  G L             +P +L+   +
Sbjct:   213 GTLGSFFQLMITIGILFVYAVGAGVKIFWLSIICGILPLIFGAIFFFMPESPTYLVSKDR 272

Query:   111 PEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMI 170
              E A  S+++ RG +YD   ELA +++        K       +     + L +S+GLM 
Sbjct:   273 SENAIKSIQWLRGKEYDYEPELAELRETDRETKANKVNVWAALNRPVTRKALAISMGLMF 332

Query:   171 FQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLI 230
             FQQ  G+N VIFY++ IF  A + ++   + I++G++Q + T +S    D      L L 
Sbjct:   333 FQQVCGINAVIFYASRIFLEANTGIEAEWATILIGIMQVVATFVSTLVVDKLGRRILLLA 392

Query:   231 SVIMFIV 237
             S I   +
Sbjct:   393 SGISMAI 399

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 9.0e-33, Sum P(2) = 9.0e-33
 Identities = 74/229 (32%), Positives = 124/229 (54%)

Query:     3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
             +D  GRK  +        + WL+I  A+    L   RF+ G G G L  ++P+FI EI+ 
Sbjct:    96 SDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISP 155

Query:    63 SSIRGALGSFFQMFLTLGVLYVYCLG--LSTYTVIAIG---CL-----------TPIFLM 106
               +RGAL +  Q+F+ +G+  ++ +G  ++  T+   G   C+           +P +L 
Sbjct:   156 RKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLE 215

Query:   107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASE-KKATFSDLFSSRANLRGLIVS 165
               G+    E++L+  RG Q ++  E   IQ+ + + +   KAT  DL   + N+R +IV 
Sbjct:   216 MVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKK-NIRFVIVG 274

Query:   166 LGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL 214
             +GLM FQQF G+N VIFY+  IF SAG++  P++ +I+  + Q ++T L
Sbjct:   275 VGLMFFQQFVGINGVIFYAQQIFVSAGAS--PTLGSILYSIEQVVLTAL 321

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1NDA6 SLC2A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 284 (105.0 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
 Identities = 74/257 (28%), Positives = 133/257 (51%)

Query:     4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES 63
             DK GRK  ++    P++  +++I+ AQN++ML+  R + G+ +G    ++P++I EI+ +
Sbjct:    92 DKIGRKLSLMLCSIPFVSGYIVIISAQNVWMLYFGRILTGLASGITSLVVPVYISEISHT 151

Query:    64 SIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIAIGCL---------------TPIFLMK 107
              +RG LGSF Q+ +  G+L  Y  GL+  +  +A+ C                TP FL+ 
Sbjct:   152 DVRGMLGSFVQLMVVTGILGAYIAGLTLKWHWLAVLCSFPPCVMLLFMLFMPETPRFLLD 211

Query:   108 SGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLG 167
               K  +A  +L++ RG   D   E   I+  ++   E  + F   F + +  R L++ + 
Sbjct:   212 QKKRAEAIAALQFLRGPYVDHEWECRQIEANVE--EEGLSLFE--FKNPSIYRPLLIGVI 267

Query:   168 LMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFL 227
             LM  QQ +G+N V+FY+  IF+ A    D  +++++VG +Q   T ++    D +    L
Sbjct:   268 LMFLQQVTGINAVMFYAETIFEDANFQ-DSRMASVVVGFIQVCFTAVAALIIDKTGRKVL 326

Query:   228 PLIS-VIMFIVMFSLGF 243
               +S +IM +     GF
Sbjct:   327 LYVSGMIMALSTALFGF 343

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
 Identities = 67/186 (36%), Positives = 101/186 (54%)

Query:     2 FA-DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
             FA D  GR+P +LA   PY++ W+L+LFA+N+ ML+  RFI G+  G  C   PM+  EI
Sbjct:    72 FAIDWIGRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAFCVTAPMYCTEI 131

Query:    61 AESSIRGALGSFFQMFLTLGVLYVYCLG--LSTYTV-IAIGCL-------------TPIF 104
               +++RG +GSFFQ+ +  GVLY Y +G  L   T+ I    L             +P++
Sbjct:   132 TATALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMPESPVY 191

Query:   105 LMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIV 164
             L   G+ + A  +L++ RG   D+  EL    KEI   S+K+     + +  ++LR  IV
Sbjct:   192 LAMKGRNDDAAKALQWLRGKDADIDDEL----KEILEESQKQIDMPQV-NILSSLRRPIV 246

Query:   165 SLGLMI 170
               GL I
Sbjct:   247 LKGLGI 252

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q9NY64 SLC2A8 "Solute carrier family 2, facilitated glucose transporter member 8" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 72/248 (29%), Positives = 123/248 (49%)

Query:     4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES 63
             D+ GRK  +L    P++  + +I  AQ+++ML   R + G+  G    + P++I EIA  
Sbjct:    92 DRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYP 151

Query:    64 SIRGALGSFFQMFLTLGVLYVYCLG--LSTYTVIAIGCLTP--IFLMKSGKPEKAEVSLR 119
             ++RG LGS  Q+ + +G+L  Y  G  L    +  +GC+ P  + L+    PE     L 
Sbjct:   152 AVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSLMLLLMCFMPETPRFLLT 211

Query:   120 YYRGAQYDVATEL--AAIQKEIDAASEKKATFS-DLFSSRANLRGLIVSLGLMIFQQFSG 176
              +R  +   A      + Q   D     + +F   L       +  I+ + LM FQQ SG
Sbjct:   212 QHRRQEAMAALRFLWGSEQGWEDPPIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSG 271

Query:   177 VNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAFLPLISVIMFI 236
             VN V+FY+  IF+ A    D S+++++VGV+Q + T ++    D +    L ++S ++ +
Sbjct:   272 VNAVMFYAETIFEEA-KFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMV 330

Query:   237 VMFSLGFG 244
                S  FG
Sbjct:   331 FSTS-AFG 337

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-030829-25 slc2a8 "solute carrier family 2 (facilitated glucose transporter), member 8" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
 Identities = 77/260 (29%), Positives = 135/260 (51%)

Query:     4 DKFGRKPVILAFC-FPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
             ++ GRK + L FC  P+I  +  I+ AQN +M +V R + G+ +G    ++P++I E+A 
Sbjct:   102 ERIGRK-LSLMFCAIPFIFGFTTIIAAQNHWMFYVGRVLTGLASGVTSLVVPLYISEMAH 160

Query:    63 SSIRGALGSFFQMFLTLGVLYVYCLGL----------STY--TVIAIG-CL---TPIFLM 106
               +RG LGS  Q+ + +G++  Y  GL          S+   T++ +  C    TP FL+
Sbjct:   161 ERVRGTLGSCVQLMVVIGIMGAYVTGLFLDWRWLAVASSIPPTLMLLSMCFMPETPRFLL 220

Query:   107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFS--DLFSSRANLRGLIV 164
               GK  +AE +LR+ RG       E A I+   DA   ++ +FS  DL       + L +
Sbjct:   221 CQGKRREAEDALRFLRGPDAPAEWECARIE---DAYKNEEQSFSLGDL-KDPGVYKPLGI 276

Query:   165 SLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSI 224
              + +M+ QQF+G+N ++FY+  IF+ A       ++ +IV   Q + T ++    D +  
Sbjct:   277 GVMMMLLQQFTGINAIMFYAETIFEQAHFK-SSDVATVIVAATQVVFTAIAALIMDKAGR 335

Query:   225 AFLPLISVIMFIVMFSLGFG 244
               L ++S ++  V  ++ FG
Sbjct:   336 KVLLILSGVVMCVSEAV-FG 354

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 82/247 (33%), Positives = 135/247 (54%)

Query:     3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
             A+  GRK  ++    P I+ WL I FA++   L++ R + G G G +   +P++I EIA 
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 169

Query:    63 SSIRGALGSFFQMFLTLGVLYVYCLGLST-YTVIAI-GCL--------------TPIFLM 106
              ++RGALGS  Q+ +T+G++  Y LGL   + ++A+ G L              +P +L 
Sbjct:   170 QTMRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLA 229

Query:   107 KSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSL 166
             K G  +  E SL+  RG + D+  E+  I++ + ++S++ A        R     L+V +
Sbjct:   230 KMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGI 289

Query:   167 GLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLSNSGSDVSSIAF 226
             GL+  QQ  G+N V+FYS+ IF+SAG T   +++   VGVVQ + TG++    D +    
Sbjct:   290 GLLALQQLGGINGVLFYSSTIFESAGVT-SSNVATFGVGVVQVVATGIATWLVDKAGRRL 348

Query:   227 LPLISVI 233
             L +IS I
Sbjct:   349 LLMISSI 355

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	257
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-33
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-27
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-20
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-06
PRK11652	394	PRK11652, emrD, multidrug resistance protein D; Pr	4e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
PRK15402	406	PRK15402, PRK15402, multidrug efflux system transl	1e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	3e-04
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	7e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	0.001
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  124 bits (314), Expect = 4e-33
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 59/312 (18%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIG 58
              D+FGRK  +L     +++  LL  FA+  + YML V R I G+G GG+  ++PM+I 
Sbjct: 68  KLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYIS 127

Query: 59  EIAESSIRGALGSFFQMFLTLGVLYVYCLGLSTYTVIA-------------------IGC 99
           EIA   +RGALGS +Q+ +T G+L    +GL                          IG 
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGL 187

Query: 100 L----TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAA-SEKKATFSDLFS 154
           L    +P +L+  GK E+A   L   RG   DV  E+   +  ++ +   +KA++ +LF 
Sbjct: 188 LFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFR 246

Query: 155 SRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL 214
            +   + L++ + L IFQQ +G+N + +YS  IF++ G + D  +  IIVGVV  + T +
Sbjct: 247 GKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFI 305

Query: 215 SNSGSDV-------------------------------SSIAFLPLISVIMFIVMFSLGF 243
           +    D                                     + ++ +++FI  F+LG+
Sbjct: 306 AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGW 365

Query: 244 GPIPWMMVGELF 255
           GP+PW++V ELF
Sbjct: 366 GPVPWVIVSELF 377

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  109 bits (274), Expect = 2e-27
 Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 67/321 (20%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLIL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFI 57
             +D+FGRK  +L     +++  +L+    FA ++ ML V R + G+G G   A++PM++
Sbjct: 93  WLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYL 152

Query: 58  GEIAESSIRGALGSFFQMFLTLGVLYVYCLGLST------------------YTVIAIGC 99
            EIA  ++RGAL S +Q+ +T G+L  Y  G                        +    
Sbjct: 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG 212

Query: 100 L-----TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASE-----KKATF 149
           L     +P +L+  G+ E+A  SL   RG       EL    + ID          + ++
Sbjct: 213 LFFLPESPRWLVGKGRVEEARKSLARLRG-TSGEDKELLDELELIDIKRSIEKRSVQPSW 271

Query: 150 SDLFSSRANLRG-LIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVV 207
             LFSS   +R  L + + L  FQQF+G+N +++YS  IF++AG ST    + +IIVG V
Sbjct: 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331

Query: 208 QCIVT---------------------------------GLSNSGSDVSSIAFLPLISVIM 234
               T                                 G S       S   + ++ +++
Sbjct: 332 NFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391

Query: 235 FIVMFSLGFGPIPWMMVGELF 255
           FI  F++G+GP+PW++V E+F
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIF 412

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 74/322 (22%)

Query: 2   FADKFGRKPVILAFCFPYILSWL------LILFAQN------IYMLFVARFIAGVGTGGL 49
            +++FGR+  +      + +S L          +        +    + R I G+G G  
Sbjct: 78  CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137

Query: 50  CAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL-------GLSTYTV-------I 95
             + PM+I EIA + IRG L SF Q  +  G L VY +       G +++          
Sbjct: 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF 197

Query: 96  AIGCL--------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDA 141
           A   +              TP +LM  GK E+AE  LR   G        L  I+    +
Sbjct: 198 ASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIK---HS 253

Query: 142 ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPS-IS 200
               + T   L      +  +++ + L +FQQF G+N V++Y+ +IFK+ G++ D + + 
Sbjct: 254 LDHGRKTGGKLLMFGVGV--IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311

Query: 201 AIIVGVVQCIVTGLSNSGSD---------------------------VSSIAFLPLISVI 233
            IIVGV+    T L+    D                             +   + L+S++
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371

Query: 234 MFIVMFSLGFGPIPWMMVGELF 255
            ++  F++ +GP+ W+++ E+F
Sbjct: 372 FYVAAFAMSWGPVCWVLLSEIF 393

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 32/192 (16%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE 62
           +D+FGRK V+L       +S +L  F+ N  +  V R + G+G GG+     +   E   
Sbjct: 151 SDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLP 210

Query: 63  SSIRGALGSFFQMFLTLGVLYVYCLGLSTY------------------TVIAIGCL--TP 102
              R  +G+  Q+F +LG++    L L  Y                    +    +  +P
Sbjct: 211 KKQRAIVGTLIQVFFSLGLVL---LPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP 267

Query: 103 IFLMKSGKPEKAEVSLRYYRGAQYD---VATELAAIQKEIDAASEK-KATFSDLFSSRAN 158
            +L+  G+ E+A   L+  R A+ +   +  E+ ++  E D +S K + +F DLF +  N
Sbjct: 268 RWLISQGRIEEALKILQ--RIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTP-N 324

Query: 159 LRGLIVSLGLMI 170
           LR    +L LM+
Sbjct: 325 LR--KTTLCLMM 334

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 27/82 (32%), Positives = 39/82 (47%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
             +D+FGR+ V+L     + L  LL+ FA ++++L V RF+ G+G G L       I E 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW 115

Query: 61  AESSIRGALGSFFQMFLTLGVL 82
                RG     F     LG L
Sbjct: 116 FPPKERGRALGLFSAGFGLGAL 137

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTG 47
           P +D+ GR+PVIL     +IL  L+ LFA ++ +L  A  I G+GTG
Sbjct: 65  PLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111

Length = 394

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
           P AD+ GR+ V+L     + +  LL   A N+  L + RF+AG+G GGL   +   + E 
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 61  AESSIRGALGSFFQMFLTLGVL 82
           A    RG           +G  
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAA 155

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 37/82 (45%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
             +D+FGR+ V+L     + L  LL+LFA ++++L V R + G+G G L       I + 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADW 113

Query: 61  AESSIRGALGSFFQMFLTLGVL 82
                RG           LG  
Sbjct: 114 FPPEERGRALGLLSAGFGLGAA 135

Length = 346

>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAI 52
           P +D+ GR+PV+LA    +IL+ L IL AQ+I    + RF+ G+   GLC I
Sbjct: 70  PLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGI---GLCFI 118

Length = 406

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVG 45
           P +D++GR+PV+L   F + LS L +  + NI  L V RF+   G
Sbjct: 62  PLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 37/82 (45%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEI 60
              D+FGRKPV+L   F ++LS  +   + NI +L +ARF+ G G           I +I
Sbjct: 20  LLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI 79

Query: 61  AESSIRGALGSFFQMFLTLGVL 82
                RG         + LG L
Sbjct: 80  YPPEERGVALGLMSAGIALGPL 101

Length = 141

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 3   ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGG 48
           ADKFGRKP+++     Y +   L   A  + ML ++RFI G+G  G
Sbjct: 77  ADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAG 122

Length = 426

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVG 45
           P +D++GRKPV+LA    + L  L +L+ ++   L V RF+  VG
Sbjct: 63  PLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107

Length = 401

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAII 53
               +  R+ ++L     +I+S LL   A +  +L +AR +AG+  G   +I 
Sbjct: 70  LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIA 122

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG0569|consensus	485		100.0
KOG0254|consensus	513		99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.89
KOG0255|consensus	521		99.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.88
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.86
PRK10642	490	proline/glycine betaine transporter; Provisional	99.85
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.83
PRK09952	438	shikimate transporter; Provisional	99.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.82
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.81
KOG0253|consensus	528		99.81
KOG2532|consensus	466		99.81
PRK12307	426	putative sialic acid transporter; Provisional	99.8
PRK15075	434	citrate-proton symporter; Provisional	99.8
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
KOG1330|consensus	493		99.78
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.77
PRK11663	434	regulatory protein UhpC; Provisional	99.77
TIGR00891	405	2A0112 putative sialic acid transporter.	99.77
PRK03545	390	putative arabinose transporter; Provisional	99.75
TIGR00895	398	2A0115 benzoate transport.	99.75
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.74
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.74
TIGR00900	365	2A0121 H+ Antiporter protein.	99.74
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.74
PRK09705	393	cynX putative cyanate transporter; Provisional	99.73
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.73
KOG2533|consensus	495		99.72
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.71
TIGR00805	633	oat sodium-independent organic anion transporter.	99.71
KOG0252|consensus	538		99.71
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.69
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.67
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.67
PLN00028	476	nitrate transmembrane transporter; Provisional	99.65
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.64
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.64
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.64
PRK10091	382	MFS transport protein AraJ; Provisional	99.64
PRK03893	496	putative sialic acid transporter; Provisional	99.63
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.62
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.62
PRK03699	394	putative transporter; Provisional	99.61
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.61
PRK11043	401	putative transporter; Provisional	99.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.59
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.58
PRK03633	381	putative MFS family transporter protein; Provision	99.58
TIGR00901	356	2A0125 AmpG-related permease.	99.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
PRK10133	438	L-fucose transporter; Provisional	99.56
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.55
PRK12382	392	putative transporter; Provisional	99.53
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.53
PRK10504	471	putative transporter; Provisional	99.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.5
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.5
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
PRK10054	395	putative transporter; Provisional	99.47
KOG3764|consensus	464		99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
PRK11010	491	ampG muropeptide transporter; Validated	99.43
KOG2615|consensus	451		99.43
KOG2504|consensus	509		99.4
PRK11902	402	ampG muropeptide transporter; Reviewed	99.38
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.36
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.34
PTZ00207	591	hypothetical protein; Provisional	99.33
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.32
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.3
PRK15011	393	sugar efflux transporter B; Provisional	99.29
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.28
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.28
PRK10642	490	proline/glycine betaine transporter; Provisional	99.24
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.24
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.24
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.22
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.13
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.1
PRK09528	420	lacY galactoside permease; Reviewed	99.09
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.05
PRK05122	399	major facilitator superfamily transporter; Provisi	99.01
KOG3626|consensus	735		99.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.99
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.89
PRK09874	408	drug efflux system protein MdtG; Provisional	98.87
PRK09528	420	lacY galactoside permease; Reviewed	98.86
PRK12382	392	putative transporter; Provisional	98.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.82
PF13347	428	MFS_2: MFS/sugar transport protein	98.76
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.72
PRK15011	393	sugar efflux transporter B; Provisional	98.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.64
PRK09669	444	putative symporter YagG; Provisional	98.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.57
TIGR00891	405	2A0112 putative sialic acid transporter.	98.55
TIGR00900	365	2A0121 H+ Antiporter protein.	98.53
TIGR00898	505	2A0119 cation transport protein.	98.52
PRK03633	381	putative MFS family transporter protein; Provision	98.5
PRK03893	496	putative sialic acid transporter; Provisional	98.5
PRK10489	417	enterobactin exporter EntS; Provisional	98.49
COG2211	467	MelB Na+/melibiose symporter and related transport	98.49
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.48
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.48
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.47
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.46
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.44
KOG0253|consensus	528		98.44
TIGR00895	398	2A0115 benzoate transport.	98.43
KOG2325|consensus	488		98.41
PRK03545	390	putative arabinose transporter; Provisional	98.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.39
PRK09952	438	shikimate transporter; Provisional	98.38
PRK10429	473	melibiose:sodium symporter; Provisional	98.38
KOG2563|consensus	480		98.37
KOG4686|consensus	459		98.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.33
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.3
TIGR00901	356	2A0125 AmpG-related permease.	98.28
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.28
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.25
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.24
COG0477	338	ProP Permeases of the major facilitator superfamil	98.23
TIGR00893	399	2A0114 d-galactonate transporter.	98.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.17
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.15
PRK10504	471	putative transporter; Provisional	98.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.13
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.1
PRK11462	460	putative transporter; Provisional	98.1
PRK09848	448	glucuronide transporter; Provisional	98.08
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.08
PRK10054	395	putative transporter; Provisional	98.08
PRK03699	394	putative transporter; Provisional	98.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.07
KOG2816|consensus	463		98.06
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.06
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.05
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.03
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.02
PLN00028	476	nitrate transmembrane transporter; Provisional	98.0
PRK12307	426	putative sialic acid transporter; Provisional	97.99
PRK09705	393	cynX putative cyanate transporter; Provisional	97.95
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.95
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.95
PF13347	428	MFS_2: MFS/sugar transport protein	97.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.92
PRK15075	434	citrate-proton symporter; Provisional	97.9
PRK10429	473	melibiose:sodium symporter; Provisional	97.9
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.88
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.83
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.81
KOG0569|consensus	485		97.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.8
PRK11010	491	ampG muropeptide transporter; Validated	97.74
PRK09848	448	glucuronide transporter; Provisional	97.73
PRK10091	382	MFS transport protein AraJ; Provisional	97.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.68
PRK11663	434	regulatory protein UhpC; Provisional	97.66
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.65
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.63
PRK09669	444	putative symporter YagG; Provisional	97.62
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.62
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.56
PRK11902	402	ampG muropeptide transporter; Reviewed	97.53
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.5
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.48
KOG2504|consensus	509		97.45
COG2211	467	MelB Na+/melibiose symporter and related transport	97.39
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.33
PRK11462	460	putative transporter; Provisional	97.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.23
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.2
KOG3762|consensus	618		97.2
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.18
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.13
PRK11043	401	putative transporter; Provisional	97.12
KOG0252|consensus	538		97.08
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.07
PRK10133	438	L-fucose transporter; Provisional	97.07
KOG0254|consensus	513		97.07
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.06
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.0
KOG3764|consensus	464		96.98
KOG0255|consensus	521		96.97
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.85
KOG3098|consensus	461		96.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.82
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.72
KOG0637|consensus	498		96.6
KOG4686|consensus	459		96.58
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.58
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.49
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.03
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.73
KOG3810|consensus	433		95.52
KOG2816|consensus	463		95.0
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	94.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.63
KOG3574|consensus	510		94.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.07
PTZ00207	591	hypothetical protein; Provisional	93.98
KOG2615|consensus	451		93.92
KOG3098|consensus	461		93.8
KOG3880|consensus	409		93.62
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.36
KOG4332|consensus	454		92.23
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.33
PRK15403	413	multidrug efflux system protein MdtM; Provisional	91.16
KOG1237|consensus	571		86.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	86.42
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	85.96
KOG2532|consensus	466		83.94
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.43
KOG2533|consensus	495		82.9

>KOG0569|consensus

Probab=100.00  E-value=7e-32  Score=219.50  Aligned_cols=257  Identities=31%  Similarity=0.572  Sum_probs=212.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +++||+|||..+.++.++..++.+++.++   +++..++++|++.|+..|......+.|+.|..|++.||......+.+.
T Consensus        82 ~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~  161 (485)
T KOG0569|consen   82 LLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGV  161 (485)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHH
Confidence            36899999999999999998888887774   679999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh-------hHHHHHhhcC---------------ChHHHHh-cCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965          78 TLGVLYVYCLGLS-------TYTVIAIGCL---------------TPIFLMK-SGKPEKAEVSLRYYRGAQYDVATELAA  134 (257)
Q Consensus        78 ~~G~~~~~~~~~~-------~Wr~~~~~~~---------------~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (257)
                      .+|.+++..++..       .|++.+.+..               +|+||+. +++.++|++.++++++++++.++..+.
T Consensus       162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~  241 (485)
T KOG0569|consen  162 VIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM  241 (485)
T ss_pred             HHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH
Confidence            9999999877765       6998876665               9999998 899999999999999876543332222


Q ss_pred             HH--HHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC-CCCChhhHHHHHHHhhhhh
Q psy7965         135 IQ--KEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVVQCIV  211 (257)
Q Consensus       135 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  211 (257)
                      .+  ++.+.+++++.+++++++++.+++...+.+.+...++++|.+++.+|...++.+.| ....+..++...+.++++.
T Consensus       242 ~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~  321 (485)
T KOG0569|consen  242 LREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS  321 (485)
T ss_pred             HHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            22  22222233667899999999999999999999999999999999999999999998 3444677888888888888


Q ss_pred             hhcc-------------------------------ccCCCc-cccchHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965         212 TGLS-------------------------------NSGSDV-SSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA  257 (257)
Q Consensus       212 ~~~~-------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  257 (257)
                      ++++                               ...... ....+..+++.+++...|++|.+|++|.+.+|++|+
T Consensus       322 t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~  399 (485)
T KOG0569|consen  322 TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ  399 (485)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence            8887                               011111 223344567888899999999999999999999996

>KOG0254|consensus

Probab=99.96  E-value=2.2e-27  Score=200.26  Aligned_cols=256  Identities=35%  Similarity=0.663  Sum_probs=209.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++|++|||++++++.+...++.+++++++|+..++++|++.|+|.|......+.|++|+.|++.||...+..+....+|
T Consensus       111 ~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~G  190 (513)
T KOG0254|consen  111 RLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIG  190 (513)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh------hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhC-CccchHHHHHHHHHH
Q psy7965          81 VLYVYCLGLS------TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRG-AQYDVATELAAIQKE  138 (257)
Q Consensus        81 ~~~~~~~~~~------~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  138 (257)
                      .+++..++..      +||..+.+..               +|+|+..+++.+++.+.+.++++ .+.+.+.+.++.+.+
T Consensus       191 i~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~  270 (513)
T KOG0254|consen  191 ILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK  270 (513)
T ss_pred             HHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999777766      3997765544               99999999999999999999988 344444554444411


Q ss_pred             HH-Hh-h-hhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         139 ID-AA-S-EKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       139 ~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      .. +. . +.+..+.++++ |..+++...++.+..++++++.+.+.+|.+.+++..|.+.+....+.+.++.++++++++
T Consensus       271 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~  349 (513)
T KOG0254|consen  271 LLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVA  349 (513)
T ss_pred             HHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            11 11 1 11123566666 568889999999999999999999999999999998855444677777777777776666


Q ss_pred             --------------------------------ccCC---CccccchHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965         216 --------------------------------NSGS---DVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA  257 (257)
Q Consensus       216 --------------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  257 (257)
                                                      ....   ......+..+++.+++...++.++++++|.+.+|++|.
T Consensus       350 ~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~  426 (513)
T KOG0254|consen  350 TYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL  426 (513)
T ss_pred             HHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence                                            0011   23455677888889999999999999999999999994

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.94  E-value=1.5e-30  Score=216.79  Aligned_cols=255  Identities=36%  Similarity=0.678  Sum_probs=195.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ---NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +++||+|||+.++++.++..+++++.++++   |++.+.++|++.|++.|...+....++.|..|+++|++..++.+.++
T Consensus        68 ~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~  147 (451)
T PF00083_consen   68 FLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW  147 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh-----h---HHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965          78 TLGVLYVYCLGLS-----T---YTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAA  134 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~---Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (257)
                      .+|.+++..++..     +   ||+.+.+..               +|+|+..++|.+|+.+.+++.++++.+ ++|.++
T Consensus       148 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~  226 (451)
T PF00083_consen  148 ALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEE  226 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc-cccccc
Confidence            9999888877654     4   999876665               999999999999999988886554222 222222


Q ss_pred             HHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhc
Q psy7965         135 IQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGL  214 (257)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                      ..++.++.++++.++++++++++.++++...+.+...+++++.+...+|.+.++++.+.+.+ ...+.+.++..+++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~  305 (451)
T PF00083_consen  227 IKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLL  305 (451)
T ss_pred             cccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            22222222223367888998876677888888888888888888888899988887763333 45555556666655555


Q ss_pred             c-------------------------ccC---CCcccc----chHHHHHHHHHHHHHhhccccccceeeccccCC
Q psy7965         215 S-------------------------NSG---SDVSSI----AFLPLISVIMFIVMFSLGFGPIPWMMVGELFAA  257 (257)
Q Consensus       215 ~-------------------------~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  257 (257)
                      +                         ...   ......    ....+.+..++..+++.++++..|.+++|+||+
T Consensus       306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt  380 (451)
T PF00083_consen  306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT  380 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence            5                         111   111111    333444555566778888999999999999996

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.90  E-value=1.4e-23  Score=177.15  Aligned_cols=188  Identities=21%  Similarity=0.235  Sum_probs=131.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ   74 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~   74 (257)
                      +++||+|||+++.++.++..++.++.+++++      ++.++++|++.|++.|...+....+++|++|+++|++++++.+
T Consensus        78 ~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~  157 (502)
T TIGR00887        78 WLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF  157 (502)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence            3689999999999999999999999888765      7899999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhhh----------------------------hhHHHHHhhcC---------------ChHHHHhcCCh
Q psy7965          75 MFLTLGVLYVYCLGL----------------------------STYTVIAIGCL---------------TPIFLMKSGKP  111 (257)
Q Consensus        75 ~~~~~G~~~~~~~~~----------------------------~~Wr~~~~~~~---------------~~~~l~~~~~~  111 (257)
                      ....+|.++++.++.                            ++||+.+.+.+               +|+|+..+++.
T Consensus       158 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~  237 (502)
T TIGR00887       158 AMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD  237 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcc
Confidence            999998887776542                            15999886544               89999888776


Q ss_pred             H-HHHHHHHHHhCCccc-hHHHHHHHHHHHHHhhhhhhhHHhhhcCCc---hhHHHHHHHHHHHHhhcccceeehhchHH
Q psy7965         112 E-KAEVSLRYYRGAQYD-VATELAAIQKEIDAASEKKATFSDLFSSRA---NLRGLIVSLGLMIFQQFSGVNTVIFYSND  186 (257)
Q Consensus       112 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (257)
                      + ++.+.+.+..+.+.+ ..+|.++.++   +++..+.+++++++++.   .++.++.....++...+ .++....|.|.
T Consensus       238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~  313 (502)
T TIGR00887       238 VEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKV  313 (502)
T ss_pred             hHHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHH
Confidence            4 455555555432211 1111111111   11112235777776431   22323322223333322 24567778999


Q ss_pred             HHHhcC
Q psy7965         187 IFKSAG  192 (257)
Q Consensus       187 ~~~~~~  192 (257)
                      ++++.|
T Consensus       314 i~~~~G  319 (502)
T TIGR00887       314 ILSAIG  319 (502)
T ss_pred             HHHHHc
Confidence            998776

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=3e-23  Score=175.39  Aligned_cols=208  Identities=21%  Similarity=0.325  Sum_probs=147.2

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++++.++.++++++.++++|++.+++.|++.|++.+...+....++.|++|+++|+.+.++.+.+..+|
T Consensus       149 ~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  228 (505)
T TIGR00898       149 YLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG  228 (505)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh--hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccch-HHHHHHHH-HHHHH
Q psy7965          81 VLYVYCLGLS--TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDV-ATELAAIQ-KEIDA  141 (257)
Q Consensus        81 ~~~~~~~~~~--~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~  141 (257)
                      .++++.++..  +||+.+++.+               +|+|+..+++.+++.+.+++..+.+... .++..+.+ ++.+.
T Consensus       229 ~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (505)
T TIGR00898       229 LVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLS  308 (505)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhh
Confidence            9999999877  8999887665               6778888888888877776655432211 11111111 11111


