Psyllid ID: psy7969

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MSDDDDVICVSSSDYSISDVEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTITNISPEYTPRTRDDKTDREQASSNFFKPPRTRDDKTDREQASSNFFKKREWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGYLNVEG
ccccccEEEEcccccccccccccccccccccccccHHHHHHHccccccEEEccccccEEEccccccccccccccccHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHcccccHHHHHHHcccccHHccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccEEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEcccccccccccccccccccccEEEEEEEEEcccccEEEEEccccccccEEEEEEEEEEcHHHHHHHHcccccccccccccccEEEEccccccccEEEcccccccEEcccccccccccEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccEEEEcccccccccccccc
ccccccEEEEEcccccEcccccccccHEEEccccHHHHHHHcccHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHccccEEEcccccccHHcHHccccHHHHHcccccccEEEEEccccccccEEEEEcccHHEHHHHHHHcccccEEEEEccHHcccccccccccccHHHHHHHHHHHHHccHHHcccEEcHcHccccccccEEEEEcccccccccccEEEEccEcccccccccccccccEcccccccccccccccccccccEcccccEccccccEEEccccccccccccccccHHHcccccEEEEEcccccccEEEcccccccccEEEEEEEEEEcHHHHHccccccEEEEccccccccccccccccccccEEEEHHHcccHHHHEcccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEccccccccccccccEEEEEEEcccHHHcccccccc
msddddvicvsssdysisdveqdtdvqeveqkpdlnqveikleepevkitsikseyptitnispeytprtrddktdreqassnffkpprtrddktdrEQASSNFFKkrewaslnsppiydfgkkspkrsllgspsiepkrstklnlgtklgcskdvknmkkeDQLEAVNSVQNVDVQEINGHirnfarnpqlikTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVttgnavapiyvinnvdlscvpanfthtnhnipaegvivneepiiwcecvdncrdssyccgqlndsvtaydenkrlrigqgtpiyecnknckcnascpnrviqLGTKIKLGIYKtyndcgwgvqtledipkgtyvTEYVGEILTYEAASLRDNQTYlfnldfngstsFVIDAYFNGSTSFVidacnfgnishfinhscdpnLAVYAAYIQCldpnlhrlplfairdiqkgeqLSFSYYKsvtkeptrpggsnkvkckceakncrgylnveg
msddddvicvsssdysisdveqdtdvqeveqkpdlnqveikleepevkitsikseyptitnispeytprtrddktdreqassnffkpprtrddktdrEQASsnffkkrewaslnsppiydfgkkspkrsllgspsiepkrstklnlgtklgcsKDVKNMKKEDQLEAVNSVQNVDVQEINGhirnfarnpqlIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSvtkeptrpggsnkvkckceakncrgylnveg
MsddddvicvsssdysisdvEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTITNISPEYTPRTRDDKTDREQASSNFFKPPRTRDDKTDREQASSNFFKKREWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGYLNVEG
**************************************************************************************************************************************************************************VQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKS***************CKCEAKNCRGY*****
****DDV*CVSS**************************************************************************************************ASLNSPPIYDFGKKSPKRSLLGSP************************************VQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKR***MENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPT*PGGSNKVKCKCEAKNCRGYLNVE*
*********VSSSDYSISDVEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTITNISPEYT*************SSNFFKP**************SNFFKKREWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV************VKCKCEAKNCRGYLNVEG
****DDVICVSSSDYSISDVEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTITNISPEYTPR*******REQASSNFFKPPRTRDDKTDREQASSNFFKKREWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGY*****
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MSDDDDVICVSSSDYSISDVEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTITNISPEYTPRTRDDKTDREQASSNFFKPPRTRDDKTDREQASSNFFKKREWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGYLNVEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
Q9EQQ0477 Histone-lysine N-methyltr yes N/A 0.519 0.547 0.413 5e-56
Q294B9633 Histone-lysine N-methyltr yes N/A 0.539 0.428 0.405 6e-56
Q32PH7410 Histone-lysine N-methyltr yes N/A 0.531 0.651 0.396 2e-53
Q28CQ7406 Histone-lysine N-methyltr yes N/A 0.531 0.657 0.39 2e-52
Q9H5I1410 Histone-lysine N-methyltr no N/A 0.531 0.651 0.396 3e-52
Q4R3E0410 Histone-lysine N-methyltr N/A N/A 0.531 0.651 0.396 4e-52
Q5F3W5407 Histone-lysine N-methyltr yes N/A 0.535 0.660 0.401 9e-52
Q6DGD3411 Histone-lysine N-methyltr yes N/A 0.547 0.669 0.417 3e-51
Q2NL30412 Histone-lysine N-methyltr no N/A 0.527 0.643 0.405 2e-49
Q5RB81412 Histone-lysine N-methyltr no N/A 0.527 0.643 0.405 2e-49
>sp|Q9EQQ0|SUV92_MOUSE Histone-lysine N-methyltransferase SUV39H2 OS=Mus musculus GN=Suv39h2 PE=1 SV=1 Back     alignment and function desciption
 Score =  219 bits (557), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 165/290 (56%), Gaps = 29/290 (10%)

