Psyllid ID: psy7971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MEGSSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLGSQAADKKSSGMWQIKMEIPLYMKL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEccccEEccccccccccEEEEEcccccEEEEEEccccccccccccccccEEccccccccccccccccccccccEEEEcEEEcccccccccHHHHHccccccccccccccccccccccccccccccccEEcccccccEEEEcccccccccccccccccEEEEEcccccccccccEEEEEcccccEEEEEccccEEcEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccEEEEEccccEccccccccccEEEEEEEcccccEEEEEEccccccEcccccEEEEEEccccccccccccEEccccccccccEEEEEcccccccccHHHEcccccccccEEEEEEcccccccEcccccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccccEEEEEEEcccEEEEEEcccccEEEEEEccccccEEccccHcHHHcccccccEEEEccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
megssgtranrfamegvgarvirgpdwkwgkqdggdghvgtvrnfespeEVVVVWDngtaanyrcagafdlrildsaptgvkhdgtmcdfckqqpiygirwkcaecsnydlcsicyHAEKHNLRhrfyrinfpgservlleprrkskkisvrgifpgarvvrgvdwqwedqdggngrrgkvnevqdwsaasprsaaYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMglgsqaadkkssgmwqikmeiplymkl
Flexible Loop (DISEMBL)
megssgtranrfamegvgarvirgpdwkwgkqdGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRInfpgservlleprrkskkisvrgifpgarvvrgvdwqwedqdggngrrgkvnevqdwsaasprsaaYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLgsqaadkkssgmwqikmeiplymkl
Low Complexity Region (SEG)
MEGSSGTRANRFAMEGVGARVIRgpdwkwgkqdggdgHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLGSQAADKKSSGMWQIKMEIPLYMKL
Disordered region (IsUnstruct)
************AMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQ**************DWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLG***********WQIKMEI******
Disordered Region (DISOPRED)
*****************GARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQ****************VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLGS**************MEIPLYMKL
Disordered Region (DISEMBL)
********ANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLG*********GMWQIKMEIPLYMKL
Disordered Region (DISPRO)
*********NRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLGSQAADKKSSGMWQIKMEIPLYMKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKALRHHTLSQLRLLRDVPDVGKLLMGLGSQAADKKSSGMWQIKMEIPLYMKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9VUX2	1226	E3 ubiquitin-protein liga	yes	N/A	0.775	0.174	0.869	1e-117
Q86YT6	1006	E3 ubiquitin-protein liga	yes	N/A	0.760	0.208	0.832	1e-115
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	N/A	0.757	0.206	0.832	1e-115
Q80SY4	1006	E3 ubiquitin-protein liga	yes	N/A	0.760	0.208	0.832	1e-115
Q804S5	1030	E3 ubiquitin-protein liga	yes	N/A	0.753	0.201	0.844	1e-114
Q5ZIJ9	954	E3 ubiquitin-protein liga	no	N/A	0.771	0.223	0.459	2e-54
Q68LP1	971	E3 ubiquitin-protein liga	no	N/A	0.753	0.214	0.460	7e-49
Q8R516	973	E3 ubiquitin-protein liga	no	N/A	0.753	0.213	0.456	1e-48
Q96AX9	1013	E3 ubiquitin-protein liga	no	N/A	0.753	0.205	0.465	2e-48
O95714	4834	E3 ubiquitin-protein liga	no	N/A	0.394	0.022	0.313	1e-11

>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster GN=mib1 PE=1 SV=3

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 187/215 (86%), Positives = 203/215 (94%)

Query: 11  RFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFD 70
           RF+MEGVGARVIRGPDWKW KQDGG+GHVGTVRNFES EEVVVVWDNGTAANYRCAGA+D
Sbjct: 102 RFSMEGVGARVIRGPDWKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGTAANYRCAGAYD 161

Query: 71  LRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
           LRILDSAPTGVKH+GTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+LRHRFYRI
Sbjct: 162 LRILDSAPTGVKHEGTMCDTCRQQPIFGIRWKCAECINYDLCSICYHGDKHHLRHRFYRI 221

Query: 131 NFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAA 190
             PG ER +LEPRRKSKK+  RGIFPGARVVRGVDWQWEDQDGG GRRGKVNE+QDWS+A
Sbjct: 222 TTPGGERTMLEPRRKSKKVLARGIFPGARVVRGVDWQWEDQDGGVGRRGKVNEIQDWSSA 281

Query: 191 SPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           SPRSAAY++WDNG+KNLYRVGFEGMADLKV+NDAK
Sbjct: 282 SPRSAAYVIWDNGSKNLYRVGFEGMADLKVVNDAK 316

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta (Dl) and Serrate (Ser) receptors, which act as ligands of Notch proteins. Positively regulates the Notch signaling by ubiquitinating the intracellular domain of Dl and Ser, leading to endocytosis of Dl and Ser receptors. Regulates a subset of Notch signaling events, including wing margin specification, leg segmentation and vein determination, that are distinct from those events requiring neuralize (neur) activity. Also modulates lateral inhibition, a neur- and Dl-dependent signaling event, suggesting a distinct but partially complementary function with neur.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 205/221 (92%)

Query: 5   SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
           S +R NR  +EGVGARV+RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2   SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query: 65  CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
           C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62  CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
           HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 205/221 (92%)

Query: 5   SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
           SG+R NR  +EGVGARV RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2   SGSRNNRVMVEGVGARVARGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query: 65  CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
           C+GA+DLRI+DSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62  CSGAYDLRIMDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
           HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 205/221 (92%)

Query: 5   SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
           S +R NR  +EGVGARV+RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2   SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query: 65  CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
           C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62  CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
           HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation (By similarity). Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 184/218 (84%), Positives = 201/218 (92%)

Query: 8   RANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAG 67
           R NR  MEGVGARVIRGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYRC+G
Sbjct: 5   RNNRVMMEGVGARVIRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSG 64

Query: 68  AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
           A+D+RILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC+ CYH +KH+LRHRF
Sbjct: 65  AYDVRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTTCYHGDKHHLRHRF 124

Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
           YRI  PGSERVLLE RRKSKKI+ RGIF G RVVRGVDWQWEDQDGGNGRRGKV E+QDW
Sbjct: 125 YRITTPGSERVLLESRRKSKKITARGIFAGGRVVRGVDWQWEDQDGGNGRRGKVTEIQDW 184

Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           SAASP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 185 SAASPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 9/222 (4%)

Query: 12  FAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNF------ESPEEVVVV-WDNGTAANYR 64
           +A   VG RV+RG DWKWG QD G+G+VGTV          +P++ VVV WD G   NYR
Sbjct: 6   YASMQVGMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTNYR 65

Query: 65  CA--GAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHN 122
               GA+DL + D+A  GV+H   +CD CK+  I G+RWKC  C +YDLC+ CY   KH+
Sbjct: 66  TGFQGAYDLLLYDNAQIGVRHPNIICDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNKHD 125

Query: 123 LRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVN 182
           L H F R     S+ VL+ PR+   +I+++G F GA+VVRG DW+W +QDGG G+ G+V 
Sbjct: 126 LSHAFERYETAHSQPVLVSPRQNLTRITLKGTFQGAKVVRGPDWEWGNQDGGEGKTGRVV 185

Query: 183 EVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
           +++ W   + RS A + W +G  N+YRVG +G  DLK   +A
Sbjct: 186 DIRGWDVETGRSVASVTWSDGTTNVYRVGHKGKVDLKCTVEA 227

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2 SV=2

 Score =  194 bits (492), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 9/217 (4%)

Query: 17  VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
           VG RV+RG DWKWG+QDGG+G       +G   +  +P+  VVV WD GT  NYR    G
Sbjct: 11  VGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 70

Query: 68  AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
           A DL + D+A  G++H   +CD CK+  + G+RWKC  C +YDLC+ CY   KH+L H F
Sbjct: 71  AHDLLLYDNAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAF 130

Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
            R     S  V L PR+   +I +RGIF GA+VVRG DW+W  QDGG G+ G+V +++ W
Sbjct: 131 ERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVVDIRGW 190

Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
              + RS A + W +G  N+YRVG +G  DLK + +A
Sbjct: 191 DVETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEA 227

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 9/217 (4%)

Query: 17  VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
           VG RV+RG DWKWG+QDGG+G       +G   +  +P+  VVV WD GT  NYR    G
Sbjct: 11  VGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 70

Query: 68  AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
           A DL + D+A  G++H   +CD CK+  + G+RWKC  C +YDLC+ CY   KH+L H F
Sbjct: 71  AHDLLLYDNAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAF 130

Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
            R     S  V L PR+   +I +RGIF GA+VVRG DW+W  QDGG G+ G+V +++ W
Sbjct: 131 ERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVVDIRGW 190

Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
              + RS A + W +G  N+YRVG +G  DL+ + +A
Sbjct: 191 DVETGRSVASVTWADGTTNVYRVGHKGKVDLRCVGEA 227

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 9/217 (4%)

Query: 17  VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
           VG RV+RG DWKWG+QDGG+G       +G   +  +P+  VVV WD GT  NYR    G
Sbjct: 69  VGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 128

Query: 68  AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
           A DL + D+A  GV+H   +CD CK+  + G+RWKC  C +YDLC+ CY   KH L H F
Sbjct: 129 AHDLLLYDNAQIGVRHPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKHELAHAF 188

Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
            R     S  V L PR+   +I +RGIF GA+VVRG DW+W  QDGG G+ G+V +++ W
Sbjct: 189 DRYETAHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKPGRVVDIRGW 248

Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
              + RS A + W +G  N+YRVG +G  DLK + +A
Sbjct: 249 DVETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEA 285