Q ss_pred             hhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         142 ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ++.++.++++++++|+.++..+.....++..... ++....+.+    ..  +.+......+.++..+++.++.
T Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~--~~~~~~~~~~~~~~~i~~~~~~  375 (505)
T TIGR00898       309 SSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS-YYGLVLDLG----NL--GGNIYLDLFISGLVELPAKLIT  375 (505)
T ss_pred             hccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH-HHHHhcccc----cc--CCChHHHHHHHHHHHHHHHHHH
Confidence            1122347789999986666555544444332221 222222222    22  2344555556666666665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.89  E-value=4.3e-23  Score=178.10  Aligned_cols=188  Identities=22%  Similarity=0.354  Sum_probs=145.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++++.++.++++++++++++++.++++|++.|++.|+..+....++.|++|+++|++..++.+.++.+|
T Consensus       224 ~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG  303 (742)
T TIGR01299       224 GLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG  303 (742)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh------------------hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccc
Q psy7965          81 VLYVYCLGLS------------------TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYD  127 (257)
Q Consensus        81 ~~~~~~~~~~------------------~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~  127 (257)
                      .++++.++..                  +||+.+++.+               +|+|+..+++.+++.+.++++++.+..
T Consensus       304 ~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~  383 (742)
T TIGR01299       304 GIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMR  383 (742)
T ss_pred             HHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            9888765421                  5898776654               899999999999999999888765421


Q ss_pred             ----hHHHH--HHHHHHH------HHhhhh------------------hhhHHhhhcCCchhHHHHHHHHHHHHhhcccc
Q psy7965         128 ----VATEL--AAIQKEI------DAASEK------------------KATFSDLFSSRANLRGLIVSLGLMIFQQFSGV  177 (257)
Q Consensus       128 ----~~~~~--~~~~~~~------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (257)
                          ..+..  ++.+...      +.++..                  ..+++++++.+ +++++++.+++++...+. +
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~-y  461 (742)
T TIGR01299       384 AKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSFG-Y  461 (742)
T ss_pred             CcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHH-H
Confidence                11110  0111000      000000                  01355666665 788888888888777764 8


Q ss_pred             eeehhchHHHHHh
Q psy7965         178 NTVIFYSNDIFKS  190 (257)
Q Consensus       178 ~~~~~~~~~~~~~  190 (257)
                      +.+..|.|.++++
T Consensus       462 ygl~~w~P~~~~~  474 (742)
T TIGR01299       462 YGLSVWFPDMIKH  474 (742)
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999988654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255|consensus

Probab=99.89  E-value=6.1e-22  Score=167.96  Aligned_cols=208  Identities=21%  Similarity=0.263  Sum_probs=148.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++++.++..++.+..++++|++.+++.|++.|++.++...+...+++|++++++|+.++.+....+..|
T Consensus       140 ~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~  219 (521)
T KOG0255|consen  140 PLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGG  219 (521)
T ss_pred             ehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999944555555


Q ss_pred             HHHHHHhhhh--hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCc---cchHHHHHHH---HH
Q psy7965          81 VLYVYCLGLS--TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQ---YDVATELAAI---QK  137 (257)
Q Consensus        81 ~~~~~~~~~~--~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~  137 (257)
                      .+..+..++.  +||+.+++..               +|+|+..+++.+++.+.+++..+.+   .+..++.+..   ++
T Consensus       220 ~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~  299 (521)
T KOG0255|consen  220 LMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP  299 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhH
Confidence            5555555555  8999887765               9999999999999999888876532   2222221111   11


Q ss_pred             HHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         138 EIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ......+++..+.++++.|+.+++++.....++...      ..++.-.+. ..+.+.+.+....+.+....++....
T Consensus       300 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~~~-~~~lg~~~~~~~~~~~~~~~p~~~~~  370 (521)
T KOG0255|consen  300 LKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLSLN-VSGLGGNIYLNFTLSGLVELPAYFRN  370 (521)
T ss_pred             hhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhhhh-hhhcCchHHHHHHHHHHHHhhHHHHH
Confidence            111112234568899999877777777777664322      333322221 11234455555555555555554444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.88  E-value=1.2e-21  Score=164.65  Aligned_cols=251  Identities=29%  Similarity=0.515  Sum_probs=151.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGA   68 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~   68 (257)
                      +++||+|||++++.+.++..++.+..+++            +++..++++|+++|++.|...+....+++|++|+++|++
T Consensus        77 ~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~  156 (479)
T PRK10077         77 YCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGK  156 (479)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhH
Confidence            36899999999999999999998887763            235678999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHH
Q psy7965          69 LGSFFQMFLTLGVLYVYCLGL-------------STYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRY  120 (257)
Q Consensus        69 ~~~~~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~  120 (257)
                      ++++.+.+..+|.++++.++.             .+||+.|++.+               +|.++..+++.+++.+..++
T Consensus       157 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~  236 (479)
T PRK10077        157 LVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK  236 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence            999999999999988876643             27999988765               33343333444444333333


Q ss_pred             HhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCC-Chhh
Q psy7965         121 YRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTL-DPSI  199 (257)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  199 (257)
                      ..+.++ .+.+.++.++..++   +....+..+..  ........+....+++..+.+...++.|.++++.|.+. ....
T Consensus       237 ~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~  310 (479)
T PRK10077        237 IMGNTL-ATQALQEIKHSLDH---GRKTGGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL  310 (479)
T ss_pred             HcCChh-HHHHHHHHHHHHHH---hhhhhhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH
Confidence            322211 11111111111110   00001111111  11122223333444555556677788898888776332 2344


Q ss_pred             HHHHHHHhhhhhhhccc-------------------------c--CCCccccchHHHHHHHHHHHHHhhccccccceeec
Q psy7965         200 SAIIVGVVQCIVTGLSN-------------------------S--GSDVSSIAFLPLISVIMFIVMFSLGFGPIPWMMVG  252 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~-------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (257)
                      .....++..+++.++..                         .  .............+++.+..+++.++++..+.+++
T Consensus       311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            44455555555554440                         0  00001111122233344445555566677889999


Q ss_pred             cccCC
Q psy7965         253 ELFAA  257 (257)
Q Consensus       253 e~~P~  257 (257)
                      |.+|+
T Consensus       391 e~~p~  395 (479)
T PRK10077        391 EIFPN  395 (479)
T ss_pred             hhCCh
Confidence            99984

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.86  E-value=3.3e-20  Score=155.48  Aligned_cols=215  Identities=32%  Similarity=0.554  Sum_probs=136.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ---NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +++||+|||++++.+.++..++.++..+.+   +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+.
T Consensus        93 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  172 (481)
T TIGR00879        93 WLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI  172 (481)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence            368999999999999999999999986643   45689999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhh---hh-----hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHH
Q psy7965          78 TLGVLYVYCLG---LS-----TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAA  134 (257)
Q Consensus        78 ~~G~~~~~~~~---~~-----~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (257)
                      .+|.++++.++   ..     +||+.|++.+               .|.++..+++.+++.+..++..+.+++..+..++
T Consensus       173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (481)
T TIGR00879       173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDE  252 (481)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHH
Confidence            99999999998   33     8999887754               2233333333333333333332222111111110


Q ss_pred             H---HHHHH-HhhhhhhhHHhhhcCCc-hhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCC-ChhhHHHHHHHhh
Q psy7965         135 I---QKEID-AASEKKATFSDLFSSRA-NLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTL-DPSISAIIVGVVQ  208 (257)
Q Consensus       135 ~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  208 (257)
                      .   ....+ +.+..+..+.+.++..+ ..++......+..+......+.+.++.|.++++.|.+. ..........+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  332 (481)
T TIGR00879       253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVN  332 (481)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            0   00000 00111122344444321 23444444555555555556777888898888776322 2334444455555


Q ss_pred             hhhhhcc
Q psy7965         209 CIVTGLS  215 (257)
Q Consensus       209 ~~~~~~~  215 (257)
                      +++.++.
T Consensus       333 ~~~~~~~  339 (481)
T TIGR00879       333 FAFTFVA  339 (481)
T ss_pred             HHHHHHH
Confidence            5555544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.85  E-value=4.5e-21  Score=161.38  Aligned_cols=100  Identities=18%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYM--------LFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||+++.++.++++++++++++++|+..        ++++|+++|++.|..++....+++|++|+++||++.++
T Consensus        79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~  158 (490)
T PRK10642         79 MLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSW  158 (490)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHH
Confidence            4789999999999999999999999999999874        89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhh-------------hhhHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLG-------------LSTYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~-------------~~~Wr~~~~~~~  100 (257)
                      .+.+..+|..+++.+.             .++||+.|++.+
T Consensus       159 ~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~  199 (490)
T PRK10642        159 LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIAL  199 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHH
Confidence            9988888877766432             128999998865

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.5e-21  Score=153.64  Aligned_cols=203  Identities=11%  Similarity=0.052  Sum_probs=145.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||.+.|..+.+++++.++.+++++++++...+.+..++.|..+|.-.|.+...++.|+|+++||+..++++.+.++|.
T Consensus        87 ~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGG  166 (448)
T COG2271          87 LSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGG  166 (448)
T ss_pred             hcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh--hh-----hHHHHHhhcC-------ChHHHHhcCChHHH-HHHHHHHhCCccchHHHHHHHHHHHHHh--hh
Q psy7965          82 LYVYCLG--LS-----TYTVIAIGCL-------TPIFLMKSGKPEKA-EVSLRYYRGAQYDVATELAAIQKEIDAA--SE  144 (257)
Q Consensus        82 ~~~~~~~--~~-----~Wr~~~~~~~-------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  144 (257)
                      .+.+.+.  ..     +||..|++.+       ...+...+++|++. ....++.++++.+..      +++.+.+  ..
T Consensus       167 al~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~------~~~~~~~~ls~  240 (448)
T COG2271         167 ALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY------EEEKENEGLTA  240 (448)
T ss_pred             chHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh------hhhccCCCccH
Confidence            8888777  33     8999999988       33444556665532 111122221111110      0000000  01


Q ss_pred             hhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC--CCCChhhHHHHHHHhhhhhhhcc
Q psy7965         145 KKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG--STLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      .+.-++.+++||..|.     +++........-+++..|.|.|+.+..  +..++.....++-..+++|++++
T Consensus       241 ~~i~~~YVL~Nk~iW~-----la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~  308 (448)
T COG2271         241 WQIFVKYVLKNKLIWL-----LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLA  308 (448)
T ss_pred             HHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            1122344566763332     222222222237889999999999874  34456777778888888888887

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.83  E-value=2.7e-20  Score=154.43  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||+++..+.++++++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.++
T Consensus        85 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~  164 (432)
T PRK10406         85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF  164 (432)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence            368999999999999999999999999988764        699999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhh-------------hhhHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLG-------------LSTYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~-------------~~~Wr~~~~~~~  100 (257)
                      .+.+...|.++++.+.             .++||+.|++.+
T Consensus       165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~  205 (432)
T PRK10406        165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGA  205 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            8888888877766542             238999998866

>PRK09952 shikimate transporter; Provisional

Probab=99.82  E-value=3.8e-20  Score=153.69  Aligned_cols=102  Identities=20%  Similarity=0.200  Sum_probs=91.2

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||+++.++.++++++++++++++|+.        .++++|+++|++.|..++....++.|++|+++|++..+.
T Consensus        86 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~  165 (438)
T PRK09952         86 HFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSG  165 (438)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHH
Confidence            368999999999999999999999999999987        588999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcCCh
Q psy7965          73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCLTP  102 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~~~  102 (257)
                      .+.+..+|.+++..+..             ++||+.|++.+.+
T Consensus       166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~  208 (438)
T PRK09952        166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVL  208 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence            99999999888754431             3899999887743

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.4e-19  Score=143.92  Aligned_cols=187  Identities=19%  Similarity=0.255  Sum_probs=139.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+.||+.++..+.++.++++++++++||+.++++|++.|+..|..++....+.+|..|+++|++++++...+.+++.
T Consensus        71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~  150 (394)
T COG2814          71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT  150 (394)
T ss_pred             HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcCC---hHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhh
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCLT---PIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLF  153 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (257)
                      .+|..++.+     |||..|++.+.   ...+.          ....+.+++.+            +..+.+..+..+.+
T Consensus       151 v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~----------~~~~lP~~~~~------------~~~~~~~~~~~~~l  208 (394)
T COG2814         151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLL----------LWKLLPPSEIS------------GSLPGPLRTLLRLL  208 (394)
T ss_pred             HHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHhCCCccCC------------CCCCcchhHHHHHh
Confidence            988888777     99999988771   11111          00111100000            00011222355778


Q ss_pred             cCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhc-C-CCCChhhHHHHHHHhhhhhhhcc
Q psy7965         154 SSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSA-G-STLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      |+|+.+...+...+     .+.+.+...+|...++++. | +........+.+++..++|+.++
T Consensus       209 ~~p~v~~~l~~t~l-----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g  267 (394)
T COG2814         209 RRPGVLLGLLATFL-----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG  267 (394)
T ss_pred             cCchHHHHHHHHHH-----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            88855543333322     2335677788888888776 3 33345777888888888888888

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.81  E-value=3.3e-20  Score=150.25  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+......+.+.....+|++.++++|++.|++++. .......++|++|+++|++++++.+.+.++|
T Consensus        48 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG  126 (368)
T TIGR00903        48 LLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLG  126 (368)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            478999999987766555544433333347999999999999999986 4555666799999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++++.++..     +||+.|.+.+
T Consensus       127 ~~l~~~~~~~l~~~~gWr~~f~~~~  151 (368)
T TIGR00903       127 IIFALAAGLKIYTAGGLQLLIIPIA  151 (368)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHH
Confidence            9999888777     9999998855

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0253|consensus

Probab=99.81  E-value=1.2e-19  Score=140.35  Aligned_cols=251  Identities=17%  Similarity=0.183  Sum_probs=174.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      .+|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.
T Consensus       136 ~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~  213 (528)
T KOG0253|consen  136 SADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQ  213 (528)
T ss_pred             ehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHH
Confidence            58999999999999999999999999999999999999999999999 899999999999999999988877 8899999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC---------------ChHHHHhcCChHHHHHHHHHHhCCccc----------hHHH
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL---------------TPIFLMKSGKPEKAEVSLRYYRGAQYD----------VATE  131 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~  131 (257)
                      +....+...     ||||......               +|++.+.++++++|.+.++++.+.|..          ..++
T Consensus       214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~  293 (528)
T KOG0253|consen  214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDR  293 (528)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhh
Confidence            988888766     8998755444               999999999999999999888765431          1111


Q ss_pred             HHHHHHHHH-----HhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC--------------
Q psy7965         132 LAAIQKEID-----AASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG--------------  192 (257)
Q Consensus       132 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  192 (257)
                      .++.+.+.+     ..++...+..+++.. +++|+.++....++...++ +|........+++...              
T Consensus       294 ~e~e~~~~~~~~~~a~ke~rg~~~nLlsp-~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e  371 (528)
T KOG0253|consen  294 QEQEESDLDDSKSSAAKEVRGGTTNLLSP-KLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELE  371 (528)
T ss_pred             hhhhhhchhhhhhccccccccchHhhcCh-HHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHH
Confidence            111111111     112333455666654 4888888888777755444 3333333333222111              


Q ss_pred             -------CCCChhhHHHHHHHhhhhhhhcc-----ccCCCcc------------------ccchHHHHHHHHHHHHHhhc
Q psy7965         193 -------STLDPSISAIIVGVVQCIVTGLS-----NSGSDVS------------------SIAFLPLISVIMFIVMFSLG  242 (257)
Q Consensus       193 -------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~  242 (257)
                             +....+.-.++..+..++|.++.     .++++.+                  .......+..+..-.+.+.+
T Consensus       372 ~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~  451 (528)
T KOG0253|consen  372 TRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA  451 (528)
T ss_pred             hhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch
Confidence                   11123455677888888888887     2222211                  11222223344444555666


Q ss_pred             cccccceeeccccCC
Q psy7965         243 FGPIPWMMVGELFAA  257 (257)
Q Consensus       243 ~~~~~~~~~~e~~P~  257 (257)
                      + ...|+|..|++||
T Consensus       452 f-qvaYvYtPEVyPT  465 (528)
T KOG0253|consen  452 F-QVAYVYTPEVYPT  465 (528)
T ss_pred             h-eEEEEecCcccch
Confidence            6 5567999999997

>KOG2532|consensus

Probab=99.81  E-value=1.2e-19  Score=149.60  Aligned_cols=192  Identities=21%  Similarity=0.249  Sum_probs=139.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +++||+|-|+++.++.++.+++++++..+.+  ++.+++.|+++|++.|..+|....+.+.|.|++||++..++...+..
T Consensus        95 ~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q  174 (466)
T KOG2532|consen   95 YLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQ  174 (466)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999998754  55889999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhh------hHHHHHhhcC-------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhh-
Q psy7965          79 LGVLYVYCLGLS------TYTVIAIGCL-------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASE-  144 (257)
Q Consensus        79 ~G~~~~~~~~~~------~Wr~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  144 (257)
                      +|.+++..+++.      ||++.|++.+       ...++...++|++.          +.-.++|.+.+++...+++. 
T Consensus       175 ~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h----------~~is~~El~~I~~~k~~~~~~  244 (466)
T KOG2532|consen  175 LGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH----------PNISEKELKYIEKGKSEAHVK  244 (466)
T ss_pred             HHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC----------CCCCHHHHHHHHhcccccccC
Confidence            999888766665      8999999888       22223333333321          11233444444443332222 


Q ss_pred             --hhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhh
Q psy7965         145 --KKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQ  208 (257)
Q Consensus       145 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (257)
                        .+.+|+++++++.     +..+.+..+....+.+.+..|+|.|+++. .+.+........++..
T Consensus       245 ~~~~vP~~~i~ts~~-----vwai~~~~f~~~~~~~~l~~y~PtY~~~V-L~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  245 KKPPVPYKAILTSPP-----VWAIWISAFGGNWGFYLLLTYLPTYLKEV-LGFDVRETGFLSALPF  304 (466)
T ss_pred             CCCCCCHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hCCChhhhhHHHHHHH
Confidence              3568999999973     33344444444445788999999999987 3444443333333333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.80  E-value=2.2e-19  Score=148.77  Aligned_cols=100  Identities=25%  Similarity=0.330  Sum_probs=93.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.++++++.+++++++.++++|++.|++.|..++....++.|++|+|+|+++.++.+.+..+|
T Consensus        75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg  154 (426)
T PRK12307         75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG  154 (426)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++++.+...     +||+.+++..
T Consensus       155 ~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        155 NIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHH
Confidence            9998877654     8999988755

>PRK15075 citrate-proton symporter; Provisional

Probab=99.80  E-value=1.1e-19  Score=150.92  Aligned_cols=100  Identities=18%  Similarity=0.291  Sum_probs=85.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||++++.+.+++.+++++++++++++        .++++|+++|++.|...+....+++|++|+++|++++++
T Consensus        78 ~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~  157 (434)
T PRK15075         78 AYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW  157 (434)
T ss_pred             HHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH
Confidence            368999999999999999999999999999877        468999999999999999889999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~  100 (257)
                      .+.+.++|..+++.++.             .+||+.|++..
T Consensus       158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            88776666555444332             28999998754

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=8.4e-20  Score=149.28  Aligned_cols=99  Identities=19%  Similarity=0.137  Sum_probs=93.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++..++..+.++++|++.++++|++.|++.+...+....++.|++|+|+|++.+++.+....+|.
T Consensus        52 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  131 (399)
T TIGR00893        52 LLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG  131 (399)
T ss_pred             HHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++++.++..     +||+.+.+.+
T Consensus       132 ~~~~~~~~~l~~~~~~~~~~~~~~  155 (399)
T TIGR00893       132 IIGGPLVGWILIHFSWQWAFIIEG  155 (399)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHH
Confidence            999888775     8999887765

>KOG1330|consensus

Probab=99.78  E-value=6e-20  Score=146.07  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=95.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++|||.||.++.+|..++.++++..+++..+|++.++|.+.|+|++...+..+.+++|.+|.++|++++++++...++|
T Consensus        90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG  169 (493)
T KOG1330|consen   90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG  169 (493)
T ss_pred             HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh------hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      ..+|.+.+..      .|||.|...+
T Consensus       170 sglG~vvgs~va~~~~~Wr~af~~~a  195 (493)
T KOG1330|consen  170 SGLGYVVGSVVASLTFWWRWAFRGSA  195 (493)
T ss_pred             cceeEEeeeeeccCccceEEEEEeeh
Confidence            9988888776      5999998887

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.77  E-value=5e-18  Score=139.97  Aligned_cols=100  Identities=12%  Similarity=0.153  Sum_probs=92.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.++++++.++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+.++|
T Consensus        65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  144 (412)
T TIGR02332        65 IMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT  144 (412)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHHHHHhhh-----------hhHHHHHhhcC
Q psy7965          81 VLYVYCLGL-----------STYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~-----------~~Wr~~~~~~~  100 (257)
                      ..+++.++.           .+||+.|.+.+
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~  175 (412)
T TIGR02332       145 MALGLILSGYILALDGLMALKGWQWLFLLEG  175 (412)
T ss_pred             HHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Confidence            988877754           28999998876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.77  E-value=5e-19  Score=146.90  Aligned_cols=100  Identities=7%  Similarity=-0.013  Sum_probs=93.1

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++.++.++.+++.++.++++|++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|
T Consensus        80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  159 (434)
T PRK11663         80 IVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG  159 (434)
T ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+...     +||+.|.+.+
T Consensus       160 ~~~~~~~~~~l~~~~gw~~~f~~~~  184 (434)
T PRK11663        160 GALIPLVVGAIALHYGWRYGMMIAG  184 (434)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHH
Confidence            9999887665     8999987765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.77  E-value=3e-18  Score=140.82  Aligned_cols=100  Identities=16%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++.+.++.++++++.+++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus        69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  148 (405)
T TIGR00891        69 LWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG  148 (405)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----h--HHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----T--YTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~--Wr~~~~~~~  100 (257)
                      ..+++.++..     +  ||+.+.+.+
T Consensus       149 ~~~~~~l~~~l~~~~~~~w~~~f~~~~  175 (405)
T TIGR00891       149 AVVAAQVYSLVVPVWGDGWRALFFISI  175 (405)
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            9999888765     4  999987765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.75  E-value=1.8e-17  Score=135.79  Aligned_cols=99  Identities=14%  Similarity=0.177  Sum_probs=93.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++..++++.+++++|++.++++|+++|++.+...+....++.|++|+|+|++++++.+.+.++|.
T Consensus        67 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~  146 (390)
T PRK03545         67 LTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM  146 (390)
T ss_pred             HHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.++..     +||+.|++.+
T Consensus       147 ~ig~~l~~~l~~~~gw~~~f~~~~  170 (390)
T PRK03545        147 VLGLPLGRVIGQYLGWRTTFLAIG  170 (390)
T ss_pred             HHHhhHHHHHHHHhcHHHHHHHHH
Confidence            999888765     8999998876

>TIGR00895 2A0115 benzoate transport

Probab=99.75  E-value=2.4e-18  Score=140.96  Aligned_cols=100  Identities=27%  Similarity=0.350  Sum_probs=92.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus        74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  153 (398)
T TIGR00895        74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG  153 (398)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+...     +||..+.+.+
T Consensus       154 ~~~~~~~~~~l~~~~g~~~~~~~~~  178 (398)
T TIGR00895       154 AAVGGFLAGWLIPVFGWRSLFYVGG  178 (398)
T ss_pred             HHHHHHHHHHHhhcccceeehhhhh
Confidence            9999888765     8998887764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.74  E-value=6.1e-19  Score=143.53  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=91.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|
T Consensus        52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  131 (379)
T TIGR00881        52 SVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG  131 (379)
T ss_pred             HHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-Hhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVY-CLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~-~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++ .++..     +||+.+++.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (379)
T TIGR00881       132 GGLLPPLVLFGIAELYSWHWVFIVPG  157 (379)
T ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            99888 34433     8999887665

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.74  E-value=1.3e-17  Score=136.51  Aligned_cols=100  Identities=26%  Similarity=0.351  Sum_probs=89.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIY--------MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||+++..+.++..++.++.++++++.        .+++.|+++|++.+...+....++.|++|+++|++..++
T Consensus        57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  136 (394)
T TIGR00883        57 HFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSF  136 (394)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHH
Confidence            468999999999999999999999999988865        488999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhh-------------hhHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGL-------------STYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~-------------~~Wr~~~~~~~  100 (257)
                      .+.+..+|.++++.+..             .+||+.+.+.+
T Consensus       137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  177 (394)
T TIGR00883       137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSA  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHH
Confidence            99999999988877642             27999887765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.74  E-value=6.1e-18  Score=141.74  Aligned_cols=100  Identities=19%  Similarity=0.114  Sum_probs=90.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +++||+|||+++..+.++.+++++++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..
T Consensus        98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  177 (465)
T TIGR00894        98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ  177 (465)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999887654  5588899999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      +|.++++.+...      +||+.|++.+
T Consensus       178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~  205 (465)
T TIGR00894       178 LGTFIFLPISGWLCESWGGWPMIFYVFG  205 (465)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence            999988888654      7999888776

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.74  E-value=8.9e-18  Score=136.06  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=92.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      +++||+|||+++..+.++..++.++..+.+     +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.
T Consensus        56 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (365)
T TIGR00900        56 ALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQA  135 (365)
T ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHH
Confidence            368999999999999999999998888887     999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +..+|.++++.++..     +||+.+++.+
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  165 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDA  165 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999988766     8999887765

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.74  E-value=8.9e-18  Score=138.36  Aligned_cols=100  Identities=24%  Similarity=0.289  Sum_probs=92.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus        72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  151 (406)
T PRK11551         72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG  151 (406)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.++..     +||+.+++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~  176 (406)
T PRK11551        152 GALASVIGVLAAGDAAWRHIFYVGG  176 (406)
T ss_pred             HHHHHHHHHHHccccCHHHHHHHHH
Confidence            9999888755     7999887755

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.73  E-value=1.4e-17  Score=136.51  Aligned_cols=99  Identities=12%  Similarity=0.060  Sum_probs=87.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+....++.|++| ++|+++++++..+...|
T Consensus        66 ~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g  144 (393)
T PRK09705         66 WLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGG  144 (393)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999997 88999999998877777


Q ss_pred             HHHHHHhhhh------hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      ..+++.++..      +||..+.+.+
T Consensus       145 ~~~g~~~~~~l~~~~~~w~~~~~~~~  170 (393)
T PRK09705        145 GGLGAAITPWLVQHSETWYQTLAWWA  170 (393)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            7777666554      7998765543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.73  E-value=2.7e-18  Score=143.84  Aligned_cols=100  Identities=13%  Similarity=-0.019  Sum_probs=87.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      +++||+|||+++..+.++++++++..+.     ++|++.+++.|++.|++++...+....+++|++|+++||+++++++.
T Consensus        86 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~  165 (467)
T PRK09556         86 YYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNI  165 (467)
T ss_pred             hHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeec
Confidence            4789999999999998888888777665     58999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHhhhh--------hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS--------TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~--------~Wr~~~~~~~  100 (257)
                      +.++|.++++.+...        +||..|.+.+
T Consensus       166 ~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g  198 (467)
T PRK09556        166 SHNLGGAGAGGVALWGANYFFDGHVIGMFIFPS  198 (467)
T ss_pred             ccchhhhHHHHHHHHHHHhhccCcchhHHHHHH
Confidence            999999988877643        4787776644

>KOG2533|consensus

Probab=99.72  E-value=2.7e-18  Score=142.08  Aligned_cols=204  Identities=15%  Similarity=0.104  Sum_probs=145.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||++..+.+..+.+++++.+++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.
T Consensus       104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~  183 (495)
T KOG2533|consen  104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN  183 (495)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence            68999999999999999999999998899999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHhhhh-----------hHHHHHhhcCCh-------HHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHH--
Q psy7965          82 LYVYCLGLS-----------TYTVIAIGCLTP-------IFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDA--  141 (257)
Q Consensus        82 ~~~~~~~~~-----------~Wr~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  141 (257)
                      ++++++++.           ||||.|++.+..       .++...+.|+++.     ...+ ++.+-..++.+++...  
T Consensus       184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-----fl~~-~ek~~~~~~~~~~~~~~~  257 (495)
T KOG2533|consen  184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-----FLTD-EEKELVVERLRESPSGGI  257 (495)
T ss_pred             HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc-----ccch-HHHHHHHHHHHhccCCCc
Confidence            888887654           899999998822       2223344444431     1111 0000001111111111  


Q ss_pred             -hhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhc-C-CCCChhhHHHHHHHhhhhhhhccc
Q psy7965         142 -ASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSA-G-STLDPSISAIIVGVVQCIVTGLSN  216 (257)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  216 (257)
                       ++.+...+++.+++|+.|.    .....++... ..+++.+|+|.++.+. + ++.++...+....+.++++.+++.
T Consensus       258 ~~~~~~~~~~~a~~dp~vw~----~~l~~~~~~l-v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag  330 (495)
T KOG2533|consen  258 ENKFKWKGFKEALKDPGVWP----FSLCYFFLKL-VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAG  330 (495)
T ss_pred             ccccCHHHHHHHHhchhHHH----HHHHHHHHhh-ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHH
Confidence             1134456788899984433    2222222222 3688999999999983 2 345567777778888888888773

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.71  E-value=5.6e-17  Score=132.98  Aligned_cols=99  Identities=18%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||++++.+.++.+++.++..+++|++.+++.|++.|++.|...+....++.|++|+|+|+++.++...+.++|.
T Consensus        78 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~  157 (394)
T PRK10213         78 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL  157 (394)
T ss_pred             HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.++..     +||+.|++.+
T Consensus       158 ~ig~~l~~~l~~~~gw~~~f~~~~  181 (394)
T PRK10213        158 VIAAPLGSFLGELIGWRNVFNAAA  181 (394)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHH
Confidence            999888876     8999998765

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.71  E-value=3.3e-17  Score=141.06  Aligned_cols=90  Identities=20%  Similarity=0.280  Sum_probs=81.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--------------------------------------------------   30 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--------------------------------------------------   30 (257)
                      +++||+|||+++.++.++++++++++++.+                                                  
T Consensus        90 ~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  169 (633)
T TIGR00805        90 YFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKES  169 (633)
T ss_pred             HhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCC
Confidence            478999999999999999999999988763                                                  


Q ss_pred             -hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          31 -NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        31 -~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                       .+..++++|+++|+|.+..++...+++.|++|+++|+++.++++....+|..+++++++.
T Consensus       170 ~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~  230 (633)
T TIGR00805       170 LMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF  230 (633)
T ss_pred             ceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence             245788999999999999999999999999999999999999999999999999887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0252|consensus

Probab=99.71  E-value=1.6e-17  Score=132.17  Aligned_cols=255  Identities=18%  Similarity=0.170  Sum_probs=151.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN-------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      +++||+|||+++...++++.+++++++++..       ...+...|++.|+|.|+.+|.+.++.+|...+++||...+..
T Consensus       106 ~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaav  185 (538)
T KOG0252|consen  106 WLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAV  185 (538)
T ss_pred             HHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEE
Confidence            5799999999999999999999998887432       568899999999999999999999999999999999999988


Q ss_pred             HHHHHHhHHHHHHhhhh--------------------hHHHHHhhcCChHHHHhcC--ChHHHHHHHHHHhCCccchH--
Q psy7965          74 QMFLTLGVLYVYCLGLS--------------------TYTVIAIGCLTPIFLMKSG--KPEKAEVSLRYYRGAQYDVA--  129 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~--------------------~Wr~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~--  129 (257)
                      .+.+..|.+.+.+++..                    -||..+.+.+.|..+...-  +.+|..+......++.+...  
T Consensus       186 Fa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d  265 (538)
T KOG0252|consen  186 FAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD  265 (538)
T ss_pred             EEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence            77777776666555422                    5999998887443321110  11111111000000000000  


Q ss_pred             ------HHHHHHHHHHHHhhhhh---hhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCC--CCChh
Q psy7965         130 ------TELAAIQKEIDAASEKK---ATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGS--TLDPS  198 (257)
Q Consensus       130 ------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  198 (257)
                            .+.++.++.....+.++   ..+...+..+ +-++++..+..++..... .|....++..+++..|.  +.+..
T Consensus       266 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~  343 (538)
T KOG0252|consen  266 MKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTY  343 (538)
T ss_pred             cccccccccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchH
Confidence                  00000000000001111   1233444444 456777777778877776 78888899999987761  11122