Query: 223 LKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVD 282
           L+R++  +N    N    I+V N VDL   P +F + N   PA G+ +N E    C C D
Sbjct: 204 LQRWQDYLN-RRKNHKGMIFVENTVDLEGPPLDFYYINEYRPAPGISINSEATFGCSCTD 262

Query: 283 NCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLG 342
              D   CC      V AY++ ++++I  GTPIYECN  C+C   CPNR++Q GT+  L 
Sbjct: 263 CFFDK--CCPAEAGVVLAYNKKQQIKIQPGTPIYECNSRCRCGPECPNRIVQKGTQYSLC 320

Query: 343 IYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR----DNQ--TYLFNLDFNGS 396
           I+KT N CGWGV+TL  I + ++V EYVGE++T E A  R    DN+  TYLF+LD+   
Sbjct: 321 IFKTSNGCGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYE-- 378

Query: 397 TSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIR 456
                      S  F +DA  +GN+SHF+NHSCDPNL V++ +I  LD  L R+ LF+ R
Sbjct: 379 -----------SDEFTVDAARYGNVSHFVNHSCDPNLQVFSVFIDNLDTRLPRIALFSTR 427

Query: 457 DIQKGEQLSFSYYKSVTKEPT------RPGGSN-KVKCKCEAKNCRGYLN 499
            I  GE+L+F Y    + E +       P     + +CKC A+ CRGYLN
Sbjct: 428 TINAGEELTFDYQMKGSGEASSDSIDHSPAKKRVRTQCKCGAETCRGYLN 477
Histone methyltransferase that specifically trimethylates 'Lys-9' of histone H3 using monomethylated H3 'Lys-9' as substrate. H3 'Lys-9' trimethylation represents a specific tag for epigenetic transcriptional repression by recruiting HP1 (CBX1, CBX3 and/or CBX5) proteins to methylated histones. Mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions. H3 'Lys-9' trimethylation is also required to direct DNA methylation at pericentric repeats. SUV39H1 is targeted to histone H3 via its interaction with RB1 and is involved in many processes, such as cell cycle regulation, transcriptional repression and regulation of telomere length. May participate in regulation of higher order chromatin organization during spermatogenesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q294B9|SUV39_DROPS Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1 Back     alignment and function description
>sp|Q32PH7|SUV92_BOVIN Histone-lysine N-methyltransferase SUV39H2 OS=Bos taurus GN=SUV39H2 PE=2 SV=1 Back     alignment and function description
>sp|Q28CQ7|SUV92_XENTR Histone-lysine N-methyltransferase SUV39H2 OS=Xenopus tropicalis GN=suv39h2 PE=2 SV=2 Back     alignment and function description
>sp|Q9H5I1|SUV92_HUMAN Histone-lysine N-methyltransferase SUV39H2 OS=Homo sapiens GN=SUV39H2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R3E0|SUV92_MACFA Histone-lysine N-methyltransferase SUV39H2 OS=Macaca fascicularis GN=SUV39H2 PE=2 SV=2 Back     alignment and function description
>sp|Q5F3W5|SUV92_CHICK Histone-lysine N-methyltransferase SUV39H2 OS=Gallus gallus GN=SUV39H2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DGD3|SV91A_DANRE Histone-lysine N-methyltransferase SUV39H1-A OS=Danio rerio GN=suv39h1a PE=2 SV=2 Back     alignment and function description
>sp|Q2NL30|SUV91_BOVIN Histone-lysine N-methyltransferase SUV39H1 OS=Bos taurus GN=SUV39H1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RB81|SUV91_PONAB Histone-lysine N-methyltransferase SUV39H1 OS=Pongo abelii GN=SUV39H1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
321464251519 hypothetical protein DAPPUDRAFT_306854 [ 0.609 0.589 0.430 2e-69
84310031572 putative H3K9 methyltransferase [Cercopi 0.621 0.545 0.407 7e-69
84310040 615 putative H3K9 methyltransferase [Lepisma 0.573 0.468 0.417 1e-68
345483484503 PREDICTED: histone-lysine N-methyltransf 0.583 0.582 0.412 1e-62
112983034593 H3K9 methyltransferase-like [Bombyx mori 0.501 0.424 0.470 2e-62
84310036585 putative H3K9 methyltransferase [Enallag 0.541 0.464 0.438 2e-62
390353263399 PREDICTED: histone-lysine N-methyltransf 0.687 0.864 0.383 1e-61
357628615 969 putative heterochromatin protein isoform 0.486 0.251 0.466 4e-61
9409737567 putative heterochromatin protein [Scolio 0.501 0.444 0.459 1e-60
9409736 647 SU(VAR)3-9 [Scoliopteryx libatrix] 0.501 0.389 0.459 1e-60
>gi|321464251|gb|EFX75260.1| hypothetical protein DAPPUDRAFT_306854 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 199/337 (59%), Gaps = 31/337 (9%)