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 22   IRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGV 81
            +  P +KWG        VG V+ F +  + ++V  +    ++      ++ ++ S     
Sbjct: 2651 VTTPKYKWGSVT--HQSVGVVKAFSANGKDIIV--DFPQQSHWTGLLSEMELVPSI---- 2702

Query: 82   KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVL 139
             H G  CD C+  PI G R+KC  C ++D C  C+  +KHN RH F RIN PG   V 
Sbjct: 2703 -HPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNTRHTFGRINEPGQSAVF 2759

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
380010909	637	PREDICTED: E3 ubiquitin-protein ligase m	0.804	0.348	0.900	1e-121
328782092	628	PREDICTED: e3 ubiquitin-protein ligase m	0.804	0.353	0.900	1e-121
350402592	639	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.804	0.347	0.900	1e-121
383849396	614	PREDICTED: E3 ubiquitin-protein ligase m	0.804	0.361	0.900	1e-121
307188210	660	E3 ubiquitin-protein ligase mind-bomb [C	0.804	0.336	0.896	1e-121
340711957	639	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.804	0.347	0.900	1e-121
345480050	1058	PREDICTED: E3 ubiquitin-protein ligase m	0.807	0.210	0.888	1e-120
322779200	563	hypothetical protein SINV_11916 [Solenop	0.804	0.394	0.896	1e-120
332025765	657	E3 ubiquitin-protein ligase mind-bomb [A	0.804	0.337	0.891	1e-120
307193671	417	E3 ubiquitin-protein ligase mind-bomb [H	0.807	0.534	0.896	1e-119

>gi|380010909|ref|XP_003689558.1| PREDICTED: E3 ubiquitin-protein ligase mind-bomb-like [Apis florea]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782092|ref|XP_394129.3| PREDICTED: e3 ubiquitin-protein ligase mind-bomb [Apis mellifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402592|ref|XP_003486536.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase mind-bomb-like [Bombus impatiens]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849396|ref|XP_003700331.1| PREDICTED: E3 ubiquitin-protein ligase mind-bomb-like [Megachile rotundata]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTMRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188210|gb|EFN73042.1| E3 ubiquitin-protein ligase mind-bomb [Camponotus floridanus]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 199/222 (89%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRF+RI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFFRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711957|ref|XP_003394532.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase mind-bomb-like [Bombus terrestris]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/222 (90%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480050|ref|XP_003424076.1| PREDICTED: E3 ubiquitin-protein ligase mib1-like [Nasonia vitripennis]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/224 (88%), Positives = 214/224 (95%), Gaps = 1/224 (0%)

Query: 3   GSSGTR-ANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAA 61
            S+GTR   RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAA
Sbjct: 5   ASTGTRGTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAA 64

Query: 62  NYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKH 121
           NYRC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC+NYDLCSICYH +KH
Sbjct: 65  NYRCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECNNYDLCSICYHGDKH 124

Query: 122 NLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKV 181
           +LRHRFYRI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKV
Sbjct: 125 HLRHRFYRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKV 184

Query: 182 NEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           NE+QDWSAASPRSAAY++WDN AKNLYRVGFEGMADLKV+NDAK
Sbjct: 185 NEIQDWSAASPRSAAYVIWDNSAKNLYRVGFEGMADLKVVNDAK 228

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779200|gb|EFZ09536.1| hypothetical protein SINV_11916 [Solenopsis invicta]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/222 (89%), Positives = 214/222 (96%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRF+RI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFFRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAK 227

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025765|gb|EGI65922.1| E3 ubiquitin-protein ligase mind-bomb [Acromyrmex echinatior]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/222 (89%), Positives = 213/222 (95%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRF+RI  PGSERVLLEPRRKSKKI +RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFFRIATPGSERVLLEPRRKSKKIGIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
           +QDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV++DAK
Sbjct: 186 IQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVSDAK 227

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193671|gb|EFN76354.1| E3 ubiquitin-protein ligase mind-bomb [Harpegnathos saltator]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/223 (89%), Positives = 214/223 (95%)

Query: 4   SSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANY 63
           S+GTR  RF MEGVGARVIRGP+WKWGKQDGG+GHVGTVRNFESPEEVVVVWDNGTAANY
Sbjct: 6   STGTRTTRFMMEGVGARVIRGPEWKWGKQDGGEGHVGTVRNFESPEEVVVVWDNGTAANY 65

Query: 64  RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
           RC+GAFDLRILDSAPTGVKHDGTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct: 66  RCSGAFDLRILDSAPTGVKHDGTMCDTCRQQPIFGIRWKCAECGNYDLCSICYHGDKHHL 125

Query: 124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
           RHRF+RI  PGSERVLLEPRRKSKKI++RGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE
Sbjct: 126 RHRFFRIATPGSERVLLEPRRKSKKIAIRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 185

Query: 184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAKA 226
           VQDWSAASPRSAAY++WDNGAKNLYRVGFEGMADLKV+NDAK 
Sbjct: 186 VQDWSAASPRSAAYVIWDNGAKNLYRVGFEGMADLKVVNDAKG 228

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
FB|FBgn0263601	1226	mib1 "mind bomb 1" [Drosophila	0.804	0.181	0.792	1.3e-107
UNIPROTKB|E1C2G3	1006	MIB1 "Uncharacterized protein"	0.800	0.219	0.773	6.5e-106
UNIPROTKB|E1BJ09	1006	MIB1 "Uncharacterized protein"	0.800	0.219	0.773	6.5e-106
UNIPROTKB|Q86YT6	1006	MIB1 "E3 ubiquitin-protein lig	0.800	0.219	0.773	6.5e-106
UNIPROTKB|I3LLV6	1006	MIB1 "Uncharacterized protein"	0.800	0.219	0.773	6.5e-106
MGI|MGI:2443157	1006	Mib1 "mindbomb homolog 1 (Dros	0.800	0.219	0.773	6.5e-106
RGD|1307195	1006	Mib1 "mindbomb E3 ubiquitin pr	0.800	0.219	0.773	6.5e-106
ZFIN|ZDB-GENE-030404-2	1041	mib "mind bomb" [Danio rerio (	0.789	0.209	0.784	1.2e-104
UNIPROTKB|E2RJP5	1008	MIB1 "Uncharacterized protein"	0.800	0.219	0.699	1.3e-94
UNIPROTKB|J9NX92	923	MIB1 "Uncharacterized protein"	0.503	0.150	0.820	8.5e-75

FB|FBgn0263601 mib1 "mind bomb 1" [Drosophila melanogaster (taxid:7227)]

 Score = 978 (349.3 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
 Identities = 176/222 (79%), Positives = 192/222 (86%)

Query:     4 SSGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANY 63
             S+     RF+MEGVGARVIR              HVGTVRNFES EEVVVVWDNGTAANY
Sbjct:    95 SAAALVRRFSMEGVGARVIRGPDWKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGTAANY 154

Query:    64 RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNL 123
             RCAGA+DLRILDSAPTGVKH+GTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+L
Sbjct:   155 RCAGAYDLRILDSAPTGVKHEGTMCDTCRQQPIFGIRWKCAECINYDLCSICYHGDKHHL 214

Query:   124 RHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNE 183
             RHRFYRI  PG ER +LEPRRKSKK+  RGIFPGARVVRGVDWQWEDQDGG GRRGKVNE
Sbjct:   215 RHRFYRITTPGGERTMLEPRRKSKKVLARGIFPGARVVRGVDWQWEDQDGGVGRRGKVNE 274

Query:   184 VQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             +QDWS+ASPRSAAY++WDNG+KNLYRVGFEGMADLKV+NDAK
Sbjct:   275 IQDWSSASPRSAAYVIWDNGSKNLYRVGFEGMADLKVVNDAK 316

GO:0016567 "protein ubiquitination" evidence=IEA;NAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048749 "compound eye development" evidence=NAS

GO:0045807 "positive regulation of endocytosis" evidence=NAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=NAS

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0045179 "apical cortex" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|E1C2G3 MIB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SSSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045807 "positive regulation of endocytosis" evidence=IEA

UNIPROTKB|E1BJ09 MIB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q86YT6 MIB1 "E3 ubiquitin-protein ligase MIB1" [Homo sapiens (taxid:9606)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|I3LLV6 MIB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:2443157 Mib1 "mindbomb homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0001568 "blood vessel development" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001756 "somitogenesis" evidence=IMP

GO:0001841 "neural tube formation" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0045665 "negative regulation of neuron differentiation" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307195 Mib1 "mindbomb E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 956 (341.6 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query:     5 SGTRANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYR 64
             S +R NR  +EGVGARV+R              HVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct:     2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61

Query:    65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
             C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct:    62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121

Query:   125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
             HRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct:   122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181

Query:   185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0001568 "blood vessel development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001841 "neural tube formation" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045807 "positive regulation of endocytosis" evidence=ISO

ZFIN|ZDB-GENE-030404-2 mib "mind bomb" [Danio rerio (taxid:7955)]

 Score = 948 (338.8 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
 Identities = 171/218 (78%), Positives = 187/218 (85%)

Query:     8 RANRFAMEGVGARVIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAANYRCAG 67
             R NR  MEGVGARVIR              HVGTVR+FESPEEVVVVWDNGTAANYRC+G
Sbjct:     5 RNNRVMMEGVGARVIRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSG 64

Query:    68 AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
             A+D+RILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC+ CYH +KH+LRHRF
Sbjct:    65 AYDVRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTTCYHGDKHHLRHRF 124

Query:   128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
             YRI  PGSERVLLE RRKSKKI+ RGIF G RVVRGVDWQWEDQDGGNGRRGKV E+QDW
Sbjct:   125 YRITTPGSERVLLESRRKSKKITARGIFAGGRVVRGVDWQWEDQDGGNGRRGKVTEIQDW 184