Q ss_pred             -------hH-HHHHHHhhhhhhhcc---------------------------ccCCCccccchHHHHHHHHHHHHHhhcc
Q psy7965         199 -------IS-AIIVGVVQCIVTGLS---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGF  243 (257)
Q Consensus       199 -------~~-~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (257)
                             .. ..+.....++|..+.                           ..............++..+..++..+|.
T Consensus       344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP  423 (538)
T KOG0252|consen  344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP  423 (538)
T ss_pred             HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence                   11 122222233344443                           1111101112222334445556667777


Q ss_pred             ccccceeeccccCC
Q psy7965         244 GPIPWMMVGELFAA  257 (257)
Q Consensus       244 ~~~~~~~~~e~~P~  257 (257)
                      +....++++|.||+
T Consensus       424 n~ttfivpaE~FPa  437 (538)
T KOG0252|consen  424 NATTFIVPAEIFPA  437 (538)
T ss_pred             CceeEEeehhhchH
Confidence            77888999999996

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.69  E-value=6.9e-18  Score=136.11  Aligned_cols=99  Identities=25%  Similarity=0.407  Sum_probs=91.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++.+++.++..+++|++.++++|++.|++.+...+....++.|++|+|+|++++++.+....+|.
T Consensus        55 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  134 (352)
T PF07690_consen   55 LSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS  134 (352)
T ss_dssp             HHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh
Confidence            68999999999999999999977777778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++++.++..     +||+.+++.+
T Consensus       135 ~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen  135 ILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             HHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             hcccchhhhhhhcccccccccccc
Confidence            999999877     8999988877

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.69  E-value=1.4e-16  Score=131.31  Aligned_cols=100  Identities=18%  Similarity=0.282  Sum_probs=91.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++.+.++.+++++++.+++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|
T Consensus        73 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (413)
T PRK15403         73 PLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVA  152 (413)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999998767777788999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.++..     +||+.|++.+
T Consensus       153 ~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403        153 PIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999888865     8999998766

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.68  E-value=7.5e-17  Score=131.16  Aligned_cols=99  Identities=20%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+..++.....+.|++| |+|+++.++...+.++|
T Consensus        60 ~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  138 (377)
T TIGR00890        60 LLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLG  138 (377)
T ss_pred             HHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchh
Confidence            36899999999999999999999999999999999999999999999888888888889987 67999999999999998


Q ss_pred             HHHHHHhh-hh----hHHHHHhhcC
Q psy7965          81 VLYVYCLG-LS----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~-~~----~Wr~~~~~~~  100 (257)
                      ..+++.+. ..    +||+.|.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~f~~~~  163 (377)
T TIGR00890       139 SFILSPLITSVINLEGVPAAFIYMG  163 (377)
T ss_pred             HhHHHHHHHHHHhcccHHHHHHHHH
Confidence            87654443 33    7999988766

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=1.9e-16  Score=129.37  Aligned_cols=100  Identities=26%  Similarity=0.346  Sum_probs=92.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|
T Consensus        62 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  141 (385)
T TIGR00710        62 PLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALA  141 (385)
T ss_pred             hHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.++..     +||+.+.+.+
T Consensus       142 ~~~g~~~~~~l~~~~~~~~~~~~~~  166 (385)
T TIGR00710       142 PAVAPLLGGYILVWLSWHAIFAFLS  166 (385)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            9888888766     8999887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.68  E-value=1.7e-16  Score=133.88  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=91.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccC-CccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~   79 (257)
                      +++||+|||++++.+.++..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+
T Consensus        63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~  142 (495)
T PRK14995         63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG  142 (495)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999998888777776765 789999999999999999


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      |..++|.+++.     +||+.|++..
T Consensus       143 g~~~gp~lgg~l~~~~gwr~~f~i~~  168 (495)
T PRK14995        143 GAAFGPLVGGILLEHFYWGSVFLINV  168 (495)
T ss_pred             HHHHHHHHHHHhhccCChHHHHHHHH
Confidence            99999999877     8999998765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.67  E-value=9.8e-17  Score=135.12  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=94.1

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++.+.++..++.+++++++|++.++++|+++|++.+...+....++.|++|+++|+++.++++.+..+|
T Consensus        59 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  138 (485)
T TIGR00711        59 WLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVA  138 (485)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+++.     +||+.|++.+
T Consensus       139 ~~~g~~~~~~l~~~~~w~~~f~~~~  163 (485)
T TIGR00711       139 PALGPTLGGWIIENYHWRWIFLINV  163 (485)
T ss_pred             hhhhhccHhHhccCcCceehhhhhh
Confidence            9999888776     8999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.67  E-value=1.9e-16  Score=132.21  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=85.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +++||+|||++++.+.++.+++.+..++++    +++.+++.|++.|++.|...+.....+.|++|+++|++++++++.+
T Consensus        85 ~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  164 (452)
T PRK11273         85 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA  164 (452)
T ss_pred             hhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            478999999999999999999999888753    6888999999999999998888888899999999999999999999


Q ss_pred             HHHhH-HHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGV-LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~-~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|. +.++++...     +||+.|++.+
T Consensus       165 ~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~  194 (452)
T PRK11273        165 HNVGGGLPPLLFLLGMAWFNDWHAALYMPA  194 (452)
T ss_pred             HHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence            98886 445554321     8999998865

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.67  E-value=3.3e-16  Score=127.25  Aligned_cols=86  Identities=17%  Similarity=0.166  Sum_probs=74.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +++||+|||+++.++.++..++.++.++++ +++.+++.|++.|++.+. .+....+++|++|+++|+++.++.+...++
T Consensus        59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  137 (366)
T TIGR00886        59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNM  137 (366)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHH
Confidence            368999999999999999999999999999 999999999999998654 566788999999999999999998866666


Q ss_pred             hHHHHHHh
Q psy7965          80 GVLYVYCL   87 (257)
Q Consensus        80 G~~~~~~~   87 (257)
                      |..+++.+
T Consensus       138 g~~~~~~i  145 (366)
T TIGR00886       138 GGGVAQFV  145 (366)
T ss_pred             HHHHHHHH
Confidence            65555444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.65  E-value=1.5e-15  Score=127.45  Aligned_cols=99  Identities=10%  Similarity=0.076  Sum_probs=81.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.++.+++++++.++++|++.|++.+... ....+++|++|+++|+++.++.+...++|
T Consensus        93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g  171 (476)
T PLN00028         93 PVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLG  171 (476)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999988643 45567899999999999999987655555


Q ss_pred             HHHH----HHhhh----------hhHHHHHhhcC
Q psy7965          81 VLYV----YCLGL----------STYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~----~~~~~----------~~Wr~~~~~~~  100 (257)
                      ..++    +.+..          .+||+.|++.+
T Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        172 GGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            5444    33321          27999998877

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.64  E-value=3.2e-16  Score=130.31  Aligned_cols=100  Identities=18%  Similarity=0.064  Sum_probs=86.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +++||+|||+++..+.++.+++.++....    ++++.+.+.|++.|++.|..++.....+.|++|+++|++++++.+.+
T Consensus        83 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712        83 SVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             hhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence            47899999999999999999998887664    46778889999999999999888889999999999999999999999


Q ss_pred             HHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      ..+|..+++.+...      +||..|++.+
T Consensus       163 ~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~  192 (438)
T TIGR00712       163 HNIGGGIPPLLVLLGMAWFNDWHAALYFPA  192 (438)
T ss_pred             HHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            99888877654332      8999988765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.64  E-value=2.8e-15  Score=118.64  Aligned_cols=182  Identities=17%  Similarity=0.169  Sum_probs=123.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN---IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++.||+|.|++..++.++..+-++..+++.+   ++++++++++.|++. +.+++...++++++|+|++|.++++.. ..
T Consensus        71 ~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~G  148 (417)
T COG2223          71 FLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AG  148 (417)
T ss_pred             hhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cc
Confidence            4689999999999999999999999999754   459999999999964 558888999999999999999999998 77


Q ss_pred             HHhHHHHHHhhhh-----h---HHHHHhhcC-------ChHHHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHh
Q psy7965          78 TLGVLYVYCLGLS-----T---YTVIAIGCL-------TPIFLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAA  142 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~---Wr~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (257)
                      ++|..+..+++..     +   ||....+..       ...|+..++.++...                         +.
T Consensus       149 N~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~-------------------------~~  203 (417)
T COG2223         149 NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA-------------------------SV  203 (417)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc-------------------------cc
Confidence            7776666555544     6   888776665       333444443333200                         00


Q ss_pred             hhhh-hhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         143 SEKK-ATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       143 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ++.. ..++.++++++.|.     ..+.++..+.+...+..+.|.++++. .+.+..........+.+++++.-
T Consensus       204 ~~~~~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~-fg~~~~~Ag~~a~~f~~~g~l~R  271 (417)
T COG2223         204 KPQLPAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQ-FGLSPVTAGLIAFLFPLIGALAR  271 (417)
T ss_pred             cccchhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHHHH
Confidence            1111 34566777775554     23333334445677888999999876 33444444444444444444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.64  E-value=1.3e-15  Score=125.24  Aligned_cols=83  Identities=16%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      ++.||+|.|+++.++.++..+.++..+++     ++++.+++.|++.|++ |..++.....+++|+|+++||++.++...
T Consensus        92 ~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g  170 (462)
T PRK15034         92 FMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGG  170 (462)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHH
Confidence            36899999999999999999999999987     7999999999999998 77889999999999999999999999965


Q ss_pred             HHHHhHHHH
Q psy7965          76 FLTLGVLYV   84 (257)
Q Consensus        76 ~~~~G~~~~   84 (257)
                      ..++|..++
T Consensus       171 ~G~~G~~l~  179 (462)
T PRK15034        171 LGNLGVSVM  179 (462)
T ss_pred             HHhhHHHHH
Confidence            555665443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.64  E-value=1.9e-15  Score=123.55  Aligned_cols=99  Identities=14%  Similarity=0.215  Sum_probs=91.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|+++++....+..+|.
T Consensus        61 l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  140 (382)
T PRK10091         61 FSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVAN  140 (382)
T ss_pred             HHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999888888899999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.++..     +||+.|.+.+
T Consensus       141 ~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091        141 LLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHhccHHHHHhhhccHHHHHHHHH
Confidence            988877655     8999998876

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.63  E-value=2.1e-15  Score=127.41  Aligned_cols=100  Identities=17%  Similarity=0.296  Sum_probs=93.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|
T Consensus        77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  156 (496)
T PRK03893         77 AMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIG  156 (496)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+...     +||+.|.+..
T Consensus       157 ~~~~~~~~~~l~~~~~w~~~f~~~~  181 (496)
T PRK03893        157 AVVAAQVYSLVVPVWGWRALFFIGI  181 (496)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHH
Confidence            9999888766     8999987754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.62  E-value=3e-15  Score=122.75  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=84.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++++.++.+++++.+.++.+.   ++.|+++|++.+...|...+++.|++|+|+|++++++.+....+|
T Consensus        60 ~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~  136 (393)
T PRK11195         60 AFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA  136 (393)
T ss_pred             HhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999998887776664   788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh----hHHHHHhhc
Q psy7965          81 VLYVYCLGLS----TYTVIAIGC   99 (257)
Q Consensus        81 ~~~~~~~~~~----~Wr~~~~~~   99 (257)
                      .+++|.+++.    .|+..+.+.
T Consensus       137 ~~~Gp~lgG~l~~~~~~~~~~i~  159 (393)
T PRK11195        137 ILLGTVLGGALADPHAEAALAVC  159 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887    444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.62  E-value=2.3e-15  Score=123.75  Aligned_cols=100  Identities=18%  Similarity=0.284  Sum_probs=92.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+...+...+++.|++|+|+|+++.++.+....+|
T Consensus        68 ~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  147 (400)
T PRK11646         68 AIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG  147 (400)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             HHHHHHhhhh----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      ..+++.+++.    +||+.|++.+
T Consensus       148 ~~ig~~l~g~l~~~g~~~~f~~~~  171 (400)
T PRK11646        148 AVIGALLGSWLLQYDFRLVCATGA  171 (400)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999888876    8999888766

>PRK03699 putative transporter; Provisional

Probab=99.61  E-value=2.5e-15  Score=123.37  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=89.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+++..+.++..++.++..++++++.+++.|++.|++.|...+....++.|++|+++|+++++..+....+|.
T Consensus        65 l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  144 (394)
T PRK03699         65 LMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAG  144 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999898889999999999999999998888888887


Q ss_pred             HHHHHhhhh------hHHHHHhhcC
Q psy7965          82 LYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      .++|.+...      +||+.|.+.+
T Consensus       145 ~~~~~~~~~l~~~~~gw~~~f~~~~  169 (394)
T PRK03699        145 MIFPIIAAYLLARSIEWYWVYACIG  169 (394)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHH
Confidence            777766543      8999998766

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.61  E-value=6.2e-15  Score=120.30  Aligned_cols=100  Identities=26%  Similarity=0.384  Sum_probs=92.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|
T Consensus        48 ~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (377)
T PRK11102         48 PMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIA  127 (377)
T ss_pred             hHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.++..     +||+.+.+.+
T Consensus       128 ~~~~~~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102        128 PLLAPIIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHH
Confidence            9999888765     8999887765

>PRK11043 putative transporter; Provisional

Probab=99.61  E-value=4.1e-15  Score=122.41  Aligned_cols=100  Identities=23%  Similarity=0.311  Sum_probs=89.1

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..+.......+|
T Consensus        63 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (401)
T PRK11043         63 PLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALS  142 (401)
T ss_pred             hHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999988888877888999999999999998888888888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.++..     +||+.+++.+
T Consensus       143 ~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043        143 PALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Confidence            8888877765     8999887765

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.61  E-value=1.9e-15  Score=122.70  Aligned_cols=97  Identities=16%  Similarity=0.289  Sum_probs=90.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|... ....++.+|+|+++|+++.++..++..+|
T Consensus        84 lLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG  162 (511)
T TIGR00806        84 LLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLG  162 (511)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhh----hHHHHHhh
Q psy7965          81 VLYVYCLGLS----TYTVIAIG   98 (257)
Q Consensus        81 ~~~~~~~~~~----~Wr~~~~~   98 (257)
                      .+++++++..    +||.....
T Consensus       163 ~~Ia~~L~qll~s~gWr~y~~L  184 (511)
T TIGR00806       163 VFLSSVLGQLLVTLGWISYSTL  184 (511)
T ss_pred             HHHHHHHHHHHHhcCchhHHHH
Confidence            9999888876    88875433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.61  E-value=5.8e-15  Score=121.14  Aligned_cols=100  Identities=20%  Similarity=0.312  Sum_probs=91.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+.+..+.++..++.++...+++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|
T Consensus        60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~  139 (392)
T PRK10473         60 KIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII  139 (392)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999989999999999999999999999999998898


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.++..     +||+.+++.+
T Consensus       140 ~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473        140 PVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             HHHHHHHHHHHHhCcChHHHHHHHH
Confidence            8888888765     8999887765

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.59  E-value=5.7e-15  Score=121.26  Aligned_cols=100  Identities=27%  Similarity=0.357  Sum_probs=90.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+....+..|.+++++|+++.+..+.+..+|
T Consensus        65 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (394)
T PRK11652         65 PLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVS  144 (394)
T ss_pred             hHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999998888888888899999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.++..     +||+.+.+.+
T Consensus       145 ~~~g~~i~~~l~~~~g~~~~f~~~~  169 (394)
T PRK11652        145 PLLAPLIGGLLTTLFGWRACYLFLL  169 (394)
T ss_pred             HHHHHHHHHHHHhccChHHHHHHHH
Confidence            8888887765     8999888765

>TIGR00896 CynX cyanate transporter

Probab=99.58  E-value=1e-14  Score=118.17  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++..++.+.. .+++.+.+++.|++.|++.+...+....++.|++| ++|+++.++.+.+.++|.
T Consensus        58 l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  135 (355)
T TIGR00896        58 LARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGA  135 (355)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHH
Confidence            6899999999999999888888777 77889999999999999999988888888899886 689999999999988888


Q ss_pred             HHHHHhhhh-------hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-------TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-------~Wr~~~~~~~  100 (257)
                      .+++.+...       +||+.|...+
T Consensus       136 ~i~~~~~~~l~~~~~~~w~~~f~~~~  161 (355)
T TIGR00896       136 ALAAAATVPLAQHSGGHWQQALAWWA  161 (355)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            888766544       3998876654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.58  E-value=6.9e-15  Score=120.24  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=83.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+.++.+++.+..++++|++.++++|++.|++.+...+.....+.|..++++|+++++.++.+.++|
T Consensus        63 ~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  142 (381)
T PRK03633         63 YVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLG  142 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999988888777889999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+++.++..
T Consensus       143 ~~~g~~~~~~  152 (381)
T PRK03633        143 TVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHhc
Confidence            9999988876

>TIGR00901 2A0125 AmpG-related permease

Probab=99.57  E-value=2.2e-14  Score=116.25  Aligned_cols=99  Identities=15%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             ccccc-----CchhHH-HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           2 FADKF-----GRKPVI-LAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         2 l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      ++||+     ||||.+ +.+.++.++.....++.   .+.+.+....++.+++.+...+...+++.|++|+|+|+++.++
T Consensus        44 ~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~  123 (356)
T TIGR00901        44 LVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI  123 (356)
T ss_pred             HHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH
Confidence            57887     899974 56777777777777776   4566677777888888888889999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhh-----h--------HHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGLS-----T--------YTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~-----~--------Wr~~~~~~~  100 (257)
                      .+.+..+|.++++.++..     +        ||..|++.+
T Consensus       124 ~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a  164 (356)
T TIGR00901       124 YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA  164 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence            999999999999888755     6        999998877

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.57  E-value=1.8e-14  Score=118.85  Aligned_cols=100  Identities=27%  Similarity=0.325  Sum_probs=89.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+++..+..+..++.+...++++++.+++.|++.|++.+...+.....+.|++|+++|.+..++......+|
T Consensus        70 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  149 (406)
T PRK15402         70 PLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLA  149 (406)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999888888999999999999999999888877888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.++..     +||+.+++.+
T Consensus       150 ~~~g~~i~~~l~~~~~w~~~~~~~~  174 (406)
T PRK15402        150 PLLGPLVGAALIHVLPWRGMFVLFA  174 (406)
T ss_pred             HHHHHHHHHHHHHccCccHHHHHHH
Confidence            8888877655     8999988766

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=1.7e-14  Score=118.72  Aligned_cols=100  Identities=18%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA--------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||++++.+.++.+++.+...++        .++..+++.|++.|++.+...+....++.|+.|+|+|++++++
T Consensus        73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  152 (399)
T PRK05122         73 RYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISW  152 (399)
T ss_pred             hHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhh
Confidence            37899999999999999888877665543        2567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+.+...|..+++.++..     +||+.+.+..
T Consensus       153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  185 (399)
T PRK05122        153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM  185 (399)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            988888888888887765     8998876655

>PRK10133 L-fucose transporter; Provisional

Probab=99.56  E-value=4e-14  Score=117.61  Aligned_cols=87  Identities=23%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLI---LFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.||+|||+++..+.++++++++++   ..+++++.++++|+++|+|.|...+....++.|+.|+++|...+++.+..+.
T Consensus        84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~  163 (438)
T PRK10133         84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS  163 (438)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            6899999999999999999999875   4578999999999999999999999999999998888877778899999988


Q ss_pred             HhHHHHHHhh
Q psy7965          79 LGVLYVYCLG   88 (257)
Q Consensus        79 ~G~~~~~~~~   88 (257)
                      +|..+++.++
T Consensus       164 ~G~~~g~~~g  173 (438)
T PRK10133        164 FGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHH
Confidence            8888887664

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.55  E-value=9.3e-15  Score=122.07  Aligned_cols=99  Identities=18%  Similarity=0.148  Sum_probs=87.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFV-ARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +++||+|||++++.+.++..+++++++++++++.+++ .|++.|++.+...+....++.|+++ ++|+++.++.+.+..+
T Consensus        76 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~  154 (455)
T TIGR00892        76 ILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPV  154 (455)
T ss_pred             HHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccH
Confidence            3689999999999999999999999999999988865 5689999999877777788899996 7899999999999999


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      |..+++.+...     +||+.|++.+
T Consensus       155 g~~~~~~l~~~l~~~~gwr~~f~~~~  180 (455)
T TIGR00892       155 FLSTLAPLNQYLFESFGWRGSFLILG  180 (455)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            98888877655     8999998877

>TIGR00897 2A0118 polyol permease family

Probab=99.55  E-value=2.7e-14  Score=117.56  Aligned_cols=89  Identities=9%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLIL---F-AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||+|||+++..+.++.++++++..   . .++++.+++.|++.|++.+...+.....+.|++|+++|++++++.+.+.
T Consensus        71 l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  150 (402)
T TIGR00897        71 VAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVY  150 (402)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            68999999999999999998876553   3 3578899999999999988877777888899999999999999999999


Q ss_pred             HHhH-HHHHHhhhh
Q psy7965          78 TLGV-LYVYCLGLS   90 (257)
Q Consensus        78 ~~G~-~~~~~~~~~   90 (257)
                      ++|. ++++.++..
T Consensus       151 ~~g~~~~g~~~~~~  164 (402)
T TIGR00897       151 SIGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            9986 577777643

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.53  E-value=4e-14  Score=116.21  Aligned_cols=100  Identities=22%  Similarity=0.222  Sum_probs=84.2

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF--------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||++++.+.+...++.+....        .++++.++++|+++|++.+...+...+++.|++|+|+|++++++
T Consensus        73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~  152 (392)
T PRK12382         73 RLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSW  152 (392)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhH
Confidence            3689999999999998887766543322        35789999999999999998888888899999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+.+...|..+++.++..     +||..+.+..
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~  185 (392)
T PRK12382        153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTM  185 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence            999999999888888765     8998766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.53  E-value=3.8e-14  Score=130.99  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +++||+|||++++++.++..++.++..+   +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus        69 ~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  148 (1146)
T PRK08633         69 FLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFT  148 (1146)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHH
Confidence            4789999999999988776666555443   5789999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh
Q psy7965          78 TLGVLYVYCLGLS   90 (257)
Q Consensus        78 ~~G~~~~~~~~~~   90 (257)
                      .+|.++++.++..
T Consensus       149 ~ig~~lg~~l~~~  161 (1146)
T PRK08633        149 IVAILAGTALFSF  161 (1146)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888765

>PRK10504 putative transporter; Provisional

Probab=99.52  E-value=1.1e-13  Score=116.39  Aligned_cols=99  Identities=19%  Similarity=0.247  Sum_probs=91.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||++++.+.++.+++.+++.++++.+.+++.|+++|++.+...+....++.|++|+++|+++.++.....++|.
T Consensus        68 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (471)
T PRK10504         68 LADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP  147 (471)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+++.     +||+.|.+..
T Consensus       148 ~~g~~~~g~l~~~~gw~~~f~~~~  171 (471)
T PRK10504        148 LLGPALGGLLVEYASWHWIFLINI  171 (471)
T ss_pred             HhhhHHHHHHHhhccHHHHHHHHH
Confidence            999888766     8999988754

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.52  E-value=3.1e-14  Score=115.98  Aligned_cols=99  Identities=18%  Similarity=0.222  Sum_probs=81.3

Q ss_pred             cccccCchhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhh--hhHHHHHHH
Q psy7965           2 FADKFGRKPVILA-FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL--GSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~   78 (257)
                      ++||+|||+.++. +.++..++.++..++++++.+++.|++.|.+.+...+....+..|+.|+++|+..  .+..+.+.+
T Consensus        56 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (375)
T TIGR00899        56 RSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQIS  135 (375)
T ss_pred             HHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh
Confidence            6899999887654 6666677788888999999999999999988888888888888999888877754  567777788


Q ss_pred             HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +|..+++.++..     +||+.|++.+
T Consensus       136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899       136 LAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             HHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            888888887765     8999998876

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=1.3e-13  Score=114.05  Aligned_cols=100  Identities=13%  Similarity=0.056  Sum_probs=85.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      +++||+|||+++..+.++.+++.+....     .++++.+++.|++.|++.+...+....++.|+.|+++|+++.++.+.
T Consensus        74 ~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (417)
T PRK10489         74 VLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITML  153 (417)
T ss_pred             HHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH
Confidence            3689999999999988877777665442     46788999999999999888888889999999999999999999999


Q ss_pred             HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ...+|..+++.+++.     +||+.+.+.+
T Consensus       154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        154 TVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             HHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999888765     7888887655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.50  E-value=1.4e-13  Score=127.25  Aligned_cols=98  Identities=11%  Similarity=0.113  Sum_probs=81.6

Q ss_pred             CcccccCchhHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILA---FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +++||+|||+++..   +.+...+..+.....++++.++++|+++|++.+...+...+++.|++|+++|++++++.+++.
T Consensus        74 ~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~  153 (1140)
T PRK06814         74 QLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGT  153 (1140)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHH
Confidence            47899999997643   222333333333345899999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh-----hHHHHHhh
Q psy7965          78 TLGVLYVYCLGLS-----TYTVIAIG   98 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~Wr~~~~~   98 (257)
                      ++|.+++|.+++.     +|++.|..
T Consensus       154 ~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        154 FIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHH
Confidence            9999999999988     89988733

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.50  E-value=2.5e-13  Score=111.93  Aligned_cols=89  Identities=24%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++.||+|||+++..+.++.+++.++...   .++++.+++.|++.|+|.|...+....++.|..|+++|++.+++.+...
T Consensus        60 ~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (410)
T TIGR00885        60 IFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN  139 (410)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence            3689999999999999999999988654   3589999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhh
Q psy7965          78 TLGVLYVYCLGL   89 (257)
Q Consensus        78 ~~G~~~~~~~~~   89 (257)
                      ++|..+++.++.
T Consensus       140 ~lG~~~g~~i~~  151 (410)
T TIGR00885       140 PFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHHHHHHHH
Confidence            999988877754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=1.7e-13  Score=110.33  Aligned_cols=99  Identities=29%  Similarity=0.452  Sum_probs=93.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+.+..+.++..++.+....+++++.+++.|++.|++.+...+....++.|++|+|+|++..++.+....+|.
T Consensus        57 ~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  136 (352)
T cd06174          57 LSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA  136 (352)
T ss_pred             HHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.++..     +||+.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174         137 LLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999988877     6999887766

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=99.47  E-value=3.7e-13  Score=110.54  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++.+.++..++.++..++++++.++++|.+.|.+.+...+....+..|..|+++|+++.++.+...++|
T Consensus        65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg  144 (395)
T PRK10054         65 ILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIG  144 (395)
T ss_pred             HHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999888888778888899999999999999999999999999


Q ss_pred             HHHHHHhhhh----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      ..++|.++..    +||..|.+.+
T Consensus       145 ~~igp~l~~~l~~~g~~~~f~~~~  168 (395)
T PRK10054        145 WTVGPPLGTLLVMQSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHH
Confidence            9999988877    7998887665

>KOG3764|consensus

Probab=99.46  E-value=2.3e-14  Score=112.43  Aligned_cols=103  Identities=25%  Similarity=0.264  Sum_probs=95.2

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc-hhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI-RGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~   79 (257)
                      .+.||+|+|..++++.+.+...++++++..+++.++++|.++|+|.+...+...++++|.+|.++ |++++|+.-.+.++
T Consensus       128 ~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfisl  207 (464)
T KOG3764|consen  128 NLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISL  207 (464)
T ss_pred             hhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhc
Confidence            36899999999999999999999999999999999999999999999999999999999999866 79999999999999


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcCChH
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCLTPI  103 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~~~~  103 (257)
                      |.+++|.+++.     |-+..|.+.+...
T Consensus       208 G~lvgPpfGGilYe~~Gk~aPFlVL~~v~  236 (464)
T KOG3764|consen  208 GVLVGPPFGGILYEFAGKSAPFLVLAIVL  236 (464)
T ss_pred             cceecCCcccchHhhcCCcCcHHHHHHHH
Confidence            99999999988     7777787777433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=6.2e-13  Score=109.64  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++.+.+..+|
T Consensus        76 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  154 (408)
T PRK09874         76 GLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSG  154 (408)
T ss_pred             HHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHH
Confidence            36899999999999999999999999899999999999999999765 45777788999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++++.++..     +||+.+.+.+
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~~~  179 (408)
T PRK09874        155 ALLGPLAGGLLADSYGLRPVFFITA  179 (408)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            9888888765     8999887766

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.43  E-value=1.4e-12  Score=109.99  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             Cccccc-----CchhH-HHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965           1 PFADKF-----GRKPV-ILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS   71 (257)
Q Consensus         1 ~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~   71 (257)
                      +++||+     |||+. +..+.++.+++....++.   ++++.+.+.+++.|++.+...+...++..|++|+|+|+++.+
T Consensus        67 pl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~  146 (491)
T PRK11010         67 PLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAA  146 (491)
T ss_pred             HHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence            468999     99986 667777777877777774   468889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          72 FFQMFLTLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        72 ~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      +.+.+..+|.++++.+...      |||..|++.+
T Consensus       147 i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a  181 (491)
T PRK11010        147 ISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMA  181 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence            9999999998888765543      7999998876

>KOG2615|consensus

Probab=99.43  E-value=2.4e-13  Score=106.22  Aligned_cols=88  Identities=28%  Similarity=0.459  Sum_probs=81.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||++++.|++..++..++.+.+.|+..+...|++.|+..|- ..++.++++|+.++|+|+..++.+...+++|.
T Consensus        91 ~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGf  169 (451)
T KOG2615|consen   91 LSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGF  169 (451)
T ss_pred             hhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcch
Confidence            68999999999999999999999999999997777779999998776 45667899999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy7965          82 LYVYCLGLS   90 (257)
Q Consensus        82 ~~~~~~~~~   90 (257)
                      ++||.++++
T Consensus       170 ilGPmIGgy  178 (451)
T KOG2615|consen  170 ILGPMIGGY  178 (451)
T ss_pred             hhcchhhhH
Confidence            999999887

>KOG2504|consensus

Probab=99.40  E-value=5e-13  Score=111.94  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVAR-FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r-~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.||+|.|++.+.+.++..+|.++..++++++++++.. ++.|+|.|..+......+..+| +++|+.+.++...+.++|
T Consensus       104 l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G  182 (509)
T KOG2504|consen  104 LCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVG  182 (509)
T ss_pred             HHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcc
Confidence            57999999999999999999999999999999988888 7899999999999999999777 578999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++-|.+...     |||+.+++.+
T Consensus       183 ~~~~~~l~~~l~~~~G~r~~~l~~~  207 (509)
T KOG2504|consen  183 TVVFPPLLKYLLSKYGWRGALLIFG  207 (509)
T ss_pred             eeeHHHHHHHHHHHhCcHHHHHHHH
Confidence            8877777655     9999888777

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.38  E-value=5.2e-12  Score=104.07  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=84.2

Q ss_pred             Cccccc-----Cchh-HHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965           1 PFADKF-----GRKP-VILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS   71 (257)
Q Consensus         1 ~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~   71 (257)
                      +++||+     |||| .+.++.++.+++.....+.   .+++.+++..++.++..+...+...+++.|++|+|+|+++.+
T Consensus        54 ~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~  133 (402)
T PRK11902         54 PLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAA  133 (402)
T ss_pred             HHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHH
Confidence            368999     8876 6888888888888877776   357778888888888888889999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          72 FFQMFLTLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        72 ~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      +...+..+|.++++.+...      +||..|++.+
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a  168 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA  168 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence            9999999998888775543      7999998866

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.36  E-value=1.7e-12  Score=109.17  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=88.9