Query: 177 QEINGHIRNFARNPQ-LIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTG 235
           +EIN +     R  Q LI+  K     L  QL+T     +R+ Q+  LK +E EIN  T 
Sbjct: 183 EEINKYAFMVYRKKQKLIQMEKN----LMMQLLTRDFRQRRVDQLARLKEWEDEINEAT- 237

Query: 236 NAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLN 295
               P+ + NNVDL   P  FT+       +GV++ ++P+I CEC+D       CCG ++
Sbjct: 238 QGKPPVKIENNVDLDEPPVGFTYVTQCKAGDGVVIPDDPLIGCECLDCIDGRKTCCGPMS 297

Query: 296 DSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQ 355
            + +AY +  RL++  GTPIYECN  CKC   CPNRV+Q G+K+KL I++T N CGWGV+
Sbjct: 298 GTQSAYTKAGRLKVPVGTPIYECNSRCKCGPECPNRVVQRGSKLKLCIFRTSNGCGWGVK 357

Query: 356 TLEDIPKGTYVTEYVGEILTYEAASLR------DNQTYLFNLDFNGSTSFVIDAYFNGST 409
            LE I K ++V EYVGEI+T E A  R      + +TYLF+LDFN      ID  ++   
Sbjct: 358 ALETIRKNSFVIEYVGEIITNEEAEKRGVQYDSEGRTYLFDLDFND-----IDCVYS--- 409

Query: 410 SFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYY 469
              +DA + GN++HFINHSCDPNLAV+A +  C+DPN+ RL LFA RDI  GE+L+F Y 
Sbjct: 410 ---VDAAHQGNVAHFINHSCDPNLAVFAMWANCMDPNMPRLALFAQRDIHAGEELTFDYA 466

Query: 470 KSVTKEPTRPGGSNKV--------KCKCEAKNCRGYL 498
            S T+ P     +N V        +C+C A NCR  +
Sbjct: 467 SSKTENPQEKTAANSVAKEVTVKNECRCGAANCRKIM 503

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|84310031|emb|CAJ18345.1| putative H3K9 methyltransferase [Cercopis vulnerata] Back     alignment and taxonomy information
>gi|84310040|emb|CAJ18350.1| putative H3K9 methyltransferase [Lepisma saccharina] Back     alignment and taxonomy information
>gi|345483484|ref|XP_001601155.2| PREDICTED: histone-lysine N-methyltransferase SUV39H2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|112983034|ref|NP_001037070.1| H3K9 methyltransferase-like [Bombyx mori] gi|84310029|emb|CAJ18344.1| putative H3K9 methyltransferase [Bombyx mori] Back     alignment and taxonomy information
>gi|84310036|emb|CAJ18348.1| putative H3K9 methyltransferase [Enallagma cyathigerum] Back     alignment and taxonomy information
>gi|390353263|ref|XP_782949.3| PREDICTED: histone-lysine N-methyltransferase SUV39H2-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|357628615|gb|EHJ77887.1| putative heterochromatin protein isoform 2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|9409737|emb|CAB98199.1| putative heterochromatin protein [Scoliopteryx libatrix] Back     alignment and taxonomy information
>gi|9409736|emb|CAB98198.1| SU(VAR)3-9 [Scoliopteryx libatrix] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
UNIPROTKB|Q294B9633 Su(var)3-9 "Histone-lysine N-m 0.496 0.393 0.437 5.4e-55
RGD|1306969377 Suv39h2 "suppressor of variega 0.531 0.708 0.415 2.1e-54
MGI|MGI:1890396477 Suv39h2 "suppressor of variega 0.519 0.547 0.413 3.4e-54
UNIPROTKB|Q27I49350 LOC100738592 "Uncharacterized 0.543 0.78 0.404 6.3e-53
UNIPROTKB|Q32PH7410 SUV39H2 "Histone-lysine N-meth 0.547 0.670 0.404 3.5e-52
FB|FBgn0263755635 Su(var)3-9 "Suppressor of vari 0.649 0.513 0.354 1.9e-51
UNIPROTKB|Q9H5I1410 SUV39H2 "Histone-lysine N-meth 0.535 0.656 0.402 1.9e-51
ZFIN|ZDB-GENE-040801-111411 suv39h1a "suppressor of varieg 0.545 0.666 0.431 4e-51
UNIPROTKB|Q5F3W5407 SUV39H2 "Histone-lysine N-meth 0.535 0.660 0.414 5.1e-51
UNIPROTKB|E2RHJ2407 SUV39H2 "Uncharacterized prote 0.541 0.668 0.401 5.1e-51
UNIPROTKB|Q294B9 Su(var)3-9 "Histone-lysine N-methyltransferase Su(var)3-9" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 119/272 (43%), Positives = 160/272 (58%)