Query:   188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             SAASP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   185 SAASPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0001756 "somitogenesis" evidence=IMP

GO:0021986 "habenula development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0048699 "generation of neurons" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0001885 "endothelial cell development" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0060113 "inner ear receptor cell differentiation" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0045685 "regulation of glial cell differentiation" evidence=IMP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IMP

GO:0071599 "otic vesicle development" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0061195 "taste bud formation" evidence=IMP

GO:0021508 "floor plate formation" evidence=IMP

GO:0021521 "ventral spinal cord interneuron specification" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051865 "protein autoubiquitination" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0021536 "diencephalon development" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0021520 "spinal cord motor neuron cell fate specification" evidence=IMP

GO:0021519 "spinal cord association neuron specification" evidence=IMP

GO:0021514 "ventral spinal cord interneuron differentiation" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0021654 "rhombomere boundary formation" evidence=IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

UNIPROTKB|E2RJP5 MIB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 849 (303.9 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 156/223 (69%), Positives = 177/223 (79%)

Query:     5 SGTRANRFAMEGVGAR--VIRXXXXXXXXXXXXXXHVGTVRNFESPEEVVVVWDNGTAAN 62
             S +R NR   EGVGAR  +                HVG V + E+P+EVVVVW  GTAAN
Sbjct:     2 SNSRNNRVKKEGVGARARLFPDPGCNWGKQDGGEGHVGPVGSLENPQEVVVVWYKGTAAN 61

Query:    63 YRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHN 122
              RC+GA+ L IL  AP G+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+
Sbjct:    62 SRCSGAYILSILSFAPVGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHH 121

Query:   123 LRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVN 182
             LRHRFYRI  PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV 
Sbjct:   122 LRHRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVT 181

Query:   183 EVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
             E+QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct:   182 EIQDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 224

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NX92 MIB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 661 (237.7 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 114/139 (82%), Positives = 127/139 (91%)

Query:    87 MCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKS 146
             MCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LRHRFYRI  PGSERVLLE RRKS
Sbjct:     1 MCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGSERVLLESRRKS 60

Query:   147 KKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKN 206
             KKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+QDWSA+SP SAAY++WDNGAKN
Sbjct:    61 KKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWSASSPHSAAYVLWDNGAKN 120

Query:   207 LYRVGFEGMADLKVLNDAK 225
             LYRVGFEGM+DLK + DAK
Sbjct:   121 LYRVGFEGMSDLKCVQDAK 139

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80SY4	MIB1_MOUSE	6, ., 3, ., 2, ., -	0.8325	0.7608	0.2087	yes	N/A
Q804S5	MIB1_DANRE	6, ., 3, ., 2, ., -	0.8440	0.7536	0.2019	yes	N/A
Q86YT6	MIB1_HUMAN	6, ., 3, ., 2, ., -	0.8325	0.7608	0.2087	yes	N/A
Q9VUX2	MIB_DROME	6, ., 3, ., 2, ., -	0.8697	0.7753	0.1745	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
pfam06701	63	pfam06701, MIB_HERC2, Mib_herc2	1e-24
cd02339	45	cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type	2e-24
pfam06701	63	pfam06701, MIB_HERC2, Mib_herc2	4e-24
cd02249	46	cd02249, ZZ, Zinc finger, ZZ type	5e-13
cd02344	45	cd02344, ZZ_HERC2, Zinc finger, ZZ type	5e-12
cd02340	43	cd02340, ZZ_NBR1_like, Zinc finger, ZZ type	1e-11
cd02338	49	cd02338, ZZ_PCMF_like, Zinc finger, ZZ type	2e-10
cd02334	49	cd02334, ZZ_dystrophin, Zinc finger, ZZ type	2e-10
pfam00569	46	pfam00569, ZZ, Zinc finger, ZZ type	1e-09
smart00291	44	smart00291, ZnF_ZZ, Zinc-binding domain, present i	6e-09
cd02341	48	cd02341, ZZ_ZZZ3, Zinc finger, ZZ type	4e-08
cd02345	49	cd02345, ZZ_dah, Zinc finger, ZZ type	3e-07
cd02335	49	cd02335, ZZ_ADA2, Zinc finger, ZZ type	3e-06
cd02342	43	cd02342, ZZ_UBA_plant, Zinc finger, ZZ type	5e-05
cd02337	41	cd02337, ZZ_CBP, Zinc finger, ZZ type	2e-04
COG5114	432	COG5114, COG5114, Histone acetyltransferase comple	0.004

>gnl|CDD|115363 pfam06701, MIB_HERC2, Mib_herc2

 Score = 93.2 bits (232), Expect = 1e-24
 Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 157 GARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMA 216
           GARVVRGVDW+W DQDGG G  G V E+      SP     + WD G+ N YR+G EG  
Sbjct: 1   GARVVRGVDWKWGDQDGGEGGEGTVTEI-----ESPDGWVVVQWDTGSTNSYRMGAEGKY 55

Query: 217 DLKVLNDA 224
           DLK+ ++A
Sbjct: 56  DLKLADNA 63

Named "mib/herc2 domain" in. Usually the protein also contains an E3 ligase domain (either Ring or Hect). Length = 63

>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type

 Score = 92.1 bits (229), Expect = 2e-24
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 86  TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
            +CD C++Q I GIRWKCAEC NYDLC+ CYH +KH+L HRFYR 
Sbjct: 1   IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY 45

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. Length = 45

>gnl|CDD|115363 pfam06701, MIB_HERC2, Mib_herc2

 Score = 91.7 bits (228), Expect = 4e-24
 Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 18 GARVIRGPDWKWGKQDGGDGHVGTVRNFESPEE-VVVVWDNGTAANYRCA--GAFDLRIL 74
          GARV+RG DWKWG QDGG+G  GTV   ESP+  VVV WD G+  +YR    G +DL++ 
Sbjct: 1  GARVVRGVDWKWGDQDGGEGGEGTVTEIESPDGWVVVQWDTGSTNSYRMGAEGKYDLKLA 60

Query: 75 DSA 77
          D+A
Sbjct: 61 DNA 63

Named "mib/herc2 domain" in. Usually the protein also contains an E3 ligase domain (either Ring or Hect). Length = 63

>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type

 Score = 61.7 bits (150), Expect = 5e-13
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHA--EKHNLRHRFYRI 130
           CD C  +PI G+R+ C  C ++DLCS CY    + H   H F  I
Sbjct: 3   CDGC-LKPIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI 46

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. Length = 46

>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
           CD C+  PI G R+KC  C ++D C  C+   KHN RH F RI
Sbjct: 3   CDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI 45

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 45

>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
           CD C Q PI G+R+KC  C +YDLC  C     H   H   +I
Sbjct: 3   CDGC-QGPIVGVRYKCLVCPDYDLCESCEAKGVHPE-HAMLKI 43

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. Length = 43

>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFY 128
           CD C +    G R+KC  C +YDLC+ CY +     RH F 
Sbjct: 3   CDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFD 43

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination. Length = 49

>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 86  TMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
             C+ CK+ PI G R++C +C NYDLC  C+     ++ H   H
Sbjct: 1   AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSH 44

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. Length = 49

>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 82  KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY 116
            H    C+ CK+ PI G R+ C  C +YDLC  C+
Sbjct: 1   IHHVYTCNICKECPIIGFRYHCLRCFDYDLCQSCF 35

Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure. Length = 46

>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein

 Score = 50.5 bits (121), Expect = 6e-09
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHR 126
           CD C  +PI G+R+ C  C +YDLC  C+        H 
Sbjct: 7   CDTC-GKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHS 44

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy. Length = 44

>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 88  CDFCKQQPIYGIRWKCAECSN--YDLCSICYHA-EKHNLRHRFYRI 130
           CD C  +PI G R+ C+EC +  +DLC  C    E H   H   +I
Sbjct: 3   CDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI 48

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 48

>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHA----EKHNLRHRFYRI 130
           C  C++Q I GIR+ C  C +Y LC  CY      ++HN  H  Y +
Sbjct: 3   CSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYEL 49

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila. . Length = 49

>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHR 126
           CD+C +     IR KCAEC ++DLC  C+ A     +HR
Sbjct: 3   CDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHR 41

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 49

>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYH 117
           CD C   PI G R+K     +YDLC+IC+ 
Sbjct: 3   CDGCGVLPITGPRYKSKVKEDYDLCTICFS 32

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. Length = 43

>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 86  TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKH 121
             C+ CK       RW C  C +YDLC  CY+ + H
Sbjct: 1   YTCNECKHHV--ETRWHCTVCEDYDLCITCYNTKNH 34

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear. Length = 41

>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 13/41 (31%), Positives = 14/41 (34%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFY 128
           CD C          KC EC   DLC  C+        H  Y
Sbjct: 8   CDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPY 48

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG4582|consensus	278		99.97
PF06701	68	MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a	99.96
PF06701	68	MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a	99.83
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	99.71
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	99.65
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	99.56
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	99.54
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	99.54
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	99.49
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	99.47
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	99.46
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	99.38
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	99.34
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	99.31
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	99.3
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	99.27
KOG1280|consensus	381		99.14
KOG4286|consensus	966		99.07
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	99.01
KOG4301|consensus	434		98.33
KOG0457|consensus	438		98.3
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	97.86
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.83
KOG4582|consensus	278		96.09
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	93.76
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	89.1
KOG1778|consensus	319		88.1

>KOG4582|consensus

Probab=99.97  E-value=9.5e-31  Score=242.65  Aligned_cols=198  Identities=35%  Similarity=0.602  Sum_probs=175.7

Q ss_pred             chhhccccceEEeCCCCccCCc---CCCCCceeEEEeeCC--------CC-ceEEEEcCCCCcceee----cCceeeeee
Q psy7971          11 RFAMEGVGARVIRGPDWKWGKQ---DGGDGHVGTVRNFES--------PE-EVVVVWDNGTAANYRC----AGAFDLRIL   74 (276)
Q Consensus        11 ~~~~~~vG~RVvRGpdWkWg~q---Dgg~g~vGtVv~~ss--------~e-evvV~WD~G~~~~YR~----~g~~DL~lv   74 (276)
                      ++-...++.||++|.+|.|-.+   +...++++++..|..        .. .+.+.|+.....+++.    .+..++.+.
T Consensus        57 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~k~~~~~~~~~~~~~~  136 (278)
T KOG4582|consen   57 YSDEDGVGMRVVRGNDLFDVTNQRLADEIGHVNAVRSFNSAAPSSGSSTPATVPVPWDKIPRSIIKVLEKYQKLASLVIT  136 (278)
T ss_pred             hhhccccceeEEecCCceEeecccCccccccccceeeeccccccccccCccccccccchhhhhhhhhhHHHhhhhhhhhh
Confidence            3445578999999999999999   555777788887732        22 3566799888888775    345677778


Q ss_pred             cCCCCCCCCCC-----CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEE---EeeCCCceeeecccccc
Q psy7971          75 DSAPTGVKHDG-----TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYR---INFPGSERVLLEPRRKS  146 (276)
Q Consensus        75 D~ap~~v~H~~-----v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~r---i~~P~~~~V~lepRr~~  146 (276)
                      ++++.+..|++     +.||.|...+|+|.||||++|+|||||+.||....||.+|.|.|   ..+|....+.+..++.+
T Consensus       137 ~~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~~t~~~~~~~~~~p~~~  216 (278)
T KOG4582|consen  137 LNPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTNETPFSGYVMLSSPPNP  216 (278)
T ss_pred             cCCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCCCCCcccceeecccccCCCCcceeccCCCCc
Confidence            99999999999     99999998899999999999999999999999887889999999   88999999999999999


Q ss_pred             CcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceee
Q psy7971         147 KKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLY  208 (276)
Q Consensus       147 ~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~Y  208 (276)
                      ......++++|..+.||++|+|++|+++++..|+|.++..|.+..+++.+.+-|+.|..+.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (278)
T KOG4582|consen  217 VNLNKRPIFVGHSKVRGNDWYWTSLGGGEGRIGRVNEIVLWINGPRRSSAVVYWVMGSENDY  278 (278)
T ss_pred             ccccccccccccccccccCCccccccCCCCCCccccccccccccccccceeeecCCCccCCC
Confidence            99899999999999999999999999999999999999999999999999999999988876

>PF06701 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a RING ubiquitin ligase in the Notch pathway

Probab=99.96  E-value=6.1e-31  Score=196.67  Aligned_cols=68  Identities=57%  Similarity=1.119  Sum_probs=48.4

Q ss_pred             CceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEeeCC
Q psy7971         157 GARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA  224 (276)
Q Consensus       157 g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~~~~  224 (276)
                      |+||+|||||+|+|||||+|++|||++|++|++.+++++|.|+||+|.+|+||+|++|+|||+++++|
T Consensus         1 G~rVvRGpDW~WgdQDGG~g~~GtV~~i~~~~~~~~~~~v~V~Wd~G~~~~YR~G~~G~~DL~~~~~a   68 (68)
T PF06701_consen    1 GARVVRGPDWKWGDQDGGEGHVGTVVSIRDWSSESPDGWVVVQWDNGTRNNYRVGYEGKYDLKVVDNA   68 (68)
T ss_dssp             TSEEEE-TT--STTTTSSTT--EEE-S--------BTTEEEEEETTTEEEEEEBSCCC-B-EEE-T--
T ss_pred             CCeeeeCcCCCccCcCCCCCcceEEEecccccccCCCCeEEEEeCCCCceeccccCCCCEEEEEecCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999986

Mib interacts with the intracellular domain of Delta to promote its ubiquitylation and internalisation. Cell transplantation studies suggest that mib function is essential in the signalling cell for efficient activation of Notch in neighbouring cells. This domain has been named 'mib/herc2 domain' in []and usually the protein also contains an E3 ligase domain (either Ring or Hect).; GO: 0004842 ubiquitin-protein ligase activity, 0046872 metal ion binding, 0016567 protein ubiquitination; PDB: 2DK3_A 3DKM_A.

>PF06701 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a RING ubiquitin ligase in the Notch pathway

Probab=99.83  E-value=2.5e-21  Score=144.85  Aligned_cols=60  Identities=63%  Similarity=1.224  Sum_probs=44.2

Q ss_pred             cceEEeCCCCccCCcCCCCCceeEEEee------CCCCceEEEEcCCCCcceee--cCceeeeeecCC
Q psy7971          18 GARVIRGPDWKWGKQDGGDGHVGTVRNF------ESPEEVVVVWDNGTAANYRC--AGAFDLRILDSA   77 (276)
Q Consensus        18 G~RVvRGpdWkWg~qDgg~g~vGtVv~~------ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD~a   77 (276)
                      |+||||||||||++||||++++|||+++      +.++++.|+||++..++||+  +++|||+++++|
T Consensus         1 G~rVvRGpDW~WgdQDGG~g~~GtV~~i~~~~~~~~~~~v~V~Wd~G~~~~YR~G~~G~~DL~~~~~a   68 (68)
T PF06701_consen    1 GARVVRGPDWKWGDQDGGEGHVGTVVSIRDWSSESPDGWVVVQWDNGTRNNYRVGYEGKYDLKVVDNA   68 (68)
T ss_dssp             TSEEEE-TT--STTTTSSTT--EEE-S--------BTTEEEEEETTTEEEEEEBSCCC-B-EEE-T--
T ss_pred             CCeeeeCcCCCccCcCCCCCcceEEEecccccccCCCCeEEEEeCCCCceeccccCCCCEEEEEecCC
Confidence            7899999999999999999999999995      45678999999999999998  599999999875

Mib interacts with the intracellular domain of Delta to promote its ubiquitylation and internalisation. Cell transplantation studies suggest that mib function is essential in the signalling cell for efficient activation of Notch in neighbouring cells. This domain has been named 'mib/herc2 domain' in []and usually the protein also contains an E3 ligase domain (either Ring or Hect).; GO: 0004842 ubiquitin-protein ligase activity, 0046872 metal ion binding, 0016567 protein ubiquitination; PDB: 2DK3_A 3DKM_A.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=99.71  E-value=4.6e-18  Score=117.67  Aligned_cols=45  Identities=47%  Similarity=1.068  Sum_probs=43.5

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri  130 (276)
                      |.||+|++.||.|.||||++|+|||||+.||.++.|+..|+|.||
T Consensus         1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~~H~F~ri   45 (45)
T cd02344           1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI   45 (45)
T ss_pred             CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCCCCceeeC
Confidence            689999999999999999999999999999999999999999986

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=99.65  E-value=6.7e-17  Score=111.92  Aligned_cols=45  Identities=67%  Similarity=1.513  Sum_probs=43.1

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri  130 (276)
                      +.||+|++.||.|.||||++|+|||||+.||..+.|++.|+|+|+
T Consensus         1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H~~~H~f~r~   45 (45)
T cd02339           1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY   45 (45)
T ss_pred             CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCCCCCCCEEeC
Confidence            589999999999999999999999999999999999999999875

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=99.56  E-value=1.4e-15  Score=104.26  Aligned_cols=43  Identities=42%  Similarity=1.003  Sum_probs=40.4

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri  130 (276)
                      |.||+|++ +|.|.||||++|+|||||+.||..+.| +.|+|+++
T Consensus         1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~~H-~~H~f~~~   43 (43)
T cd02340           1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKGVH-PEHAMLKI   43 (43)
T ss_pred             CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcCCC-CCCCEEeC
Confidence            68999996 999999999999999999999999988 99999875

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=99.54  E-value=2.4e-15  Score=105.95  Aligned_cols=44  Identities=39%  Similarity=1.002  Sum_probs=40.4

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYR  129 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~r  129 (276)
                      |.||+|++.||.|+||||+.|+|||||+.||..+    .|...|||.+
T Consensus         1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~e   48 (49)
T cd02334           1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKE   48 (49)
T ss_pred             CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCeec
Confidence            5899999999999999999999999999999864    6889999865

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=99.54  E-value=2.8e-15  Score=105.13  Aligned_cols=45  Identities=38%  Similarity=0.880  Sum_probs=42.3

Q ss_pred             CcCCCCCCCceeeeeeeeccCC--CCeeecccccCc-ccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECS--NYDLCSICYHAE-KHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~--dfDLC~~C~~~~-~H~~~H~f~ri  130 (276)
                      +.||+|++.||.|+||+|++|+  |||||+.||.++ .|+..|+|.+|
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~~H~~~H~~~~i   48 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI   48 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcCCCCCCCceeeC
Confidence            4799999999999999999999  999999999988 89999999875

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.49  E-value=8.2e-15  Score=101.65  Aligned_cols=46  Identities=39%  Similarity=1.021  Sum_probs=36.5

Q ss_pred             CCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCcee
Q psy7971          82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF  127 (276)
Q Consensus        82 ~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f  127 (276)
                      .|.++.||+|+..||.|.||+|++|+|||||+.||..+.++..|++
T Consensus         1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~~   46 (46)
T PF00569_consen    1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHKM   46 (46)
T ss_dssp             -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSSE
T ss_pred             CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcCc
Confidence            4889999999988999999999999999999999999887778864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=99.47  E-value=2.6e-14  Score=100.56  Aligned_cols=44  Identities=36%  Similarity=0.840  Sum_probs=40.6

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYR  129 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~r  129 (276)
                      |.||+|++.||.|.||||+.|+|||||+.||..+    .|.++|+|..
T Consensus         1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~   48 (49)
T cd02338           1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC   48 (49)
T ss_pred             CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence            5899999999999999999999999999999976    7888999864

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=99.46  E-value=2e-14  Score=101.11  Aligned_cols=45  Identities=40%  Similarity=0.943  Sum_probs=40.7

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~ri  130 (276)
                      +.||+|.+.||.|+||+|++|+|||||..||..+    .|++.|+|..+
T Consensus         1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~~   49 (49)
T cd02345           1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYEL   49 (49)
T ss_pred             CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCcccC
Confidence            4799999889999999999999999999999964    69999999653

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=99.38  E-value=1.2e-13  Score=94.33  Aligned_cols=33  Identities=42%  Similarity=0.899  Sum_probs=31.6

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccC
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA  118 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~  118 (276)
                      |.||+|.+.||.|.||||+.|+|||||+.||..
T Consensus         1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~   33 (43)
T cd02342           1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR   33 (43)
T ss_pred             CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence            689999999999999999999999999999975

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd02249 ZZ Zinc finger, ZZ type

Probab=99.34  E-value=4.4e-13  Score=92.84  Aligned_cols=44  Identities=43%  Similarity=0.985  Sum_probs=40.3

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCc--ccCCCceeEEE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE--KHNLRHRFYRI  130 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~--~H~~~H~f~ri  130 (276)
                      +.||+|.+ +|.|.||+|+.|+|||||..||..+  .|.+.|+|.++
T Consensus         1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~~~H~~~H~~~~~   46 (46)
T cd02249           1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI   46 (46)
T ss_pred             CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCcCCCCCCCCEeEC
Confidence            47999996 9999999999999999999999987  88889999764

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=99.31  E-value=9.1e-13  Score=92.56  Aligned_cols=43  Identities=42%  Similarity=0.927  Sum_probs=39.6

Q ss_pred             cCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEE
Q psy7971          87 MCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYR  129 (276)
Q Consensus        87 ~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~r  129 (276)
                      .||+|.+.++.|.||+|++|+|||||..||..+    .|.+.|+|..
T Consensus         2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~   48 (49)
T cd02335           2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRV   48 (49)
T ss_pred             CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEe
Confidence            699999999999999999999999999999975    7999999864

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=99.30  E-value=6.7e-13  Score=93.01  Aligned_cols=42  Identities=31%  Similarity=0.757  Sum_probs=36.7

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccC----cccCCCceeE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA----EKHNLRHRFY  128 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~----~~H~~~H~f~  128 (276)
                      |.||+|.. .+.|+||||+.|+|||||+.||..    +.|..+|+|.
T Consensus         1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~   46 (48)
T cd02343           1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMV   46 (48)
T ss_pred             CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCcc
Confidence            57999996 688999999999999999999996    4677888874

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=99.27  E-value=2.2e-12  Score=88.65  Aligned_cols=43  Identities=37%  Similarity=0.965  Sum_probs=38.8

Q ss_pred             CCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCce
Q psy7971          83 HDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHR  126 (276)
Q Consensus        83 H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~  126 (276)
                      |..+.|+.|++ +|.|.||+|+.|+|||||..||..+.|...|.
T Consensus         2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~~~~~~h~   44 (44)
T smart00291        2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHE   44 (44)
T ss_pred             CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCcCcCCCCC
Confidence            55799999997 99999999999999999999999888776663

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>KOG1280|consensus

Probab=99.14  E-value=2.4e-11  Score=114.94  Aligned_cols=59  Identities=32%  Similarity=0.619  Sum_probs=53.6

Q ss_pred             CCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEEEeeCCCceee
Q psy7971          81 VKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYRINFPGSERVL  139 (276)
Q Consensus        81 v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~ri~~P~~~~V~  139 (276)
                      ..|.+|.||+|.+..+.|.||||+.|.|||||..||.++    .|..+||+..|..+.+...+
T Consensus         4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~   66 (381)
T KOG1280|consen    4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELY   66 (381)
T ss_pred             CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeE
Confidence            469999999999999999999999999999999999964    69999999999999876544

>KOG4286|consensus

Probab=99.07  E-value=2.3e-11  Score=123.83  Aligned_cols=83  Identities=28%  Similarity=0.563  Sum_probs=67.8

Q ss_pred             CCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccC----cccCCCceeEEEeeCCCceeeeccc-----------c
Q psy7971          80 GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA----EKHNLRHRFYRINFPGSERVLLEPR-----------R  144 (276)
Q Consensus        80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~----~~H~~~H~f~ri~~P~~~~V~lepR-----------r  144 (276)
                      ..+|. .+|++|+++||+|+||+|+.|+|||||..||..    +.|.+.|||.++.+|...+..+...           +
T Consensus       599 ~~kH~-~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~tts~~d~rdfak~L~nkfr~~~  677 (966)
T KOG4286|consen  599 TAKHQ-AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKR  677 (966)
T ss_pred             HHHhh-hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCCCChhhHHHHHHHHHhhhccch
Confidence            46776 899999999999999999999999999999985    5799999999999998876644322           1


Q ss_pred             ccCcceeeeeecCceEeec
Q psy7971         145 KSKKISVRGIFPGARVVRG  163 (276)
Q Consensus       145 ~~~~~~~~g~~~g~~v~rG  163 (276)
                      ...+.+.+|+.|-+.|..|
T Consensus       678 ~~a~~~rrGylpvq~~~e~  696 (966)
T KOG4286|consen  678 YFAKHPRRGYLPVQTVLEG  696 (966)
T ss_pred             hhhcccccCCccchhcccc
Confidence            2235556888888887766

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=99.01  E-value=8.3e-11  Score=79.96  Aligned_cols=39  Identities=38%  Similarity=1.054  Sum_probs=33.2

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeE
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFY  128 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~  128 (276)
                      ..||+|..  +.|.||+|+.|+|||||..||.+..|  .|.+.
T Consensus         1 y~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~~H--~H~~~   39 (41)
T cd02337           1 YTCNECKH--HVETRWHCTVCEDYDLCITCYNTKNH--PHKME   39 (41)
T ss_pred             CcCCCCCC--cCCCceECCCCcchhhHHHHhCCCCC--Ccccc
Confidence            36999985  66899999999999999999998776  56654

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>KOG4301|consensus

Probab=98.33  E-value=6.9e-08  Score=91.84  Aligned_cols=55  Identities=29%  Similarity=0.788  Sum_probs=50.4

Q ss_pred             CCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccC----cccCCCceeEEEeeCCC
Q psy7971          80 GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA----EKHNLRHRFYRINFPGS  135 (276)
Q Consensus        80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~----~~H~~~H~f~ri~~P~~  135 (276)
                      ++.|| +.|+.|...+|.|+||+|..|.+|.||+.||..    +.|+..|.|.++....+
T Consensus       236 nv~hp-v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~~g~~hsnqh~mke~Ss~ks  294 (434)
T KOG4301|consen  236 NVFHP-VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGHAGGSHSNQHQMKEYSSWKS  294 (434)
T ss_pred             ccCCC-ccCcceecccccchhhhHhhcCCccccchhhccccCCCCcchHHHHHHhhcccC
Confidence            68888 999999999999999999999999999999985    57999999988887765

>KOG0457|consensus

Probab=98.30  E-value=2.5e-07  Score=90.20  Aligned_cols=53  Identities=43%  Similarity=0.859  Sum_probs=42.6

Q ss_pred             CCcCCCCCCCceee-eeeeeccCCCCeeecccccC----cccCCCceeEEEeeCCCceee
Q psy7971          85 GTMCDFCKQQPIYG-IRWKCAECSNYDLCSICYHA----EKHNLRHRFYRINFPGSERVL  139 (276)
Q Consensus        85 ~v~Cd~C~~~pI~G-~RykC~~C~dfDLC~~C~~~----~~H~~~H~f~ri~~P~~~~V~  139 (276)
                      .+.||+|. .-|.| +|.||++|+|||||-.||..    +.|+..|++ +|..+.+.++.
T Consensus        14 ky~C~~C~-~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Y-rim~~~s~~i~   71 (438)
T KOG0457|consen   14 KYNCDYCS-LDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPY-RIMDTNSFPIL   71 (438)
T ss_pred             CCCCccHh-HHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCc-eeecCCCCCCC
Confidence            36899999 55666 56999999999999999995    589999998 66666554443

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=97.86  E-value=9.1e-06  Score=56.39  Aligned_cols=40  Identities=23%  Similarity=0.565  Sum_probs=33.7

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCce
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHR  126 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~  126 (276)
                      +.|+.|+ ..+..+||+|+.+.+||||..||..+.....|.
T Consensus         1 y~C~~Cg-~D~t~vryh~~~~~~~dLC~~CF~~G~f~~~~~   40 (45)
T cd02336           1 YHCFTCG-NDCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQ   40 (45)
T ss_pred             CcccCCC-CccCceEEEecCCCccccChHHHhCcCCCCCCc
Confidence            4699999 555679999999999999999999887665554

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.83  E-value=6.4e-06  Score=78.08  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=43.7

Q ss_pred             CCcCCCCCCCceeeeeeeeccCCCCeeecccccC----cccCCCceeEEEeeCCCceee
Q psy7971          85 GTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA----EKHNLRHRFYRINFPGSERVL  139 (276)
Q Consensus        85 ~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~----~~H~~~H~f~ri~~P~~~~V~  139 (276)
                      .+.||.|.+.-..-++.+|..|++||||-.||.+    +.|++.|++.-| .-.+-++.
T Consensus         5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRii-etnsypI~   62 (432)
T COG5114           5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRII-ETNSYPIG   62 (432)
T ss_pred             eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEe-eccCcccc
Confidence            3679999977777899999999999999999985    689999998444 44444443

>KOG4582|consensus

Probab=96.09  E-value=0.0022  Score=60.08  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             eeeecCceEeecCCCccccCCCCC---CCcceEEEeCC---CCcCCCCceeEEEecCCCceeeeec--cCCeeeEEEeeC
Q psy7971         152 RGIFPGARVVRGVDWQWEDQDGGN---GRRGKVNEVQD---WSAASPRSAAYIVWDNGAKNLYRVG--FEGMADLKVLND  223 (276)
Q Consensus       152 ~g~~~g~~v~rG~DW~w~dQDgg~---g~~G~V~~~~~---w~~~~~~~~v~V~Wd~g~~n~YR~G--~~g~~Dl~~~~~  223 (276)
                      ....++.+|+||.||.|-.+...+   ++.+++.+...   -+.+.....+.+.||.....+|+.+  +.+..+|..+.+
T Consensus        59 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~k~~~~~~~~~~~~~~~~  138 (278)
T KOG4582|consen   59 DEDGVGMRVVRGNDLFDVTNQRLADEIGHVNAVRSFNSAAPSSGSSTPATVPVPWDKIPRSIIKVLEKYQKLASLVITLN  138 (278)
T ss_pred             hccccceeEEecCCceEeecccCccccccccceeeeccccccccccCccccccccchhhhhhhhhhHHHhhhhhhhhhcC
Confidence            457789999999999999994444   45555554322   2335567778899999999999999  599999999999


Q ss_pred             Cccccccch-----hhhhhhccCCchhh
Q psy7971         224 AKALRHHTL-----SQLRLLRDVPDVGK  246 (276)
Q Consensus       224 ~~~~~~h~~-----t~~~ll~~~p~~~~  246 (276)
                      +..+.+|..     +.||-|..-|++|-
T Consensus       139 ~~~~~~H~~~~~~~v~CD~C~~~~IvG~  166 (278)
T KOG4582|consen  139 PVVGEMHPNISKLSVPCDNCGKPGIVGA  166 (278)
T ss_pred             CCccccCCCcccccccCCCccCCccccc
Confidence            999999998     99999999888775

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=93.76  E-value=0.027  Score=35.34  Aligned_cols=27  Identities=44%  Similarity=1.143  Sum_probs=12.5

Q ss_pred             cCCCCCCCceee-eeeeeccCCCCeeeccc
Q psy7971          87 MCDFCKQQPIYG-IRWKCAECSNYDLCSIC  115 (276)
Q Consensus        87 ~Cd~C~~~pI~G-~RykC~~C~dfDLC~~C  115 (276)
                      .|+.|+ .++.+ .-|.|..| ||+|...|
T Consensus         2 ~C~~C~-~~~~~~~~Y~C~~C-df~lH~~C   29 (30)
T PF07649_consen    2 RCDACG-KPIDGGWFYRCSEC-DFDLHEEC   29 (30)
T ss_dssp             --TTTS-----S--EEE-TTT------HHH
T ss_pred             cCCcCC-CcCCCCceEECccC-CCccChhc
Confidence            599999 67777 99999999 88887776

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=89.10  E-value=0.34  Score=30.42  Aligned_cols=27  Identities=37%  Similarity=1.041  Sum_probs=23.0

Q ss_pred             cCCCCCCCceeee-eeeeccCCCCeeeccc
Q psy7971          87 MCDFCKQQPIYGI-RWKCAECSNYDLCSIC  115 (276)
Q Consensus        87 ~Cd~C~~~pI~G~-RykC~~C~dfDLC~~C  115 (276)
                      .|+.|. ..+.|. .|+|..|. |+|-..|
T Consensus         2 ~C~~C~-~~~~~~~~Y~C~~c~-f~lh~~C   29 (30)
T PF03107_consen    2 WCDVCR-RKIDGFYFYHCSECC-FTLHVRC   29 (30)
T ss_pred             CCCCCC-CCcCCCEeEEeCCCC-CeEcCcc
Confidence            699998 678888 99999998 8887766

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>KOG1778|consensus

Probab=88.10  E-value=0.2  Score=48.05  Aligned_cols=43  Identities=28%  Similarity=0.750  Sum_probs=34.5

Q ss_pred             CCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEe
Q psy7971          85 GTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRIN  131 (276)
Q Consensus        85 ~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~  131 (276)
                      ...|..|...-  ..+|.|..|++||+|..||....|  .|.+....
T Consensus       169 ~~~c~~c~~~~--~~~~~c~~~~d~d~~~~~~~k~~h--~h~~~~~~  211 (319)
T KOG1778|consen  169 AYTCPICKLEV--LTAWHCEVCPDYDRCRACEEKPLH--PHLYEAME  211 (319)
T ss_pred             eeecCcccccc--ccccccccCCchhhhhcccCCCCC--Ccchhccc
Confidence            47899998443  789999999999999999998875  56654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2dk3_A	86	Solution Structure Of Mib-Herc2 Domain In Hect Doma		2e-07
3dkm_A	89	Crystal Structure Of The Hectd1 Cph Domain Length =		3e-07
2dip_A	98	Solution Structure Of The Zz Domain Of Zinc Finger		1e-04
2fc7_A	82	Solution Structure Of The Zz Domain Of Zzz3 Protein		2e-04

>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain Containing Protein 1 Length = 86

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 154 IFPGARVVRGVDWQWEDQDGGNGRRGKVN-EVQDWSAASPRSAAYIVWDNGAKNLYRVGF 212
           + PGARV+RG+DW+W DQDG     G V  E+ +           + WD G  N YR+G 
Sbjct: 16  MVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHN-------GWIDVTWDAGGSNSYRMGA 68
Query: 213 EGMADLKV 220
           EG  DLK+
Sbjct: 69  EGKFDLKL 76

>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain Length = 89

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 154 IFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFE 213
           + PGARV RG+DW+W DQDG     G V      +         + WD G  N YR+G E
Sbjct: 22  MVPGARVTRGLDWKWRDQDGSPQGEGTV------TGELHNGWIDVTWDAGGSNSYRMGAE 75
Query: 214 GMADLKV 220
           G  DLK+
Sbjct: 76  GKFDLKL 82

>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim Domain Containing Protein 2 Length = 98

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82  KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
           KH G  C+ CKQ PI G  +KC EC  Y LC  C+ +  H L H F
Sbjct: 28  KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTF 72

>pdb|2FC7|A Chain A, Solution Structure Of The Zz Domain Of Zzz3 Protein Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 81  VKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSIC--------YHAEKHNLRHRFYR 129
           V+H G  CD C  +PI G+RW C +C    + D C  C         H E H L    YR
Sbjct: 17  VQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQL-EPIYR 75
Query: 130 INFPGS 135
            + P S
Sbjct: 76  SSGPSS 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	2e-29
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	2e-21
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	3e-29
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	2e-20
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	3e-28
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	3e-20
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	1e-18
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	6e-14

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86

 Score =  106 bits (265), Expect = 2e-29
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 142 PRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWD 201
                +   ++ + PGARV+RG+DW+W DQDG     G V      +         + WD
Sbjct: 4   GSSGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV------TGELHNGWIDVTWD 57

Query: 202 NGAKNLYRVGFEGMADLKVLNDAKA 226
            G  N YR+G EG  DLK+      
Sbjct: 58  AGGSNSYRMGAEGKFDLKLAPGYSG 82

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86

 Score = 84.6 bits (209), Expect = 2e-21
 Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 5  SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
          SG R+        GARVIRG DWKW  QDG     GTV        + V WD G + +YR
Sbjct: 6  SGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYR 65

Query: 65 --CAGAFDLRILDSAPTG 80
              G FDL++       
Sbjct: 66 MGAEGKFDLKLAPGYSGP 83

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} Length = 89

 Score =  105 bits (264), Expect = 3e-29
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 135 SERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRS 194
                   R       ++ + PGARV RG+DW+W DQDG     G V      +      
Sbjct: 3   HHHHHSSGRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTV------TGELHNG 56

Query: 195 AAYIVWDNGAKNLYRVGFEGMADLKV 220
              + WD G  N YR+G EG  DLK+
Sbjct: 57  WIDVTWDAGGSNSYRMGAEGKFDLKL 82

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} Length = 89

 Score = 82.3 bits (203), Expect = 2e-20
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 17 VGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR--CAGAFDLRIL 74
           GARV RG DWKW  QDG     GTV        + V WD G + +YR    G FDL++ 
Sbjct: 24 PGARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLA 83

Query: 75 DSAP 78
              
Sbjct: 84 PGYD 87

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98

 Score =  103 bits (257), Expect = 3e-28
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 67  GAFDLRILDSAPTGV---------KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYH 117
           G+  L    ++   V         KH G  C+ CKQ PI G  +KC EC  Y LC  C+ 
Sbjct: 4   GSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 63

Query: 118 AEKHNLRHRFYRINFPGSERVLLEPRRKSKKISVRG 153
           +  H L H F        +   LE R         G
Sbjct: 64  SYCH-LSHTFTFREKRNQKWRSLEKRADEVSGPSSG 98

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82

 Score = 82.0 bits (202), Expect = 3e-20
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 66  AGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAEC---SNYDLCSICY----HA 118
           +G+   ++   +   V+H G  CD C  +PI G+RW C +C    + D C  C       
Sbjct: 3   SGSSGQQMQAESG-FVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET 61

Query: 119 EKHNLRHRFYRINFPGSER 137
           + H   H+   I       
Sbjct: 62  DIHKEDHQLEPIYRSSGPS 80

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63

 Score = 76.8 bits (189), Expect = 1e-18
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 76  SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRHRFYRI 130
           S  +GV H    C +C  + + G R++C +C NY LC  C+        H+ +H+    
Sbjct: 3   SGSSGVFH-PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52

 Score = 64.0 bits (156), Expect = 6e-14
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
           C+ CK       RW C  C +YDLC  CY+ + H   H+  +    
Sbjct: 9   CNECK--HHVETRWHCTVCEDYDLCINCYNTKSH--THKMVKWGLG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	99.94
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	99.93
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	99.88
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	99.79
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	99.71
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	99.7
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	99.7
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	99.44
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	88.63
3nis_A	82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	86.76
3ny3_A	75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	83.09

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1

Probab=99.94  E-value=3.9e-28  Score=186.78  Aligned_cols=76  Identities=37%  Similarity=0.687  Sum_probs=68.8

Q ss_pred             cCcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEeeCCc
Q psy7971         146 SKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK  225 (276)
Q Consensus       146 ~~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~~~~~  225 (276)
                      .+++.+++|++|+||+|||||||+|||||+|++|||+++.      .+.+|.|+||||..|+||+|++|+|||++++.++
T Consensus         8 ~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~------~~~wv~V~Wd~G~~n~YR~G~~G~~DL~v~~~~~   81 (86)
T 2dk3_A            8 VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGEL------HNGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGYS   81 (86)
T ss_dssp             CSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCC------CSSEEEEEETTTEEEEEEBSTTSCBCEEECTTCC
T ss_pred             hhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEEc------CCCEEEEEeCCCCeeeEEecCCCCEEEEEecCCc
Confidence            4567789999999999999999999999999999999753      2556999999999999999999999999999887


Q ss_pred             cc
Q psy7971         226 AL  227 (276)
Q Consensus       226 ~~  227 (276)
                      |.
T Consensus        82 ~~   83 (86)
T 2dk3_A           82 GP   83 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1

Probab=99.93  E-value=1.7e-27  Score=184.46  Aligned_cols=75  Identities=39%  Similarity=0.683  Sum_probs=67.9

Q ss_pred             cccccCcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEe
Q psy7971         142 PRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVL  221 (276)
Q Consensus       142 pRr~~~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~  221 (276)
                      -|.+.+.+.+++|++|+||+|||||+|+||||++|++|||+++.      +++++.|+||+|.+|+||+|++|+|||+++
T Consensus        10 ~~~~~~~q~lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~------~~gwv~V~Wd~G~~n~YR~G~~G~~DL~~a   83 (89)
T 3dkm_A           10 GRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGEL------HNGWIDVTWDAGGSNSYRMGAEGKFDLKLA   83 (89)
T ss_dssp             CCCCHHHHHHHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCC------BTTEEEEEETTSCEEEEEBSGGGCBCEEEC
T ss_pred             hhHHHHHHHhhccccCcEEEeCCCCcccccCCCCCcccEEeEec------CCCeEEEEeCCCCeeeEeecCCCcEeeEEc
Confidence            46677788899999999999999999999999999999999642      356689999999999999999999999996


Q ss_pred             e
Q psy7971         222 N  222 (276)
Q Consensus       222 ~  222 (276)
                      .
T Consensus        84 ~   84 (89)
T 3dkm_A           84 P   84 (89)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1

Probab=99.88  E-value=2.8e-23  Score=159.74  Aligned_cols=76  Identities=42%  Similarity=0.686  Sum_probs=71.0

Q ss_pred             CCCCcccccchhhccccceEEeCCCCccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee--cCceeeeeecCC
Q psy7971           2 EGSSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC--AGAFDLRILDSA   77 (276)
Q Consensus         2 ~~~~~~~~~~~~~~~vG~RVvRGpdWkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD~a   77 (276)
                      .|||..|.+++..|.+|+||||||||||++|||+++++|||+++..++++.|+||++..++||+  +++|||++++-+
T Consensus         3 ~~~~~~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~~~~wv~V~Wd~G~~n~YR~G~~G~~DL~v~~~~   80 (86)
T 2dk3_A            3 SGSSGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGY   80 (86)
T ss_dssp             CCCCCCSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEEEEEBSTTSCBCEEECTTC
T ss_pred             cchhhhhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEEcCCCEEEEEeCCCCeeeEEecCCCCEEEEEecCC
Confidence            4788899999999999999999999999999999999999999988999999999999999998  589999998643

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1

Probab=99.79  E-value=5.6e-20  Score=142.37  Aligned_cols=64  Identities=41%  Similarity=0.684  Sum_probs=58.3

Q ss_pred             hhhccccceEEeCCCCccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee--cCceeeeeec
Q psy7971          12 FAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC--AGAFDLRILD   75 (276)
Q Consensus        12 ~~~~~vG~RVvRGpdWkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD   75 (276)
                      +..+.+|+||||||||||++|||+++++|+|+++..++++.|+||++..++||+  .++|||.++.
T Consensus        19 lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~~~gwv~V~Wd~G~~n~YR~G~~G~~DL~~a~   84 (89)
T 3dkm_A           19 LKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAP   84 (89)
T ss_dssp             HHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCCBTTEEEEEETTSCEEEEEBSGGGCBCEEECT
T ss_pred             hhccccCcEEEeCCCCcccccCCCCCcccEEeEecCCCeEEEEeCCCCeeeEeecCCCcEeeEEcc
Confidence            345679999999999999999999999999999878899999999999999998  5899999863

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.71  E-value=7.3e-18  Score=129.43  Aligned_cols=66  Identities=29%  Similarity=0.658  Sum_probs=59.3

Q ss_pred             eeeecCCCCCCCCCCCcCCCCCCCceeeeeeeeccCCC---CeeecccccC----cccCCCceeEEEeeCCCc
Q psy7971          71 LRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSN---YDLCSICYHA----EKHNLRHRFYRINFPGSE  136 (276)
Q Consensus        71 L~lvD~ap~~v~H~~v~Cd~C~~~pI~G~RykC~~C~d---fDLC~~C~~~----~~H~~~H~f~ri~~P~~~  136 (276)
                      |..+++++..++|.++.||+|.+.||.|+||||++|+|   ||||+.||..    ..|++.|+|.+|.+|...
T Consensus         7 ~~~~~~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p   79 (82)
T 2fc7_A            7 GQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP   79 (82)
T ss_dssp             CSSSCSSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred             hhhhhccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence            44567777789999999999999999999999999999   9999999985    679999999999998753

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=6.6e-18  Score=123.61  Aligned_cols=56  Identities=30%  Similarity=0.836  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEEEee
Q psy7971          76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYRINF  132 (276)
Q Consensus        76 ~ap~~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~ri~~  132 (276)
                      +++.++.|+ +.||+|.+.||.|+||||++|+|||||+.||..+    .|++.|+|.+|.+
T Consensus         3 s~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t   62 (63)
T 2e5r_A            3 SGSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS   62 (63)
T ss_dssp             CCSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred             CCcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence            356688998 9999999999999999999999999999999965    4999999999875

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.70  E-value=8.7e-18  Score=133.02  Aligned_cols=64  Identities=39%  Similarity=0.649  Sum_probs=57.9

Q ss_pred             CCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCCCceeeecccc
Q psy7971          80 GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRR  144 (276)
Q Consensus        80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~~~~V~lepRr  144 (276)
                      .++|+++.||+|.+.||.|+||||+.|+|||||+.||..+.| +.|+|.++.+|...-..++.|.
T Consensus        26 ~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H-~~H~f~~i~~~~~~w~~~e~~~   89 (98)
T 2dip_A           26 LDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRSLEKRA   89 (98)
T ss_dssp             CSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG-GGSCEEECCSSSCCCEECCCCC
T ss_pred             ccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCC-CCCCeeEecCCCCCCccccccc
Confidence            589999999999999999999999999999999999999998 8999999999877655566654

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=99.44  E-value=2.2e-14  Score=101.17  Aligned_cols=49  Identities=31%  Similarity=0.823  Sum_probs=43.5

Q ss_pred             CCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCC
Q psy7971          82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPG  134 (276)
Q Consensus        82 ~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~  134 (276)
                      .|..+.||+|.+. | |.||||++|+|||||+.||..+.|  .|+|.++..|.
T Consensus         3 ~~~~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~~H--~H~m~~~~~~l   51 (52)
T 1tot_A            3 DRFVYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTKSH--THKMVKWGLGL   51 (52)
T ss_dssp             CSSCEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHHCC--CSSEEEECSSC
T ss_pred             CcCEEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCCCC--CCceEEecCCC
Confidence            3557899999965 5 999999999999999999999888  79999998764

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=88.63  E-value=0.16  Score=38.65  Aligned_cols=30  Identities=30%  Similarity=0.706  Sum_probs=25.8

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeeccccc
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYH  117 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~  117 (276)
                      ..||.|.. .+.|.+|+|..| ||+|=..|..
T Consensus        48 ~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~   77 (89)
T 1v5n_A           48 YTCDKCEE-EGTIWSYHCDEC-DFDLHAKCAL   77 (89)
T ss_dssp             CCCTTTSC-CCCSCEEECTTT-CCCCCHHHHH
T ss_pred             eEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcC
Confidence            68999995 478999999999 7888888865

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A

Probab=86.76  E-value=0.76  Score=34.65  Aligned_cols=50  Identities=26%  Similarity=0.516  Sum_probs=34.7

Q ss_pred             CCCCCCCcCCCCCCCceeeeeeeeccCC---CCeeecccccCcccCCCceeEEEee
Q psy7971          80 GVKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSICYHAEKHNLRHRFYRINF  132 (276)
Q Consensus        80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~---dfDLC~~C~~~~~H~~~H~f~ri~~  132 (276)
                      ...|++-.|.-  .-..--+-|+|..|.   .+-||..||....| ..|.+.....
T Consensus         3 ~~~h~g~~Cg~--vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H-~gH~~~~~~s   55 (82)
T 3nis_A            3 VHKHTGRNCGR--KFKIGEPLYRCHECGCDDTCVLCIHCFNPKDH-VNHHVCTDIC   55 (82)
T ss_dssp             CCCCTTSCCCC--BCCTTCEEEEETTTBSSTTCCBCTTTCCGGGG-TTSCEEEEEC
T ss_pred             ccccCCCCCCC--cccCCCEEEEeeccCCCCCceEchhhCCCCCc-CCceEEEEEe
Confidence            35687777741  111123579999995   56789999999888 4888876654

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A

Probab=83.09  E-value=0.63  Score=34.49  Aligned_cols=33  Identities=24%  Similarity=0.630  Sum_probs=26.1

Q ss_pred             eeeeeccCC---CCeeecccccCcccCCCceeEEEee
Q psy7971          99 IRWKCAECS---NYDLCSICYHAEKHNLRHRFYRINF  132 (276)
Q Consensus        99 ~RykC~~C~---dfDLC~~C~~~~~H~~~H~f~ri~~  132 (276)
                      +-|+|..|.   ..-||..||....| ..|.+..+..
T Consensus        16 ~~Y~C~~C~~d~tc~lC~~CF~~~~H-~gH~~~~~~s   51 (75)
T 3ny3_A           16 PTYSCRDCAVDPTCVLCMECFLGSIH-RDHRYRMTTS   51 (75)
T ss_dssp             EEEEETTTBSSTTCCBCHHHHHTSGG-GGSCEEEEEC
T ss_pred             EEEECccCCCCCCeeEChHHCCCCCc-CCceEEEEEc
Confidence            568999995   45689999999888 5888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d2dk3a1	73	b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hec	3e-28
d2dk3a1	73	b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hec	6e-23
d2dipa1	85	g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p	2e-18
d2fc7a1	69	g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p	4e-16
d1tota1	52	g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse	4e-13

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (252), Expect = 3e-28
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 151 VRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRV 210
           ++ + PGARV+RG+DW+W DQDG     G V                + WD G  N YR+
Sbjct: 6   LKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE------LHNGWIDVTWDAGGSNSYRM 59

Query: 211 GFEGMADLKV 220
           G EG  DLK+
Sbjct: 60  GAEGKFDLKL 69

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (217), Expect = 6e-23
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 17 VGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCA--GAFDLRI 73
           GARVIRG DWKW  QDG     GTV        + V WD G + +YR    G FDL++
Sbjct: 11 PGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKL 69

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 2e-18
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 80  GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVL 139
             KH G  C+ CKQ PI G  +KC EC  Y LC  C+ +  H L H F        +   
Sbjct: 19  LDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRS 77

Query: 140 LEPR 143
           LE R
Sbjct: 78  LEKR 81

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 4e-16
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 76  SAPTGVKHDGTMCDFCKQQPIYGIRWKCAEC---SNYDLCSICY----HAEKHNLRHRFY 128
           +    V+H G  CD C  +PI G+RW C +C    + D C  C       + H   H+  
Sbjct: 5   AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 64

Query: 129 RIN 131
            I 
Sbjct: 65  PIY 67

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (147), Expect = 4e-13
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 88  CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
           C+ CK       RW C  C +YDLC  CY+ + H   H+  +    
Sbjct: 9   CNECKHHV--ETRWHCTVCEDYDLCINCYNTKSHT--HKMVKWGLG 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2dk3a1	73	E3 ubiquitin-protein ligase hectd1 {Human (Homo sa	99.96
d2dk3a1	73	E3 ubiquitin-protein ligase hectd1 {Human (Homo sa	99.85
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	99.61
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	99.57
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	99.3
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	95.27

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-30  Score=192.65  Aligned_cols=70  Identities=40%  Similarity=0.766  Sum_probs=64.3

Q ss_pred             CcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEee
Q psy7971         147 KKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLN  222 (276)
Q Consensus       147 ~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~~  222 (276)
                      +++.+++||||+||+|||||||+|||||+|++|||+++      .++++|.|+||+|.+|+||+|++|+|||+|+.
T Consensus         2 ~~~~~k~i~~G~RVvRG~DWkW~dQDGG~g~~GtV~~~------~~~~~v~V~Wd~G~~n~YR~G~~G~~DLk~~p   71 (73)
T d2dk3a1           2 RSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE------LHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAP   71 (73)
T ss_dssp             SSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSC------CCSSEEEEEETTTEEEEEEBSTTSCBCEEECT
T ss_pred             hhhhhccccCCCeEEECCCCCeeCcCCCCCccceEeee------CCCCEEEEEeCCCCcccccccCCCCEEEEecC
Confidence            35568999999999999999999999999999999954      36789999999999999999999999999964

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.7e-22  Score=147.59  Aligned_cols=67  Identities=40%  Similarity=0.675  Sum_probs=61.4

Q ss_pred             ccchhhccccceEEeCCCCccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee--cCceeeeeec
Q psy7971           9 ANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC--AGAFDLRILD   75 (276)
Q Consensus         9 ~~~~~~~~vG~RVvRGpdWkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD   75 (276)
                      ..-+..|.+|+||||||||||++|||+++++|||+++..++++.|+||++..++||+  +++|||++++
T Consensus         3 ~~~~k~i~~G~RVvRG~DWkW~dQDGG~g~~GtV~~~~~~~~v~V~Wd~G~~n~YR~G~~G~~DLk~~p   71 (73)
T d2dk3a1           3 SQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAP   71 (73)
T ss_dssp             SCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEEEEEBSTTSCBCEEECT
T ss_pred             hhhhccccCCCeEEECCCCCeeCcCCCCCccceEeeeCCCCEEEEEeCCCCcccccccCCCCEEEEecC
Confidence            345667889999999999999999999999999999888899999999999999998  6899999863

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-16  Score=120.30  Aligned_cols=67  Identities=37%  Similarity=0.618  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCCCceeeeccc
Q psy7971          76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPR  143 (276)
Q Consensus        76 ~ap~~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~~~~V~lepR  143 (276)
                      ++.....|.++.||+|.+.||.|.||+|..|+|||||+.||.+..| +.|+|.....+...-..++.|
T Consensus        15 ~~~~~~~H~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~~h-~~H~f~~~~~~~~~w~~~~~r   81 (85)
T d2dipa1          15 EKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRSLEKR   81 (85)
T ss_dssp             CSSCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG-GGSCEEECCSSSCCCEECCCC
T ss_pred             cccccCccCCeECCCCCCCCcCcceEEcCCCCCccchHHHHCcCCC-CCCCcceecCCCCCccccccc
Confidence            3455679999999999999999999999999999999999987665 799997776666544444444

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=111.69  Aligned_cols=55  Identities=35%  Similarity=0.796  Sum_probs=48.8

Q ss_pred             CCCCCCCCCcCCCCCCCceeeeeeeeccCC---CCeeecccccC----cccCCCceeEEEee
Q psy7971          78 PTGVKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSICYHA----EKHNLRHRFYRINF  132 (276)
Q Consensus        78 p~~v~H~~v~Cd~C~~~pI~G~RykC~~C~---dfDLC~~C~~~----~~H~~~H~f~ri~~  132 (276)
                      ...+.|.++.||+|.+.||.|.||+|+.||   |||||+.||..    ..|...|+|..|..
T Consensus         7 ~~~v~H~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~~   68 (69)
T d2fc7a1           7 SGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR   68 (69)
T ss_dssp             TTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred             CCCceECCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEeec
Confidence            346899999999999999999999999995   99999999975    46899999988753

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.2e-13  Score=94.41  Aligned_cols=45  Identities=33%  Similarity=0.929  Sum_probs=39.0

Q ss_pred             CcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCC
Q psy7971          86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPG  134 (276)
Q Consensus        86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~  134 (276)
                      +.||+|++ .| |.||||++|+|||||+.||.+..|  .|+|.+|..+.
T Consensus         7 ~tCd~C~~-~i-~~Ry~C~~C~DfDLC~~C~~~~~H--~H~m~k~~~~~   51 (52)
T d1tota1           7 YTCNECKH-HV-ETRWHCTVCEDYDLCINCYNTKSH--THKMVKWGLGL   51 (52)
T ss_dssp             EEETTTTE-EE-SSEEEESSSSSCEECHHHHHHHCC--CSSEEEECSSC
T ss_pred             EECcCCCC-cC-CCceECCCCCCcccHHHHhcCCCc--CCCeEEecCCC
Confidence            57999984 44 899999999999999999998887  69999987653

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.0041  Score=46.02  Aligned_cols=32  Identities=28%  Similarity=0.624  Sum_probs=28.3

Q ss_pred             CCcCCCCCCCceeeeeeeeccCCCCeeecccccC
Q psy7971          85 GTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA  118 (276)
Q Consensus        85 ~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~  118 (276)
                      ...|+.|+ .++.|.+|+|..| ||+|...|-..
T Consensus        47 ~~~C~~C~-~~~~g~~Y~C~~C-~f~LH~~CA~~   78 (89)
T d1v5na_          47 VYTCDKCE-EEGTIWSYHCDEC-DFDLHAKCALN   78 (89)
T ss_dssp             SCCCTTTS-CCCCSCEEECTTT-CCCCCHHHHHC
T ss_pred             CCEeCCCC-CCcCCcEeEeccC-CCEecHHHcCC
Confidence            46899999 6789999999999 79999999874