Q ss_pred             Ccccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhhhccccccccceeeeccCCcc--chhhhhhHHHHH
Q psy7965           1 PFADK-FGRKPVILAFCFPYILSWLLILFAQNIYM-LFVARFIAGVGTGGLCAIIPMFIGEIAESS--IRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~   76 (257)
                      +++|| +|||++++.+.+++.++.++++++++... +.++|.++|+|.|...+...++++|.+|++  +|+.+.++++.+
T Consensus        72 ~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~  151 (489)
T PRK10207         72 YVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMS  151 (489)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence            47999 99999999999999999999999876444 558999999999999999999999999887  458889999999


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|..++|.++++     |||+.|++..
T Consensus       152 ~nig~~~g~~l~g~l~~~~gw~~~F~i~~  180 (489)
T PRK10207        152 INIGSLISLSLAPVIADKFGYSVTYNLCG  180 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence            99999999888777     9999998864

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.34  E-value=3.5e-12  Score=99.40  Aligned_cols=181  Identities=15%  Similarity=0.168  Sum_probs=130.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +++|+|.++.+..++++..+|.++.... +...++.+-.+.|.|.+......+.++.+.+|++ -+..++++....++|.
T Consensus        70 Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~a  147 (395)
T COG2807          70 LARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGA  147 (395)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHH
Confidence            6789999999999999999999999887 7888999999999999999999999999999855 5999999999999988


Q ss_pred             HHHHHhhhh------hHHHHHhhcCChH------HHHhcCChHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhH
Q psy7965          82 LYVYCLGLS------TYTVIAIGCLTPI------FLMKSGKPEKAEVSLRYYRGAQYDVATELAAIQKEIDAASEKKATF  149 (257)
Q Consensus        82 ~~~~~~~~~------~Wr~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
                      .+++.+...      +||....+.+.|.      |+....|++                          ....+.+..+-
T Consensus       148 aLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--------------------------~~~~~~~~~~~  201 (395)
T COG2807         148 ALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--------------------------AASIATKLVSV  201 (395)
T ss_pred             HHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--------------------------ccccccccccc
Confidence            888777655      6999887777332      332211100                          00112223344


Q ss_pred             HhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcC-CCCChhhHHHHHHHhhhhhhhcc
Q psy7965         150 SDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAG-STLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      .++||+|..|.     +.+++..+...+|....|+|.++.+.| +..+......+..+.+++.++..
T Consensus       202 ~~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~  263 (395)
T COG2807         202 RKVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLI  263 (395)
T ss_pred             cccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence            56888884444     223333333347889999999999998 33334444555555566666655

>PTZ00207 hypothetical protein; Provisional

Probab=99.33  E-value=4.4e-12  Score=107.44  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=86.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ   74 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~   74 (257)
                      +++||+|||+++.++.+++.+++++++++      ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.++..
T Consensus        83 ~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~  161 (591)
T PTZ00207         83 FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMK  161 (591)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHH
Confidence            36899999999999999999999999997      689999999999999999998988899999996 78999999999


Q ss_pred             HHHHHhHHH-HHHhhhh---hHHHHHhhcC
Q psy7965          75 MFLTLGVLY-VYCLGLS---TYTVIAIGCL  100 (257)
Q Consensus        75 ~~~~~G~~~-~~~~~~~---~Wr~~~~~~~  100 (257)
                      .+.++|..+ +++....   +|+..+++.+
T Consensus       162 ~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~  191 (591)
T PTZ00207        162 TFTGLGSAILGSIQLAFFSDNTSAYFFFLM  191 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999975 4444444   7887776666

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.32  E-value=3.2e-12  Score=89.08  Aligned_cols=99  Identities=28%  Similarity=0.382  Sum_probs=90.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++|++..++.+....+|.
T Consensus        21 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  100 (141)
T TIGR00880        21 LTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGP  100 (141)
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHH
Confidence            57999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+...     +|++.+.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~  124 (141)
T TIGR00880       101 LLGPPLGGVLAQFLGWRAPFLFLA  124 (141)
T ss_pred             HHhHHhHHHHhcccchHHHHHHHH
Confidence            999888776     7888776655

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.30  E-value=1.8e-11  Score=103.27  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++|.||||.+++.+.++..+|+++++-++|...++.+..+.|+|.|.... ....++|..|.|.|+...++......+..
T Consensus       101 LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~  179 (599)
T PF06609_consen  101 LSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITT  179 (599)
T ss_pred             HHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhh
Confidence            78999999999999999999999999999999999999999999877664 45568999999999988877665554444


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++.++..     +|||.|++..
T Consensus       180 ~~~~~ia~~~~~~~~WRw~~~~~~  203 (599)
T PF06609_consen  180 WISPLIAQLFAAHSGWRWIFYIFI  203 (599)
T ss_pred             cccHHHHHHhccCCCcchHHHHHH
Confidence            444555433     8999998877

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.29  E-value=1.8e-11  Score=100.61  Aligned_cols=98  Identities=17%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             ccccCchhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch--hhhhhHHHHHHHH
Q psy7965           3 ADKFGRKPVI-LAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR--GALGSFFQMFLTL   79 (257)
Q Consensus         3 ~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~   79 (257)
                      +||+|||+.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...+....+..|+.++++|  +...++.+.+.++
T Consensus        75 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  154 (393)
T PRK15011         75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSL  154 (393)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            7999999875 456666677888888899998887666555554556677888888888877655  3455788888889


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      |.++++.++..     |||..|++.+
T Consensus       155 g~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        155 AWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             HHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            99999888865     9999987776

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.28  E-value=9.8e-12  Score=101.74  Aligned_cols=95  Identities=9%  Similarity=-0.103  Sum_probs=72.4

Q ss_pred             cccccCchhHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVI----LAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||+|||...    ..+..+..+  .....+++++.+++.|.+.|.+.+...+...++..|+  +++|++..+......
T Consensus        62 l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~  137 (382)
T TIGR00902        62 LIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIG  137 (382)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHH
Confidence            68999985443    222222222  2334678899999999999999888888888877664  578899999999999


Q ss_pred             HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++|.++++.+++.     |||..|.+..
T Consensus       138 slG~~~g~~l~g~l~~~~g~~~~f~~~~  165 (382)
T TIGR00902       138 SAAFIIGSALFGGLIGMFDEQNILAILT  165 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            9999999988766     8999887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.28  E-value=1.4e-11  Score=100.93  Aligned_cols=95  Identities=9%  Similarity=0.004  Sum_probs=70.8

Q ss_pred             cccccCch----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRK----PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +.||+|||    +.+.+...+.  .......+++++.+++.|++.|++.+...+...++..++  +++|++..+......
T Consensus        62 l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~  137 (382)
T PRK11128         62 RVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWG  137 (382)
T ss_pred             HHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHH
Confidence            58999984    3333222222  222333457899999999999999988888887777776  466888888888888


Q ss_pred             HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++|..++|.++..     +||..|++.+
T Consensus       138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128        138 SIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            8999999888876     8999887665

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.24  E-value=6.9e-12  Score=105.92  Aligned_cols=120  Identities=14%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLL---ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~   77 (257)
                      ++||+|||+.+..+.++..++.+.   ...+++...+++++++.|++.+........++.|.+|++.|+++.++ ++.+.
T Consensus       309 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        309 LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV  388 (490)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence            689999999988877654443332   22244577788899999887777667777888899999999999997 55544


Q ss_pred             HHhHHHHHHhhhh------hHHHHHhhcC---------------ChHHHHhc-----CChHHHHHHHHHHh
Q psy7965          78 TLGVLYVYCLGLS------TYTVIAIGCL---------------TPIFLMKS-----GKPEKAEVSLRYYR  122 (257)
Q Consensus        78 ~~G~~~~~~~~~~------~Wr~~~~~~~---------------~~~~l~~~-----~~~~~~~~~~~~~~  122 (257)
                      ..| .++|.+...      +|+..+++..               +|.|+..+     ++++|+.+.+++++
T Consensus       389 ~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        389 LVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            444 444444333      3554433222               55666644     77788888887776

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.9e-11  Score=93.25  Aligned_cols=89  Identities=22%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLIL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.+|+|+|+.++.++.+.++++.+..   ...++..++++-++.|.|.+...+....++....|+++....+++.|..++
T Consensus        71 ~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~  150 (422)
T COG0738          71 LIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG  150 (422)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh
Confidence            57999999999999999999999885   567899999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhh
Q psy7965          79 LGVLYVYCLGLS   90 (257)
Q Consensus        79 ~G~~~~~~~~~~   90 (257)
                      +|.+++|+++..
T Consensus       151 lGa~~gp~~g~~  162 (422)
T COG0738         151 LGAILGPLLGSS  162 (422)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.24  E-value=1.2e-11  Score=103.93  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=91.3

Q ss_pred             Ccccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc---hhhhhhHHHHH
Q psy7965           1 PFADK-FGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI---RGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~   76 (257)
                      +++|| +|||+++.++.++.+++.++.+++++.+.+.++|++.|++.|...+...++++|++|+++   |+.+.++++.+
T Consensus        70 ~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~  149 (475)
T TIGR00924        70 WFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMS  149 (475)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence            36899 899999999999999999999998888899999999999999999999999999998764   88899999999


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|.++++.+++.     +||+.|.+.+
T Consensus       150 ~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       150 INIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            99999999988876     8999987765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.22  E-value=1.2e-10  Score=95.87  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHH---Hh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLIL---FA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +++||+|||+.++.+....+++.....   +.     +....+++.+++.|++.+...+....+..|..+  +++...+.
T Consensus        60 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~  137 (396)
T TIGR00882        60 LISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGK  137 (396)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccch
Confidence            368999999999887666655443221   11     223456677888999888888887777666533  33445566


Q ss_pred             HHHHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965          73 FQMFLTLGVLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      .....++|..+++.+++.    +||..|++.+
T Consensus       138 ~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~  169 (396)
T TIGR00882       138 ARMFGCVGWALCASIAGILFSIDPQIVFWLGS  169 (396)
T ss_pred             hhhhcccHHHHHHHHHhhhhccCchHHHHHHH
Confidence            666667777777777665    8999887766

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=6.9e-10  Score=93.67  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=83.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      ++||+.||++++.+-++.++..+...+.     .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+..
T Consensus        68 laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~  147 (524)
T PF05977_consen   68 LADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSIS  147 (524)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence            6899999999999888877665554442     36788999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++..++||.+++.     |-.+.|.+.+
T Consensus       148 ~niar~iGPalgG~Lva~~G~~~~f~ina  176 (524)
T PF05977_consen  148 FNIARIIGPALGGILVAFFGAAAAFLINA  176 (524)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999888877     5455555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.13  E-value=5.9e-11  Score=103.53  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +++||+|||++++++.++.++++++.++.++...+++.+++.|++.++.++...++++|++|+++|++++++.+....+|
T Consensus       617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlG  696 (742)
T TIGR01299       617 LLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAA  696 (742)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999998888888888999999888889999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      .+++|.+++.
T Consensus       697 aiigp~i~g~  706 (742)
T TIGR01299       697 AVLGILIFGS  706 (742)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.10  E-value=1.7e-10  Score=97.57  Aligned_cols=100  Identities=15%  Similarity=0.196  Sum_probs=86.4

Q ss_pred             Ccccc-cCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHHH
Q psy7965           1 PFADK-FGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~   76 (257)
                      +++|| +|||+++..+.++.+++..++++++ +.+.+.++|.+.|++.|...+....++.|++|+++  |..+.++++.+
T Consensus        79 ~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~  158 (500)
T PRK09584         79 WLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMS  158 (500)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHH
Confidence            47899 5999999999999999999988874 56677888999999999999998899999998654  45678888999


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|..++|.+++.     |||+.|.+.+
T Consensus       159 ~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        159 INIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            99999999988876     8999998766

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.09  E-value=6.4e-10  Score=92.25  Aligned_cols=99  Identities=16%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHH---HhhhHH-HHHHHHHHHhhhccccccccceeeeccCC--ccchhhhhhHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLIL---FAQNIY-MLFVARFIAGVGTGGLCAIIPMFIGEIAE--SSIRGALGSFFQM   75 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~   75 (257)
                      ++||+|||++++++..+..++.....   .++... ....+.++.++..+.........+.++.+  .++|+...+..+.
T Consensus        69 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  148 (420)
T PRK09528         69 ISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARM  148 (420)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHH
Confidence            68999999999887666655443221   111111 11122223333333333332223334333  3456777777777


Q ss_pred             HHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      ..++|..+++.+++.    +|++.|++.+
T Consensus       149 ~~~~g~~i~~~~~g~l~~~~~~~~f~~~~  177 (420)
T PRK09528        149 WGSLGWALCAFIAGILFNINPQINFWLGS  177 (420)
T ss_pred             hhhHHHHHHHHHHHHHHhcCchHhHHHHH
Confidence            778888888777765    8998887765

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.07  E-value=2.7e-10  Score=94.70  Aligned_cols=90  Identities=23%  Similarity=0.410  Sum_probs=68.8

Q ss_pred             Cccc----ccCchhHHHHH-HHHHHHHHHHHHHhhhHH-----------------HHHHHHHHHhhhccccccccceeee
Q psy7965           1 PFAD----KFGRKPVILAF-CFPYILSWLLILFAQNIY-----------------MLFVARFIAGVGTGGLCAIIPMFIG   58 (257)
Q Consensus         1 ~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~g~~~~~~~~~i~   58 (257)
                      +++|    |+|||+.++.. .+...++..+.+++++..                 .+.++-.+..++.+...+...++++
T Consensus        61 ~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALia  140 (477)
T TIGR01301        61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLA  140 (477)
T ss_pred             ehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4689    59999998874 666666667777766542                 2333334455677878888899999


Q ss_pred             ccCCccch--hhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          59 EIAESSIR--GALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        59 e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      |.+|+++|  +.+.++.+...++|.++++.+++.
T Consensus       141 Dl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301       141 DLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999865  578999999999999999988876

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.05  E-value=2.6e-11  Score=102.49  Aligned_cols=208  Identities=14%  Similarity=0.169  Sum_probs=3.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh--------------------------------------------------
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--------------------------------------------------   30 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--------------------------------------------------   30 (257)
                      ++.+|..|-+.+-.+.+++++|++++++-+                                                  
T Consensus        60 y~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  139 (539)
T PF03137_consen   60 YFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSG  139 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchH
Confidence            346676777788889999999998877610                                                  


Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------------------
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS--------------------   90 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------------------   90 (257)
                      -+..++++.++.|+|....++...+|+-|..++++-+.++++.++...+|.++|.++++.                    
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p  219 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP  219 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence            024688999999999999999999999999999999999999999999999988888754                    


Q ss_pred             -------hHHHHHhhcC-------ChHHHHhcCChHHHHHH-HHHHhCCccchHHHHHHHHHHH------HHhhhhhhhH
Q psy7965          91 -------TYTVIAIGCL-------TPIFLMKSGKPEKAEVS-LRYYRGAQYDVATELAAIQKEI------DAASEKKATF  149 (257)
Q Consensus        91 -------~Wr~~~~~~~-------~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  149 (257)
                             .|..-|.+.+       .|.+.+.++-+++.... .++..+++.+ +.+.++.+++.      +.-++-....
T Consensus       220 ~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~df~~~l  298 (539)
T PF03137_consen  220 SDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEE-DSDKDSFKDPKSKKSFGKSIKDFPKAL  298 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchh-hhhhhcccccccccchhhhhhhHHHHH
Confidence                   2444444444       44444444333331100 0000000000 00000000000      0111222344


Q ss_pred             HhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         150 SDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      +.+++||     +.+...+...........+.+|+|.|++.+ .+.++..++.+.++..+++..++
T Consensus       299 ~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~Q-F~~sas~A~~l~G~v~ip~~~~G  358 (539)
T PF03137_consen  299 KRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQ-FGLSASQASLLTGIVSIPGAALG  358 (539)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHhhhhcchhhee
Confidence            5556665     444455555555556778999999999886 56677788888888877766666

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.01  E-value=5.6e-10  Score=91.92  Aligned_cols=99  Identities=19%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|..|+++|+++.++++....+|.
T Consensus       272 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (399)
T PRK05122        272 LINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSL  351 (399)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999888888888888888888888999999999998888877888899999999999999999888888


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+.+.     +|+..+.+.+
T Consensus       352 ~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        352 GITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHH
Confidence            777666555     7888877665

>KOG3626|consensus

Probab=99.00  E-value=2.4e-09  Score=91.65  Aligned_cols=206  Identities=12%  Similarity=0.146  Sum_probs=136.2

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHh--------------------h--------------------------------
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILFA--------------------Q--------------------------------   30 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~--------------------------------   30 (257)
                      +-|.-|-+.+-++.++++++++++++-                    +                                
T Consensus       156 G~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (735)
T KOG3626|consen  156 GSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSY  235 (735)
T ss_pred             ccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCch
Confidence            445666667777888888888887761                    0                                


Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------------------
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS--------------------   90 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------------------   90 (257)
                      -+..++++.++.|+|....++...+|+-|...+++-...+++..+...+|.++|.+++++                    
T Consensus       236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP  315 (735)
T KOG3626|consen  236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP  315 (735)
T ss_pred             hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence            023678889999999999999999999999999999999999999999999999888765                    


Q ss_pred             ----hHHHHHhhcC-------ChHHHHhcCChHHHHH-HHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCch
Q psy7965          91 ----TYTVIAIGCL-------TPIFLMKSGKPEKAEV-SLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRAN  158 (257)
Q Consensus        91 ----~Wr~~~~~~~-------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (257)
                          .|..-|++.+       .|.+.+.++.+++..+ ..++.+..+++.+ ..++..+..++-++-..+.+.+++||  
T Consensus       316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~--  392 (735)
T KOG3626|consen  316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNP--  392 (735)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccc-cccCCcchhhhHHHHHHHHHHHhcCc--
Confidence                3555566555       5555555555443221 0111111100000 00000000111123445677888887  


Q ss_pred             hHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCCCChhhHHHHHHHhhhhhhhcc
Q psy7965         159 LRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGSTLDPSISAIIVGVVQCIVTGLS  215 (257)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                         +.+...+.............+|+|.|++++ .+.+++.++.+.+...+++..++
T Consensus       393 ---if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q-fg~sas~An~l~G~i~vp~~~~G  445 (735)
T KOG3626|consen  393 ---IFMLVVLASVIESLAITGYITFLPKYLETQ-FGISASLANILTGSIGVPAAAVG  445 (735)
T ss_pred             ---hHHHHHHHHHHHHHHHhhHHHhhHHHHHHH-cCCCHHHHHHHhhhhhhhhhhhh
Confidence               333344444444445778899999999887 56788888888888888777776

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.00  E-value=1.7e-09  Score=90.10  Aligned_cols=100  Identities=17%  Similarity=0.245  Sum_probs=74.6

Q ss_pred             Ccccc----cCchh-HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhh
Q psy7965           1 PFADK----FGRKP-VILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGA   68 (257)
Q Consensus         1 ~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~   68 (257)
                      +++||    +|||| .++.+....+++.+++...++      ...+++.+++.+++.+...+...++..|.. ++++|++
T Consensus        57 ~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~  136 (437)
T TIGR00792        57 NIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES  136 (437)
T ss_pred             EeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH
Confidence            36887    78844 677788888888887776553      456777888888888887777788889987 5789999


Q ss_pred             hhhHHHHHHHHhHHHHHHhhh------------hhHHHHHhhcC
Q psy7965          69 LGSFFQMFLTLGVLYVYCLGL------------STYTVIAIGCL  100 (257)
Q Consensus        69 ~~~~~~~~~~~G~~~~~~~~~------------~~Wr~~~~~~~  100 (257)
                      ..++.+.+..+|.++++.+..            .+||+.+.+.+
T Consensus       137 ~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       137 LSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            999988888777655433321            17998877666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.99  E-value=7.7e-10  Score=92.36  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             Cccccc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCcc--chhhhhhHHHHH
Q psy7965           1 PFADKF-GRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS--IRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~   76 (257)
                      +++||+ |||+++.++.++..++.++.+..+ +...+.++..+.++|.|...+...++++|.+|++  +|..+.++.+.+
T Consensus        67 ~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~  146 (493)
T PRK15462         67 FLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAA  146 (493)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHH
Confidence            478999 999999999999999987776543 2233444555566677777777788999999986  799999999999


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|..++|.+.++     ||++.|.+.+
T Consensus       147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaa  175 (493)
T PRK15462        147 GNVGSIIAPIACGYAQEEYSWAMGFGLAA  175 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence            99999999999877     8999988765

>TIGR00889 2A0110 nucleoside transporter

Probab=98.89  E-value=1.2e-09  Score=90.52  Aligned_cols=99  Identities=19%  Similarity=0.295  Sum_probs=83.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~   76 (257)
                      ++||+|||+++..+.++.+++..+.....    +.+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ..
T Consensus       274 l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~  353 (418)
T TIGR00889       274 FLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC  353 (418)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            68999999999999999988877666632    24667788999999999888888899999999999999999997 67


Q ss_pred             HHHhHHHHHHhhhh-----------hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----------TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----------~Wr~~~~~~~  100 (257)
                      +++|.+++|.+++.           +|+..|.+.+
T Consensus       354 ~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       354 NGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            88899999888875           2888877665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.87  E-value=2.3e-09  Score=88.43  Aligned_cols=99  Identities=18%  Similarity=0.302  Sum_probs=88.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+.....+.|..|+++||+..++.+....+|.
T Consensus       281 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~  360 (408)
T PRK09874        281 LGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN  360 (408)
T ss_pred             HHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH
Confidence            68999999999999888888887777778888889999999999999999888888999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|.+++.     +|+..|++.+
T Consensus       361 ~~gp~~~G~l~~~~g~~~~f~~~~  384 (408)
T PRK09874        361 VTGPLMGAAISANYGFRAVFLVTA  384 (408)
T ss_pred             HhhHHHHHHHHhhcchhHHHHHHH
Confidence            999988876     7888887776

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.86  E-value=2.8e-09  Score=88.45  Aligned_cols=100  Identities=12%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~   79 (257)
                      ++.||+|||+.+..+.++.+++..+.+++++.+.+...+++.|++.+...+....++.|.+|++.|+...+. ++....+
T Consensus       284 ~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l  363 (420)
T PRK09528        284 FIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL  363 (420)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence            368999999999999999999888888888999999999999999888878888899999999999887665 5677778


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      |.++++.+.+.     |||..|.+.+
T Consensus       364 g~~ig~~~~G~l~~~~G~~~~f~~~~  389 (420)
T PRK09528        364 GAVFLSTLAGNLYDSIGFQGTYLILG  389 (420)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHH
Confidence            88888877766     8888887655

>PRK12382 putative transporter; Provisional

Probab=98.86  E-value=2.3e-09  Score=88.12  Aligned_cols=99  Identities=15%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+.+..+..+..++.++..+.++.+.+.++.++.|++.+...+.....+.|.+|+++|+++.++.+....+|.
T Consensus       272 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  351 (392)
T PRK12382        272 MPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY  351 (392)
T ss_pred             HHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999888888888888888888899999999998888888888999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+.+.     +|+..+.+.+
T Consensus       352 ~ig~~~~g~l~~~~g~~~~~~~~~  375 (392)
T PRK12382        352 GVSGPLAGMLATSFGYPSVFLAGA  375 (392)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHH
Confidence            998888776     7888887765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.85  E-value=3.9e-09  Score=85.86  Aligned_cols=100  Identities=13%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNI--YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      ++.||+|||+.+.++.++..++.++..+.++.  ..++...++.|++.|...+..+.++.|.+|+++|+++.++.+....
T Consensus       262 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  341 (377)
T TIGR00890       262 ALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKA  341 (377)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            36899999999999999988888877776543  3355667888888888888888899999999999999999999999


Q ss_pred             HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +|..+++.+.+.     ||++.+.+.+
T Consensus       342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~  368 (377)
T TIGR00890       342 VAGIFGGLIASHALTEIGFEYTFIVTG  368 (377)
T ss_pred             HHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence            999999988766     7888876654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.83  E-value=3.4e-08  Score=81.15  Aligned_cols=99  Identities=6%  Similarity=-0.153  Sum_probs=68.6

Q ss_pred             cccccCchhHHHHHHHHHHH-HHHHHH-H--hhh-HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYIL-SWLLIL-F--AQN-IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~-~~~~~~-~--~~~-~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      ..||+||||..++...+... ...... +  ..+ ...++..-...++..+...+....+..|..++++++...+....+
T Consensus        62 ~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g  141 (390)
T TIGR02718        62 WSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAG  141 (390)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHH
Confidence            57899999997665533222 222222 1  222 334444555666777777788888888999989889888888888


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+|.++++.....     +||..|++.+
T Consensus       142 ~~lG~~~g~~~~~~l~~~~gw~~~f~~~a  170 (390)
T TIGR02718       142 VMIGFFGGGAGTLVLFGKFGQRPAFLLVA  170 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            88888888854433     9999988877

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.82  E-value=4.7e-09  Score=84.47  Aligned_cols=99  Identities=24%  Similarity=0.333  Sum_probs=91.0

Q ss_pred             cccccCchh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKP-VILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (352)
T cd06174         234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG  313 (352)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            579999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+.+.     +|+..+.+.+
T Consensus       314 ~~i~~~i~g~l~~~~~~~~~~~~~~  338 (352)
T cd06174         314 GALGPLLAGLLLDTGGYGGVFLILA  338 (352)
T ss_pred             HHHHHHHHHHHhcccCcchHHHHHH
Confidence            9999888876     7887776655

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.76  E-value=4.4e-08  Score=81.53  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             ccc----ccCchhHHH-HHHHHHHHHHHHHHHh-h-------hHHHHHHHHHHHhhhccccccccceeeeccCC-ccchh
Q psy7965           2 FAD----KFGRKPVIL-AFCFPYILSWLLILFA-Q-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRG   67 (257)
Q Consensus         2 l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~   67 (257)
                      ++|    |+||||-.+ ++.+..+++..+.... +       ....+.+.-++..++.......-.++..|.++ +++|.
T Consensus        60 ~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~  139 (428)
T PF13347_consen   60 LSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERT  139 (428)
T ss_pred             EEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhh
Confidence            678    899777555 5778888877777665 4       12335666677788889888888999999998 57899


Q ss_pred             hhhhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965          68 ALGSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL  100 (257)
Q Consensus        68 ~~~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~  100 (257)
                      +..+.-+.+..+|.++...+...            +|++...+.+
T Consensus       140 ~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~  184 (428)
T PF13347_consen  140 RLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA  184 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence            99999888888887644444322            4887776665

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.72  E-value=6.9e-09  Score=86.96  Aligned_cols=99  Identities=15%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             cccc--cCchhHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADK--FGRKPVILA--FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||  +++|+...+  +.++.+++.++....++++.+++.+++.|++.+...+....++.|.+|++++++..++++...
T Consensus       299 l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  378 (455)
T TIGR00892       299 IAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVE  378 (455)
T ss_pred             HhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence            4676  344443333  334444555566677888999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      .+|.+++|.+++.      +|+..|++.+
T Consensus       379 ~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       379 CCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             HHHHHccccceeeeehhcCCcchHHHHhh
Confidence            9999999988876      5888887776

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.70  E-value=3.4e-08  Score=81.28  Aligned_cols=98  Identities=14%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+.+..+.+...+........++.+.+++.+++.+++.|...+....+..|..|+ +|++++++.+....+|.
T Consensus       275 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        275 FAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGW  353 (393)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHH
Confidence            68999999988877766665555555567788888899888888777767777778899875 58999999988888998


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+++.     +|+..+.+..
T Consensus       354 ~~g~~l~G~i~~~~g~~~~~~~~~  377 (393)
T PRK15011        354 IIAGSLAGIVAEIWNYHAVFWFAL  377 (393)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Confidence            888888777     7888876654

>TIGR00889 2A0110 nucleoside transporter

Probab=98.69  E-value=1.4e-07  Score=78.27  Aligned_cols=93  Identities=11%  Similarity=0.002  Sum_probs=61.2

Q ss_pred             cccccCc-hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceee----e----ccCCccchhhhhhH
Q psy7965           2 FADKFGR-KPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFI----G----EIAESSIRGALGSF   72 (257)
Q Consensus         2 l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i----~----e~~~~~~r~~~~~~   72 (257)
                      ++||+|| |+++.++.++..++..+..+.++++.+++.|.+.|++.+...+...+..    .    |......|.+..+.
T Consensus        61 l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~  140 (418)
T TIGR00889        61 IADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT  140 (418)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh
Confidence            6899965 7788888888888888888889999999999999998776665544432    1    32333344555542


Q ss_pred             HHHHHHHhHHHHHHhhhh-hHHHHH
Q psy7965          73 FQMFLTLGVLYVYCLGLS-TYTVIA   96 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~-~Wr~~~   96 (257)
                        .++.+|..++..++.. .|+..+
T Consensus       141 --lG~~ig~~l~g~l~~~~~~~~f~  163 (418)
T TIGR00889       141 --IGFIAAMWAVSLLDIELSNIQLY  163 (418)
T ss_pred             --HHHHHHHHHHHHhcccchhHHHH
Confidence              3445555544444222 466444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.64  E-value=4.2e-08  Score=79.96  Aligned_cols=98  Identities=12%  Similarity=0.251  Sum_probs=80.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+.+.++.++..+..+.....++.+.+.+.+.+.|++.|...+....++.|..|+ +|+++.++.+....+|.
T Consensus       258 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~  336 (375)
T TIGR00899       258 LIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGW  336 (375)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHH
Confidence            67999999999888777666666666677888888899999999888888888888998875 56799999998888999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+.+.     +|+..+.+.+
T Consensus       337 ~~g~~~~g~~~~~~g~~~~~~~~~  360 (375)
T TIGR00899       337 IIAGSVGGILAERWSYHAVYWFAI  360 (375)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHH
Confidence            998888766     7888776655

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09669 putative symporter YagG; Provisional

Probab=98.63  E-value=1.1e-07  Score=79.55  Aligned_cols=99  Identities=20%  Similarity=0.281  Sum_probs=66.4

Q ss_pred             cccc----cCch-hHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhhh
Q psy7965           2 FADK----FGRK-PVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGAL   69 (257)
Q Consensus         2 l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~   69 (257)
                      ++||    +||| +.++.+.+..++...+....++      ...+++..++.+.+.......-.++.+|++ ++++|.+.
T Consensus        68 lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l  147 (444)
T PRK09669         68 LVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSL  147 (444)
T ss_pred             eeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHH
Confidence            6787    7884 5566677777777765555443      345555666666666666777778999998 56889988


Q ss_pred             hhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965          70 GSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL  100 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~  100 (257)
                      .++...+..+|..+++.+...            +|+..+.+.+
T Consensus       148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            888777777776665443211            6777666555

>TIGR01272 gluP glucose/galactose transporter

Probab=98.57  E-value=1.5e-07  Score=74.81  Aligned_cols=62  Identities=15%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhh
Q psy7965          28 FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGL   89 (257)
Q Consensus        28 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~   89 (257)
                      ...++..++++-++.|.|.+...+..+.++++..|+|++++.+++.+..+++|.+++|+++.
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~   67 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG   67 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999987

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.57  E-value=7.6e-08  Score=79.49  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=77.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+.+..+.+...++.+.....++.+.+.+..++.|++.+...+....++.|.+|+++|++..++.+....+|.
T Consensus       278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  357 (406)
T PRK11551        278 LMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS  357 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence            68999999999988777777777777777777777888888988888888888999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy7965          82 LYVYCLGLS   90 (257)
Q Consensus        82 ~~~~~~~~~   90 (257)
                      .++|.+.+.
T Consensus       358 ~~g~~~~g~  366 (406)
T PRK11551        358 MAGPLLAGQ  366 (406)
T ss_pred             HHHhhhHhh
Confidence            999988776

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.55  E-value=1.4e-07  Score=77.60  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             CcccccCchhHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWL-LILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +++||+|||+.+..+.++..+..+ .....++.+.+.+..++.|+..+...+....++.|.+|+++|++++++.+....+
T Consensus       296 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  375 (405)
T TIGR00891       296 FLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL  375 (405)
T ss_pred             HHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence            368999999999888776543333 3333456667777777778777777788888999999999999999999999999