Query:   240 PIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECV----DNCRDSSYCCGQLN 295
             PI V NN DL  + + F +   NI  EGV   +  ++ C C     + C  SS CCG++ 
Sbjct:   371 PIRVENNWDLDTIDSGFKYIQKNIIGEGVPKPQAGLVGCMCRHQSGEQCTASSMCCGRMA 430

Query:   296 DSVTAYDENK-RLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGV 354
               + AYD    RLR+  G+ IYECN  C C+ SC NRV+Q G K  L ++KT N  GWGV
Sbjct:   431 GEIFAYDRTTGRLRLRPGSAIYECNSRCSCDESCTNRVVQNGRKHPLVLFKTSNGSGWGV 490

Query:   355 QTLEDIPKGTYVTEYVGEILTYEAASLR-----DN-QTYLFNLDFNGSTSFVIDAYFNGS 408
             +T + + KG +V EY+GEI+T E A+ R     DN +TYLF+LD+N S            
Sbjct:   491 RTPQPLKKGVFVCEYIGEIITCEEANERGKAYDDNGRTYLFDLDYNTSRD---------- 540

Query:   409 TSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
             + + +DA NFGNISHFINHSCDPNLAV+  +I+ L+  L  L  F IR I+ GE+LSF Y
Sbjct:   541 SEYTVDAANFGNISHFINHSCDPNLAVFPCWIEHLNTALPHLVFFTIRPIKAGEELSFDY 600

Query:   469 YKSVTKEPTRPGGSN--KVKCKCEAKNCRGYL 498
              ++  +E      S   +V+C+C A NCR  L
Sbjct:   601 IRADNEEVPYENLSTAARVQCRCGAANCRKVL 632
GO:0006325 "chromatin organization" evidence=ISS
GO:0006348 "chromatin silencing at telomere" evidence=ISS
GO:0016571 "histone methylation" evidence=ISS
GO:0030702 "chromatin silencing at centromere" evidence=ISS
GO:0042054 "histone methyltransferase activity" evidence=ISS
GO:0051567 "histone H3-K9 methylation" evidence=ISS
RGD|1306969 Suv39h2 "suppressor of variegation 3-9 homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890396 Suv39h2 "suppressor of variegation 3-9 homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q27I49 LOC100738592 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PH7 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0263755 Su(var)3-9 "Suppressor of variegation 3-9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H5I1 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-111 suv39h1a "suppressor of variegation 3-9 homolog 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3W5 SUV39H2 "Histone-lysine N-methyltransferase SUV39H2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHJ2 SUV39H2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.737
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 4e-31
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 3e-30
pfam00856113 pfam00856, SET, SET domain 2e-27
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 9e-16
smart0046898 smart00468, PreSET, N-terminal to some SET domains 3e-15
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information 
 Score =  115 bits (290), Expect = 4e-31
 Identities = 51/94 (54%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 240 PIYVINNVDLSCVPANFTHTNHNIPAEGV-IVNEEPIIWCECVDNCRDSSYC-CGQLNDS 297
           PI V+N VDL   P NFT+ N  IP  GV  +  E ++ C C D C DSS C C QLN  
Sbjct: 10  PIPVVNEVDLEGPPPNFTYINEYIPGSGVSDIPNEFLVGCSCKDGCPDSSNCACLQLNGG 69

Query: 298 VTAYDENKRLRIGQGTPIYECNKNCKCNASCPNR 331
             AYD+N RLR+  G PIYECN  CKC+ SCPNR
Sbjct: 70  GFAYDKNGRLRVEPGPPIYECNSRCKCDPSCPNR 103

This protein motif is a zinc binding motif. It contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilising SET domains. Length = 103
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
KOG1141|consensus 1262 100.0
KOG1082|consensus364 100.0
KOG4442|consensus 729 100.0
KOG1080|consensus1005 99.96
KOG1079|consensus739 99.93
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.89
KOG1083|consensus1306 99.83
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.78
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.73
KOG1085|consensus392 99.7
COG2940480 Proteins containing SET domain [General function p 99.67
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.54
cd0139560 HMT_MBD Methyl-CpG binding domains (MBD) present i 99.52
KOG1141|consensus1262 99.08
KOG1081|consensus463 98.92
KOG2589|consensus 453 98.77
smart0039177 MBD Methyl-CpG binding domain. Methyl-CpG binding 98.59
cd0012262 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and 98.34
cd0139773 HAT_MBD Methyl-CpG binding domains (MBD) present i 98.27
KOG2461|consensus 396 98.16
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 98.04
smart0050826 PostSET Cysteine-rich motif following a subset of 96.2
smart0057051 AWS associated with SET domains. subdomain of PRES 95.95
cd0139677 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me 94.85
KOG2084|consensus 482 93.05
>KOG1141|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.6e-52  Score=448.35  Aligned_cols=232  Identities=26%  Similarity=0.418  Sum_probs=187.6

