Psyllid ID: psy7966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPKTLANLVCYPGIVQRRDCNNLVKIG
ccEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEEEEcccEEEEEEcccccEHHHHHHHHHHcccccHHHEEEEEEccccccccccccccccccEEEEEEccccccccEccccEEEEccccccHHHHHHHHHHccEEEccccccEccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccc
gillraqlpnqqrtsvhIRKGQTLLEALSKAMKlrnlkpemctaydsntgvslqwdtdsdhlpttEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLlfsghlcrtcgfkfhracnlavpYLCQVERIQQTYYQMLLASnaetsagilqmpsdyrpgsntrkhpktlanlvcypgivqrrdcnnlvkig
gillraqlpnqqrtsvhirkgQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPktlanlvcypgivqrrdcnnlvkig
GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPKTLANLVCYPGIVQRRDCNNLVKIG
***********************LLEAL**AMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNA************************TLANLVCYPGIVQRRDCNNLV***
*ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV***********PTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQV*****************************************************RRDCNN*V***
GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPKTLANLVCYPGIVQRRDCNNLVKIG
GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLAS*******************************V*********D********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDYRPGSNTRKHPKTLANLVCYPGIVQRRDCNNLVKIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query194 2.2.26 [Sep-21-2011]
P11346 782 Raf homolog serine/threon yes N/A 0.773 0.191 0.460 5e-33
P15056 766 Serine/threonine-protein yes N/A 0.634 0.160 0.460 3e-26
P34908 807 Serine/threonine-protein N/A N/A 0.634 0.152 0.460 3e-26
Q04982 806 Serine/threonine-protein yes N/A 0.634 0.152 0.460 4e-26
P28028 804 Serine/threonine-protein yes N/A 0.634 0.152 0.460 4e-26
P05625 647 RAF proto-oncogene serine no N/A 0.757 0.227 0.389 5e-25
P11345 648 RAF proto-oncogene serine no N/A 0.762 0.228 0.362 5e-24
Q5R5M7 648 RAF proto-oncogene serine no N/A 0.762 0.228 0.362 5e-24
P04049 648 RAF proto-oncogene serine no N/A 0.762 0.228 0.362 5e-24
A7E3S4 648 RAF proto-oncogene serine no N/A 0.762 0.228 0.362 5e-24
>sp|P11346|KRAF1_DROME Raf homolog serine/threonine-protein kinase phl OS=Drosophila melanogaster GN=phl PE=1 SV=5 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 2/152 (1%)

Query: 2   ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL-QWDTDSD 60
           ILLRA LPNQQRTSV +  G  L +AL KA+KLR L P+MC    +++G  +  W TD  
Sbjct: 184 ILLRAHLPNQQRTSVEVISGVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIG 243

Query: 61  HLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
            L   EI V + ++FP   +I+H I R+TFF++ FC+ C +LLF+G  C  C F+FH+ C
Sbjct: 244 TLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYCSQCNFRFHQRC 303

Query: 121 NLAVPYLCQVERIQQTYYQMLLASNAETSAGI 152
              VP LCQ   +  +YYQ+LLA N +   G 
Sbjct: 304 ANRVPMLCQPFPM-DSYYQLLLAENPDNGVGF 334
Serine/threonine kinase required in the early embryo for the formation of terminal structure. Also required during the proliferation of imaginal cells. May act downstream of ras1 in the sev signal transduction pathway.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|P15056|BRAF_HUMAN Serine/threonine-protein kinase B-raf OS=Homo sapiens GN=BRAF PE=1 SV=4 Back     alignment and function description
>sp|P34908|BRAF_COTJA Serine/threonine-protein kinase B-raf OS=Coturnix coturnix japonica GN=BRAF PE=2 SV=1 Back     alignment and function description
>sp|Q04982|BRAF_CHICK Serine/threonine-protein kinase B-raf OS=Gallus gallus GN=BRAF PE=1 SV=1 Back     alignment and function description
>sp|P28028|BRAF_MOUSE Serine/threonine-protein kinase B-raf OS=Mus musculus GN=Braf PE=1 SV=3 Back     alignment and function description
>sp|P05625|RAF1_CHICK RAF proto-oncogene serine/threonine-protein kinase OS=Gallus gallus GN=RAF1 PE=2 SV=1 Back     alignment and function description
>sp|P11345|RAF1_RAT RAF proto-oncogene serine/threonine-protein kinase OS=Rattus norvegicus GN=Raf1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R5M7|RAF1_PONAB RAF proto-oncogene serine/threonine-protein kinase OS=Pongo abelii GN=RAF1 PE=2 SV=1 Back     alignment and function description
>sp|P04049|RAF1_HUMAN RAF proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=RAF1 PE=1 SV=1 Back     alignment and function description
>sp|A7E3S4|RAF1_BOVIN RAF proto-oncogene serine/threonine-protein kinase OS=Bos taurus GN=RAF1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
156545732 789 PREDICTED: raf homolog serine/threonine- 0.881 0.216 0.519 2e-44
383848403 715 PREDICTED: raf homolog serine/threonine- 0.963 0.261 0.473 2e-44
350416306 781 PREDICTED: raf homolog serine/threonine- 0.881 0.218 0.502 2e-44
340711505 782 PREDICTED: raf homolog serine/threonine- 0.876 0.217 0.505 4e-44
380030049 715 PREDICTED: raf homolog serine/threonine- 0.881 0.239 0.502 4e-44
66554913 715 PREDICTED: raf homolog serine/threonine- 0.876 0.237 0.505 5e-44
307211389 354 Raf-like protein serine/threonine-protei 0.953 0.522 0.473 7e-43
307189988 811 Raf-like protein serine/threonine-protei 0.953 0.228 0.468 7e-43
189241664 885 PREDICTED: similar to AGAP004699-PA [Tri 0.881 0.193 0.491 2e-39
270001107 670 hypothetical protein TcasGA2_TC011404 [T 0.886 0.256 0.482 3e-39
>gi|156545732|ref|XP_001605107.1| PREDICTED: raf homolog serine/threonine-protein kinase phl-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 119/179 (66%), Gaps = 8/179 (4%)

Query: 3   LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY---DSNTGVSLQWDTDS 59
           LLRA LPNQQRTSV +R+  +L +AL+KAMKLRNL  EMC  Y    ++    + WDTD 
Sbjct: 196 LLRAHLPNQQRTSVQVRESLSLRDALAKAMKLRNLTTEMCVVYIVASNDAKYPIPWDTDI 255

Query: 60  DHLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRA 119
             L   EI VE+ ++FP   +I HN  R+TFF++AFC+ CHKLLF G  CRTC ++FH+ 
Sbjct: 256 SSLECDEISVEILDKFPITTSISHNFVRKTFFSLAFCECCHKLLFQGFYCRTCNYRFHQR 315

Query: 120 CNLAVPYLCQVERIQQTYYQMLLASNAETSAGILQMPSDY--RP--GSNTR-KHPKTLA 173
           C   VP LC   R+Q  YYQ LLA N E +AGILQ+PS Y   P   +N+R + P+TLA
Sbjct: 316 CANGVPALCHQVRMQDAYYQALLAHNPERTAGILQLPSGYGISPSLATNSRPRPPRTLA 374

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383848403|ref|XP_003699840.1| PREDICTED: raf homolog serine/threonine-protein kinase phl-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350416306|ref|XP_003490906.1| PREDICTED: raf homolog serine/threonine-protein kinase phl-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711505|ref|XP_003394316.1| PREDICTED: raf homolog serine/threonine-protein kinase phl-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380030049|ref|XP_003698671.1| PREDICTED: raf homolog serine/threonine-protein kinase phl-like [Apis florea] Back     alignment and taxonomy information
>gi|66554913|ref|XP_396892.2| PREDICTED: raf homolog serine/threonine-protein kinase phl [Apis mellifera] Back     alignment and taxonomy information
>gi|307211389|gb|EFN87516.1| Raf-like protein serine/threonine-protein kinase dRAF-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307189988|gb|EFN74224.1| Raf-like protein serine/threonine-protein kinase dRAF-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|189241664|ref|XP_966969.2| PREDICTED: similar to AGAP004699-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270001107|gb|EEZ97554.1| hypothetical protein TcasGA2_TC011404 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
FB|FBgn0003079 782 phl "pole hole" [Drosophila me 0.768 0.190 0.463 9.7e-32
UNIPROTKB|F1LZI6360 Braf "Protein Braf" [Rattus no 0.634 0.341 0.460 1.2e-26
ZFIN|ZDB-GENE-040805-1 817 braf "v-raf murine sarcoma vir 0.695 0.165 0.437 5.5e-26
ZFIN|ZDB-GENE-050102-2 608 araf "v-raf murine sarcoma 361 0.773 0.246 0.402 7.2e-26
UNIPROTKB|F1NJV6 718 BRAF "Serine/threonine-protein 0.634 0.171 0.460 1.1e-25
UNIPROTKB|F1SRQ1 754 BRAF "Uncharacterized protein" 0.634 0.163 0.460 1.2e-25
UNIPROTKB|F1P1L9 760 BRAF "Serine/threonine-protein 0.634 0.161 0.460 1.3e-25
UNIPROTKB|F1P873 761 BRAF "Uncharacterized protein" 0.634 0.161 0.460 1.3e-25
UNIPROTKB|P15056 766 BRAF "Serine/threonine-protein 0.634 0.160 0.460 1.3e-25
UNIPROTKB|F1P874 772 BRAF "Uncharacterized protein" 0.634 0.159 0.460 1.3e-25
FB|FBgn0003079 phl "pole hole" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 357 (130.7 bits), Expect = 9.7e-32, P = 9.7e-32
 Identities = 70/151 (46%), Positives = 95/151 (62%)

Query:     2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL-QWDTDSD 60
             ILLRA LPNQQRTSV +  G  L +AL KA+KLR L P+MC    +++G  +  W TD  
Sbjct:   184 ILLRAHLPNQQRTSVEVISGVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIG 243

Query:    61 HLPTTEIRVEVQERFPAAINIEHNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRAC 120
              L   EI V + ++FP   +I+H I R+TFF++ FC+ C +LLF+G  C  C F+FH+ C
Sbjct:   244 TLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYCSQCNFRFHQRC 303

Query:   121 NLAVPYLCQVERIQQTYYQMLLASNAETSAG 151
                VP LCQ   +  +YYQ+LLA N +   G
Sbjct:   304 ANRVPMLCQPFPMD-SYYQLLLAENPDNGVG 333
GO:0007362 "terminal region determination" evidence=IMP
GO:0007165 "signal transduction" evidence=IMP
GO:0004674 "protein serine/threonine kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI
GO:0008069 "dorsal/ventral axis specification, ovarian follicular epithelium" evidence=IMP
GO:0008293 "torso signaling pathway" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0035309 "wing and notum subfield formation" evidence=IGI
GO:0007283 "spermatogenesis" evidence=IMP
GO:0035171 "lamellocyte differentiation" evidence=IMP;TAS
GO:0042386 "hemocyte differentiation" evidence=IGI;IMP
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
GO:0007472 "wing disc morphogenesis" evidence=IMP
GO:0007428 "primary branching, open tracheal system" evidence=TAS
GO:0030097 "hemopoiesis" evidence=TAS
GO:0007369 "gastrulation" evidence=IMP
GO:0005057 "receptor signaling protein activity" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0040014 "regulation of multicellular organism growth" evidence=IMP
GO:0002168 "instar larval development" evidence=IMP
GO:0046534 "positive regulation of photoreceptor cell differentiation" evidence=IMP
GO:0007298 "border follicle cell migration" evidence=IGI
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0007552 "metamorphosis" evidence=IMP
UNIPROTKB|F1LZI6 Braf "Protein Braf" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040805-1 braf "v-raf murine sarcoma viral oncogene homolog B1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050102-2 araf "v-raf murine sarcoma 3611 viral oncogene homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJV6 BRAF "Serine/threonine-protein kinase B-raf" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRQ1 BRAF "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1L9 BRAF "Serine/threonine-protein kinase B-raf" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P873 BRAF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P15056 BRAF "Serine/threonine-protein kinase B-raf" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P874 BRAF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
cd0181674 cd01816, Raf_RBD, Ubiquitin domain of Raf serine/t 2e-19
pfam0219671 pfam02196, RBD, Raf-like Ras-binding domain 4e-13
smart0045570 smart00455, RBD, Raf-like Ras-binding domain 4e-13
cd0176072 cd01760, RBD, Ubiquitin-like domain of RBD-like S/ 8e-13
cd0002950 cd00029, C1, Protein kinase C conserved region 1 ( 3e-05
pfam0013053 pfam00130, C1_1, Phorbol esters/diacylglycerol bin 6e-05
smart0010950 smart00109, C1, Protein kinase C conserved region 1e-04
>gnl|CDD|176411 cd01816, Raf_RBD, Ubiquitin domain of Raf serine/threonine kinases Back     alignment and domain information 
 Score = 77.4 bits (191), Expect = 2e-19
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 3  LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY----DSNTGVSLQWDTD 58
          L+R  LPN+QRT V++R G TL +AL+KA+K+R L+PE C  +     S+  + + WDTD
Sbjct: 1  LIRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWDTD 60

Query: 59 SDHLPTTEIRVEV 71
             L   E++VEV
Sbjct: 61 ISSLIGEELQVEV 73

The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells. Length = 74
>gnl|CDD|202147 pfam02196, RBD, Raf-like Ras-binding domain Back     alignment and domain information
>gnl|CDD|128731 smart00455, RBD, Raf-like Ras-binding domain Back     alignment and domain information
>gnl|CDD|176358 cd01760, RBD, Ubiquitin-like domain of RBD-like S/T kinases Back     alignment and domain information
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) Back     alignment and domain information
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1 domain) Back     alignment and domain information
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
cd0181674 Raf_RBD Ubiquitin domain of Raf serine/threonine k 100.0
KOG0193|consensus 678 99.97
cd0181773 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS 99.92
PF0219671 RBD: Raf-like Ras-binding domain; InterPro: IPR003 99.92
cd0176072 RBD Ubiquitin-like domain of RBD-like S/T kinases. 99.9
smart0045570 RBD Raf-like Ras-binding domain. 99.87
KOG4236|consensus 888 99.45
PF0013053 C1_1: Phorbol esters/diacylglycerol binding domain 99.39
KOG4236|consensus 888 99.29
cd0002950 C1 Protein kinase C conserved region 1 (C1) . Cyst 99.19
KOG0696|consensus 683 99.18
smart0010949 C1 Protein kinase C conserved region 1 (C1) domain 99.14
KOG0696|consensus 683 98.86
KOG1011|consensus 1283 98.69
KOG0694|consensus 694 98.44
cd0181877 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo 98.28
KOG0694|consensus 694 97.96
KOG0695|consensus 593 97.66
KOG2996|consensus 865 97.65
KOG4239|consensus 348 97.41
KOG3564|consensus 604 96.84
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 96.76
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 95.35
KOG1169|consensus 634 94.83
PF0874643 zf-RING-like: RING-like domain; InterPro: IPR01485 94.81
PF0310730 C1_2: C1 domain; InterPro: IPR004146 This short do 94.63
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 94.16
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 93.82
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 93.26
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 92.98
KOG1453|consensus 918 91.11
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 90.04
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 89.6
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 86.94
PF0215035 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I 85.16
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 84.54
smart0066152 RPOL9 RNA polymerase subunit 9. 83.95
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases Back     alignment and domain information 
Probab=100.00  E-value=9.8e-36  Score=217.39  Aligned_cols=70  Identities=47%  Similarity=0.808  Sum_probs=66.4

Q ss_pred             eEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCC----CcccCCCCCCCCCCcceeeeee
Q psy7966           3 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG----VSLQWDTDSDHLPTTEIRVEVQ   72 (194)
Q Consensus         3 ~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~----~~i~w~tD~~~L~~eel~V~~~   72 (194)
                      +|||||||||||+|+|||||||+|||+||||+|||+||||+||+.+++    ..|+||||+++|.|+||+||++
T Consensus         1 ~ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~td~~~L~geEL~V~~l   74 (74)
T cd01816           1 LIRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWDTDISSLIGEELQVEVL   74 (74)
T ss_pred             CeeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchhhhhhhccCceEEEEeC
Confidence            589999999999999999999999999999999999999999999866    4599999999999999999973

The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
>KOG0193|consensus Back     alignment and domain information
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14 Back     alignment and domain information
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras Back     alignment and domain information
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases Back     alignment and domain information
>smart00455 RBD Raf-like Ras-binding domain Back     alignment and domain information
>KOG4236|consensus Back     alignment and domain information
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger Back     alignment and domain information
>KOG4236|consensus Back     alignment and domain information
>cd00029 C1 Protein kinase C conserved region 1 (C1) Back     alignment and domain information
>KOG0696|consensus Back     alignment and domain information
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) Back     alignment and domain information
>KOG0696|consensus Back     alignment and domain information
>KOG1011|consensus Back     alignment and domain information
>KOG0694|consensus Back     alignment and domain information
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor Back     alignment and domain information
>KOG0694|consensus Back     alignment and domain information
>KOG0695|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG4239|consensus Back     alignment and domain information
>KOG3564|consensus Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>KOG1169|consensus Back     alignment and domain information
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) Back     alignment and domain information
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>KOG1453|consensus Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2 Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>smart00661 RPOL9 RNA polymerase subunit 9 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
1faq_A52 Raf-1 Cysteine Rich Domain, Nmr, 27 Structures Leng 1e-09
2l05_A95 Solution Nmr Structure Of The Ras-Binding Domain Of 4e-09
3ny5_A96 Crystal Structure Of The Rbd Domain Of SerineTHREON 7e-09
1c1y_B77 Crystal Structure Of Rap.Gmppnp In Complex With The 4e-08
1rfa_A79 Nmr Solution Structure Of The Ras-Binding Domain Of 5e-08
1gua_B81 Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 5e-08
1rrb_A107 The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1 St 6e-08
3kud_B81 Complex Of Ras-Gdp With Rafrbd(A85k) Length = 81 2e-07
3kuc_B81 Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R) 3e-07
1wxm_A86 Solution Structure Of The N-Terminal Ras-Binding Do 4e-06
3pfq_A 674 Crystal Structure And Allosteric Activation Of Prot 3e-04
>pdb|1FAQ|A Chain A, Raf-1 Cysteine Rich Domain, Nmr, 27 Structures Length = 52 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 83  HNITRRTFFAIAFCDACHKLLFSGHLCRTCGFKFHRACNLAVPYLC 128
           HN  R+TF  +AFCD C K L +G  C+TCG+KFH  C+  VP +C
Sbjct: 4   HNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMC 49
>pdb|2L05|A Chain A, Solution Nmr Structure Of The Ras-Binding Domain Of SerineTHREONINE- Protein Kinase B-Raf From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4694f Length = 95 Back     alignment and structure
>pdb|3NY5|A Chain A, Crystal Structure Of The Rbd Domain Of SerineTHREONINE-Protein Kinase B-Raf From Homo Sapiens. Northeast Structural Genomics Consortium Target Hr4694f Length = 96 Back     alignment and structure
>pdb|1C1Y|B Chain B, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 77 Back     alignment and structure
>pdb|1RFA|A Chain A, Nmr Solution Structure Of The Ras-Binding Domain Of C-Raf-1 Length = 79 Back     alignment and structure
>pdb|1GUA|B Chain B, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 81 Back     alignment and structure
>pdb|1RRB|A Chain A, The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1 Structure Length = 107 Back     alignment and structure
>pdb|3KUD|B Chain B, Complex Of Ras-Gdp With Rafrbd(A85k) Length = 81 Back     alignment and structure
>pdb|3KUC|B Chain B, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R) Length = 81 Back     alignment and structure
>pdb|1WXM|A Chain A, Solution Structure Of The N-Terminal Ras-Binding Domain (Rbd) In Human A-Raf Kinase Length = 86 Back     alignment and structure
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
1rrb_A107 RAF-1 RBD, RAF proto-oncogene serine/threonine-pro 1e-25
2l05_A95 Serine/threonine-protein kinase B-RAF; structural 4e-25
3ny5_A96 Serine/threonine-protein kinase B-RAF; NESG, struc 9e-25
1c1y_B77 Proto-onkogene serine/threonine protein kinase RAF 5e-23
1wxm_A86 A-RAF proto-oncogene serine/threonine-protein kina 5e-23
1faq_A52 RAF-1; transferase, serine/threonine-protein kinas 6e-12
1kbe_A49 Kinase suppressor of RAS; KSR, cysteine-rich domai 2e-08
1y8f_A66 UNC-13 homolog A, MUNC13-1; cysteine-rich domain, 3e-08
2eli_A85 Protein kinase C alpha type; PKC-alpha, PKC-A, str 3e-08
2enz_A65 NPKC-theta, protein kinase C theta type; zinc bind 3e-07
1ptq_A50 Protein kinase C delta type; phosphotransferase; 1 5e-07
2db6_A74 SH3 and cysteine rich domain 3; STAC3, C1 domain, 3e-06
2row_A84 RHO-associated protein kinase 2; ATP-binding, coil 4e-06
2fnf_X72 Putative RAS effector NORE1; zinc, signal transduc 5e-06
1rfh_A59 RAS association (ralgds/AF-6) domain family 5; zin 6e-06
3pfq_A 674 PKC-B, PKC-beta, protein kinase C beta type; phosp 3e-05
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 4e-05
2enn_A77 NPKC-theta, protein kinase C theta type; zinc bind 7e-05
2yuu_A83 NPKC-delta, protein kinase C delta type; metal bin 8e-05
3nw0_A238 Non-structural maintenance of chromosomes element 1e-04
3cxl_A 463 N-chimerin; SH2, RHO-GAP, structural genomics cons 7e-04
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 8e-04
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5 Length = 107 Back     alignment and structure
 Score = 94.4 bits (234), Expect = 1e-25
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 3   LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDT 57
            +R  LPN+QRT V++R G +L + L KA+K+R L+PE C  +            L W+T
Sbjct: 20  TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNT 79

Query: 58  DSDHLPTTEIRVEVQERFPAAINIEHN 84
           D+  L   E++V+  +   A  +  H+
Sbjct: 80  DAASLIGEELQVDFLKLAAALEHHHHH 106
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 95 Back     alignment and structure
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} Length = 96 Back     alignment and structure
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B* Length = 77 Back     alignment and structure
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Length = 86 Back     alignment and structure
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A Length = 52 Back     alignment and structure
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A Length = 49 Back     alignment and structure
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus} Length = 66 Back     alignment and structure
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Length = 65 Back     alignment and structure
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A* Length = 50 Back     alignment and structure
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 84 Back     alignment and structure
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus} Length = 72 Back     alignment and structure
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus} Length = 59 Back     alignment and structure
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
3ny5_A96 Serine/threonine-protein kinase B-RAF; NESG, struc 100.0
1wxm_A86 A-RAF proto-oncogene serine/threonine-protein kina 100.0
2l05_A95 Serine/threonine-protein kinase B-RAF; structural 100.0
1rrb_A107 RAF-1 RBD, RAF proto-oncogene serine/threonine-pro 100.0
1c1y_B77 Proto-onkogene serine/threonine protein kinase RAF 100.0
1faq_A52 RAF-1; transferase, serine/threonine-protein kinas 99.69
1rfh_A59 RAS association (ralgds/AF-6) domain family 5; zin 99.69
1kbe_A49 Kinase suppressor of RAS; KSR, cysteine-rich domai 99.65
2fnf_X72 Putative RAS effector NORE1; zinc, signal transduc 99.63
2enz_A65 NPKC-theta, protein kinase C theta type; zinc bind 99.62
1y8f_A66 UNC-13 homolog A, MUNC13-1; cysteine-rich domain, 99.61
1ptq_A50 Protein kinase C delta type; phosphotransferase; 1 99.61
2db6_A74 SH3 and cysteine rich domain 3; STAC3, C1 domain, 99.6
2enn_A77 NPKC-theta, protein kinase C theta type; zinc bind 99.58
2yuu_A83 NPKC-delta, protein kinase C delta type; metal bin 99.57
2eli_A85 Protein kinase C alpha type; PKC-alpha, PKC-A, str 99.57
3uej_A65 NPKC-delta, protein kinase C delta type; proteine 99.56
4b6d_A61 RAC GTPase-activating protein 1; signaling protein 99.49
2row_A84 RHO-associated protein kinase 2; ATP-binding, coil 99.48
3pfq_A 674 PKC-B, PKC-beta, protein kinase C beta type; phosp 99.13
3cxl_A 463 N-chimerin; SH2, RHO-GAP, structural genomics cons 99.09
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 99.01
3pfq_A 674 PKC-B, PKC-beta, protein kinase C beta type; phosp 99.01
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 98.94
1r79_A84 Diacylglycerol kinase, delta; C1 domain, cystein-r 98.08
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 96.72
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 93.6
3nw0_A238 Non-structural maintenance of chromosomes element 93.14
1wfy_A104 Regulator of G-protein signaling 14; RAP1/RAP2 int 92.68
1v5n_A89 PDI-like hypothetical protein AT1G60420; DC1 domai 90.15
1xlq_A106 Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored 84.29
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 83.29
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 83.04
2bt6_A108 Adrenodoxin 1; ruthenium(II) bipyridyl complex, in 82.46
3lxf_A104 Ferredoxin; iron, iron-sulfur, metal-binding, meta 81.73
1uwm_A106 Ferredoxin VI, FDVI; electron transport, metal-bin 80.95
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 80.55
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0 Back     alignment and structure
Probab=100.00  E-value=3.1e-38  Score=239.48  Aligned_cols=81  Identities=42%  Similarity=0.680  Sum_probs=72.4

Q ss_pred             ceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecCCC--CcccCCCCCCCCCCcceeeeeehhcCCCC
Q psy7966           2 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDHLPTTEIRVEVQERFPAAI   79 (194)
Q Consensus         2 ~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~~~--~~i~w~tD~~~L~~eel~V~~~~~~p~~~   79 (194)
                      ++|||||||||||+|+|||||||||||+||||+|||+||||+||+..++  ..|+||+|+++|+||||+||++|.||+.+
T Consensus        14 ~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~geEL~Ve~ld~~pltt   93 (96)
T 3ny5_A           14 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENVPLTT   93 (96)
T ss_dssp             CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CEEECTTBBGGGGTTCEEEEEECCCCCBC-
T ss_pred             CEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcCcccccccchhcccceEEehhhhcCCCcc
Confidence            6899999999999999999999999999999999999999999999764  44999999999999999999999999965


Q ss_pred             Ccccee
Q psy7966          80 NIEHNI   85 (194)
Q Consensus        80 ~~~H~F   85 (194)
                         |||
T Consensus        94 ---HnF   96 (96)
T 3ny5_A           94 ---HNF   96 (96)
T ss_dssp             ------
T ss_pred             ---cCC
Confidence               988
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5 Back     alignment and structure
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B* Back     alignment and structure
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A Back     alignment and structure
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus} Back     alignment and structure
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A Back     alignment and structure
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus} Back     alignment and structure
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus} Back     alignment and structure
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A* Back     alignment and structure
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A* Back     alignment and structure
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens} Back     alignment and structure
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Back     alignment and structure
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1 Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Back     alignment and structure
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C* Back     alignment and structure
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0 Back     alignment and structure
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 194
d1wxma173 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/thre 7e-18
d1c1yb_77 d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [Ta 9e-18
d1faqa_52 g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 1e-08
d1r79a_84 g.49.1.1 (A:) Diacylglycerol kinase delta {Human ( 1e-07
d1kbea_49 g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse 5e-07
d1ptqa_50 g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {M 1e-06
d1xa6a362 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain 2e-06
d1tbna_66 g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus 3e-06
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (177), Expect = 7e-18
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 3  LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY--DSNTGVSLQWDTDSD 60
           ++  LPN+QRT V +R G ++ ++L KA+K+R L  + C  Y           WDT   
Sbjct: 2  TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIA 61

Query: 61 HLPTTEIRVEV 71
           L   E+ VEV
Sbjct: 62 PLDGEELIVEV 72
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} Length = 49 Back     information, alignment and structure
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
d1c1yb_77 c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1wxma173 A-Raf proto-oncogene serine/threonine-protein kina 99.95
d1kbea_49 Kinase suppressor of Ras, Ksr {Mouse (Mus musculus 99.62
d1faqa_52 RAF-1 {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1tbna_66 Protein kinase c-gamma {Rat (Rattus rattus) [TaxId 99.49
d1ptqa_50 Protein kinase C-delta (PKCdelta) {Mouse (Mus musc 99.47
d1xa6a362 Beta-chimaerin, middle domain {Human (Homo sapiens 99.45
d1r79a_84 Diacylglycerol kinase delta {Human (Homo sapiens) 99.35
d1wfya_104 Regulator of G-protein signaling 14, RGS14 {Mouse 96.64
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 96.43
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 91.88
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 91.54
d1e9ma_106 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo 85.73
d2bt6a1104 Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} 85.43
d1b9ra_105 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T 82.74
d1jq4a_98 Methane monooxygenase reductase N-terminal domain 81.68
d1xlqa1106 2Fe-2S ferredoxin {Pseudomonas putida, putidaredox 81.18
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.2e-30  Score=184.71  Aligned_cols=72  Identities=38%  Similarity=0.659  Sum_probs=66.8

Q ss_pred             CceEEEEcCCCCeeeEEeecCCcHHHHHHHHHHhcCCCCCccEEEecC-----CCCcccCCCCCCCCCCcceeeeee
Q psy7966           1 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN-----TGVSLQWDTDSDHLPTTEIRVEVQ   72 (194)
Q Consensus         1 ~~~irv~LPn~QrT~V~v~~G~tl~~aL~Kalk~R~L~~~~C~Vy~~~-----~~~~i~w~tD~~~L~~eel~V~~~   72 (194)
                      |.+|||||||||+|+|+||||+||+|||+|+|++|||++++|.||+.+     +..+|+||+|++.|+|+||+||++
T Consensus         1 s~~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~~~~~~~g~~~~l~~d~d~s~L~g~El~Ve~l   77 (77)
T d1c1yb_           1 SNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL   77 (77)
T ss_dssp             CCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGTTCEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEeccCCCCcceeeccCCccccccCCEEEEEeC
Confidence            579999999999999999999999999999999999999999999963     334599999999999999999973
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Back     information, alignment and structure
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Back     information, alignment and structure
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Back     information, alignment and structure