Q ss_pred             hHHHHHHhhhh-----h-HHHHHhh
Q psy7965          80 GVLYVYCLGLS-----T-YTVIAIG   98 (257)
Q Consensus        80 G~~~~~~~~~~-----~-Wr~~~~~   98 (257)
                      |..++|.+.+.     | |+..+..
T Consensus       376 g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       376 GGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHh
Confidence            99999988776     4 6555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.53  E-value=1.2e-07  Score=76.78  Aligned_cols=89  Identities=15%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQN-IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.|++.+...+....++.|..|+++|++..++.+....+|
T Consensus       270 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (365)
T TIGR00900       270 LGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAA  349 (365)
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999888888888888777774 8888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+++.+.+.
T Consensus       350 ~~~g~~~~g~  359 (365)
T TIGR00900       350 WPLGLILAGP  359 (365)
T ss_pred             HHHHHHHHHH
Confidence            9999888754

>TIGR00898 2A0119 cation transport protein

Probab=98.52  E-value=1.1e-07  Score=80.82  Aligned_cols=89  Identities=15%  Similarity=0.210  Sum_probs=75.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNI--YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+..++....+.+|.+|++.|+.++++.+....+
T Consensus       378 l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i  457 (505)
T TIGR00898       378 LIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV  457 (505)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHH
Confidence            5799999999999999999888887776543  45555666777777777888889999999999999999999999999


Q ss_pred             hHHHHHHhhhh
Q psy7965          80 GVLYVYCLGLS   90 (257)
Q Consensus        80 G~~~~~~~~~~   90 (257)
                      |.+++|.+...
T Consensus       458 g~~i~p~i~~~  468 (505)
T TIGR00898       458 GSIISPFLVYL  468 (505)
T ss_pred             HHHHHhHHHHH
Confidence            99999988765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.50  E-value=1.9e-07  Score=76.46  Aligned_cols=97  Identities=23%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      ++.||+|||+++..+..+..++.+...  + ........++.|++.+...|.....+.|..|+++++...+..+...++|
T Consensus       257 ~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG  333 (381)
T PRK03633        257 RLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVG  333 (381)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999988888777665443  2 2334456777888777778888888999999988888888888888999


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++|.+++.     +|++.|.+.+
T Consensus       334 ~~igp~~~G~l~~~~g~~~~f~~~~  358 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDNLLFIMIA  358 (381)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHH
Confidence            9999988877     7887777665

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.50  E-value=4.2e-08  Score=83.20  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +++||+|||+++..+.++..++.+.....  .+.+.+....++.++...+..+....++.|.+|+++|++.+++.+....
T Consensus       333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  412 (496)
T PRK03893        333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA  412 (496)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhh
Confidence            36899999999998877766665544432  3344444455554443334456667789999999999999999998889


Q ss_pred             HhHHHHHHhhhh-----hHHHHHhhc
Q psy7965          79 LGVLYVYCLGLS-----TYTVIAIGC   99 (257)
Q Consensus        79 ~G~~~~~~~~~~-----~Wr~~~~~~   99 (257)
                      +|..++|.+.+.     +|+..+...
T Consensus       413 ~g~~lgp~l~g~l~~~~g~~~~~~~~  438 (496)
T PRK03893        413 LGGALAPILGALIAQRLDLGTALASL  438 (496)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHH
Confidence            999999988776     677665443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.49  E-value=1.3e-07  Score=78.37  Aligned_cols=99  Identities=10%  Similarity=-0.046  Sum_probs=82.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+...+...+++.|..|++.||++.+++.....+|.
T Consensus       282 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  361 (417)
T PRK10489        282 LAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD  361 (417)
T ss_pred             hhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH
Confidence            57888888888888888888888888888888888889999998888777778899999999999999999998888888


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.+.+.     +.+..+...+
T Consensus       362 ~~g~~l~G~l~~~~g~~~~~~~~~  385 (417)
T PRK10489        362 AIGAALLGGLGAMMTPVASASASG  385 (417)
T ss_pred             hHHHHHHHHHHHHhchhhHHHHHH
Confidence            888888776     5555554444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.49  E-value=7.4e-07  Score=73.39  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=73.1

Q ss_pred             ccCchhH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhhhhHHHHH
Q psy7965           5 KFGRKPV-ILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGALGSFFQMF   76 (257)
Q Consensus         5 r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~   76 (257)
                      |+||+|- ++++.+-.++.+.++-.+++      ....++.-++.+++.......-.++.+|+++ ++||.+..++-+.+
T Consensus        78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~  157 (467)
T COG2211          78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF  157 (467)
T ss_pred             ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence            6787765 55677888888888887763      4455666788889999988888999999986 68999999999999


Q ss_pred             HHHhHHHHHHhh-----hh-------hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLG-----LS-------TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~-----~~-------~Wr~~~~~~~  100 (257)
                      .++|.++...+.     ..       ||+....+.+
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~  193 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG  193 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence            999866554433     22       6777665555

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.48  E-value=2.3e-07  Score=78.37  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh--hH--HHHHHHHHHHhhhccc-cccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NI--YMLFVARFIAGVGTGG-LCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      ++||+|||+.++.+.++.+++.++.....  +.  .....+..+.+++.+. ..+....++.|.+|+++|++++++.+..
T Consensus       329 l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  408 (479)
T PRK10077        329 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA  408 (479)
T ss_pred             HHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHH
Confidence            67999999999999999988887765432  11  1222333444444443 2366788999999999999999999888


Q ss_pred             HHHhHHHHHHh
Q psy7965          77 LTLGVLYVYCL   87 (257)
Q Consensus        77 ~~~G~~~~~~~   87 (257)
                      ..+|.++++.+
T Consensus       409 ~~~g~~~~~~~  419 (479)
T PRK10077        409 QWIANYFVSWT  419 (479)
T ss_pred             HHHHHHHHHHH
Confidence            88887776433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.48  E-value=2.3e-07  Score=76.12  Aligned_cols=88  Identities=8%  Similarity=0.081  Sum_probs=81.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G   80 (257)
                      +.||+|+|+.+.++.++..+..+..++++|.+.++..+.+.|+..|...+....++.+. |+++|++.+++++ ....+|
T Consensus       263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g  341 (382)
T TIGR00902       263 LFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL  341 (382)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999998 9999999999976 567788


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+++.+++.
T Consensus       342 ~~~g~~~~G~  351 (382)
T TIGR00902       342 IAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHH
Confidence            8888888877

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.47  E-value=8.9e-07  Score=74.52  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=68.3

Q ss_pred             CcccccC-----chhHHHHHHHHHH-HHHHHHHHhhhHHHH-HHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           1 PFADKFG-----RKPVILAFCFPYI-LSWLLILFAQNIYML-FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         1 ~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      +++||++     ||+.++++.++.. +.....+..++.... .+.+++.+++.+...+..-+++.|..+ |++....+..
T Consensus        82 ~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~  160 (468)
T TIGR00788        82 VMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLV  160 (468)
T ss_pred             HHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCee
Confidence            3689998     7777777776663 333333333454444 447899999999999999999999998 6555544333


Q ss_pred             HHH---HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          74 QMF---LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        74 ~~~---~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ...   ..+|.++++.+++.     +||..|++.+
T Consensus       161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a  195 (468)
T TIGR00788       161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITA  195 (468)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            333   33677777666655     8999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.46  E-value=1.7e-07  Score=76.70  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             cccccCchhHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSW--LLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~   76 (257)
                      ++||+|||+.+.....+..+..  +....  .++.+.+.....+.|++.+...+....++.|.+|+++|+++.++ .+.+
T Consensus       278 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  357 (394)
T TIGR00883       278 LSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA  357 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence            6899999998876555444333  22222  24667777788889999988899999999999999999999997 4566


Q ss_pred             HHHhHHHHHHhhhh-----h-HHHHHhh
Q psy7965          77 LTLGVLYVYCLGLS-----T-YTVIAIG   98 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~-Wr~~~~~   98 (257)
                      ..+|..++|.+++.     + |+...+.
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            67788788877765     4 7665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.44  E-value=6.4e-08  Score=79.17  Aligned_cols=100  Identities=19%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             Cccccc-CchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHH
Q psy7965           1 PFADKF-GRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~   75 (257)
                      |++||+ |+|+++..+.+++.+|.++.+.+.  +...+.++-.+.++|.|..-+....++.|.+|+++  |-...+++.+
T Consensus        83 ~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~  162 (498)
T COG3104          83 WLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM  162 (498)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence            579998 999999999999999999999984  78899999999999999999999999999998754  6677778889


Q ss_pred             HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +.++|++++|++..+     +|...|...+
T Consensus       163 ~iNiGsl~~p~i~~~~~~~~g~~~gF~~aa  192 (498)
T COG3104         163 GINIGSLIAPIITGLLAINYGWHVGFGLAA  192 (498)
T ss_pred             EeehHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            999999999999887     8888887776

>KOG0253|consensus

Probab=98.44  E-value=3.5e-07  Score=72.24  Aligned_cols=83  Identities=14%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIY----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +.||+|||+.+..+.+++++..++...+.+-.    .++.+|++    ..+.+.+.++|..|++|...|+...|.-....
T Consensus       404 iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRatgvGtcSsma  479 (528)
T KOG0253|consen  404 IVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMA  479 (528)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhhcchhhhhhHH
Confidence            57999999999999999999998887765433    34455544    44456788899999999999999999999999


Q ss_pred             HHhHHHHHHhh
Q psy7965          78 TLGVLYVYCLG   88 (257)
Q Consensus        78 ~~G~~~~~~~~   88 (257)
                      -+|.++.|+++
T Consensus       480 RIggI~~p~iA  490 (528)
T KOG0253|consen  480 RIGGIFSPVIA  490 (528)
T ss_pred             hhhhhhhhHHH
Confidence            99999999887

>TIGR00895 2A0115 benzoate transport

Probab=98.43  E-value=3.4e-07  Score=75.04  Aligned_cols=88  Identities=17%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+.+....+......++....++...+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.
T Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  387 (398)
T TIGR00895       308 LADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA  387 (398)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            68999999555444444433333333356777778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q psy7965          82 LYVYCLGL   89 (257)
Q Consensus        82 ~~~~~~~~   89 (257)
                      .++|.+.+
T Consensus       388 ~~g~~~~G  395 (398)
T TIGR00895       388 IIGPILAG  395 (398)
T ss_pred             HHHHHhHH
Confidence            99998765

>KOG2325|consensus

Probab=98.41  E-value=7.2e-07  Score=73.70  Aligned_cols=87  Identities=23%  Similarity=0.345  Sum_probs=70.5

Q ss_pred             ccccCc-hhHHHHHHHHHHHHHHHH-HH---hh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           3 ADKFGR-KPVILAFCFPYILSWLLI-LF---AQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         3 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      ..|.|. |+-++.+.++..+++++. ..   .+ ..+.++++|++.|+|.|. ....-.|+++....++|.++++....+
T Consensus        95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~  173 (488)
T KOG2325|consen   95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGG  173 (488)
T ss_pred             ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhH
Confidence            345554 777888999999999888 33   23 578999999999999876 566678999999999999999998888


Q ss_pred             HHHhHHHHHHhhhh
Q psy7965          77 LTLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~~~G~~~~~~~~~~   90 (257)
                      ..+|.++||.+...
T Consensus       174 ~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  174 FVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHhHHHHHH
Confidence            88888888877654

>PRK03545 putative arabinose transporter; Provisional

Probab=98.40  E-value=8.3e-07  Score=72.99  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=73.8

Q ss_pred             cccccCchhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSW-LLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      ++||+|||.+.. +..+..++. .+....++.+.+.++.++.|++.+...+.....+.|..| ++|++++++++....+|
T Consensus       264 l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g  341 (390)
T PRK03545        264 LGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIG  341 (390)
T ss_pred             HhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHH
Confidence            689999887544 444444443 334456777888888999999888777777778888876 68899999988888888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+++.     ++|..+.+.+
T Consensus       342 ~~~G~~~~G~~~~~~g~~~~~~~~~  366 (390)
T PRK03545        342 IGAGALLGNQVSLHLGLSSIGYVGA  366 (390)
T ss_pred             HHHHHHHHHHHHhccChhHHHHHHH
Confidence            8888888776     8888887766

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.39  E-value=5.9e-07  Score=75.43  Aligned_cols=100  Identities=16%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHh-----h------hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFA-----Q------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL   69 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~   69 (257)
                      +++||+|||+.+.++.++..++.++..+.     +      +...+....++.+.......+....++.|.+|+++|+++
T Consensus       341 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  420 (481)
T TIGR00879       341 FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG  420 (481)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHH
Confidence            36899999999999888888777766621     1      233333333333333333346667788999999999999


Q ss_pred             hhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          70 GSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +++.+....+|.++++.+.+.     +|++.|++.+
T Consensus       421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~  456 (481)
T TIGR00879       421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFG  456 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHH
Confidence            999999999999998887665     6777665544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=98.38  E-value=6.4e-07  Score=74.84  Aligned_cols=100  Identities=19%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH---h-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH-HH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF---A-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF-QM   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~-~~   75 (257)
                      +++||+|||+++..+.++..++.+....   . ++...+++..++.|++.+...+..+++++|.+|++.|+...++. +.
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~  387 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV  387 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence            3689999999998887766555433322   2 23444455667778888888888889999999999999888884 44


Q ss_pred             HHHHhHHHHHHhhhh-------hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS-------TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~-------~Wr~~~~~~~  100 (257)
                      +..+|..++|.+...       +|+..+....
T Consensus       388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~  419 (438)
T PRK09952        388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL  419 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            455777777766654       3666554433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.38  E-value=3.3e-07  Score=77.33  Aligned_cols=84  Identities=15%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             Cccc----ccCc-hhHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccC-Cccchhh
Q psy7965           1 PFAD----KFGR-KPVILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGA   68 (257)
Q Consensus         1 ~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~   68 (257)
                      +++|    |+|| |+.++++.+..+++..+....++      +..+++..++.+++.......-.++..|.. ++++|.+
T Consensus        64 ~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~  143 (473)
T PRK10429         64 WIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQ  143 (473)
T ss_pred             eehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHH
Confidence            3688    6799 56666788777777655544321      334555566677777777888888999998 5899999


Q ss_pred             hhhHHHHHHHHhHHHH
Q psy7965          69 LGSFFQMFLTLGVLYV   84 (257)
Q Consensus        69 ~~~~~~~~~~~G~~~~   84 (257)
                      ..++-..+.++|.++.
T Consensus       144 l~~~~~~~~~ig~~~~  159 (473)
T PRK10429        144 LVPYPRFFASLAGFVT  159 (473)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888666666654443

>KOG2563|consensus

Probab=98.37  E-value=3.6e-06  Score=68.24  Aligned_cols=90  Identities=16%  Similarity=0.036  Sum_probs=75.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh------hHH--HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ------NIY--MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      |+.||+|-|..++++..+..+|..+-..+.      .++  ....+..+.+.++-.......-+-.-|+|+++|..+..+
T Consensus       101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~  180 (480)
T KOG2563|consen  101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL  180 (480)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence            678999999999999999999999887742      234  677888888888887777767778889999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhh
Q psy7965          73 FQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~   90 (257)
                      -..+..+|..++.++...
T Consensus       181 ~v~~n~LGvavg~llppi  198 (480)
T KOG2563|consen  181 GVMGNPLGVAVGFLLPPI  198 (480)
T ss_pred             HHhcchHHHHHHhhccce
Confidence            888888888888777654

>KOG4686|consensus

Probab=98.35  E-value=4.2e-06  Score=64.05  Aligned_cols=84  Identities=15%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             cccc-cCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADK-FGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +.|| +|-|..-++-++...+|-++.+.   .+.+|.+..+|++.|+|.-.....-..|..-|+..|+.+.++++..+..
T Consensus       102 lidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvA  181 (459)
T KOG4686|consen  102 LIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVA  181 (459)
T ss_pred             eehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHH
Confidence            4554 58887777777777777777664   6889999999999999988888888999999999999999999988877


Q ss_pred             HHhHHHHH
Q psy7965          78 TLGVLYVY   85 (257)
Q Consensus        78 ~~G~~~~~   85 (257)
                      -+|..+-.
T Consensus       182 R~GstvNf  189 (459)
T KOG4686|consen  182 RLGSTVNF  189 (459)
T ss_pred             Hhhceeee
Confidence            77765443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.33  E-value=2.9e-06  Score=67.17  Aligned_cols=58  Identities=33%  Similarity=0.572  Sum_probs=49.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcccccccccee-eecc
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMF-IGEI   60 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~-i~e~   60 (257)
                      ++||+|||+.-+...++.+++++ +-..+|++.++++|++.|++....+.+--++ +.|+
T Consensus        92 laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen   92 LADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH  150 (354)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999996 4456899999999999999999888877654 4555

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.30  E-value=1.1e-06  Score=74.00  Aligned_cols=100  Identities=14%  Similarity=0.040  Sum_probs=65.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLL--ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +++||+|||+.+.....+..++..+  ....++.....+.+++.|+..............|.+|++.||.+.++.+....
T Consensus       316 ~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~  395 (467)
T PRK09556        316 WLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAY  395 (467)
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence            3689999998877655444443322  22334666677788888865443333334566799999999999999987777


Q ss_pred             H-hHHHHHHhhhh-----------------hHHHHHhhcC
Q psy7965          79 L-GVLYVYCLGLS-----------------TYTVIAIGCL  100 (257)
Q Consensus        79 ~-G~~~~~~~~~~-----------------~Wr~~~~~~~  100 (257)
                      + |..++|.+.+.                 +|+..|.+..
T Consensus       396 l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~  435 (467)
T PRK09556        396 LFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALD  435 (467)
T ss_pred             HHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHH
Confidence            5 54444443322                 4888876654

>TIGR00901 2A0125 AmpG-related permease

Probab=98.28  E-value=7.1e-07  Score=72.41  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-----------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG   70 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~   70 (257)
                      +.||+|||+.+..+.++.+++..+..+.           ++.+.+..+.++.+++.+...+...+++.|.+|+|+||+.+
T Consensus       268 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  347 (356)
T TIGR00901       268 IMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM  347 (356)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence            6799999999998888888776655543           34577888889999999999999999999999999999999


Q ss_pred             hHHHHHHH
Q psy7965          71 SFFQMFLT   78 (257)
Q Consensus        71 ~~~~~~~~   78 (257)
                      ++.++..+
T Consensus       348 g~~~~~~~  355 (356)
T TIGR00901       348 ALLSSLSA  355 (356)
T ss_pred             HHHHHHHh
Confidence            99887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.28  E-value=4.4e-06  Score=69.67  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=74.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhhhhHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGALGSFF   73 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~~~~~   73 (257)
                      ++||+|||+.+.++.++..++.+...+. ++.+.+.+..++.|++.+...+...++++|..+       ++++|...++.
T Consensus       280 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       280 LVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            6899999999999998888887777664 456677788888999999988888999988865       55679999999


Q ss_pred             HHHHHHhHHHHHHhhhh
Q psy7965          74 QMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~   90 (257)
                      +....+|..+++.+.+.
T Consensus       360 ~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       360 TFVRKLGQALAGFLVGL  376 (437)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99889998888877665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.25  E-value=3e-06  Score=72.11  Aligned_cols=90  Identities=20%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN----IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +++||+|||+.++++..+.+++..+.++..+    ...+...-+...++..+..+....+.+|.+|++.|+++.++.+..
T Consensus       357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence            3689999999999888877777666554321    111111112222222334556677889999999999999999999


Q ss_pred             HHHhHHHHHHhhhh
Q psy7965          77 LTLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~~~G~~~~~~~~~~   90 (257)
                      ..+|.++++.+...
T Consensus       437 ~~~~~~~~~~~~~~  450 (502)
T TIGR00887       437 GKAGAIIGQFGFLY  450 (502)
T ss_pred             hhhHHHHHHHHhhh
Confidence            99999888876544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.25  E-value=8.7e-07  Score=73.01  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G   80 (257)
                      +.||+|||+.+.++.++.+++..+...++|.+.+++.+++.|++.+........+..|..+++.++...+. .+....+|
T Consensus       277 l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg  356 (396)
T TIGR00882       277 IINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLA  356 (396)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHH
Confidence            67999999999999998888888777888888888999999998777666666677888888888887766 66778888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+.+.     ||+..|.+.+
T Consensus       357 ~~~~~~l~G~l~~~~G~~~~f~~~~  381 (396)
T TIGR00882       357 MIFLSTLAGNMYDSIGFQGAYLVLG  381 (396)
T ss_pred             HHHHHHhHHHHHHhcccHHHHHHHH
Confidence            8888877766     7777776655

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.24  E-value=1.1e-05  Score=68.20  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      +.||+|||+.+.++..+.+++..+..+    ..+++.+....++.|++.+...+.......|..|+++|+.+.++.+...
T Consensus       314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  393 (485)
T TIGR00711       314 MGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTR  393 (485)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHH
Confidence            579999999999999888888887763    2346677777889999999888777777888899999999999999999


Q ss_pred             HHhHHHHHHhhhh
Q psy7965          78 TLGVLYVYCLGLS   90 (257)
Q Consensus        78 ~~G~~~~~~~~~~   90 (257)
                      .+|..+++.+.+.
T Consensus       394 ~~g~~ig~~i~g~  406 (485)
T TIGR00711       394 QLGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.23  E-value=3.9e-06  Score=65.87  Aligned_cols=100  Identities=23%  Similarity=0.411  Sum_probs=80.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCc-cchhhhhhHHHH-H
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRGALGSFFQM-F   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~   76 (257)
                      .++||+|||+.+..+.....++.++..+..+  .+.+++.|...|++.+...+....++.|+.|+ ++|+...+.... .
T Consensus        61 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (338)
T COG0477          61 PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGA  140 (338)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            3689999998888888776666677777666  89999999999999999999999999999998 778998888877 5


Q ss_pred             HHHhHHHHHHhhhh-------hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-------TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-------~Wr~~~~~~~  100 (257)
                      ..+|..+++.++..       +||..+....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (338)
T COG0477         141 GALGLALGPLLAGLLLGALLWGWRAAFLLAA  171 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            77777777755543       5888555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.20  E-value=1.6e-06  Score=70.93  Aligned_cols=69  Identities=17%  Similarity=0.086  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----h-HHHHHhhcC
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----T-YTVIAIGCL  100 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~-Wr~~~~~~~  100 (257)
                      +.........+.+++.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.     + |+..+.+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~  385 (399)
T TIGR00893       311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA  385 (399)
T ss_pred             hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence            44444444444445444 788889999999999999999999999999999999888766     5 887776554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.17  E-value=4.7e-06  Score=70.00  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             CcccccCch--hHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965           1 PFADKFGRK--PVILAFCFPYILSWLLILF--------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG   70 (257)
Q Consensus         1 ~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~   70 (257)
                      ++.||+|.|  ++++.+.+++.+..+...+        .++-+.+.+.-++.|+..|..++..-++.+|..|+++.+...
T Consensus       339 ~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efF  418 (477)
T PF11700_consen  339 WLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFF  418 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHH
Confidence            367999999  8999998888776666655        577888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHHHHHHhhhh
Q psy7965          71 SFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        71 ~~~~~~~~~G~~~~~~~~~~   90 (257)
                      +++....-....++|++-+.
T Consensus       419 gly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998776

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.16  E-value=3.6e-06  Score=69.49  Aligned_cols=87  Identities=21%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHH
Q psy7965           4 DKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLY   83 (257)
Q Consensus         4 dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~   83 (257)
                      ||++.|+.+..+.++.+++.++.+.+++++.+.+...+.|++.+...+...+++.|..|+++||+++++.+....+|..+
T Consensus       269 ~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i  348 (400)
T PRK11646        269 KRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAI  348 (400)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHh
Confidence            45676777788888888888888888888888788888899888888888999999999999999999999999999999


Q ss_pred             HHHhhhh
Q psy7965          84 VYCLGLS   90 (257)
Q Consensus        84 ~~~~~~~   90 (257)
                      +|.+++.
T Consensus       349 g~~l~G~  355 (400)
T PRK11646        349 GYIGGGW  355 (400)
T ss_pred             cccchHH
Confidence            9988877

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.15  E-value=5.7e-05  Score=60.99  Aligned_cols=89  Identities=12%  Similarity=0.088  Sum_probs=68.9

Q ss_pred             cccccC-----chhHHHH-HHHHHHHHHHHHHHh-----h--------hH---HHHHHHHHHHhhhccccccccceeeec
Q psy7965           2 FADKFG-----RKPVILA-FCFPYILSWLLILFA-----Q--------NI---YMLFVARFIAGVGTGGLCAIIPMFIGE   59 (257)
Q Consensus         2 l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~--------~~---~~~~~~r~l~G~~~g~~~~~~~~~i~e   59 (257)
                      .+|+.+     ||.-+++ +..+...+..+..++     .        .+   ....+...+.|+|.+...+...++++|
T Consensus        37 ~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D  116 (403)
T PF03209_consen   37 RSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLAD  116 (403)
T ss_pred             ccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHh
Confidence            589888     7776666 666666655555442     2        11   234556678999999999999999999


Q ss_pred             cCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          60 IAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        60 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      ..|+|+|+++.++..+...+|.+++..+.+.
T Consensus       117 ~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen  117 LAPEERRPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             cCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888998888877665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10504 putative transporter; Provisional

Probab=98.14  E-value=3.1e-06  Score=71.42  Aligned_cols=89  Identities=16%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.||+|||+++..+.++..++..+..+.   ++.+.+.+..++.|++.+...+....++.+..|+++|+.+.++.+....
T Consensus       320 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  399 (471)
T PRK10504        320 VVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ  399 (471)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence            6799999999999998888887766653   3344455567788888888888888999999999999999999999999


Q ss_pred             HhHHHHHHhhhh
Q psy7965          79 LGVLYVYCLGLS   90 (257)
Q Consensus        79 ~G~~~~~~~~~~   90 (257)
                      +|..+++.+.+.
T Consensus       400 ~g~~ig~~i~g~  411 (471)
T PRK10504        400 LSMSIGVTIAGL  411 (471)
T ss_pred             HHHHHHHHHHHH
Confidence            999988888766

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.13  E-value=3.8e-06  Score=68.93  Aligned_cols=88  Identities=10%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-HHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-MFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G   80 (257)
                      +.||+|+|+++..+.++.+++.+..+..++.+.+++..++.|++.+...+....++.+. +++++++..+..+ ....+|
T Consensus       263 l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  341 (382)
T PRK11128        263 LFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGS  341 (382)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHH
Confidence            57999999999999999998888888889999999999999999998888888888887 5666788888875 556677


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+++.+++.
T Consensus       342 ~~ig~~i~G~  351 (382)
T PRK11128        342 IAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHH
Confidence            7788877766

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.10  E-value=5.1e-05  Score=63.85  Aligned_cols=89  Identities=22%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             cccccCchhHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccch------------
Q psy7965           2 FADKFGRKPVILA-FCFPYILSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR------------   66 (257)
Q Consensus         2 l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r------------   66 (257)
                      ++|+-|+||-++. ...+..+.+....+.  ++++...+.-++.-++.+.....-.+++.|..+++++            
T Consensus        93 ~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~  172 (477)
T PF11700_consen   93 IADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGN  172 (477)
T ss_pred             HHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCC
Confidence            5798877776555 555555666666663  3455555666666678888888889999999999998            


Q ss_pred             --------------hhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          67 --------------GALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        67 --------------~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                                    ++..+.-.....+|.++..++...
T Consensus       173 ~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~  210 (477)
T PF11700_consen  173 ISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL  210 (477)
T ss_pred             CChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence                          888888777777777766555433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=98.10  E-value=3.2e-05  Score=65.07  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             ccc----ccCchhH-HHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhh
Q psy7965           2 FAD----KFGRKPV-ILAFCFPYILSWLLILFAQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGAL   69 (257)
Q Consensus         2 l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~   69 (257)
                      ++|    |+||||- ++++.+..+++..+.-..++      ...+.+.-.+..++.......-.++.+|+++ +++|.+.
T Consensus        68 ~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l  147 (460)
T PRK11462         68 LADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISL  147 (460)
T ss_pred             hhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHH
Confidence            466    4788765 45577777777766554442      3345555566677777777888889999987 7999999


Q ss_pred             hhHHHHHHHHhHHHHHHh
Q psy7965          70 GSFFQMFLTLGVLYVYCL   87 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~   87 (257)
                      .++...+..+|..+++.+
T Consensus       148 ~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        148 QSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999888887766555

>PRK09848 glucuronide transporter; Provisional

Probab=98.08  E-value=1.8e-05  Score=66.32  Aligned_cols=89  Identities=19%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCcc-------chhhhhhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS-------IRGALGSF   72 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-------~r~~~~~~   72 (257)
                      +.||+|+|+++.++.++..++.+...+.+  +.+.+++..++.|+|.+...+...+..+|..|.+       ++|...++
T Consensus       287 l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        287 MVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            57999999999999998888887776643  5677777888999999999999999999988754       35888899


Q ss_pred             HHHHHHHhHHHHHHhhhh
Q psy7965          73 FQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~   90 (257)
                      .+....+|..+++.+.+.
T Consensus       367 ~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888776554

>TIGR00897 2A0118 polyol permease family

Probab=98.08  E-value=7.7e-06  Score=67.57  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             cccccCchhHHH-HHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           2 FADKFGRKPVIL-AFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         2 l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      ++||+|||+.+. .+.+..+++.+....     .++.+...+..++.|++.+...+. ...+.|.. +++|+++.++.+.
T Consensus       280 l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~  357 (402)
T TIGR00897       280 VGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNL  357 (402)
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHH
Confidence            689999998764 333434443333322     235666777888888888775443 45566764 5689999999999


Q ss_pred             HHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ...+|..++|.+.+.     ||+..+++.+
T Consensus       358 ~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a  387 (402)
T TIGR00897       358 SAGLSAFLAPAIAVLFIGFFGAIGVVWIFA  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            999999999988766     7777776655

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10054 putative transporter; Provisional

Probab=98.08  E-value=8.2e-06  Score=67.27  Aligned_cols=98  Identities=12%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.||+++|+.+..+..+..++.+...+. ++.+.+++...+.|+|.+...|.....+.|..|++.|+.+.+..+ ...+|
T Consensus       267 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G  345 (395)
T PRK10054        267 RLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLG  345 (395)
T ss_pred             HHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHH
Confidence            4799999999999988888887777664 567777888899999998888888889999999999999988654 45578


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.+++.     +-+..|.+.+
T Consensus       346 ~~~Gp~~~G~l~~~~g~~~~~~~~~  370 (395)
T PRK10054        346 AAINPLVSGVILTTLPPWSLFVILA  370 (395)
T ss_pred             HHHHHHHHHHHHHHcChhhHHHHHH
Confidence            8888888776     4444444443

>PRK03699 putative transporter; Provisional

Probab=98.07  E-value=4e-06  Score=69.05  Aligned_cols=98  Identities=10%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+.+.....+..+...+....++...+.+..++.|++.+..++....+..|..| ++++...+.......+|.
T Consensus       264 l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~  342 (394)
T PRK03699        264 IVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT  342 (394)
T ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH
Confidence            6899999999998887777776666667777777777888999888888887777777775 446777888877888899


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|.+.+.     ||+..+++..
T Consensus       343 ~i~p~~~G~l~~~~g~~~~~~~~~  366 (394)
T PRK03699        343 MLTFVVTSPIVAHFGLQAALLTAN  366 (394)
T ss_pred             HHHHHHHHHHHHHhCchhhhhhhH
Confidence            888888766     7777766555

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.07  E-value=6.1e-06  Score=70.11  Aligned_cols=89  Identities=13%  Similarity=0.030  Sum_probs=76.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.||+|||+.+..+.++..++.+.....   ++.+...+..++.|+|.|...+.....+.+..|+++++.+.++.+....
T Consensus       318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  397 (495)
T PRK14995        318 LVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE  397 (495)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence            6799999999998888888777655442   3556667788999999999988888889999999999999999999999


Q ss_pred             HhHHHHHHhhhh
Q psy7965          79 LGVLYVYCLGLS   90 (257)
Q Consensus        79 ~G~~~~~~~~~~   90 (257)
                      +|..+|+.+.+.
T Consensus       398 lG~~~G~ai~g~  409 (495)
T PRK14995        398 LGAGLGIAIFGL  409 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888776

>KOG2816|consensus

Probab=98.06  E-value=1.5e-05  Score=66.39  Aligned_cols=88  Identities=22%  Similarity=0.362  Sum_probs=72.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--hccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGV--GTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~--~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      ++||+|||..+....+...+......+.. +|.++    +.|+  +.+.......++++|....++|....++.......
T Consensus        85 lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~  159 (463)
T KOG2816|consen   85 LSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGA  159 (463)
T ss_pred             hhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHH
Confidence            68999999999999999999888888765 44433    4443  34455777889999999999999999999999999


Q ss_pred             hHHHHHHhhhhhHHH
Q psy7965          80 GVLYVYCLGLSTYTV   94 (257)
Q Consensus        80 G~~~~~~~~~~~Wr~   94 (257)
                      +..++|.++...+|.
T Consensus       160 ~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  160 GLVIGPALGGYLVKF  174 (463)
T ss_pred             HHhHHHHHHHHHHHh
Confidence            999999999884444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.06  E-value=8e-06  Score=67.72  Aligned_cols=98  Identities=11%  Similarity=0.010  Sum_probs=59.9

Q ss_pred             CcccccCchhH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPV-ILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +++||+|||+. .....++..++..+....++......+-.+.+++.....+.......|.+|+++|+.+.++.+....+
T Consensus       301 ~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~  380 (412)
T TIGR02332       301 RHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNI  380 (412)
T ss_pred             HHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhh
Confidence            36899997775 33344344443322222222222222222333333333344456667889999999999999999999


Q ss_pred             hHHHHHHhhhh------hHHHHHhh
Q psy7965          80 GVLYVYCLGLS------TYTVIAIG   98 (257)
Q Consensus        80 G~~~~~~~~~~------~Wr~~~~~   98 (257)
                      |.+++|.+.+.      +|+..+.+
T Consensus       381 g~~~~p~~~g~i~~~~g~~~~~~~~  405 (412)
T TIGR02332       381 GSALSPFLIGILKDATGSFNSGLWF  405 (412)
T ss_pred             hhhhhhhhcccccccCCCCchhHHH
Confidence            99999877655      47776644

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.05  E-value=9.4e-06  Score=68.15  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             Cccccc--CchhHH-HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKF--GRKPVI-LAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      +++||+  |||+.. .....+..++.+...+  ..+.....++.++.|.+..........+..|.+|+++||++.++.+.
T Consensus       311 ~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  390 (452)
T PRK11273        311 WMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL  390 (452)
T ss_pred             HHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence            368999  555432 2222333333332222  23444444555555554333223334456799999999999999987


Q ss_pred             HHHHhHH-HHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTLGVL-YVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~G~~-~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ...+|.. .+|.+.+.     ||+..|.+..
T Consensus       391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~  421 (452)
T PRK11273        391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  421 (452)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence            7777654 46666554     7888886655

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.04  E-value=4e-06  Score=67.62  Aligned_cols=84  Identities=27%  Similarity=0.394  Sum_probs=71.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA---QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.||+|+|+..........+..+.....   ++....++.-++.|++.+...+....++.|..|+++||++.++.+...+
T Consensus       266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  345 (352)
T PF07690_consen  266 LSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS  345 (352)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            5799999888888777777766665543   3457777788889999999999999999999999999999999999999


Q ss_pred             HhHHHHH
Q psy7965          79 LGVLYVY   85 (257)
Q Consensus        79 ~G~~~~~   85 (257)
                      +|..++|
T Consensus       346 ~~~~igP  352 (352)
T PF07690_consen  346 LGGIIGP  352 (352)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHCC
Confidence            9999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.03  E-value=8.6e-06  Score=76.16  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+...+++.+..|+++||+++++.+....+|.
T Consensus       292 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~  371 (1146)
T PRK08633        292 LSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM  371 (1146)
T ss_pred             HhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence            67999999999999888888888888888888888999999999999888899999999999999999999988888888


Q ss_pred             HHHHHhhhh
Q psy7965          82 LYVYCLGLS   90 (257)
Q Consensus        82 ~~~~~~~~~   90 (257)
                      ++++.++..
T Consensus       372 ~~~~~~~~~  380 (1146)
T PRK08633        372 LLFLALTTL  380 (1146)
T ss_pred             HHHHHHHHH
Confidence            666665544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.02  E-value=1e-05  Score=66.97  Aligned_cols=88  Identities=15%  Similarity=0.076  Sum_probs=69.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      ++||+|||+.+.++.++..++.++....     ++.+.+.+..++.|++.+...+........ .++++||+..+..+..
T Consensus       274 l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~  352 (406)
T PRK15402        274 LTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGML  352 (406)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHH
Confidence            5799999999999888887777766653     246667788889999998877766555443 3458999999999999


Q ss_pred             HHHhHHHHHHhhhh
Q psy7965          77 LTLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~~~G~~~~~~~~~~   90 (257)
                      ..+|..+++.+...
T Consensus       353 ~~~~~~~g~~~~~~  366 (406)
T PRK15402        353 SMLIFTVGIELSKH  366 (406)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98888888888776

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.00  E-value=2.9e-06  Score=71.69  Aligned_cols=99  Identities=8%  Similarity=-0.065  Sum_probs=64.8

Q ss_pred             CcccccCch-------hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           1 PFADKFGRK-------PVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         1 ~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      +++||+|||       ....+..++.++..++....++.+...+..++.+++.+........++.|.. +++||...++.
T Consensus       310 ~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~  388 (476)
T PLN00028        310 YLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLT  388 (476)
T ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhh
Confidence            368999875       2333333333344444445556555555666667666555566666677765 47899999999


Q ss_pred             HHHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965          74 QMFLTLGVLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      +.+..+|..+++.+...    +|+..|.+.+
T Consensus       389 ~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~  419 (476)
T PLN00028        389 GAGGNVGAVLTQLLFFTGSSYSTETGISLMG  419 (476)
T ss_pred             hccccHHHHHHHHHHHhcCCccHhhHHHHHH
Confidence            88888888888777543    5887776665

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.99  E-value=1.2e-05  Score=66.98  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQN--IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +.||+|||+.+..+.++..+..+.....++  ...+....+..+++..+..+..+.++.|.+|+++|++++++......+
T Consensus       289 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  368 (426)
T PRK12307        289 CADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT  368 (426)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence            689999999999888777666555443322  222222222222222333445567789999999999999999888888


Q ss_pred             hHHHHHHhhhh
Q psy7965          80 GVLYVYCLGLS   90 (257)
Q Consensus        80 G~~~~~~~~~~   90 (257)
                      |..++|.+.+.
T Consensus       369 ~~~~gp~~~g~  379 (426)
T PRK12307        369 SGTFNSMAATW  379 (426)
T ss_pred             HHHHHHHHHHH
Confidence            99999888766

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.95  E-value=1.5e-05  Score=65.61  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCC-ccchhhhhhHHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-SSIRGALGSFFQMFLTL   79 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~   79 (257)
                      +.||+|||+.+..+..+..++..+....+ +...+  .-.+.|++.+...+.......|..+ +++|++..++.+....+
T Consensus       263 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  340 (393)
T PRK09705        263 MARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFI  340 (393)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            68999999999988877777766554323 22222  2346688888887877666667775 67899999999988888


Q ss_pred             hHHHHHHhhhh------hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      +..++|.+.++      +|+..+.+..
T Consensus       341 ~~~~gp~~~G~l~~~~g~~~~~~~~~~  367 (393)
T PRK09705        341 IAGLAPWFSGVLRSISGNYLMDWAFHA  367 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence            88888888776      3555555543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.95  E-value=1.3e-05  Score=65.90  Aligned_cols=99  Identities=15%  Similarity=-0.037  Sum_probs=70.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHhhhccccccccceeeeccCCc-cchhhhhhHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRGALGSFFQ   74 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~   74 (257)
                      +.||+|+|+.+..+.++.++..+....      .++...+.....+.+++.|...+.....+.+..++ +++++.+++.+
T Consensus       267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  346 (390)
T TIGR02718       267 LVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQ  346 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            679999999998877766443333221      12333444555666677777777777777777776 88999999999


Q ss_pred             HHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          75 MFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        75 ~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ...++|..+++.+++.     |++..|...+
T Consensus       347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~  377 (390)
T TIGR02718       347 STRDLGELIASSIAGYLTDRFGYAGGFLSGT  377 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            9999999999999876     6666665544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.95  E-value=1.4e-05  Score=64.97  Aligned_cols=88  Identities=23%  Similarity=0.420  Sum_probs=74.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++|..|-|++++++.+...+...+..+.++...+-+..++-|++.+. ..+-.+|+-...|+++-.++.+...+...+|.
T Consensus        64 ltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~  142 (412)
T PF01770_consen   64 LTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGR  142 (412)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999998887 56667888888899888888888777777776


Q ss_pred             HHHHHhhhh
Q psy7965          82 LYVYCLGLS   90 (257)
Q Consensus        82 ~~~~~~~~~   90 (257)
                      .++.+++-.
T Consensus       143 ~~s~~lgQl  151 (412)
T PF01770_consen  143 FISSLLGQL  151 (412)
T ss_pred             HHHHHHHHH
Confidence            666666544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.95  E-value=2.4e-05  Score=65.29  Aligned_cols=89  Identities=19%  Similarity=0.347  Sum_probs=76.3

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGS   71 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~   71 (257)
                      +++||+|+|+++..+.++.+++.++..+.+  |.+.+++.-.+.|++.+...+...++++|..+.       ++.|...+
T Consensus       282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            368999999999999999999999988876  899999999999999999999999999999874       33477777


Q ss_pred             HHHHHHHHhHHHHHHhhh
Q psy7965          72 FFQMFLTLGVLYVYCLGL   89 (257)
Q Consensus        72 ~~~~~~~~G~~~~~~~~~   89 (257)
                      ......-+|..+++.+..
T Consensus       362 ~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             hhhhhhHHHHHHHHHHHH
Confidence            777777777777776554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.92  E-value=1.7e-05  Score=67.43  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.+|+++++.+..+.++.+++.+..+++++.+..+++.++.|++.....+...+.+.+..|++.||++++++++....+.
T Consensus       277 l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~  356 (524)
T PF05977_consen  277 LRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM  356 (524)
T ss_pred             hhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence            45788888999999999999999999999999999999999999999888889999999999999999999988877777


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+|.++.+.     |-+..+.+.+
T Consensus       357 ~lGsll~G~la~~~g~~~al~~a~  380 (524)
T PF05977_consen  357 PLGSLLWGFLADHFGVRTALLIAG  380 (524)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHH
Confidence            777777666     5565555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=97.90  E-value=1.4e-05  Score=66.82  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=57.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHH-HH---HhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH-H
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLL-IL---FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ-M   75 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~   75 (257)
                      +++||+|||+.+..+.++..+..+. ..   ..++...+....++.|++.+...+....++.|.+|+++|+...++.+ .
T Consensus       296 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~  375 (434)
T PRK15075        296 ALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSL  375 (434)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHH
Confidence            3689999999988765544332221 11   12334444444556666666666666778999999999999999854 3


Q ss_pred             HHHHhHHHHHHhhhh
Q psy7965          76 FLTLGVLYVYCLGLS   90 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~   90 (257)
                      +..++..++|.+.+.
T Consensus       376 ~~~~~g~~~p~~~g~  390 (434)
T PRK15075        376 ATAIFGGFTPAISTW  390 (434)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            444445556666544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.90  E-value=8.6e-05  Score=62.78  Aligned_cols=89  Identities=12%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGAL   69 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~   69 (257)
                      ++||+|+|+.+.++.++..++.+....     .++.+.+++.-++.|++.+...+...++++|..+       .++.|..
T Consensus       289 l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~  368 (473)
T PRK10429        289 LVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIA  368 (473)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHH
Confidence            679999999999888877766655432     3456677777788999999999988999999966       3334557


Q ss_pred             hhHHHHHHHHhHHHHHHhhhh
Q psy7965          70 GSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      .+......-+|..+++.+.+.
T Consensus       369 ~s~~~~~~K~~~al~~~i~g~  389 (473)
T PRK10429        369 YSVQTMVVKGGSAFAAFFIGV  389 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777776666544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.88  E-value=2.8e-05  Score=66.12  Aligned_cols=87  Identities=7%  Similarity=0.064  Sum_probs=75.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQN---------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      +.||++.++.+.++.++.+++.+..+...+         .+.+...+++.|+|++...|....++.+..|++.||++++.
T Consensus       343 l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~  422 (500)
T PRK09584        343 MGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS  422 (500)
T ss_pred             hCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence            456777778899999999999988877655         45788899999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhh
Q psy7965          73 FQMFLTLGVLYVYCLG   88 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~   88 (257)
                      +.....+|..++..+.
T Consensus       423 ~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        423 WFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888878777766554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.87  E-value=4.6e-05  Score=53.76  Aligned_cols=88  Identities=16%  Similarity=0.226  Sum_probs=75.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.+++|.|+.++++.++..+-.... +-++.+.++.+-.+.|++.+..++....++.+..++++|++..+++-.....+.
T Consensus        60 iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~  138 (156)
T PF05978_consen   60 IVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSL  138 (156)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHH
Confidence            3578999999999999988655543 457888999999999999999999999999999999999999998877777777


Q ss_pred             HHHHHhhhh
Q psy7965          82 LYVYCLGLS   90 (257)
Q Consensus        82 ~~~~~~~~~   90 (257)
                      ++|.++...
T Consensus       139 i~G~~~~~~  147 (156)
T PF05978_consen  139 IFGNLFLFF  147 (156)
T ss_pred             HHHHHHHHH
Confidence            777766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.84  E-value=2.7e-05  Score=65.77  Aligned_cols=88  Identities=11%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHH
Q psy7965          13 LAFCFPYILSWLLILF---------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLY   83 (257)
Q Consensus        13 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~   83 (257)
                      .++.++.+++.+..++         ..|++.+.+..++.|+|+....|....++.|..|++.||++++++.....+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888777664         3588999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhh-----hHHHHHhhcC
Q psy7965          84 VYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        84 ~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++.+...     +|...+...+
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~  454 (475)
T TIGR00924       433 GGYLATFGAVPQGVTGVFGKIG  454 (475)
T ss_pred             HHHHHHHHhcccchhhHHHHHH
Confidence            8887665     4555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.84  E-value=3.1e-05  Score=63.73  Aligned_cols=89  Identities=21%  Similarity=0.360  Sum_probs=74.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-hhHHHH----HHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-QNIYML----FVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM-   75 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-   75 (257)
                      +..|+|.|+++.++.+..++=..+.+.. ++.+..    +....++|+..|........++.+..|++.|++++++++. 
T Consensus       266 ~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~  345 (400)
T PF03825_consen  266 FLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSAL  345 (400)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            3578999999999999999988888876 554443    3335679999999999999999999999999999999765 


Q ss_pred             HHHHhHHHHHHhhhh
Q psy7965          76 FLTLGVLYVYCLGLS   90 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~   90 (257)
                      ..++|..++..+++.
T Consensus       346 ~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  346 SFGLGGAIGSLIGGW  360 (400)
T ss_pred             HhhHHHHHHHHHHHH
Confidence            567899998888877

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.84  E-value=2.2e-05  Score=64.11  Aligned_cols=89  Identities=18%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             cccccCc---hhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGR---KPVILA-FCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||..|   |+.... ..++.++.....+...+.....+.-.+.|++.....+....+.+|.+|++.|+++.++.+...
T Consensus       246 ~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g  325 (368)
T TIGR00903       246 IPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTS  325 (368)
T ss_pred             hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHH
Confidence            4676654   343332 444444444444444444444455566777777777778889999999999999999999999


Q ss_pred             HHhHHHHHHhhhh
Q psy7965          78 TLGVLYVYCLGLS   90 (257)
Q Consensus        78 ~~G~~~~~~~~~~   90 (257)
                      .+|...+|.+...
T Consensus       326 ~~~~~~~~~~~~~  338 (368)
T TIGR00903       326 RAISVALALAAML  338 (368)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888777644

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.83  E-value=1.5e-05  Score=64.80  Aligned_cols=66  Identities=20%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHH
Q psy7965          30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVI   95 (257)
Q Consensus        30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~   95 (257)
                      .+.....+..++.|+......+....++.|..|+++|+++.++.+....+|..+++.+.+.     ||+..
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       308 ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            3455566666777776666566667788999999999999999999999999988887766     66654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.83  E-value=6.1e-05  Score=62.09  Aligned_cols=88  Identities=13%  Similarity=0.018  Sum_probs=68.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc-hhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI-RGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G   80 (257)
                      +.||.++|+++..+. +.++..+...+.++.+...+..++.|++.+...+...+.+.|..|+|+ +|++.++.+....+|
T Consensus       264 l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~  342 (393)
T PRK11195        264 LVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLA  342 (393)
T ss_pred             HhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHH
Confidence            468889888887775 344445555666777777788889999999888888888888866665 799999999888888


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..++..+...
T Consensus       343 ~~~~~~~~~~  352 (393)
T PRK11195        343 MLLMLGLYSL  352 (393)
T ss_pred             HHHHHHHHHH
Confidence            8877776655

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.81  E-value=2.8e-05  Score=64.96  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHH--H--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLIL--F--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +++||+|||+.+..+.++.++..+...  .  .++....+..-.+.++..+...+....+++|++|++.|+.+.++.+..
T Consensus       301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            368999999988776655443332221  1  122222222222222333333445667889999999999999997654


Q ss_pred             HH
Q psy7965          77 LT   78 (257)
Q Consensus        77 ~~   78 (257)
                      ..
T Consensus       381 g~  382 (432)
T PRK10406        381 AN  382 (432)
T ss_pred             HH
Confidence            33

>KOG0569|consensus

Probab=97.81  E-value=0.00024  Score=59.37  Aligned_cols=88  Identities=23%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh---hHH------HHHHHHHHHh--hhccccccccceeeeccCCccchhhhh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ---NIY------MLFVARFIAG--VGTGGLCAIIPMFIGEIAESSIRGALG   70 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~~~~~r~l~G--~~~g~~~~~~~~~i~e~~~~~~r~~~~   70 (257)
                      +.||+|||+.++.+..+..+..+++...-   +..      ..+++.++..  ++.|. .|..+-+.+|.+|++.|..++
T Consensus       328 lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~  406 (485)
T KOG0569|consen  328 LIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQ  406 (485)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHH
Confidence            67999999999999999988888777632   111      1223333333  33332 678888999999999999999


Q ss_pred             hHHHHHHHHhHHHHHHhhhh
Q psy7965          71 SFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        71 ~~~~~~~~~G~~~~~~~~~~   90 (257)
                      ++......+..++....-..
T Consensus       407 s~~~~~~w~~~fiv~~~fp~  426 (485)
T KOG0569|consen  407 SVATAVNWLSNFIVGFAFPP  426 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99888887777665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=1.6e-05  Score=64.17  Aligned_cols=90  Identities=14%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +|.||+|.|+++..+.++..+.++...+...-..+.++-++.|+..|..++.+-++.++..|++|-+...++++...-.+
T Consensus       310 ~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~  389 (438)
T COG2270         310 FLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAA  389 (438)
T ss_pred             HHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHH
Confidence            36899999999999999999999988888777788888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..++|.+-..
T Consensus       390 S~~gp~lv~v  399 (438)
T COG2270         390 SFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHH
Confidence            9999988655

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.74  E-value=4.6e-05  Score=64.69  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLI---LFA-QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||+|||+.+.++.++.++..+..   +.. ++...+.+.-++..+..|...+...++..+..+++.+++..++.+...
T Consensus       282 L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~  361 (491)
T PRK11010        282 LMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALS  361 (491)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            6899999998887666655544332   232 344445555556555455455566788888999999999999999888


Q ss_pred             HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+|..+++.+.+.     ||+..|.+..
T Consensus       362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~  389 (491)
T PRK11010        362 AVGRVYVGPVAGWFVEAHGWPTFYLFSV  389 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            8887766555554     7888777655

>PRK09848 glucuronide transporter; Provisional

Probab=97.73  E-value=0.00022  Score=59.90  Aligned_cols=88  Identities=13%  Similarity=0.142  Sum_probs=51.2

Q ss_pred             Cccccc----CchhHH-HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhccccccccceeeeccCCc-cchh
Q psy7965           1 PFADKF----GRKPVI-LAFCFPYILSWLLILFAQ-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-SIRG   67 (257)
Q Consensus         1 ~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~   67 (257)
                      +++||.    |||+.. .++.+...+...+....+       .....++...+.+++.+...+...++..|..+. ++|.
T Consensus        66 ~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~  145 (448)
T PRK09848         66 RVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRA  145 (448)
T ss_pred             eeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHH
Confidence            367885    777754 556555554444432111       122344455667777877777777777777654 6788


Q ss_pred             hhhhHHHHHHH-----HhHHHHHHhh
Q psy7965          68 ALGSFFQMFLT-----LGVLYVYCLG   88 (257)
Q Consensus        68 ~~~~~~~~~~~-----~G~~~~~~~~   88 (257)
                      +..++-+.+.+     ++..++|.+.
T Consensus       146 ~~~~~r~~~~~~~~~~~~~~~~p~i~  171 (448)
T PRK09848        146 RLGAARGIAASLTFVCLAFLIGPSIK  171 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87776554333     4445555554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.71  E-value=0.00011  Score=60.24  Aligned_cols=98  Identities=18%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccccccccce-eeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF-AQNIYMLFVARFIAGVGTGGLCAIIPM-FIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      ++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++.....+.... ...+..+++.++...  .+....
T Consensus       257 ~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  334 (382)
T PRK10091        257 RLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFN  334 (382)
T ss_pred             eeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHH
Confidence            4689999999999988888887765543 455556666666666665544443333 334444555555543  355667


Q ss_pred             HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      +|..++|.+++.      +|+..+.+.+
T Consensus       335 ~g~~~Gp~~~G~l~~~~~~~~~~~~~~~  362 (382)
T PRK10091        335 LGSAIGAYCGGMMLTLGLAYNYVALPAA  362 (382)
T ss_pred             HHHHHHHHHhHHHHHcccCcchHHHHHH
Confidence            888888877765      5777766654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.68  E-value=3.2e-05  Score=63.19  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G   80 (257)
                      +.+|+|.|+.++++..++.+=.+.+++++|.+.+.+.+.+.|+-.+........|+++.+|++..++...+ .+....+|
T Consensus       282 li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  282 LINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG  361 (412)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred             HHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999988888777 46777888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+.+.+++.     |.+..|++.+
T Consensus       362 ~~i~s~~~G~lyd~~G~~~tylimg  386 (412)
T PF01306_consen  362 IIILSPLAGYLYDRIGFQHTYLIMG  386 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHhhHhhcCcHHHHHHHH
Confidence            8777777666     7777776666

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.66  E-value=5e-05  Score=63.48  Aligned_cols=66  Identities=20%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          35 LFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        35 ~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .....+..|++...........+.|.+|+++|+++.++.+....+|..++|.+.+.     +|+..|.+.+
T Consensus       340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~  410 (434)
T PRK11663        340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVIS  410 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHH
Confidence            33344444543332222334567899999999999999999999999999877766     7888877665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.65  E-value=0.00012  Score=61.08  Aligned_cols=99  Identities=21%  Similarity=0.190  Sum_probs=70.8

Q ss_pred             ccccc-----CchhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhccccccccceeeeccCC--ccchhhhh
Q psy7965           2 FADKF-----GRKPVILAFCFPYILSWLLILFA----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE--SSIRGALG   70 (257)
Q Consensus         2 l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~   70 (257)
                      ++|-+     .||+-++++.++..++.+..+..    .+.....+.-++..+|........-+.+.|...  ++.||...
T Consensus        47 lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq  126 (433)
T PF03092_consen   47 LSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ  126 (433)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence            46655     35666666777776666655553    346666677788889999999999999999973  34477888


Q ss_pred             hHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          71 SFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        71 ~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +.......+|.+++..+++.     +.|..|.+.+
T Consensus       127 S~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen  127 SFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            88888888888888877766     5666655544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.63  E-value=0.00019  Score=58.70  Aligned_cols=88  Identities=19%  Similarity=0.313  Sum_probs=66.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +.||+|||+.+..+..+..++.++....     ++...+.....+.|++.+...+.......|..| ++|+++.++.+..
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  343 (385)
T TIGR00710       265 FIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTL  343 (385)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence            5799999999998888877777666553     234455666788899999888888888888886 6789999987655


Q ss_pred             H-HHhHHHHHHhhhh
Q psy7965          77 L-TLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~-~~G~~~~~~~~~~   90 (257)
                      . ..|.+.++.++..
T Consensus       344 ~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       344 RLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            5 4566777766633

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09669 putative symporter YagG; Provisional

Probab=97.62  E-value=0.0001  Score=61.84  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGSF   72 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~   72 (257)
                      ++||+|+|+.+.++.++..+......+  .++.+.+++..++.|++.+...+...+.++|..+.       +..|...+.
T Consensus       287 l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~  366 (444)
T PRK09669        287 LLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFST  366 (444)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHH
Confidence            689999999999887766654443333  35677788888999999999999999999998862       234556777


Q ss_pred             HHHHHHHhHHHHHHhhhh
Q psy7965          73 FQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~   90 (257)
                      ......+|..+++.+++.
T Consensus       367 ~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        367 NLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777778888888777654

>TIGR00896 CynX cyanate transporter

Probab=97.62  E-value=0.00011  Score=59.51  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             ccccc-CchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccC-CccchhhhhhHHHHHHHH
Q psy7965           2 FADKF-GRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA-ESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~   79 (257)
                      ++||+ +||+.+..+.++.+++.+...+.++..... .-.+.|++.|...+.....+.+.. ++++++...++.+....+
T Consensus       255 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  333 (355)
T TIGR00896       255 LARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYL  333 (355)
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            57999 567777778788887777666655433322 346789999998888777666554 456778888888888888


Q ss_pred             hHHHHHHhhhh
Q psy7965          80 GVLYVYCLGLS   90 (257)
Q Consensus        80 G~~~~~~~~~~   90 (257)
                      |..++|.+.+.
T Consensus       334 ~~~~gp~~~G~  344 (355)
T TIGR00896       334 LAALGPLFVGV  344 (355)
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.56  E-value=0.00019  Score=59.17  Aligned_cols=97  Identities=11%  Similarity=-0.023  Sum_probs=67.8

Q ss_pred             cccccCchhHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFP-YILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.+...+....++.+..| +++++..+.......+|
T Consensus       275 l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg  352 (394)
T PRK10213        275 ILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLA  352 (394)
T ss_pred             HHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHH
Confidence            457754 4444444444 34444444556677788888899999999988888888888887 55677777777777888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+++.     |++..+...+
T Consensus       353 ~~~G~~l~G~l~~~~g~~~~~~~~~  377 (394)
T PRK10213        353 NTCGAAIGGYALDNIGLTSPLMLSG  377 (394)
T ss_pred             HHHHHHHHHHHHhccChhhHHHHHH
Confidence            8888888776     5665555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.53  E-value=0.00015  Score=60.01  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHH---HHh-hhHHHHHHHH----HHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLI---LFA-QNIYMLFVAR----FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r----~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      +.||+|||+.+..+.++..+..+..   +.. ++.+.+.+.-    +..|++.+...+....++.+.+|.++++...+..
T Consensus       269 l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (402)
T PRK11902        269 LMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALA  348 (402)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            5799999999887777666554433   333 3455554444    4566777777888888999999887766544443


Q ss_pred             HHHHHHhHHHHHHhhhh-hHHHHHhhcC
Q psy7965          74 QMFLTLGVLYVYCLGLS-TYTVIAIGCL  100 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~-~Wr~~~~~~~  100 (257)
                      ..+...+..++..+... ||+..|...+
T Consensus       349 ~l~~~~~~~~~G~l~~~~G~~~~f~~~~  376 (402)
T PRK11902        349 SVGRVYVGPTSGYLVEAYGWPGFYLMTV  376 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            33332222222222222 8998887766

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.50  E-value=0.00024  Score=59.33  Aligned_cols=87  Identities=16%  Similarity=0.115  Sum_probs=57.4

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH-h-----hhHHHHHHHHHHHhhhccccccccceeeeccCCc-----------
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF-A-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-----------   63 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-----------   63 (257)
                      +++||+|+|+++.++.+...+....... .     .+.+.+.+..+...++.|......+.++.+++|+           
T Consensus       308 ~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~  387 (462)
T PRK15034        308 AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG  387 (462)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence            4799999999999988877777644222 1     2456555555554444555455556666677764           


Q ss_pred             ----------cchhhhhhHHHHHHHHhHHHHHHh
Q psy7965          64 ----------SIRGALGSFFQMFLTLGVLYVYCL   87 (257)
Q Consensus        64 ----------~~r~~~~~~~~~~~~~G~~~~~~~   87 (257)
                                ++-|.+.++......+|.++.|.+
T Consensus       388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~  421 (462)
T PRK15034        388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQA  421 (462)
T ss_pred             chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence                      145677777788888877777754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.48  E-value=0.00054  Score=56.52  Aligned_cols=81  Identities=19%  Similarity=0.274  Sum_probs=56.4

Q ss_pred             cccccC-chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFG-RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      ++||.+ +|+.+.++.++.++........++++.+++..++..+......|...++..+...  +++.-.+-.-...++|
T Consensus        60 ~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiG  137 (400)
T PF03825_consen   60 IADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIG  137 (400)
T ss_pred             HHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHH
Confidence            689985 6777777777777777777778889888888888888888778877777777765  2333333334444444


Q ss_pred             HHHH
Q psy7965          81 VLYV   84 (257)
Q Consensus        81 ~~~~   84 (257)
                      -+++
T Consensus       138 f~~~  141 (400)
T PF03825_consen  138 FIVA  141 (400)
T ss_pred             HHHH
Confidence            4444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.48  E-value=0.00012  Score=68.62  Aligned_cols=89  Identities=9%  Similarity=-0.082  Sum_probs=70.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHhhhccccccccceeeeccC
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA--------------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIA   61 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~   61 (257)
                      ++|+.++++.+..+.++.+++.+...+.                    ++.+.+.++.++.|++.+...+...+++.+.+
T Consensus       284 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  363 (1140)
T PRK06814        284 LSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWA  363 (1140)
T ss_pred             HhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence            4567776666666666665555544442                    66777888889999999999999999999999


Q ss_pred             CccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          62 ESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        62 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      |+++||++++..+....+|..+++++.+.
T Consensus       364 p~~~~G~v~g~~~~~~~~~~~ig~~~~g~  392 (1140)
T PRK06814        364 NPAHRARVIAANNVLNAAFMVAGTIILAL  392 (1140)
T ss_pred             CcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888877776554

>KOG2504|consensus

Probab=97.45  E-value=0.00015  Score=61.48  Aligned_cols=100  Identities=19%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             CcccccC--chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           1 PFADKFG--RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         1 ~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +++|+..  ++.+..++++..+++.+...++++++.+...-.+.|+..|.........+.|....++-..+.++.....+
T Consensus       355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g  434 (509)
T KOG2504|consen  355 LLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG  434 (509)
T ss_pred             hhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence            4678887  55567778888899999999999999999999999999999999988999999999999999999999999


Q ss_pred             HhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      ++.+++|.+++.      +|...|+..+
T Consensus       435 i~~l~gpPiag~~~d~tg~Y~~~f~~~g  462 (509)
T KOG2504|consen  435 IGALVGPPIAGLLYDITGNYDHAFYFCG  462 (509)
T ss_pred             HHHHcCcccceeeeeccCCeeeehhhcC
Confidence            999999999887      5888887777

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.0026  Score=52.92  Aligned_cols=86  Identities=26%  Similarity=0.404  Sum_probs=66.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCc-------cchhhhhhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAES-------SIRGALGSF   72 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~   72 (257)
                      +.+|+|+|+++..+.++..++.++.-+.+  +....++...+.++|.+...+...+.++|..+-       ++-|...+.
T Consensus       295 L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~  374 (467)
T COG2211         295 LVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG  374 (467)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence            67899999999999999999999988865  688888888999999999999999999988753       223444555


Q ss_pred             HHHHHHHhHHHHHHh
Q psy7965          73 FQMFLTLGVLYVYCL   87 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~   87 (257)
                      .....=+|..++..+
T Consensus       375 ~tF~~K~g~ala~~~  389 (467)
T COG2211         375 MTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444455544433

>TIGR01272 gluP glucose/galactose transporter

Probab=97.35  E-value=0.00027  Score=56.33  Aligned_cols=93  Identities=9%  Similarity=-0.058  Sum_probs=67.1

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|+|+++.++.++..++.++....++... ..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|.
T Consensus       201 l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg  277 (310)
T TIGR01272       201 VMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGG  277 (310)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcc
Confidence            679999999999888888887766666554333 34566899999999999999888888754 45566665 4556787


Q ss_pred             HHHHHhhhh-----hHHHHHh
Q psy7965          82 LYVYCLGLS-----TYTVIAI   97 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~   97 (257)
                      .+.|.+-+.     +-+..++
T Consensus       278 ~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       278 AIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             hHHHHHHHHHHHhccchHHHH
Confidence            888765444     5555544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0013  Score=53.51  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             cccccCchhH-HHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPV-ILAFCFPYILSWLLILFAQN---IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      .+|..|+||- +-+...+..+++....++++   ++..++.-.+..++.......-.+++.+..++++-++..++-....
T Consensus        81 iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~g  160 (438)
T COG2270          81 IADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALG  160 (438)
T ss_pred             hhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccc
Confidence            4788877665 44566666777777777655   4455555577888888888888999999999998888877765555


Q ss_pred             HHhHHHHHHh
Q psy7965          78 TLGVLYVYCL   87 (257)
Q Consensus        78 ~~G~~~~~~~   87 (257)
                      .+|.++.-+.
T Consensus       161 ylgs~i~li~  170 (438)
T COG2270         161 YLGSVILLIF  170 (438)
T ss_pred             cccchHHHHH
Confidence            6665554444

>PRK11462 putative transporter; Provisional

Probab=97.31  E-value=0.0026  Score=53.70  Aligned_cols=90  Identities=17%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCC-------ccchhhhhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE-------SSIRGALGS   71 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~r~~~~~   71 (257)
                      +++||+|+|+++..+..+..+..++..+.+  +...+.+.-++.|++.+...+...++++|..+       .+..|...+
T Consensus       285 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a  364 (460)
T PRK11462        285 PLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFA  364 (460)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHH
Confidence            368999999988765554444444433322  23344455566787777766666777777766       233344455


Q ss_pred             HHHHHHHHhHHHHHHhhhh
Q psy7965          72 FFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        72 ~~~~~~~~G~~~~~~~~~~   90 (257)
                      ......-+|..+++.+.+.
T Consensus       365 ~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        365 GTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555566666666555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.26  E-value=0.00051  Score=52.55  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA-------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQ   74 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~   74 (257)
                      +.|++|+|.++.++.+...+|......+       .+++.+.+..++.|.+.+...+.......+.+| ++||.+.++.-
T Consensus        59 l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk  137 (250)
T PF06813_consen   59 LYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILK  137 (250)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhh
Confidence            5799999999999999999998887663       367888888888888887777777777778897 57999999998


Q ss_pred             HHHHHhHHHHHHhhh
Q psy7965          75 MFLTLGVLYVYCLGL   89 (257)
Q Consensus        75 ~~~~~G~~~~~~~~~   89 (257)
                      ....++..+-..+..
T Consensus       138 ~~~GLSaai~t~i~~  152 (250)
T PF06813_consen  138 GFFGLSAAIFTQIYS  152 (250)
T ss_pred             HHHHhHHHHHHHHHH
Confidence            888887766555543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.23  E-value=0.00044  Score=56.23  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHH--hh--hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILF--AQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +++||+|||+.+..+..+...+..+..+  .+  +...+.+.-.+.+++.|.........+.|..| +++|.+.++.+..
T Consensus       283 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       283 AISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             hHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence            3689999999888777766666555544  22  55555555555666666666667777888886 6899999998877


Q ss_pred             HHHh
Q psy7965          77 LTLG   80 (257)
Q Consensus        77 ~~~G   80 (257)
                      ..+|
T Consensus       362 ~~~g  365 (366)
T TIGR00886       362 GNLG  365 (366)
T ss_pred             ccCC
Confidence            6665

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00079  Score=54.54  Aligned_cols=95  Identities=21%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh-------hHH----HHHHHHHHHhhhccccccccceeeeccCCccchhhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-------NIY----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGAL   69 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~   69 (257)
                      +++||+|.+|++.+....++++..+.+..+       +..    .++...+..|+|+|..    +..+..++|+ +-|.+
T Consensus       276 ~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v  350 (417)
T COG2223         276 WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAV  350 (417)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHH
Confidence            589999999999999988888888877753       333    3555556666666654    4556666654 66889


Q ss_pred             hhHHHHHHHHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          70 GSFFQMFLTLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      .++......+|....|..-..      .++..|++..
T Consensus       351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~  387 (417)
T COG2223         351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLL  387 (417)
T ss_pred             HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHH
Confidence            999999999987766655444      4666665554

>KOG3762|consensus

Probab=97.20  E-value=5.8e-05  Score=62.79  Aligned_cols=99  Identities=17%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-HHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM-FLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G   80 (257)
                      +.+|+|+-+++..++.+..+=.+..+..+|.|..+..-+++|+..+..+..+.+|+++..||+.|..+.++.+. ...+|
T Consensus       429 lI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG  508 (618)
T KOG3762|consen  429 LIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLG  508 (618)
T ss_pred             HHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999998754 33455


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      --+|.++++.     +=|..|.+.+
T Consensus       509 ~g~GslIGG~~v~~fg~~ttf~~~g  533 (618)
T KOG3762|consen  509 KGLGSLIGGFVVERFGARTTFRIFG  533 (618)
T ss_pred             cchhhhhhhhhheeehhHHHHHHHH
Confidence            5555555544     5555555554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.18  E-value=0.0012  Score=54.01  Aligned_cols=88  Identities=11%  Similarity=0.070  Sum_probs=56.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH-H
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLIL---F-AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM-F   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~   76 (257)
                      +.||+|||+.+..+..+..+..+...   . ..+.+...++-.+.+.+.+...+....++.|..| ++|+.+.+..+. .
T Consensus       253 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  331 (377)
T PRK11102        253 FVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLR  331 (377)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence            57999999999888766544333222   2 2244555555545555555555555566777766 789999988654 3


Q ss_pred             HHHhHHHHHHhhhh
Q psy7965          77 LTLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~~~G~~~~~~~~~~   90 (257)
                      ..+|..+++.++..
T Consensus       332 ~~~g~~~g~~~~~~  345 (377)
T PRK11102        332 FGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHhc
Confidence            55777777777654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.18  E-value=0.00045  Score=58.66  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             cccccCchhH-------HHHHHHHHHHHHHHHH-----Hh-----hhHHHHHHHHHHHhhhccccccccceeeeccCCcc
Q psy7965           2 FADKFGRKPV-------ILAFCFPYILSWLLIL-----FA-----QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS   64 (257)
Q Consensus         2 l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~   64 (257)
                      +.||+|||+.       +.++.++.+++.+..+     .+     .+.+.+...-++.|+|++...+....++.+..|++
T Consensus       332 l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~  411 (489)
T PRK10207        332 IYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH  411 (489)
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence            4688988873       6677777776654321     21     24677778889999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHhHHHHHHhh
Q psy7965          65 IRGALGSFFQMFLTLGVLYVYCLG   88 (257)
Q Consensus        65 ~r~~~~~~~~~~~~~G~~~~~~~~   88 (257)
                      .+|.+++++.....+|..++..++
T Consensus       412 ~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        412 LMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888887765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.15  E-value=0.0011  Score=54.63  Aligned_cols=90  Identities=10%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G   80 (257)
                      +.||+|||+.+..+.++..++.+...+.++.......-.+.+.+.+...+..  ...+..|.++| +.+.++...+..+|
T Consensus       262 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g  339 (392)
T PRK10473        262 ALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCG  339 (392)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHH
Confidence            6799999999999999888888887776655544444444444443333322  22344454444 44555555555666


Q ss_pred             HHHHHHhhhh-hHH
Q psy7965          81 VLYVYCLGLS-TYT   93 (257)
Q Consensus        81 ~~~~~~~~~~-~Wr   93 (257)
                      ..+++.+... ++.
T Consensus       340 ~~~~~~l~~~~g~~  353 (392)
T PRK10473        340 SSLWIWLAAVLGIS  353 (392)
T ss_pred             HHHHHHHHHHhccc
Confidence            6666555544 443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.13  E-value=0.00034  Score=58.58  Aligned_cols=69  Identities=14%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh-HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          32 IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG-VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        32 ~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G-~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+...+..+..|++.............|.+|+++|+.+.++.+....+| .+++|.+.+.     ||...+.+..
T Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~  419 (438)
T TIGR00712       345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  419 (438)
T ss_pred             hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHH
Confidence            3333344445555432222222345679999999999999998776665 4567766654     6777665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=97.12  E-value=0.0011  Score=54.79  Aligned_cols=88  Identities=10%  Similarity=0.095  Sum_probs=61.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHH---H--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLIL---F--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +.||+|+|+.+....+..+++.+...   .  .++...+++...+.|++.+...+.......|..| ++|+++.++.+..
T Consensus       261 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  339 (401)
T PRK11043        261 ALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTL  339 (401)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHH
Confidence            46999999977666555544443322   1  2455556666778888899888888777777775 6799999999877


Q ss_pred             HHHhHHHHHHhhhh
Q psy7965          77 LTLGVLYVYCLGLS   90 (257)
Q Consensus        77 ~~~G~~~~~~~~~~   90 (257)
                      ...+...++.+.+.
T Consensus       340 ~~~~~~~~~~~~g~  353 (401)
T PRK11043        340 QLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655555443

>KOG0252|consensus

Probab=97.08  E-value=0.00076  Score=55.39  Aligned_cols=96  Identities=19%  Similarity=0.090  Sum_probs=72.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhH----H----HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNI----Y----MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----~----~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      +.|+.|||++.+.+.+++.+..+..+...|.    .    .+-+..++.-+|   -......+-+|.+|.+.|+..-++.
T Consensus       371 ~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIs  447 (538)
T KOG0252|consen  371 FIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGIS  447 (538)
T ss_pred             EeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHH
Confidence            6899999999999999999999998887661    1    222333334343   3456678899999999999999999


Q ss_pred             HHHHHHhHHHHHHhhhh----------hHHHHHhhcC
Q psy7965          74 QMFLTLGVLYVYCLGLS----------TYTVIAIGCL  100 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~----------~Wr~~~~~~~  100 (257)
                      .+..-+|.+++...-..          +-|.++++.+
T Consensus       448 AA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~  484 (538)
T KOG0252|consen  448 AASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILA  484 (538)
T ss_pred             HHhccchHHHHHHHhhHhhhccCCccccchHHHHHHH
Confidence            99999998888665433          4566666655

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.07  E-value=0.0022  Score=56.18  Aligned_cols=99  Identities=22%  Similarity=0.328  Sum_probs=77.2

Q ss_pred             cccc-cCchhHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHhhhccccccccceeeeccCCcc---chhhh
Q psy7965           2 FADK-FGRKPVILAFCFPYILSWLLILFAQ--------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS---IRGAL   69 (257)
Q Consensus         2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~   69 (257)
                      ++|+ +||++.+.++.++..+|..+.+++.        .....+++-.+.++|.|+.-+...+...|-++++   +|...
T Consensus        46 iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~  125 (654)
T TIGR00926        46 IADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRF  125 (654)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHH
Confidence            4665 4999999999999999998887642        1234667788899999999999999999998764   36667


Q ss_pred             hhHHHHHHHHhHHHHHHhhhh------------hHHHHHhhcC
Q psy7965          70 GSFFQMFLTLGVLYVYCLGLS------------TYTVIAIGCL  100 (257)
Q Consensus        70 ~~~~~~~~~~G~~~~~~~~~~------------~Wr~~~~~~~  100 (257)
                      ..++..+.++|.++++.+...            +|...|.+.+
T Consensus       126 F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926       126 FSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            777888888998888666443            3777777766

>PRK10133 L-fucose transporter; Provisional

Probab=97.07  E-value=0.00079  Score=56.42  Aligned_cols=96  Identities=14%  Similarity=-0.012  Sum_probs=67.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.||+|||+++..+.++..++.++..+.++.. -+..-.+.|++.+..+|...+...|..|++ .+.+.++..... +|.
T Consensus       318 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~  394 (438)
T PRK10133        318 LISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGG  394 (438)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHh-ccc
Confidence            67999999999998888877776666655542 245667899999999999999999998754 567777765443 444


Q ss_pred             HHHHHhhhh-----h-HHHHHhhcC
Q psy7965          82 LYVYCLGLS-----T-YTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~-Wr~~~~~~~  100 (257)
                      .+++.+.+.     | -|..|++..
T Consensus       395 ~~~~~i~G~l~~~~g~~~~~~~v~~  419 (438)
T PRK10133        395 GIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_pred             hHHHHHHHHHHHhccchHHHHHHHH
Confidence            444444333     4 456565443

>KOG0254|consensus

Probab=97.07  E-value=0.0016  Score=55.82  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHhhhccccccccceeeeccCCccchhh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNI-------------YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGA   68 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~   68 (257)
                      +.||+|||+.++.+...+.++.++.+.....             ..+...-+.......+..++...+.+|.+|.+.|++
T Consensus       352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~  431 (513)
T KOG0254|consen  352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK  431 (513)
T ss_pred             HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence            6799999999999999999999988764221             222222233333344446677789999999999999


Q ss_pred             hhhHHHHHHHHhHHHH
Q psy7965          69 LGSFFQMFLTLGVLYV   84 (257)
Q Consensus        69 ~~~~~~~~~~~G~~~~   84 (257)
                      +.++..........+.
T Consensus       432 ~~s~~~~~n~~~~~~v  447 (513)
T KOG0254|consen  432 GASLAVAVNWLWNFLI  447 (513)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9998766665555444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.0036  Score=51.03  Aligned_cols=98  Identities=16%  Similarity=0.174  Sum_probs=75.8

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      +++|| +.|+.+.....+..+..+...+.. +.+..++.-++-|+..+.........+++ ..+|.+..+.++.....++
T Consensus       269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl  346 (394)
T COG2814         269 RLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL  346 (394)
T ss_pred             hhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH
Confidence            46899 999999998888888777766654 45566666677888777766666677777 5578899999999999999


Q ss_pred             hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          80 GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        80 G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      |..+|..+++.     +++...++.+
T Consensus       347 gia~GA~lGG~v~~~~g~~~~~~~~a  372 (394)
T COG2814         347 GIALGAALGGLVLDALGYAATGWVGA  372 (394)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            99999888877     6666666555

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.00  E-value=1.9e-05  Score=66.27  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHH--H--hhh------HHHHHHHHHHHhhhccccccccceeeeccCCccchhhhh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLIL--F--AQN------IYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALG   70 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~------~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~   70 (257)
                      ++.||+|||+.++.+.++.++..+..+  .  .++      ...+............+..+....+..|.+|.+.|++..
T Consensus       308 ~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~  387 (451)
T PF00083_consen  308 FLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI  387 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccc
Confidence            468999999999999998888877774  1  111      222222222211222233566678899999999999999


Q ss_pred             hHHHHHHHHhHHHHHHhhhh
Q psy7965          71 SFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        71 ~~~~~~~~~G~~~~~~~~~~   90 (257)
                      ++......++.++++.+...
T Consensus       388 ~~~~~~~~i~~~i~~~~~~~  407 (451)
T PF00083_consen  388 GLSYAVGRIGGFIIPFLFPY  407 (451)
T ss_pred             cccccccccccccccccccc
Confidence            99888878888777766544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764|consensus

Probab=96.98  E-value=0.00086  Score=54.09  Aligned_cols=99  Identities=22%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             cccccC--chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCcc------chhhhhhHH
Q psy7965           2 FADKFG--RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS------IRGALGSFF   73 (257)
Q Consensus         2 l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~------~r~~~~~~~   73 (257)
                      ++||++  |...-..+.+..++.+....+++++.++.+-+...|++.+...+.......+....+      .-|...++.
T Consensus       329 la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIa  408 (464)
T KOG3764|consen  329 LADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIA  408 (464)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHH
Confidence            689999  655555677777777788888999999999999999988888777666555555433      346888899


Q ss_pred             HHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          74 QMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +.++++|..++|.+++.     |.+|...+.+
T Consensus       409 d~a~sla~a~GP~~gg~iv~~iGF~wl~~iig  440 (464)
T KOG3764|consen  409 DAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG  440 (464)
T ss_pred             HHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence            99999999999999988     6676655544

>KOG0255|consensus

Probab=96.97  E-value=0.0011  Score=56.83  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=76.0

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIY---MLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      +.|++|||.....+..+..++.+..++..+..   ...+...+..++.+..+.....+.+|.+|...|..+.+.......
T Consensus       373 ~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~  452 (521)
T KOG0255|consen  373 LLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAAR  452 (521)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999876543   356666666677777777779999999999999999999999999


Q ss_pred             HhHHHHHHhhhh
Q psy7965          79 LGVLYVYCLGLS   90 (257)
Q Consensus        79 ~G~~~~~~~~~~   90 (257)
                      +|.+++|.+...
T Consensus       453 ~~~i~ap~~~~~  464 (521)
T KOG0255|consen  453 LGSILAPLFPLL  464 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.88  E-value=0.0019  Score=54.43  Aligned_cols=89  Identities=8%  Similarity=-0.011  Sum_probs=73.4

Q ss_pred             cccccC-chhHHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHHHHhhhccccccccceeeec
Q psy7965           2 FADKFG-RKPVILAFCFPYILSWLLILFAQN---------------------IYMLFVARFIAGVGTGGLCAIIPMFIGE   59 (257)
Q Consensus         2 l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~l~G~~~g~~~~~~~~~i~e   59 (257)
                      +.+|+| ||++..++.++.+++.+...+.++                     .+..++...+.|+..+..+...++++++
T Consensus       328 l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~  407 (477)
T TIGR01301       328 LCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI  407 (477)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence            467898 577779998888888877776443                     3677788899999999999999999999


Q ss_pred             cCCc--cchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          60 IAES--SIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        60 ~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      ..++  ++.|..+++++....+.+++..+..+.
T Consensus       408 ~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       408 RSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             HccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            9995  455999999999999999988875544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.85  E-value=0.0011  Score=55.15  Aligned_cols=87  Identities=10%  Similarity=-0.072  Sum_probs=66.0

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      ++.||+++|+++.++.++..+..++..+.++... ..+-.+.|++.+..+|.......+..+++.+.....+.. + .+|
T Consensus       291 ~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~G  367 (410)
T TIGR00885       291 WLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIG  367 (410)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-Hhc
Confidence            3679999999999999999998888888776544 566778888899999999999999998766433333333 2 377


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+.|.+.+.
T Consensus       368 ga~~p~l~G~  377 (410)
T TIGR00885       368 GGIVPPLQGF  377 (410)
T ss_pred             cchHHHHHHH
Confidence            7777766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3098|consensus

Probab=96.84  E-value=0.029  Score=46.92  Aligned_cols=85  Identities=16%  Similarity=0.095  Sum_probs=72.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.|+.|.|..+.++..+.....+..-+ +|-+.+++.-.+.|+|.+..+..-..+++|+.++|++.+..++.-.....+.
T Consensus        73 iv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~l  151 (461)
T KOG3098|consen   73 IVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSL  151 (461)
T ss_pred             HHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHH
Confidence            458899999999999999887776655 5677888999999999999999999999999999999999998766666666


Q ss_pred             HHHHHh
Q psy7965          82 LYVYCL   87 (257)
Q Consensus        82 ~~~~~~   87 (257)
                      ++|...
T Consensus       152 i~Ggi~  157 (461)
T KOG3098|consen  152 IIGGII  157 (461)
T ss_pred             HhhhHh
Confidence            666544

>TIGR00788 fbt folate/biopterin transporter

Probab=96.82  E-value=0.00048  Score=58.20  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILF----------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF   72 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~   72 (257)
                      .+|++.|+++.++.++.+++.+....          .++.+..+..-.+.+++.+........++.+..|++++|...++
T Consensus       312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al  391 (468)
T TIGR00788       312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFAL  391 (468)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHH
Confidence            47899999999999999888755431          13334556667888999899899999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHhhhh
Q psy7965          73 FQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        73 ~~~~~~~G~~~~~~~~~~   90 (257)
                      .+...++|..+++.+++.
T Consensus       392 ~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       392 LASILHLGSSVSGFLGVL  409 (468)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.72  E-value=0.0028  Score=51.87  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHh--h-------hHHHHHHHHHHHhhhccccccccceeeeccCCcc---chhhhhhHHHHHH
Q psy7965          10 PVILAFCFPYILSWLLILFA--Q-------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS---IRGALGSFFQMFL   77 (257)
Q Consensus        10 ~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~   77 (257)
                      +++.++.++..+|.++..++  +       +...++++-.+.++|.|+.-+....+.+|-++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788999999999885543  2       1357899999999999999999999999999876   4666777889999


Q ss_pred             HHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ++|.+++.....+     +|.+.|.+.+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~  109 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPA  109 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHH
Confidence            9999999887766     7988888876

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637|consensus

Probab=96.60  E-value=0.0004  Score=56.82  Aligned_cols=91  Identities=20%  Similarity=0.376  Sum_probs=71.7

Q ss_pred             ccCchhHHHH-HHHHHHHHHHHHHHhhhH-----------------HHHHHHHHHHhhhccccccccceeeeccCCccch
Q psy7965           5 KFGRKPVILA-FCFPYILSWLLILFAQNI-----------------YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR   66 (257)
Q Consensus         5 r~Grr~~l~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r   66 (257)
                      ||||||-++. +.+...++.++.++++++                 ..++++.-+.-++.......+-++++|....++|
T Consensus        97 r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~  176 (498)
T KOG0637|consen   97 RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK  176 (498)
T ss_pred             ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh
Confidence            6899887776 566667777777776654                 3456666677778888889999999999988877


Q ss_pred             hh-hhhHHHHHHHHhHHHHHHhhhh-hHHHH
Q psy7965          67 GA-LGSFFQMFLTLGVLYVYCLGLS-TYTVI   95 (257)
Q Consensus        67 ~~-~~~~~~~~~~~G~~~~~~~~~~-~Wr~~   95 (257)
                      .+ +.+.+.....+|..+|..++.+ +|+-.
T Consensus       177 ~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~  207 (498)
T KOG0637|consen  177 KTRANSVFSFFMAVGNVLGYALGSYLGLYKI  207 (498)
T ss_pred             hhccchhHHHHHHhcceeeeecccccCceEE
Confidence            77 9999999999999999999866 66543

>KOG4686|consensus

Probab=96.58  E-value=0.0047  Score=47.90  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             cccccCchhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILS-WLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      ++||+||+...+.+..+..+. -....+  +.+.=.+...+.|+.........+..++-..|.++.|++.+..|...++|
T Consensus       323 i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLg  400 (459)
T KOG4686|consen  323 ISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLG  400 (459)
T ss_pred             hHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhh
Confidence            689999999988866555443 333333  23333456667888777766667788888999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      -.+.+++++.
T Consensus       401 la~i~Iiag~  410 (459)
T KOG4686|consen  401 LAFIPIIAGF  410 (459)
T ss_pred             hhHHhhhhhe
Confidence            9999999877

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.58  E-value=0.0036  Score=51.60  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      +.+.+..+.++.|++.+...+....+..|..| ++++...++.+...++|..+++.+++.
T Consensus       298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~  356 (394)
T PRK11652        298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM  356 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677788899999999999999999999887 578999999999999999999988776

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.49  E-value=0.0073  Score=49.44  Aligned_cols=65  Identities=25%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             HHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          26 ILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        26 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      .-+.++.+..++.-+..|+..|..+......+.|-.|+++|..+++...++.+.|..++.+++..
T Consensus       329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33467889999999999999999999999999999999999999999999999999999988765

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.37  E-value=0.0011  Score=54.42  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=38.9

Q ss_pred             cccccCchhHHHHHHHHH--HHHHHHH-HHhh----hH-HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH
Q psy7965           2 FADKFGRKPVILAFCFPY--ILSWLLI-LFAQ----NI-YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF   73 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~--~~~~~~~-~~~~----~~-~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~   73 (257)
                      ++||+|.||-++......  ..+.... .+.|    |. ...+++-...|+...+..++.-+++.++.  ++.+.=.|-.
T Consensus        66 i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~  143 (412)
T PF01306_consen   66 ISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRA  143 (412)
T ss_dssp             HHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHH
T ss_pred             hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchH
Confidence            589999777655443322  2233222 2222    22 12223323334444444444444433332  2223333444


Q ss_pred             HHHHHHhHHHHHHhhhh
Q psy7965          74 QMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        74 ~~~~~~G~~~~~~~~~~   90 (257)
                      -...++|.+++..+++.
T Consensus       144 R~wGSig~ai~s~~~G~  160 (412)
T PF01306_consen  144 RMWGSIGFAIASLLAGI  160 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhhe
Confidence            55666666666666655

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.06  E-value=0.025  Score=46.18  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHH
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILF---AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTL   79 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~   79 (257)
                      ..|.++|+.-.+++....++..+..+   ..+.+.+...-++.|++.|.........+.|...+++-|..++.+...+.+
T Consensus       269 ~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~  348 (403)
T PF03209_consen  269 SRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI  348 (403)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH
Confidence            45788888888887777777655544   356888999999999999999999999999999999999999999998888


Q ss_pred             hHHHHHHhhhh
Q psy7965          80 GVLYVYCLGLS   90 (257)
Q Consensus        80 G~~~~~~~~~~   90 (257)
                      +.-++..+++.
T Consensus       349 A~Glg~~~GG~  359 (403)
T PF03209_consen  349 ARGLGTFLGGA  359 (403)
T ss_pred             HHHHHHHHHHH
Confidence            88777777665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.03  E-value=0.015  Score=49.06  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh--------hHHHHHhhcC
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS--------TYTVIAIGCL  100 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------~Wr~~~~~~~  100 (257)
                      +....+++-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|.+++|.+.+.        +|+..|.+.+
T Consensus       360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~  436 (465)
T TIGR00894       360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA  436 (465)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence            334444444555555555555555556677765 89999999999999999999877654        3777777665

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.73  E-value=0.0069  Score=49.44  Aligned_cols=100  Identities=20%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             Cccccc--CchhHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           1 PFADKF--GRKPVILA-FCFPYILSWLLILFAQ--NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         1 ~l~dr~--Grr~~l~~-~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      |++||+  |||...-+ ++++..++.+..-.++  |+....++-++.|+..-+..-.......|..|++--|.+.++...
T Consensus       310 wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl  389 (448)
T COG2271         310 WLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL  389 (448)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence            478987  67765444 5555555555555555  458888888889987766666667778999999999999999988


Q ss_pred             HHHH-hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          76 FLTL-GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        76 ~~~~-G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +..+ |...+...-+.     ||...|++..
T Consensus       390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~  420 (448)
T COG2271         390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLS  420 (448)
T ss_pred             HHHHhhHHhcCCcceeeEecCCCcchHHHHH
Confidence            8877 76666554443     8888776655

>KOG3810|consensus

Probab=95.52  E-value=0.021  Score=45.49  Aligned_cols=87  Identities=15%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL   82 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~   82 (257)
                      .|-.--|++++.-.+-......+..+.++.+.+=+.-++.|...+. ...-++++-+..+++++.++.+...+..-.|..
T Consensus        66 TD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~  144 (433)
T KOG3810|consen   66 TDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKF  144 (433)
T ss_pred             hhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhH
Confidence            4555557777776666666677777888888888888888887665 456678999999999999999987777777766


Q ss_pred             HHHHhhhh
Q psy7965          83 YVYCLGLS   90 (257)
Q Consensus        83 ~~~~~~~~   90 (257)
                      .+..++-.
T Consensus       145 ~g~vlaQl  152 (433)
T KOG3810|consen  145 VGSVLAQL  152 (433)
T ss_pred             HHhHHHHH
Confidence            66666544

>KOG2816|consensus

Probab=95.00  E-value=0.042  Score=46.27  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=76.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL   82 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~   82 (257)
                      ...+|-|+++..++..-.+.....+++++.|+++....+.++. +...+...+.++.+..++++|++.++......+..+
T Consensus       302 ~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~  380 (463)
T KOG2816|consen  302 SSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV  380 (463)
T ss_pred             HHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence            4567888889999999999999999999999999998888774 556888889999999999999999999999999888


Q ss_pred             HHHHhhhh
Q psy7965          83 YVYCLGLS   90 (257)
Q Consensus        83 ~~~~~~~~   90 (257)
                      +++.+-..
T Consensus       381 ~~~~~~~~  388 (463)
T KOG2816|consen  381 VSPALYGN  388 (463)
T ss_pred             hhHHHHHH
Confidence            88877654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.92  E-value=0.13  Score=43.25  Aligned_cols=47  Identities=9%  Similarity=-0.048  Sum_probs=33.3

Q ss_pred             HHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHh
Q psy7965          41 IAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL   87 (257)
Q Consensus        41 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~   87 (257)
                      +.=+-++.=..+.-.+.-.+..+++++.+.....+|.+.|.+++..+
T Consensus       127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv  173 (544)
T PF13000_consen  127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV  173 (544)
T ss_pred             HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence            33333444444555566667788999999999999999998887555

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=94.67  E-value=0.079  Score=42.65  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHHHHHHHhHHH
Q psy7965           5 KFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQMFLTLGVLY   83 (257)
Q Consensus         5 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~~~~~~G~~~   83 (257)
                      +-.+|+.......++.+|...+.+.+....++. -++.|+|.|..++....++.+.++..++ +.-.+..|....+=..+
T Consensus       270 ~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~  348 (395)
T COG2807         270 SKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF  348 (395)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh
Confidence            447888888888888888888877766544444 4899999999999999999988765443 33444444444443456


Q ss_pred             HHHhhhh------hHHHHHhhcC
Q psy7965          84 VYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        84 ~~~~~~~------~Wr~~~~~~~  100 (257)
                      +|.+.+.      +|+.......
T Consensus       349 GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         349 GPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             hhhhHhHHHHhcCChHHHHHHHH
Confidence            6766665      7887665544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.63  E-value=0.22  Score=42.08  Aligned_cols=89  Identities=9%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh--h-----------------------------hHHHHHHHHHHHhhhccccc
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA--Q-----------------------------NIYMLFVARFIAGVGTGGLC   50 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-----------------------------~~~~~~~~r~l~G~~~g~~~   50 (257)
                      +++|++|++.+-+....+...-.+.++.  +                             +.|...+.-....+-.....
T Consensus        67 l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vv  146 (472)
T TIGR00769        67 LSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVL  146 (472)
T ss_pred             HHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            6789999999888776666666665553  1                             12222233334444444444


Q ss_pred             c-ccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          51 A-IIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        51 ~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      + .-+.++.|.++.+|-.+..+++..+.++|.++++.+...
T Consensus       147 S~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       147 SLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 668899999999999999999999999999999877544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3574|consensus

Probab=94.22  E-value=0.25  Score=40.30  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             cccCchhHHHH-HHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhh
Q psy7965           4 DKFGRKPVILA-FCFPYILSWLLILF-----------AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGS   71 (257)
Q Consensus         4 dr~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~   71 (257)
                      +|+||||.-++ +..+.+..+.+.+.           .++...+....++.-+.++.-....-.+.-.+..+++-|-+..
T Consensus        93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST  172 (510)
T KOG3574|consen   93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST  172 (510)
T ss_pred             HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence            39999998665 55555555544443           2334444445556666666666666667777888999999999


Q ss_pred             HHHHHHHHhHHHHHHh
Q psy7965          72 FFQMFLTLGVLYVYCL   87 (257)
Q Consensus        72 ~~~~~~~~G~~~~~~~   87 (257)
                      ...++...|.+++..+
T Consensus       173 ~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  173 CQSVGQTAGYFLGNVV  188 (510)
T ss_pred             HHHHHHhhhHHhhcce
Confidence            9999999999888655

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.07  E-value=3  Score=35.09  Aligned_cols=18  Identities=22%  Similarity=0.111  Sum_probs=13.2

Q ss_pred             cccccCchhHHHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPY   19 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~   19 (257)
                      +.||..|.++...+.+.-
T Consensus        61 ~iD~~~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen   61 WIDRSPRLKVIRTSLVVQ   78 (432)
T ss_pred             HHhCCcchhhHHHHHHHH
Confidence            469999999877665444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=93.98  E-value=0.092  Score=45.66  Aligned_cols=78  Identities=15%  Similarity=0.169  Sum_probs=62.8

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHH
Q psy7965           5 KFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYV   84 (257)
Q Consensus         5 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~   84 (257)
                      |+-|--.+.+..+ +.++.++..++-....+++.-++.|++.|..++.....++|.|- ++-|+-..+......+|.++-
T Consensus       426 r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~  503 (591)
T PTZ00207        426 RVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFL  503 (591)
T ss_pred             ccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHH
Confidence            3444444555555 77777777776444789999999999999999999999999999 888999999999999988765

>KOG2615|consensus

Probab=93.92  E-value=0.11  Score=42.28  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHh
Q psy7965           8 RKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCL   87 (257)
Q Consensus         8 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~   87 (257)
                      -|-.+..++.+..=..++.+.++....+..+-.+..+..+...+....++....|.++||..+|+......++-++||++
T Consensus       328 ~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv  407 (451)
T KOG2615|consen  328 IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLV  407 (451)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhh
Confidence            33444445554444445555667778888888889998888889999999999999999999999999999999999999


Q ss_pred             hhh
Q psy7965          88 GLS   90 (257)
Q Consensus        88 ~~~   90 (257)
                      ++.
T Consensus       408 ~g~  410 (451)
T KOG2615|consen  408 SGV  410 (451)
T ss_pred             hhe
Confidence            855

>KOG3098|consensus

Probab=93.80  E-value=0.2  Score=42.11  Aligned_cols=85  Identities=20%  Similarity=0.385  Sum_probs=67.5

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHhhhccccccccceeeeccCCcc
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILFA------------------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESS   64 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~   64 (257)
                      .|++||++.+.++.++..++.++.-.+                  +++...++.-++.|++-+......+.++++.. ++
T Consensus       306 ir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~  384 (461)
T KOG3098|consen  306 IRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PD  384 (461)
T ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cC
Confidence            478999999999999998888887662                  13557777889999999999999999999999 67


Q ss_pred             chhhhhhHHHHHHHHhHHHHHHhh
Q psy7965          65 IRGALGSFFQMFLTLGVLYVYCLG   88 (257)
Q Consensus        65 ~r~~~~~~~~~~~~~G~~~~~~~~   88 (257)
                      +|..+.+++-.-..++..++....
T Consensus       385 ~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  385 DRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhh
Confidence            788888887666666665544443

>KOG3880|consensus

Probab=93.62  E-value=0.17  Score=39.96  Aligned_cols=74  Identities=18%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          17 FPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      .++.+...+..+.++++..++.-+..|+-.|..+...+--+.+-.++++|-.+++....+-++|..++.+++..
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            34444555566688999999999999999999999888888888999999999999999999999999888755

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.36  E-value=0.23  Score=42.32  Aligned_cols=77  Identities=6%  Similarity=0.071  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH-HHHhH
Q psy7965          12 ILAFCFPYILSWLLILFA---------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF-LTLGV   81 (257)
Q Consensus        12 l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~-~~~G~   81 (257)
                      +.+++++.+++.++..++         .+.+.++..-++.++|+-...|+..+.+++..|++.||..++.+... ..+|.
T Consensus       348 fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~  427 (493)
T PRK15462        348 FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN  427 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            566777777776665441         24567888889999999999999999999999999999999998653 35666


Q ss_pred             HHHHHhh
Q psy7965          82 LYVYCLG   88 (257)
Q Consensus        82 ~~~~~~~   88 (257)
                      .++..++
T Consensus       428 ~~~g~~~  434 (493)
T PRK15462        428 YLAGVIA  434 (493)
T ss_pred             HHHHHHH
Confidence            6655443

>KOG4332|consensus

Probab=92.23  E-value=0.67  Score=36.11  Aligned_cols=70  Identities=30%  Similarity=0.504  Sum_probs=49.2

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccce-eeeccCCccchhhhhhHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPM-FIGEIAESSIRGALGSFFQ   74 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~r~~~~~~~~   74 (257)
                      ++||-|||+.-+.-.+...++++ +-.+++|-.++++|.+.|++.+..+..--+ +++|+-  |+|+.-.-+..
T Consensus        95 LaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls  165 (454)
T KOG4332|consen   95 LADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLS  165 (454)
T ss_pred             HHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhh
Confidence            68999999976655555554443 345788999999999999998887776644 466765  45555444433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.33  E-value=0.049  Score=44.74  Aligned_cols=80  Identities=11%  Similarity=-0.020  Sum_probs=57.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHH
Q psy7965           3 ADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVL   82 (257)
Q Consensus         3 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~   82 (257)
                      .+|..-+.-...+.++..++.++.++++|.+.=+++-.+.+++.|........+. ..+++    ...+.+.+|.+.+.+
T Consensus        83 i~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~----~~l~~wssGTG~aGl  157 (402)
T PF02487_consen   83 IHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK----SSLSAWSSGTGGAGL  157 (402)
T ss_pred             hhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc----cccccccCCcChhhH
Confidence            3455444445667778888999999999999888999999999988877777754 35543    345666666666666


Q ss_pred             HHHHh
Q psy7965          83 YVYCL   87 (257)
Q Consensus        83 ~~~~~   87 (257)
                      +|+..
T Consensus       158 ~Ga~~  162 (402)
T PF02487_consen  158 VGALY  162 (402)
T ss_pred             HHHHH
Confidence            66554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=91.16  E-value=1.2  Score=37.23  Aligned_cols=59  Identities=10%  Similarity=0.116  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          31 NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        31 ~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      ++...+++.++.++|.+...+...... ..-....+|++.++.+.....+...++....+
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~  369 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRW  369 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456788888898888877776322 12222346888887776666666665555544

>KOG1237|consensus

Probab=86.54  E-value=1.7  Score=37.90  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=72.5

Q ss_pred             ccccc-CchhHHHHHHHHHHHHHHHHHHhhh-------------------------HHHHHHHHHHHhhhccccccccce
Q psy7965           2 FADKF-GRKPVILAFCFPYILSWLLILFAQN-------------------------IYMLFVARFIAGVGTGGLCAIIPM   55 (257)
Q Consensus         2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~r~l~G~~~g~~~~~~~~   55 (257)
                      ++|-| ||-+++.++.++..+|..+..++..                         ...+..+..+..+|.|+.-+....
T Consensus        96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~  175 (571)
T KOG1237|consen   96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA  175 (571)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh
Confidence            56766 9999999998888888665554221                         125666777888899999999999


Q ss_pred             eeeccCC---c-cchh--hhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          56 FIGEIAE---S-SIRG--ALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        56 ~i~e~~~---~-~~r~--~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +-+|-++   + +++.  ..+.++....+.|.+++..+-.+     +|.+-|.+..
T Consensus       176 fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~  231 (571)
T KOG1237|consen  176 FGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT  231 (571)
T ss_pred             hcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence            9999998   3 2223  56777888888888877666544     7877665554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=86.42  E-value=2.5  Score=37.07  Aligned_cols=85  Identities=13%  Similarity=0.038  Sum_probs=61.5

Q ss_pred             ccCchh-HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           5 KFGRKP-VILAFCFPYILSWLLILF--AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         5 r~Grr~-~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      +.+|-| .++++.+++.++...++.  .+|....+..-++.|++.|...........-..|.+.-+.+.++....-.+|.
T Consensus       375 ~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GG  454 (599)
T PF06609_consen  375 KIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGG  454 (599)
T ss_pred             HccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhh
Confidence            344444 445666666655444443  34555556777899999999888888888888999999999999888888888


Q ss_pred             HHHHHhhh
Q psy7965          82 LYVYCLGL   89 (257)
Q Consensus        82 ~~~~~~~~   89 (257)
                      .++..+..
T Consensus       455 sIg~aIy~  462 (599)
T PF06609_consen  455 SIGYAIYN  462 (599)
T ss_pred             HHHHHHHH
Confidence            77776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=85.96  E-value=6.3  Score=30.55  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=26.4

Q ss_pred             cchhhhhhHHHHHHHHhHHHH--HHhhhh--------hHHHHHhhcC
Q psy7965          64 SIRGALGSFFQMFLTLGVLYV--YCLGLS--------TYTVIAIGCL  100 (257)
Q Consensus        64 ~~r~~~~~~~~~~~~~G~~~~--~~~~~~--------~Wr~~~~~~~  100 (257)
                      ++|+..+.+-..+.++|.++.  |.+-..        +|++++.+.+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~   48 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFI   48 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHH
Confidence            567777788788888888765  333321        8999887776

>KOG2532|consensus

Probab=83.94  E-value=1.5  Score=37.21  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhh--H----HHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965           7 GRKPVILAFCFPYILSWLLILFAQN--I----YMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus         7 Grr~~l~~~~~~~~~~~~~~~~~~~--~----~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      -||..-.++....++..+..++.++  .    ..+.+.-.+.|+..++..    .-..|. .+++-+..+++.+....+.
T Consensus       331 ~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~  405 (466)
T KOG2532|consen  331 VRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALA  405 (466)
T ss_pred             HHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666552  1    122222233333333322    222233 4567799999999999999


Q ss_pred             HHHHHHhhhh--------hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS--------TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~--------~Wr~~~~~~~  100 (257)
                      .+++|.+.+.        .||.+|.+.+
T Consensus       406 ~~~~P~~vg~~~~~~t~~eW~~VF~i~a  433 (466)
T KOG2532|consen  406 GFIAPLLVGIIVTDNTREEWRIVFLIAA  433 (466)
T ss_pred             HHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence            9999988766        7999998877

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=83.43  E-value=15  Score=31.65  Aligned_cols=89  Identities=13%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHh--hh-----------------------------HHHHHHHHHHHhhhccccc
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFA--QN-----------------------------IYMLFVARFIAGVGTGGLC   50 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~-----------------------------~~~~~~~r~l~G~~~g~~~   50 (257)
                      ++|+++|.+++-+....+...-.+.++.  |+                             .|.+.+.-.+.-+-.....
T Consensus        82 l~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvl  161 (491)
T PF03219_consen   82 LSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVL  161 (491)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999998877666665555555541  11                             0111112222222222222


Q ss_pred             c-ccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          51 A-IIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        51 ~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      + .-+.+..|.++.+|-.+..+++..+.++|.+++..+...
T Consensus       162 SlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~  202 (491)
T PF03219_consen  162 SLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSY  202 (491)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 347789999999999999999999999999887766544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2533|consensus

Probab=82.90  E-value=1  Score=38.48  Aligned_cols=96  Identities=15%  Similarity=0.025  Sum_probs=55.2

Q ss_pred             Ccccc----cCchhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccch-hhhhhHHH
Q psy7965           1 PFADK----FGRKPVILAFCFPYILSW-LLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIR-GALGSFFQ   74 (257)
Q Consensus         1 ~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r-~~~~~~~~   74 (257)
                      +++||    ..+|........+..+.. .......+.......-+....+.+...+.......+...++.| -...+...
T Consensus       331 ~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i  410 (495)
T KOG2533|consen  331 YLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII  410 (495)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence            36899    667777666666655544 4444443344444444455555666667777777777765544 44444555


Q ss_pred             HHHHHhHHHHHHhhhh------hHHHHH
Q psy7965          75 MFLTLGVLYVYCLGLS------TYTVIA   96 (257)
Q Consensus        75 ~~~~~G~~~~~~~~~~------~Wr~~~   96 (257)
                      .+.+.+.++++.+-..      .|...|
T Consensus       411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  411 DGTGSAGAISGQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             cchhHHHHhhhhhcccccCcchhhhhHH
Confidence            5555555555544322      566665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		9e-17

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 37  VARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLG-------- 88
           + R I G+G G    + PM+I E+A + IRG L SF Q  +  G L VYC+         
Sbjct: 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190
Query: 89  ---LST---YTVIAIGCL--------------TPIFLMKSGKPEKAEVSLRYYRGAQYDV 128
              L+T     + A  C+              +P +LM  GK E+AE  LR   G    +
Sbjct: 191 ASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN--TL 248
Query: 129 ATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIF 188
           AT+  A+Q+   +    + T   L      +  +++ + L IFQQF G+N V++Y+ ++F
Sbjct: 249 ATQ--AVQEIKHSLDHGRKTGGRLLMFGVGV--IVIGVMLSIFQQFVGINVVLYYAPEVF 304
Query: 189 KSAGSTLDPS-ISAIIVGVVQCIVTGLSNSGSD--------------------------- 220
           K+ G++ D + +  IIVGV+    T L+    D                           
Sbjct: 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364
Query: 221 VSSIAFLPLISVIMFIVMFSLGFGPIPWMMVGELF 255
             +   + L+S++ ++  F++ +GP+ W+++ E+F
Sbjct: 365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-06

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 1   PFADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTG 47
           P +D+ GR+PVIL     ++L+ L+ +   ++ +L  A  + G+GTG
Sbjct: 57  PISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.77
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.63
2xut_A	524	Proton/peptide symporter family protein; transport	99.42
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.73
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.59
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.59
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.45
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.25
2xut_A	524	Proton/peptide symporter family protein; transport	97.63
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.62

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=1.5e-28  Score=205.51  Aligned_cols=251  Identities=27%  Similarity=0.512  Sum_probs=180.9

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHhhhccccccccceeeeccCC
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLLIL------------------FAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAE   62 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~   62 (257)
                      +++||+|||++++++.+++.+++++++                  +++|++.++++|+++|++.|...+..+.+++|+.|
T Consensus        77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p  156 (491)
T 4gc0_A           77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP  156 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            368999999999999999999999998                  47899999999999999999999999999999999


Q ss_pred             ccchhhhhhHHHHHHHHhHHHHHHhhhh-------------hHHHHHhhcC---------------ChHHHHhcCChHHH
Q psy7965          63 SSIRGALGSFFQMFLTLGVLYVYCLGLS-------------TYTVIAIGCL---------------TPIFLMKSGKPEKA  114 (257)
Q Consensus        63 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~-------------~Wr~~~~~~~---------------~~~~l~~~~~~~~~  114 (257)
                      +++|++..++.+.+...|.++++.++..             .||+.+.+..               +|+|+..+++.+++
T Consensus       157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a  236 (491)
T 4gc0_A          157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA  236 (491)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH
T ss_pred             HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH
Confidence            9999999999999999999988887643             5777665544               99999999999999


Q ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHhhhhhhhHHhhhcCCchhHHHHHHHHHHHHhhcccceeehhchHHHHHhcCCC
Q psy7965         115 EVSLRYYRGAQYDVATELAAIQKEIDAASEKKATFSDLFSSRANLRGLIVSLGLMIFQQFSGVNTVIFYSNDIFKSAGST  194 (257)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (257)
                      .+.+++...++...+++.+. ++..++ +++.......++    .++.........++++.+.+.+.+|.+.+.+..+..
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4gc0_A          237 EGILRKIMGNTLATQAVQEI-KHSLDH-GRKTGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS  310 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHhHHHhcCCchhHHHHHHH-HHHHHh-hhhhhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence            98887765443222221111 111111 111111222222    234556666667777777888889999888877522


Q ss_pred             -CChhhHHHHHHHhhhhhhhcc---------------------------ccCCCccccchHHHHHHHHHHHHHhhccccc
Q psy7965         195 -LDPSISAIIVGVVQCIVTGLS---------------------------NSGSDVSSIAFLPLISVIMFIVMFSLGFGPI  246 (257)
Q Consensus       195 -~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (257)
                       .+......+.++..+++.+++                           .............+..++++..+++.+++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (491)
T 4gc0_A          311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV  390 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence             223444556666666666655                           0011122233344555666777888999999


Q ss_pred             cceeeccccCC
Q psy7965         247 PWMMVGELFAA  257 (257)
Q Consensus       247 ~~~~~~e~~P~  257 (257)
                      .|++.+|++|+
T Consensus       391 ~~~~~~E~fPt  401 (491)
T 4gc0_A          391 CWVLLSEIFPN  401 (491)
T ss_dssp             HHHHHHHSSCT
T ss_pred             HHHHHHHhCCH
Confidence            99999999996

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.78  E-value=7e-20  Score=150.79  Aligned_cols=89  Identities=24%  Similarity=0.261  Sum_probs=85.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLI---LFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~   78 (257)
                      ++||+|||++++++.++.+++.++.   .++++++.++++|++.|++.|...+....++.|++|+++|++++++.+.+.+
T Consensus        84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  163 (438)
T 3o7q_A           84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS  163 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            6899999999999999999999999   8889999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhh
Q psy7965          79 LGVLYVYCLGLS   90 (257)
Q Consensus        79 ~G~~~~~~~~~~   90 (257)
                      +|.++++.++..
T Consensus       164 ~g~~~g~~~~~~  175 (438)
T 3o7q_A          164 FGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988766

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.77  E-value=2.7e-20  Score=153.80  Aligned_cols=99  Identities=16%  Similarity=0.044  Sum_probs=93.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||+|||++++++.++.+++.++.++    ++|++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus        85 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  164 (451)
T 1pw4_A           85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  164 (451)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence            689999999999999999999999999    9999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh-----h-HHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS-----T-YTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~-----~-Wr~~~~~~~  100 (257)
                      .+|.++++.++..     + ||+.|++.+
T Consensus       165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~~  193 (451)
T 1pw4_A          165 NVGGGIPPLLFLLGMAWFNDWHAALYMPA  193 (451)
T ss_dssp             HHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9999999888865     6 999888766

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.64  E-value=4e-18  Score=137.67  Aligned_cols=99  Identities=21%  Similarity=0.279  Sum_probs=94.3

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++..++.++..+++|++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.
T Consensus        58 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  137 (375)
T 2gfp_A           58 ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP  137 (375)
T ss_dssp             HHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh-----hHHHHHhhcC
Q psy7965          82 LYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .+++.++..     +||+.+.+.+
T Consensus       138 ~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A          138 LLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhccHHHHHHHHH
Confidence            999999877     8999988766

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.63  E-value=4.7e-16  Score=129.89  Aligned_cols=99  Identities=20%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             cccc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccc--hhhhhhHHHHHHH
Q psy7965           2 FADK-FGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSI--RGALGSFFQMFLT   78 (257)
Q Consensus         2 l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~   78 (257)
                      ++|| +|||+++..+.++.+++.++.++++|++.++++|++.|++.|...+...+++.|++|+++  |+.+.++++.+.+
T Consensus        77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  156 (491)
T 4aps_A           77 VADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN  156 (491)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH
Confidence            6899 899999999999999999999999999999999999999999999999999999999998  7788888999999


Q ss_pred             HhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          79 LGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        79 ~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      +|..++|.++..     +||+.|++.+
T Consensus       157 ~g~~~~~~~~~~l~~~~g~~~~f~~~~  183 (491)
T 4aps_A          157 LGAFIAPLIVGAAQEAAGYHVAFSLAA  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999988877     8999988875

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.42  E-value=1.7e-13  Score=115.36  Aligned_cols=99  Identities=17%  Similarity=0.297  Sum_probs=91.6

Q ss_pred             ccccc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH---HHHH
Q psy7965           2 FADKF-GRKPVILAFCFPYILSWLLILFAQ-NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF---FQMF   76 (257)
Q Consensus         2 l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~   76 (257)
                      ++||+ |||+++.++.++.+++.++..+++ +++.++++|++.|++.+...+...+++.|++|+++|+++.+.   .+..
T Consensus        77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  156 (524)
T 2xut_A           77 IADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFT  156 (524)
T ss_dssp             HHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence            68999 999999999999999999999998 999999999999999999999999999999999999877666   8889


Q ss_pred             HHHhHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTLGVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      .++|.++++.+++.     +||+.|.+.+
T Consensus       157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~  185 (524)
T 2xut_A          157 INFGSFFASLSMPLLLKNFGAAVAFGIPG  185 (524)
T ss_dssp             HHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            99999999988776     8999988766

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.84  E-value=4.3e-12  Score=103.85  Aligned_cols=100  Identities=12%  Similarity=0.038  Sum_probs=62.7

Q ss_pred             CcccccCchhHHHHHHHHHHHHHHH---HHHhhhHH-HHHHHHHHHhhhccccccccceeeeccCCc--cchhhhhhHHH
Q psy7965           1 PFADKFGRKPVILAFCFPYILSWLL---ILFAQNIY-MLFVARFIAGVGTGGLCAIIPMFIGEIAES--SIRGALGSFFQ   74 (257)
Q Consensus         1 ~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~-~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~   74 (257)
                      +++||+|||++++++..+.+++...   ..+++... .+...+.+.|++.|...+.....+.++.++  ++|+...+..+
T Consensus        65 ~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  144 (417)
T 2cfq_A           65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR  144 (417)
T ss_dssp             HHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHS
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHH
Confidence            3689999999999988777553221   12222211 234566666666655554444445555443  34566666666


Q ss_pred             HHHHHhHHHHHHhhhh----hHHHHHhhcC
Q psy7965          75 MFLTLGVLYVYCLGLS----TYTVIAIGCL  100 (257)
Q Consensus        75 ~~~~~G~~~~~~~~~~----~Wr~~~~~~~  100 (257)
                      ....+|..++|.++..    +||+.|++.+
T Consensus       145 ~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~  174 (417)
T 2cfq_A          145 MFGCVGWALGASIVGIMFTINNQFVFWLGS  174 (417)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            6667777777777665    7999988776

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.73  E-value=9.9e-09  Score=85.45  Aligned_cols=87  Identities=21%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHH-HHHhhhccccccccceeeeccCCccchhhhhhHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ-----NIYMLFVAR-FIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQM   75 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r-~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~   75 (257)
                      +.||+|||+.++.+.....++.+..+...     +...+...- +..+++. +..+..+.+.+|.+|++.|++++++...
T Consensus       335 l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~  413 (491)
T 4gc0_A          335 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVA  413 (491)
T ss_dssp             HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred             HHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            57999999999999888888777665421     122222222 2223322 3346677899999999999999999988


Q ss_pred             HHHHhHHHHHHhhh
Q psy7965          76 FLTLGVLYVYCLGL   89 (257)
Q Consensus        76 ~~~~G~~~~~~~~~   89 (257)
                      ...+|.++++.+..
T Consensus       414 ~~~~~~~i~~~~~p  427 (491)
T 4gc0_A          414 AQWLANYFVSWTFP  427 (491)
T ss_dssp             HHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.59  E-value=1.4e-08  Score=83.43  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             ccccc--CchhHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKF--GRKPVILAFCFPYI-LSWLLILFA--QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +.||+  |||+.+..+..+.. ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+..
T Consensus       311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  390 (451)
T 1pw4_A          311 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  390 (451)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence            57999  99999988877766 666666555  36778888889999999988888889999999999999999999999


Q ss_pred             HHH-hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTL-GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~-G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+ |..+++.+.+.     +|+..+++.+
T Consensus       391 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  420 (451)
T 1pw4_A          391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMI  420 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            999 99999888766     6777776655

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.59  E-value=6.7e-09  Score=84.88  Aligned_cols=99  Identities=12%  Similarity=0.069  Sum_probs=80.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhH-HHHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSF-FQMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G   80 (257)
                      ++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+.+.+. ++....+|
T Consensus       282 l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg  361 (417)
T 2cfq_A          282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence            68999999999998888888877777777888888888888887776667778899999999999999888 47777888


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..++|.+.+.     +++..|.+.+
T Consensus       362 ~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          362 MIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            8888887765     5666665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.45  E-value=5.9e-08  Score=80.80  Aligned_cols=89  Identities=11%  Similarity=0.008  Sum_probs=74.0

Q ss_pred             cccccCchhHHH-----HHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhccccccccceeeeccCCccchh
Q psy7965           2 FADKFGRKPVIL-----AFCFPYILSWLLILFAQ---------NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRG   67 (257)
Q Consensus         2 l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~   67 (257)
                      +.||+|||+...     .+.++.+++.++.....         +.+.+.+.-++.|++.+...+....++.|.+|+++|+
T Consensus       342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g  421 (491)
T 4aps_A          342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS  421 (491)
T ss_dssp             HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence            579999987655     67777777766666643         6677888889999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhHHHHHHhhhh
Q psy7965          68 ALGSFFQMFLTLGVLYVYCLGLS   90 (257)
Q Consensus        68 ~~~~~~~~~~~~G~~~~~~~~~~   90 (257)
                      .+.++.+....+|..+++.+...
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988876

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.25  E-value=5.6e-07  Score=73.64  Aligned_cols=96  Identities=13%  Similarity=-0.031  Sum_probs=77.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGV   81 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~   81 (257)
                      ++||+|||+++..+.++..++.++..+.++...+... ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|.
T Consensus       318 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~  394 (438)
T 3o7q_A          318 LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG  394 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHH
Confidence            6899999999999999999999888888777655444 8889999999999999989999866 888888766 455888


Q ss_pred             HHHHHhhhh-----h-HHHHHhhcC
Q psy7965          82 LYVYCLGLS-----T-YTVIAIGCL  100 (257)
Q Consensus        82 ~~~~~~~~~-----~-Wr~~~~~~~  100 (257)
                      .++|.+.+.     + ++..+.+.+
T Consensus       395 ~~~~~~~g~l~~~~g~~~~~~~~~~  419 (438)
T 3o7q_A          395 GIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHH
Confidence            888887766     5 777666544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.63  E-value=1.8e-05  Score=66.30  Aligned_cols=81  Identities=21%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHh
Q psy7965          10 PVILAFCFPYILSWLLILFA---------QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLG   80 (257)
Q Consensus        10 ~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G   80 (257)
                      +.+..+.++.+++.++.++.         .+.+.+.+..++.|++.+...+....++.|..|+++|++++++.+....+|
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  453 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG  453 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence            46667777777777776653         256777888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy7965          81 VLYVYCLGLS   90 (257)
Q Consensus        81 ~~~~~~~~~~   90 (257)
                      ..+++.+.+.
T Consensus       454 ~~~g~~~~g~  463 (524)
T 2xut_A          454 NLWVLLANVS  463 (524)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888766

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.62  E-value=8e-06  Score=65.39  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHHHHhHHHHHHhhhh-----hHHHHHhh
Q psy7965          30 QNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFLTLGVLYVYCLGLS-----TYTVIAIG   98 (257)
Q Consensus        30 ~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~-----~Wr~~~~~   98 (257)
                      ++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.     +|+..+.+
T Consensus       289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            467778888899999999999999999999998 899999999999999999988888766     45555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.78
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.85
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.84
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.21

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.6e-21  Score=155.00  Aligned_cols=99  Identities=16%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQ----NIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMFL   77 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~   77 (257)
                      ++||+|||+++.++.++.+++.+++++++    +++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.
T Consensus        82 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  161 (447)
T d1pw4a_          82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  161 (447)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccccc
Confidence            68999999999999999999999988764    67889999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhh------hHHHHHhhcC
Q psy7965          78 TLGVLYVYCLGLS------TYTVIAIGCL  100 (257)
Q Consensus        78 ~~G~~~~~~~~~~------~Wr~~~~~~~  100 (257)
                      .+|..+++.++..      +||+.+++.+
T Consensus       162 ~~g~~i~~~~~~~~~~~~~~w~~~~~~~~  190 (447)
T d1pw4a_         162 NVGGGIPPLLFLLGMAWFNDWHAALYMPA  190 (447)
T ss_dssp             HHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             chhhhhhhhhhhhHhhhhhcccccchhhh
Confidence            9998888876654      7888777665

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=5.6e-10  Score=88.11  Aligned_cols=99  Identities=11%  Similarity=0.042  Sum_probs=88.5

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHH-HHHHHHh
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFF-QMFLTLG   80 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G   80 (257)
                      +.||+|||+.+.++.++.+++.+...+.++.+.+.+..++.|++.+...+....++.|.+|+++|++..++. +....+|
T Consensus       282 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (417)
T d1pv7a_         282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred             hhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999999999999999974 5667788


Q ss_pred             HHHHHHhhhh-----hHHHHHhhcC
Q psy7965          81 VLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        81 ~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+++.+.+.     ||+..+++.+
T Consensus       362 ~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         362 MIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            8888877665     7888877665

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=4.4e-11  Score=94.67  Aligned_cols=98  Identities=12%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHhhhccccccccceeeeccCCc--cchhhhhhHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILFAQNIYML----FVARFIAGVGTGGLCAIIPMFIGEIAES--SIRGALGSFFQM   75 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~   75 (257)
                      ++||+|||++++++..+..++..+..+..+....    ++.+.+.+.+.+...........+..++  +++....+....
T Consensus        66 l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (417)
T d1pv7a_          66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM  145 (417)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhh
Confidence            6899999999999999999998888887665543    4555555555555554444444444333  334455566667


Q ss_pred             HHHHhHHHHHHhhhh----hHHHHHhhc
Q psy7965          76 FLTLGVLYVYCLGLS----TYTVIAIGC   99 (257)
Q Consensus        76 ~~~~G~~~~~~~~~~----~Wr~~~~~~   99 (257)
                      ....+..+++.++..    +|+..+...
T Consensus       146 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  173 (417)
T d1pv7a_         146 FGCVGWALGASIVGIMFTINNQFVFWLG  173 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hhccccccccccccccccccccccccch
Confidence            777777777777665    455444333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.3e-07  Score=73.01  Aligned_cols=99  Identities=17%  Similarity=0.094  Sum_probs=71.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHhhhccccccccceeeeccCCccchhhhhhHHHHH
Q psy7965           2 FADKFGRKPVILAFCFPYILSWLLILF-----AQNIYMLFVARFIAGVGTGGLCAIIPMFIGEIAESSIRGALGSFFQMF   76 (257)
Q Consensus         2 l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~   76 (257)
                      +.||++||+..........+..+....     ..+.+...++-++.|++.+...+....+..|.+|+++|+.+.++.+..
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         308 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             hhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            579999887555444433333322222     346777788888899998888888899999999999999999998776


Q ss_pred             HHH-hHHHHHHhhhh-----hHHHHHhhcC
Q psy7965          77 LTL-GVLYVYCLGLS-----TYTVIAIGCL  100 (257)
Q Consensus        77 ~~~-G~~~~~~~~~~-----~Wr~~~~~~~  100 (257)
                      ..+ |.++++.+.+.     ||+..+.+..
T Consensus       388 ~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~  417 (447)
T d1pw4a_         388 GYLGGSVAASAIVGYTVDFFGWDGGFMVMI  417 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            665 56667776654     7887776554