Q ss_pred             cccccCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhhHHHHhhcccceeeeeeccc---ccc
Q psy7969         108 REWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEING---HIR  184 (502)
Q Consensus       108 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~v~l~~~~~---~~~  184 (502)
                      +.=|||++|++|+|+|+++++|+        .+++.+||.||+|||.+||+|.|+.+          ||+|+.|   |+.
T Consensus       591 ~g~npl~lp~~~~F~r~~a~~rs--------~~~~~fhv~yktpcg~~lr~~~el~r----------yL~et~c~flf~~  652 (1262)
T KOG1141|consen  591 PGGNPLNLPYFLTFHRIRASHRS--------AYIRDFHVEYKTPCGMPLRMRIELYR----------YLVETRCKFLFVI  652 (1262)
T ss_pred             CCCCccccceEEEeeehhhhhhh--------hhhhcceeeccCCCccchHHHHHHHH----------HHHHhcCcEEEEe
Confidence            34589999999999999999987        88999999999999999999999988          7888888   688


Q ss_pred             ccccccccccchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCeEEEeCCCCCCCCCCCEEeeeccC
Q psy7969         185 NFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIP  264 (502)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~ql~~l~~~e~~in~~~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~  264 (502)
                      +|++.|                    |+++.|+-|-  ++.+-.......|++.+||...|++|..++ +.|.|-.+.|+
T Consensus       653 ~f~~~~--------------------yV~~~r~~~p--~kp~~~~~Di~~g~e~vpis~~neids~~l-pq~ay~K~~ip  709 (1262)
T KOG1141|consen  653 GFDRAF--------------------YVVRHRAPNP--LKPGNRCTDIPCGREHVPISEKNEIDSHRL-PQAAYKKHMIP  709 (1262)
T ss_pred             ecccch--------------------heeecccCCC--cCCcceeccccCCccccccceeecccCcCC-ccchhheeecc
Confidence            888888                    4443333332  232222333346899999999999998654 58999999999


Q ss_pred             CCCccCCC--CCccccccCCCCCCCCcc-ccccCCCC--------c----cccCCCceeeCCCCceEecCCCCCCCCC-C
Q psy7969         265 AEGVIVNE--EPIIWCECVDNCRDSSYC-CGQLNDSV--------T----AYDENKRLRIGQGTPIYECNKNCKCNAS-C  328 (502)
Q Consensus       265 ~~gv~~~~--~~~~gC~C~~~C~~~~~C-C~~~~~~~--------~----aY~~~grL~~~~~~~I~ECn~~C~C~~~-C  328 (502)
                      +.+..++.  +.+.+|+|..+|.+...| |-++....        .    .| +.+||.....+.+|||+..|+|.+. |
T Consensus       710 ~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t~gy-kyKRl~e~~ptg~yEc~k~ckc~~~~C  788 (1262)
T KOG1141|consen  710 TNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVASTNGY-KYKRLIEIRPTGPYECLKACKCCGPDC  788 (1262)
T ss_pred             CCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccCcch-hhHHHHHhcCCCHHHHHHhhccCcHHH
Confidence            99877654  457899999999999888 66543111        1    12 4456655556779999999999877 9


Q ss_pred             CCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhc
Q psy7969         329 PNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR  382 (502)
Q Consensus       329 ~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r  382 (502)
                      .||++|+|.+++|++|+| ..+|||++++.+|.+|.|||.|.|.+++.+-++..
T Consensus       789 ~nrmvqhg~qvRlq~fkt-~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks  841 (1262)
T KOG1141|consen  789 LNRMVQHGYQVRLQRFKT-IHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKS  841 (1262)
T ss_pred             HHHHhhcCceeEeeeccc-cccccceEeeeecCCceEEEEecchhhhhhhchhh
Confidence            999999999999999999 67899999999999999999999998877666555

>KOG1082|consensus Back     alignment and domain information
>KOG4442|consensus Back     alignment and domain information
>KOG1080|consensus Back     alignment and domain information
>KOG1079|consensus Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083|consensus Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG1085|consensus Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression Back     alignment and domain information
>KOG1141|consensus Back     alignment and domain information
>KOG1081|consensus Back     alignment and domain information
>KOG2589|consensus Back     alignment and domain information
>smart00391 MBD Methyl-CpG binding domain Back     alignment and domain information
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity Back     alignment and domain information
>KOG2461|consensus Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>KOG2084|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 2e-53
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 3e-39
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 3e-39
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 6e-39
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 8e-39
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 2e-38
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 1e-37
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 2e-37
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 3e-34
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 5e-28
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 4e-16
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 8e-15
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-14
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 9e-13
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 165/300 (55%), Gaps = 33/300 (11%)
Query: 215 KRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEP 274
           K+  Q   L+R++ E+N    N    I+V N VDL   P++F + N   PA G+ +  E 
Sbjct: 19  KKAKQRIALQRWQDELN-RRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEA 77
Query: 275 IIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQ 334
              C C D       CC      + AY++N++++I  GTPIYECN  C+C   CPNR++Q
Sbjct: 78  TFGCSCTDCFFQK--CCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQ 135
Query: 335 LGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR----DNQ--TYL 388
            GT+  L I++T N  GWGV+TL  I + ++V EYVGE++T E A  R    DN+  TYL
Sbjct: 136 KGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYL 195
Query: 389 FNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLH 448
           F+LD+              S  F +DA  +GN+SHF+NHSCDPNL V+  +I  LD  L 
Sbjct: 196 FDLDYE-------------SDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLP 242
Query: 449 RLPLFAIRDIQKGEQLSFSYYK---------SVTKEPTRPGGSNKVKCKCEAKNCRGYLN 499
           R+ LF+ R I  GE+L+F Y           S+   P +     +  CKC A  CRGYLN
Sbjct: 243 RIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKK--RVRTVCKCGAVTCRGYLN 300
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 4e-88
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 2e-80
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 1e-77
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 2e-75
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 3e-75
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 2e-62
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 9e-62
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 5e-54
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 2e-40
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-37
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 7e-29
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-22
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 1e-17
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 8e-16
3db5_A151 PR domain zinc finger protein 4; methyltransferase 1e-14
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 5e-13
3dal_A196 PR domain zinc finger protein 1; methyltransferase 7e-13
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 6e-12
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 2e-09
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 3e-07
3ray_A237 PR domain-containing protein 11; structural genomi 1e-06
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 2e-06
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
 Score =  271 bits (695), Expect = 4e-88
 Identities = 115/298 (38%), Positives = 161/298 (54%), Gaps = 29/298 (9%)

Query: 215 KRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEP 274
           K+  Q   L+R++ E+N    N    I+V N VDL   P++F + N   PA G+ +  E 
Sbjct: 19  KKAKQRIALQRWQDELN-RRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEA 77

Query: 275 IIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQ 334
              C C D       CC      + AY++N++++I  GTPIYECN  C+C   CPNR++Q
Sbjct: 78  TFGCSCTDCFFQK--CCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQ 135

Query: 335 LGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ------TYL 388
            GT+  L I++T N  GWGV+TL  I + ++V EYVGE++T E A  R         TYL
Sbjct: 136 KGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYL 195

Query: 389 FNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLH 448
           F+LD+                 F +DA  +GN+SHF+NHSCDPNL V+  +I  LD  L 
Sbjct: 196 FDLDYESD-------------EFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLP 242

Query: 449 RLPLFAIRDIQKGEQLSFSY-------YKSVTKEPTRPGGSNKVKCKCEAKNCRGYLN 499
           R+ LF+ R I  GE+L+F Y         S + + +      +  CKC A  CRGYLN
Sbjct: 243 RIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.97
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.95
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.94
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.94
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.93
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.92
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.88
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.82
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.8
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.76
3ray_A237 PR domain-containing protein 11; structural genomi 99.6
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.5
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.75
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.75
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.67
3vxv_A69 Methyl-CPG-binding domain protein 4; methyl CPG bi 97.52
2ky8_A72 Methyl-CPG-binding domain protein 2; DNA binding d 97.01
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 96.81
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.06
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 95.8
1d9n_A75 Methyl-CPG-binding protein MBD1; PCM1, methylation 95.33
3c2i_A97 Methyl-CPG-binding protein 2; water mediated recog 94.75
1ub1_A133 MECP2, attachment region binding protein; chicken 93.66
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3e-63  Score=502.79  Aligned_cols=271  Identities=42%  Similarity=0.805  Sum_probs=236.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCeEEEeCCCCCCCCCCCEEeeeccCCCCccCCCCCccccccCCCCCCCCcccc
Q psy7969         213 YDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCG  292 (502)
Q Consensus       213 ~~~r~~ql~~l~~~e~~in~~~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~~~gv~~~~~~~~gC~C~~~C~~~~~CC~  292 (502)
                      +.+|.+|+.+|+.||+.+|. .+.++.||+|+|+||++.||.+|+||++++++.++.+......||+|.+ |.... ||.
T Consensus        17 ~~~~~~q~~~~~~w~~~~~~-~~~~~~~i~~~N~vd~~~~P~~f~yi~~~~~~~~~~~~~~~~~gC~C~~-C~~~~-cc~   93 (300)
T 2r3a_A           17 IVKKAKQRIALQRWQDELNR-RKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEATFGCSCTD-CFFQK-CCP   93 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCSSSCEEEECSSSCCCCCSSCEECSSCEECTTCCCC---CCCCCCSS-TTTSS-CHH
T ss_pred             HHhhhhhHHHHHHHHHHhcc-cccCCCCeEEEeCcCCccCCCCEEECcccccCCCCccCCCCCCCcCCcC-CCCCC-cch
Confidence            34899999999999999998 6777889999999999999999999999999999887666779999996 98754 676


Q ss_pred             ccCCCCccccCCCceeeCCCCceEecCCCCCCCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeE
Q psy7969         293 QLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGE  372 (502)
Q Consensus       293 ~~~~~~~aY~~~grL~~~~~~~I~ECn~~C~C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GE  372 (502)
                      ...+..++|+.+|+|.+..+.++|||++.|+|+..|.||++|+|...+|+||+|++++||||||+++|++|+||+||+||
T Consensus        94 ~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~vfrt~~~kG~Gl~A~~~I~~G~~I~EY~Ge  173 (300)
T 2r3a_A           94 AEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGE  173 (300)
T ss_dssp             HHTTSCCSBCTTSCBCSCTTCCEECCCTTSSCCTTCTTCSGGGCCCSCEEEEECSSSCCEEEEESSCBCTTCEEEEECCE
T ss_pred             hhccCccccccCCcEeccCCCcEEeCCCCCCCCCcCCCccccccccccEEEEEeCCCceEEEEeCccccCCCEeEEEeeE
Confidence            67778899999999999999999999999999999999999999999999999977899999999999999999999999


Q ss_pred             eeeHHHHhhcc------CcceeEeccCCCCCcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCC
Q psy7969         373 ILTYEAASLRD------NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPN  446 (502)
Q Consensus       373 VIt~~Eae~r~------~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~  446 (502)
                      ||+.++++.|.      +.+|+|.+++..             ..++|||+.+||+||||||||+||+.++.|++++.|.+
T Consensus       174 vi~~~ea~~R~~~y~~~~~~Y~f~l~~~~-------------~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v~~~~~d~~  240 (300)
T 2r3a_A          174 VITSEEAERRGQFYDNKGITYLFDLDYES-------------DEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTR  240 (300)
T ss_dssp             EEEHHHHHHHHHTCCHHHHHTEEECCSSC-------------SSEEEECSSEECGGGGCEECSSCSEEEEEEESSCCCTT
T ss_pred             EecHHHHHHHHHHhhhccccEEEEeecCC-------------ceEEEecccccChHHheecCCCCCEEEEEEEeccCCCC
Confidence            99999998875      468999887532             16899999999999999999999999988888877888


Q ss_pred             eeEEEEEEcCCCCCCCeEEEecCCCCCCCCCC-------CCCCCCeEeecCCCCcccccc
Q psy7969         447 LHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTR-------PGGSNKVKCKCEAKNCRGYLN  499 (502)
Q Consensus       447 ~pria~FAlRdI~aGEELT~DYg~~~~~~~~~-------~~~~~~~~C~CGs~~CRG~L~  499 (502)
                      .++++|||+|||++||||||||+.........       ......+.|+|||.+|||+|+
T Consensus       241 ~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~Crg~ln  300 (300)
T 2r3a_A          241 LPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN  300 (300)
T ss_dssp             SCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCCCTTCCSBCC
T ss_pred             ceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCCCccccccCc
Confidence            89999999999999999999999874321000       011135899999999999985
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A* Back     alignment and structure
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Back     alignment and structure
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Back     alignment and structure
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 502
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 2e-49
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 1e-48
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 3e-23
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 7e-14
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 0.002
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  168 bits (427), Expect = 2e-49
 Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 15/248 (6%)

Query: 240 PIYVINNVDL-SCVPANFTHTNHNIPAEGVIVNEEPI-IWCECVD----NCRDSSYCC-- 291
            + ++N VD   C   +F   +     +GVI  +      C C      +  + S C   
Sbjct: 28  EVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECL 87

Query: 292 -GQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDC 350
                 +  AYD   R+R   G  IYECN  C C+  CPNRV+Q G  + L I+KT  + 
Sbjct: 88  DDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT-KEK 146

Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
           GWGV++L   P GT++T Y+GE++T   A+ RD        D +G T       F+ ++ 
Sbjct: 147 GWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNY-----DDDGITYLFDLDMFDDASE 201

Query: 411 FVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYK 470
           + +DA N+G++S F NHSC PN+A+Y+A        ++ L  FAI+DIQ  E+L+F Y  
Sbjct: 202 YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 261

Query: 471 SVTKEPTR 478
           +    P +
Sbjct: 262 AKDFSPVQ 269
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.93
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.88
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.26
d1qk9a_92 Methyl-CpG-binding protein 2, MECP2 {Human (Homo s 96.92
d1ig4a_75 Methylation-dependent transcriptional repressor MB 95.49
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 83.96
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.5e-55  Score=434.32  Aligned_cols=238  Identities=36%  Similarity=0.659  Sum_probs=201.4

Q ss_pred             HHHHHHHHhhhhcCCCCCCeEEEeCCCCCCCC-CCCEEeeeccCCCCccCCCC-CccccccCCC--CCC--CCcc-cccc
Q psy7969         222 NLKRYEMEINVTTGNAVAPIYVINNVDLSCVP-ANFTHTNHNIPAEGVIVNEE-PIIWCECVDN--CRD--SSYC-CGQL  294 (502)
Q Consensus       222 ~l~~~e~~in~~~g~e~~pI~v~N~VD~~~pP-~~F~YI~~ni~~~gv~~~~~-~~~gC~C~~~--C~~--~~~C-C~~~  294 (502)
                      +.+.|++.|+.   .+.+||+++|+||++.+| .+|+||+++++.+++..... ...||+|...  |..  ...| |.+.
T Consensus        13 ~~~~~~~~~~~---~~~~pi~~~N~vD~~~~P~~~F~yi~~~~~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~   89 (269)
T d1mvha_          13 KRELFRKKLRE---IEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD   89 (269)
T ss_dssp             HHHHHHHHHHT---SSSSCEEEECSSCCCCCSCCCSEECSSCEECTTCCCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTT
T ss_pred             HHHHHHHHHhh---CCCCCcEEEeCCCCCCCCCCCcEEeeccccCCCCCcCCccccCCCCCCCCCCcCCCCCcceecccc
Confidence            33444555543   467899999999998644 58999999999999864432 2579999763  433  3345 5443


Q ss_pred             --CCCCccccCCCceeeCCCCceEecCCCCCCCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeE
Q psy7969         295 --NDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGE  372 (502)
Q Consensus       295 --~~~~~aY~~~grL~~~~~~~I~ECn~~C~C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GE  372 (502)
                        ....++|+..|+|....+.+||||++.|+|+.+|.||++|+|...+|+||+| +.+||||||+++|++|+||+||+||
T Consensus        90 ~~~~~~~~~~~~~rl~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t-~~~G~GvfA~~~I~kGt~I~eY~Ge  168 (269)
T d1mvha_          90 LDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT-KEKGWGVRSLRFAPAGTFITCYLGE  168 (269)
T ss_dssp             CCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCSCEEEEEC-SSSSEEEEESSCBCTTCEEEECCCE
T ss_pred             cCCCCccccccCCccccCcCCeEEECCCCCCCCCCCCCeecCCCCccCEEEEEc-CCCCeEEEeCcccCCCceEEEecce
Confidence              3456889999999989999999999999999999999999999999999999 7799999999999999999999999


Q ss_pred             eeeHHHHhhcc------CcceeEeccCCCCCcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCC
Q psy7969         373 ILTYEAASLRD------NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPN  446 (502)
Q Consensus       373 VIt~~Eae~r~------~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~  446 (502)
                      ||+..+++.|.      +.+|+|++.+....           ..++|||+.+||+||||||||+||+.++.+++++.+..
T Consensus       169 vi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~-----------~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~  237 (269)
T d1mvha_         169 VITSAEAAKRDKNYDDDGITYLFDLDMFDDA-----------SEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRT  237 (269)
T ss_dssp             EEEHHHHHHHHTTCCSCSCCCEEEECSSCSS-----------SCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTT
T ss_pred             EEcHHHHHHHHHhHhhcCCcchhheeccccc-----------ccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCc
Confidence            99999998875      46788888754332           27999999999999999999999999999999888889


Q ss_pred             eeEEEEEEcCCCCCCCeEEEecCCCCCC
Q psy7969         447 LHRLPLFAIRDIQKGEQLSFSYYKSVTK  474 (502)
Q Consensus       447 ~pria~FAlRdI~aGEELT~DYg~~~~~  474 (502)
                      .++|+|||+|||++|||||||||+....
T Consensus       238 ~~~i~~fA~rdI~~GEELt~DYG~~~d~  265 (269)
T d1mvha_         238 IYDLAFFAIKDIQPLEELTFDYAGAKDF  265 (269)
T ss_dssp             SCEEEEEESSCBCTTCBCEECCCTTSSS
T ss_pred             cceEEEEECCccCCCCEEEEecCCCcCC
Confidence            9999999999999999999999987543
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure