Psyllid ID: psy8036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHccccEEcccccccHHHHHHHHHHHccccEEEccccccEEEEEEccccccccccEEEEEEEEEccEEEEEEEEcccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHcccHcccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccHHHcccHHHHHHHHccccEEccccccEEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHEEccc
Coil and Loop (DISEMBL)
MRIATGASMKGIisnatastpaptlnlqevcpevSMDRLIKSLGYEYLRTkaitmedggegqiakqrgfqtinptddwfpglAKIQSEYQSwewrygstpkftisqsfdipdehgapgqLVISLEIVKGLIESvcfkippalvndehFLQDAELLCSVQGRKFTETALDDLKEALTSrgqtylgtSLDRLVTNF
Flexible Loop (DISEMBL)
mriatgasmkgiisnatastpaptlnLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEaltsrgqtylgtsldrlvtnf
Low Complexity Region (SEG)
MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Disordered region (IsUnstruct)
************************LNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS*GQTYLG**********
Disordered Region (DISOPRED)
*RIAT**SM*GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Disordered Region (DISEMBL)
********MKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Disordered Region (DISPRO)
*****GAS*KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVTNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q8VCM4	373	Lipoyltransferase 1, mito	yes	N/A	0.644	0.335	0.335	5e-13
O46419	373	Lipoyltransferase 1, mito	yes	N/A	0.603	0.313	0.343	8e-13
Q9Y234	373	Lipoyltransferase 1, mito	yes	N/A	0.737	0.383	0.339	7e-12
O13629	363	Putative lipoate-protein	yes	N/A	0.298	0.159	0.347	0.0007

>sp|Q8VCM4|LIPT_MOUSE Lipoyltransferase 1, mitochondrial OS=Mus musculus GN=Lipt1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 18/143 (12%)

Query: 2   RIATGASMK----GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMED 57
           R A  +S+K    GI SNAT S P+   NL E    ++ + L+ ++  EY     +    
Sbjct: 186 RTALSSSLKSPYCGIKSNATPSIPSAVKNLLERDSTLTCEVLMSAVAAEYAAHHQV---- 241

Query: 58  GGEGQIAKQRGFQTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGA 116
             +G +        INP D+  FPG+ +   E QSWEW YG TPKFT+  +F +P E  A
Sbjct: 242 --DGHV------NLINPADETMFPGINRKVKELQSWEWVYGRTPKFTVDTTFHVPYEQ-A 292

Query: 117 PGQLVISLEIVKGLIESVCFKIP 139
             ++ + +++  G IE+   K P
Sbjct: 293 HLEIQVFMDVKNGRIETCAIKAP 315

Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|O46419|LIPT_BOVIN Lipoyltransferase 1, mitochondrial OS=Bos taurus GN=LIPT1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 14/131 (10%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +GI SNATASTPA   NL E  P ++ + +I ++  EY  +  I                
Sbjct: 198 QGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQI------------DNHI 245

Query: 70  QTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
             INPTD+  FPG+     E Q+WEW YG TPKF++  SF +  E  +  ++ + +++  
Sbjct: 246 HLINPTDETVFPGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHEQ-SHVEIKVFIDVKN 304

Query: 129 GLIESVCFKIP 139
           G IE    + P
Sbjct: 305 GRIEVCNIEAP 315

Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y234|LIPT_HUMAN Lipoyltransferase 1, mitochondrial OS=Homo sapiens GN=LIPT1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 19/162 (11%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +GI SNATAS P+   NL E  P ++ + L+ ++  EY     I                
Sbjct: 198 QGIRSNATASIPSLVKNLLEKDPTLTCEVLMNAVATEYAAYHQI------------DNHI 245

Query: 70  QTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
             INPTD+  FPG+     E Q+WEW YG TPKF+I+ SF +  E  +  ++ + ++I  
Sbjct: 246 HLINPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHVLYEQ-SHLEIKVFIDIKN 304

Query: 129 GLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKF--TETAL 168
           G IE    + P   +  E  ++D +L  S+ G KF  TET +
Sbjct: 305 GRIEICNIEAPDHWLPLE--IRD-KLNSSLIGSKFCPTETTM 343

Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O13629|LPLA_SCHPO Putative lipoate-protein ligase A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aim22 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 80  PGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEI--VKGLIESVCFK 137
           P + K  +E QSWEW +G TP F          +H    +L +S++I  V G +E V F 
Sbjct: 264 PSILKAVNELQSWEWTFGQTPSF---------KQHLESTELSVSMDISVVHGRLEKVIFS 314

Query: 138 IPPALVNDE 146
            P A +  E
Sbjct: 315 TPNATLEHE 323

Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl onto the lipoyl domains of lipoate-dependent enzymes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
357622339	363	hypothetical protein KGM_17661 [Danaus p	0.881	0.471	0.469	1e-41
350417636	412	PREDICTED: lipoyltransferase 1, mitochon	0.896	0.422	0.417	9e-39
380014012	395	PREDICTED: lipoyltransferase 1, mitochon	0.948	0.465	0.419	1e-38
328787381	400	PREDICTED: lipoyltransferase 1, mitochon	0.824	0.4	0.440	2e-38
383857102	393	PREDICTED: lipoyltransferase 1, mitochon	0.948	0.468	0.408	2e-38
340712273	395	PREDICTED: lipoyltransferase 1, mitochon	0.948	0.465	0.413	3e-38
332024970	400	Lipoyltransferase 1, mitochondrial [Acro	0.917	0.445	0.374	8e-36
242016690	361	lipoyltransferase 1, putative [Pediculus	0.902	0.484	0.413	8e-35
91093875	389	PREDICTED: similar to GA21085-PA isoform	0.912	0.455	0.408	4e-34
307194201	401	Lipoyltransferase 1, mitochondrial [Harp	0.840	0.406	0.390	1e-32

>gi|357622339|gb|EHJ73856.1| hypothetical protein KGM_17661 [Danaus plexippus]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 123/179 (68%), Gaps = 8/179 (4%)

Query: 4   ATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQI 63
           A      GI + ATASTP+P +NL +V   V++D L  ++GYE+LRT A+ +EDGGE QI
Sbjct: 157 ALAKREHGIQTKATASTPSPVVNLVDVNNRVTVDSLQIAVGYEFLRTPALHLEDGGENQI 216

Query: 64  AKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPG----- 118
           +KQRGFQ INPT+DWFPGL++++ E Q+WEW +G TP+FT+S+SF +P++  AP      
Sbjct: 217 SKQRGFQFINPTEDWFPGLSELKHELQTWEWSFGRTPEFTVSRSFPVPEDLLAPSKVYSA 276

Query: 119 --QLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEAL 175
             +L I++ + KGLI  V   IPP LV +  F  +A ++  ++G++FT  AL  L+EA+
Sbjct: 277 TQELTITMTVEKGLINDVTLNIPPGLV-ESGFHGEASVITHLKGKRFTSEALTALQEAM 334

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417636|ref|XP_003491519.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus impatiens]

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 117/175 (66%), Gaps = 1/175 (0%)

Query: 1   MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGE 60
           + +A      GI +NATAS  +   NL ++   + MD+LI ++G+EYLRTKA+ ++DGG+
Sbjct: 217 LSLALEKKKDGIETNATASIRSSIKNLIDINSHIRMDKLITAIGWEYLRTKALVLDDGGQ 276

Query: 61  GQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQL 120
             I +Q+GFQ INPT+DWFPGL K+ SE++SWEW YG TPKFT+++  D+P E     Q 
Sbjct: 277 DLIQRQKGFQYINPTEDWFPGLDKLISEFRSWEWNYGKTPKFTVTRVVDVPTEDNKVHQF 336

Query: 121 VISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEAL 175
            ++LEI  G+IE +  K+P  LV+ + F QD  ++ +++G ++    ++++  A+
Sbjct: 337 NLALEIQNGIIEEIKMKLPANLVSKD-FSQDVSVITNLRGTRYDHGVMENIITAI 390

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014012|ref|XP_003691038.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Apis florea]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 123/186 (66%), Gaps = 2/186 (1%)

Query: 1   MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGE 60
           + +A      GI +NAT ST +P  NL ++   + MD+LI ++G+EYLRTKA+ +EDGG+
Sbjct: 200 LYLALEEKKNGIETNATVSTRSPIKNLIDINCHIQMDKLITAIGWEYLRTKALVLEDGGQ 259

Query: 61  GQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQL 120
             I  Q+GFQ INPT+DWFPGL K+ SE++SWEW YG TPKFT+++  D+   +    +L
Sbjct: 260 DLIQCQKGFQYINPTEDWFPGLNKLISEFRSWEWNYGKTPKFTVTRVLDMVTRNNKVHRL 319

Query: 121 VISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQ 180
            ++LEI  G+IE +  ++P +LV  E F QDA ++ +++G ++    ++++  A+  +  
Sbjct: 320 NLTLEIQNGIIEEIKMRLPASLV-AEDFSQDASVITNLRGSRYNHEIMENIITAIGCKTV 378

Query: 181 TYLGTS 186
           T L TS
Sbjct: 379 T-LSTS 383

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787381|ref|XP_624104.3| PREDICTED: lipoyltransferase 1, mitochondrial-like isoform 2 [Apis mellifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 11  GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQ 70
           GI +NAT ST +P  NL ++   + MD+LI ++G+EYLRTKA+ +EDGG+  I  Q+GFQ
Sbjct: 215 GIETNATVSTRSPIKNLIDINCHIQMDKLITAIGWEYLRTKALVLEDGGQDHIQYQKGFQ 274

Query: 71  TINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGL 130
            INPT+DWFPGL K+ SE++SWEW YG TPKFT+++  D+   +    +  ++LEI  G+
Sbjct: 275 YINPTEDWFPGLNKLISEFRSWEWNYGKTPKFTVTRVLDMVTRNNKVHRFNLTLEIQNGI 334

Query: 131 IESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDL 171
           IE +  ++P +LV  E F QDA ++ +++G ++    ++++
Sbjct: 335 IEEIKMRLPASLV-AEDFSQDASVITNLRGSRYNHEIMENI 374

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857102|ref|XP_003704045.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Megachile rotundata]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 124/186 (66%), Gaps = 2/186 (1%)

Query: 1   MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGE 60
           + +A      GI +NATAS  +P  NL EV   V MD+LIK++G+E+LRTKA+ +EDGG+
Sbjct: 198 LSLALEKKENGIETNATASIRSPIKNLIEVNSHVQMDKLIKAVGWEFLRTKALVLEDGGQ 257

Query: 61  GQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQL 120
             I +Q+GFQ INPT+DWFPGL ++ +E++SWEW YG TPKFT+++  D+P       + 
Sbjct: 258 NLIQRQKGFQYINPTEDWFPGLDELVNEFRSWEWNYGKTPKFTVTRVLDVPLRDSKVHRF 317

Query: 121 VISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQ 180
            ++L+I  G+IE +  ++P  LV+ + F Q+A ++ +++G ++    ++++  A+  +  
Sbjct: 318 TLTLDIQSGIIEEIKMRLPADLVSKD-FSQEASVITNLRGTRYDHEVMENIISAIGCKTV 376

Query: 181 TYLGTS 186
           T L TS
Sbjct: 377 T-LSTS 381

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712273|ref|XP_003394686.1| PREDICTED: lipoyltransferase 1, mitochondrial-like [Bombus terrestris]

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 120/186 (64%), Gaps = 2/186 (1%)

Query: 1   MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGE 60
           + +A      GI +NAT S  +   NL ++   + MD+LI ++G+EYLRTKA+ +EDGG+
Sbjct: 200 LSLALEKKKDGIETNATTSIRSSIKNLIDINSHIRMDKLITAIGWEYLRTKALVLEDGGQ 259

Query: 61  GQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQL 120
             I +Q+GFQ INPT+DWFPGL K+ SE++SWEW YG TPKFT+++  D+P E     Q 
Sbjct: 260 DLIQRQKGFQYINPTEDWFPGLDKLISEFRSWEWNYGKTPKFTVTRVVDVPTEDNKVHQF 319

Query: 121 VISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQ 180
            + LEI  G+IE +  K+P  LV+ + F QD  ++ +++G ++    ++++  A+  +  
Sbjct: 320 NLVLEIQNGIIEEIKMKLPANLVSKD-FSQDVSVITNLRGTRYDHGVMENIITAIGCKTV 378

Query: 181 TYLGTS 186
           T L TS
Sbjct: 379 T-LSTS 383

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024970|gb|EGI65157.1| Lipoyltransferase 1, mitochondrial [Acromyrmex echinatior]

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 113/179 (63%), Gaps = 1/179 (0%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
            GI++NAT S  +PT+NL +V   + MD+L+ ++G+EYLRTKA  +EDG    + +Q+GF
Sbjct: 211 NGIVTNATTSIRSPTMNLIDVNRNIQMDKLLSAIGWEYLRTKAFALEDGRYDLVEQQKGF 270

Query: 70  QTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKG 129
           + INPT+DWFPG+     E++SW+W +G TPKF ++++ D P   G   +L +SLE+  G
Sbjct: 271 KFINPTEDWFPGIDNFTGEFRSWDWNFGRTPKFIVTRTLDFPAHDGKIYRLNLSLEVQNG 330

Query: 130 LIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLD 188
            +E +   +P  LV+ + F QDA ++ +++G K+     +++  A+  +       S+D
Sbjct: 331 FVEEIRMSLPAGLVSTD-FAQDASVISNIRGTKYNHDVTENIIAAIGGKTLNTTQQSID 388

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016690|ref|XP_002428883.1| lipoyltransferase 1, putative [Pediculus humanus corporis] gi|212513647|gb|EEB16145.1| lipoyltransferase 1, putative [Pediculus humanus corporis]

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 4/179 (2%)

Query: 1   MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGE 60
           ++ +  A+  G  +NAT S P+ T NL +    ++ +RL+ ++G+EYLRT A+T+EDGG 
Sbjct: 170 LKQSLNANRDGFETNATKSVPSHTKNLADNNDNINFERLLNAIGWEYLRTTALTLEDGGN 229

Query: 61  GQIAKQRGFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQS---FDIPDEHGAP 117
             I KQRGFQ INPTD WFPGL KI+ E+ SWEWR+G TPKFT+++S   FD P E    
Sbjct: 230 ELIGKQRGFQLINPTDQWFPGLDKIRDEFTSWEWRFGKTPKFTVTKSFPIFDDPAEKVNG 289

Query: 118 GQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176
             L ++L++ KG+I  V +++P             +LL ++ G+KF+    D ++++L+
Sbjct: 290 HNLKVTLKVEKGMIADVSYQLPENKTGSVSPCC-RDLLSNLYGKKFSSQTFDLIEKSLS 347

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093875|ref|XP_975811.1| PREDICTED: similar to GA21085-PA isoform 2 [Tribolium castaneum] gi|270014513|gb|EFA10961.1| hypothetical protein TcasGA2_TC004121 [Tribolium castaneum]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 117/186 (62%), Gaps = 9/186 (4%)

Query: 11  GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQ 70
           GI +NAT ST +  LNL E  P++ +  L K +G+EYLRT A++++DGG     +Q+GFQ
Sbjct: 201 GIETNATKSTKSKILNLCEENPKIKVPALYKVVGWEYLRTHALSVKDGGMELANQQKGFQ 260

Query: 71  TINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDE---HGAPGQLVISLEIV 127
            +NPT+ WFPG+ +I+   Q W+WR+G TPKFTIS+SF +P+       P  L +++ + 
Sbjct: 261 MVNPTEKWFPGIEEIRDNLQGWQWRFGKTPKFTISRSFTVPEHLISQDVPDDLKVTMVVE 320

Query: 128 KGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSL 187
            G I  V   +PP LV +  F  +  ++ S+ G KF+E ALD+L+ +L +     LG+  
Sbjct: 321 GGKISDVNLYVPPGLVANG-FSGNVNVITSLIGHKFSEEALDNLEWSLGA-----LGSDK 374

Query: 188 DRLVTN 193
           D+ VT+
Sbjct: 375 DKFVTD 380

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194201|gb|EFN76618.1| Lipoyltransferase 1, mitochondrial [Harpegnathos saltator]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 12  IISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQT 71
           II+NAT S  +P  NL +V P + +D+LI ++G EYLRT A+ ++DGG+  + KQ GFQ 
Sbjct: 217 IITNATTSVHSPIKNLLDVNPNIRIDKLITAVGNEYLRTDALVLQDGGQKLLQKQMGFQF 276

Query: 72  INPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLI 131
           INP++ WFPGL K+ ++++SW W +G TPKFT+++ F++    G   +L + L++  G++
Sbjct: 277 INPSEGWFPGLDKLTNDFRSWSWNFGKTPKFTVTRKFEVTAHDGKVHRLNLRLDVQDGIV 336

Query: 132 ESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEAL 175
           E V   +P  L + + F QDA ++ ++ G ++     DD+  A+
Sbjct: 337 EEVRMSLPNELASAD-FDQDASVITNLCGTRYNHEITDDIIAAI 379

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
UNIPROTKB|O46419	373	LIPT1 "Lipoyltransferase 1, mi	0.577	0.300	0.370	5.2e-13
MGI|MGI:3645211	373	Lipt1 "lipoyltransferase 1" [M	0.644	0.335	0.335	5.2e-13
UNIPROTKB|E2RPI5	381	LIPT1 "Uncharacterized protein	0.603	0.307	0.358	1.5e-12
UNIPROTKB|Q9Y234	373	LIPT1 "Lipoyltransferase 1, mi	0.737	0.383	0.345	2.4e-12
RGD|1310276	371	Lipt1 "lipoyltransferase 1" [R	0.768	0.401	0.352	8.2e-12
ZFIN|ZDB-GENE-060929-112	401	lipt1 "lipoyltransferase 1" [D	0.706	0.341	0.275	3.5e-11
UNIPROTKB|E1BVP4	373	LIPT1 "Uncharacterized protein	0.695	0.361	0.310	6.3e-11

UNIPROTKB|O46419 LIPT1 "Lipoyltransferase 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 47/127 (37%), Positives = 68/127 (53%)

Query:    10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
             +GI SNATASTPA   NL E  P ++ + +I ++  EY  +  I      +  I      
Sbjct:   198 QGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQI------DNHI------ 245

Query:    70 QTINPTDDW-FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
               INPTD+  FPG+     E Q+WEW YG TPKF++  SF +  E     ++ + +++  
Sbjct:   246 HLINPTDETVFPGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHEQSHV-EIKVFIDVKN 304

Query:   129 GLIESVC 135
             G IE VC
Sbjct:   305 GRIE-VC 310

GO:0005739 "mitochondrion" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

MGI|MGI:3645211 Lipt1 "lipoyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 48/143 (33%), Positives = 73/143 (51%)

Query:     2 RIATGASMK----GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMED 57
             R A  +S+K    GI SNAT S P+   NL E    ++ + L+ ++  EY     +    
Sbjct:   186 RTALSSSLKSPYCGIKSNATPSIPSAVKNLLERDSTLTCEVLMSAVAAEYAAHHQV---- 241

Query:    58 GGEGQIAKQRGFQTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGA 116
               +G +        INP D+  FPG+ +   E QSWEW YG TPKFT+  +F +P E  A
Sbjct:   242 --DGHV------NLINPADETMFPGINRKVKELQSWEWVYGRTPKFTVDTTFHVPYEQ-A 292

Query:   117 PGQLVISLEIVKGLIESVCFKIP 139
               ++ + +++  G IE+   K P
Sbjct:   293 HLEIQVFMDVKNGRIETCAIKAP 315

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|E2RPI5 LIPT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 47/131 (35%), Positives = 69/131 (52%)

Query:    10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
             +GI SNAT S P+   NL E  P ++ + L+ ++  EY     I      +  I      
Sbjct:   206 QGIRSNATTSIPSIVKNLLEKDPTLTCEVLMNAVAAEYAAYHQI------DNHI------ 253

Query:    70 QTINPTDDW-FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
               INPTD+  FPG+     E Q+WEW YG TPKF+I+ SF++ DE     ++ I ++I  
Sbjct:   254 NLINPTDETLFPGINNKAKELQTWEWIYGKTPKFSINTSFNVLDEQSHL-EIKIFIDIKN 312

Query:   129 GLIESVCFKIP 139
             G IE+   + P
Sbjct:   313 GRIETCNIEAP 323

GO:0005739 "mitochondrion" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

UNIPROTKB|Q9Y234 LIPT1 "Lipoyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 56/162 (34%), Positives = 83/162 (51%)

Query:    10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
             +GI SNATAS P+   NL E  P ++ + L+ ++  EY     I      +  I      
Sbjct:   198 QGIRSNATASIPSLVKNLLEKDPTLTCEVLMNAVATEYAAYHQI------DNHI------ 245

Query:    70 QTINPTDDW-FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
               INPTD+  FPG+     E Q+WEW YG TPKF+I+ SF +  E     ++ + ++I  
Sbjct:   246 HLINPTDETLFPGINSKAKELQTWEWIYGKTPKFSINTSFHVLYEQSHL-EIKVFIDIKN 304

Query:   129 GLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKF--TETAL 168
             G IE    + P   +  E  ++D +L  S+ G KF  TET +
Sbjct:   305 GRIEICNIEAPDHWLPLE--IRD-KLNSSLIGSKFCPTETTM 343

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

RGD|1310276 Lipt1 "lipoyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 62/176 (35%), Positives = 88/176 (50%)

Query:     2 RIATGASMK----GIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMED 57
             R A  +S+K    GI SNAT S P+   NL E    ++ D L+ ++  EY     I  +D
Sbjct:   186 RTALSSSLKSPYHGIKSNATPSIPSTVKNLLERDSTLTCDVLMSAVAAEYAAYHQI--DD 243

Query:    58 GGEGQIAKQRGFQTINPTDDW-FPGL-AKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHG 115
                           INP D+  FPG+ +KI+ E QSWEW YG TP+FT+   F +P  HG
Sbjct:   244 H----------VNLINPADETVFPGINSKIK-ELQSWEWVYGRTPRFTVDTMFHVP--HG 290

Query:   116 -APGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKF--TETAL 168
              A  ++ + +++  G IE+   K P   +  E  + D +L  S  G KF   ET L
Sbjct:   291 QACLEIQVFMDVKNGRIETCDIKAPDHWLPLE--IGD-KLNSSFIGSKFCPVETTL 343

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-060929-112 lipt1 "lipoyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 44/160 (27%), Positives = 82/160 (51%)

Query:    12 IISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQT 71
             I SNAT S P+P  NL EV P +    +++++  +Y        E G +  +       T
Sbjct:   232 IKSNATPSVPSPVKNLLEVDPTLDSSTIMEAIASQY------NSEFGFDSPVI------T 279

Query:    72 INPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGL 130
             ++PT +   PG+ K+  + Q+WEW YG TPKF++  +  + D +     + + +++  G 
Sbjct:   280 VDPTHEALMPGIHKMAHDLQTWEWIYGKTPKFSVCTALVVDDVN-----IKLDMDVRNGT 334

Query:   131 IESVCFKIPPALVNDEHFLQDAELLCSVQGRKF--TETAL 168
             +E    +IP   ++ E      EL+ +++G ++   ETA+
Sbjct:   335 VERCALEIPADWLSPEIV---NELISTLKGSRYCPNETAV 371

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BVP4 LIPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 49/158 (31%), Positives = 75/158 (47%)

Query:    10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
             KG+ SNAT S PA   NL E  P ++ + L+ ++  EY     I                
Sbjct:   198 KGLKSNATPSVPASVKNLFEEDPGLTCEMLLDAIAEEYATQHRI------------DHHI 245

Query:    70 QTINPTDDW-FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
               INPTD+   PG+     E Q+WEW YG TPKF++S  F++  +      + + +++  
Sbjct:   246 TLINPTDESVLPGINDKSKELQTWEWVYGKTPKFSVSTCFNMVYKDSVL-DVKVDMDVKH 304

Query:   129 GLIESVCFKIPPALVNDEHFLQDA---ELLCSVQGRKF 163
             G IE+    +P      + +L  A   EL+ S+ G KF
Sbjct:   305 GRIEACDIDLP------QQWLPPALCHELVKSLTGSKF 336


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       194   0.00076  111 3  11 22  0.49    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.26u 0.07s 18.33t   Elapsed:  00:00:04
  Total cpu time:  18.26u 0.07s 18.33t   Elapsed:  00:00:04
  Start:  Thu Aug 15 11:03:03 2013   End:  Thu Aug 15 11:03:07 2013

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	194
TIGR00545	324	TIGR00545, lipoyltrans, lipoyltransferase and lipo	0.002

>gnl|CDD|161920 TIGR00545, lipoyltrans, lipoyltransferase and lipoate-protein ligase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 84  KIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIE 132
           + +  +QSWEW +G TPKF    +F       A G   + +++ KG I 
Sbjct: 229 RAKERFQSWEWNFGKTPKF----NFKNKKRFTA-GGFELHVQVEKGKIV 272

One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus [Protein fate, Protein modification and repair]. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PRK03822	338	lplA lipoate-protein ligase A; Provisional	100.0
PRK14061	562	unknown domain/lipoate-protein ligase A fusion pro	100.0
TIGR00545	324	lipoyltrans lipoyltransferase and lipoate-protein	100.0
PF10437	86	Lip_prot_lig_C: Bacterial lipoate protein ligase C	99.76
KOG3159|consensus	336		99.67
COG0095	248	LplA Lipoate-protein ligase A [Coenzyme metabolism	99.35
PF03450	103	CO_deh_flav_C: CO dehydrogenase flavoprotein C-ter	89.34
cd06664	123	IscU_like Iron-sulfur cluster scaffold-like protei	85.5
TIGR01994	137	SUF_scaf_2 SUF system FeS assembly protein, NifU f	84.25

>PRK03822 lplA lipoate-protein ligase A; Provisional

Probab=100.00  E-value=1.5e-35  Score=256.17  Aligned_cols=164  Identities=19%  Similarity=0.266  Sum_probs=139.6

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      |.++|+|+++|+.||||+|||||||||++++|.+++++|+++|+++|.+.|+...           +.+.+  +.+++ +
T Consensus       162 l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~~~~~l~~~f~~~~~~~~-----------~~~~l--t~~e~-~  227 (338)
T PRK03822        162 LANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERV-----------EAEVI--SPDKT-P  227 (338)
T ss_pred             HHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHHHHHHHHHHHHHHhCCCC-----------Ccccc--CHHHH-H
Confidence            4689999999999999999999999999999889999999999999998753211           11223  45555 5


Q ss_pred             hHHHHH---hhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHH
Q psy8036          81 GLAKIQ---SEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAEL  154 (194)
Q Consensus        81 ~i~~~~---~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l  154 (194)
                      .+.++.   ++|+||||+||+||+|++..+.+|+|     |.++|+++|++|+|++|+|+|        ||+.   +.++
T Consensus       228 ~i~~l~~~~~ky~s~eW~yg~sP~f~~~~~~~f~~-----G~v~i~~~v~~g~I~~~~i~g--------D~~~~~~~~~l  294 (338)
T PRK03822        228 DLPGFAETFARQSSWEWNFGQAPAFSHLLDERFTW-----GGVELHFDVEKGHITRAQIFT--------DSLNPAPLEAL  294 (338)
T ss_pred             HHHHHHHHHHHhCCcchhcCCCCCccEeeeccccC-----CcEEEEEEEECCEEEEEEEEC--------CCCCcccHHHH
Confidence            555555   48999999999999999999999998     899999999999999999999        8876   5799


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHhhcCcccCCCchhhhhh
Q psy8036         155 LCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLVT  192 (194)
Q Consensus       155 ~~~L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  192 (194)
                      +++|+|++|+.++|.++|..+....+.|+ .+++||+.
T Consensus       295 ~~~L~G~~~~~~~i~~~l~~~~~~~~~~~-~~~~e~~~  331 (338)
T PRK03822        295 AGRLQGCLYRADALQQECEALIVDFPEQE-KELRELSA  331 (338)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHhhhhhhh-ccHHHHHH
Confidence            99999999999999999998843337777 77777764

>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional

Probab=100.00  E-value=9.7e-34  Score=256.24  Aligned_cols=150  Identities=19%  Similarity=0.286  Sum_probs=130.4

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      |.++|+|+++|+.||||+||||||+||++++|++++++|+++|.++|.+.|+...           +.+.+  +.+++ .
T Consensus       386 L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~it~e~f~~~L~~~f~~~~g~~~-----------~~~~L--t~~e~-~  451 (562)
T PRK14061        386 LANYLNPDKKKLAAKGITSVRSRVTNLTELLPGIPHEQVCEAITEAFFAHYGERV-----------EAEII--SPDKT-P  451 (562)
T ss_pred             HHHHhCCCchhhhhhhhhhHHhhceeHHHhCCCCCHHHHHHHHHHHHHHHcCCCC-----------ccccC--CHHHH-H
Confidence            4689999999999999999999999999999889999999999999998743211           11223  45555 4


Q ss_pred             hH---HHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHH
Q psy8036          81 GL---AKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAEL  154 (194)
Q Consensus        81 ~i---~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l  154 (194)
                      .+   .+.+++|+||||+||+||+|++..+.+|+|     |.++|+++|++|+|++|+|+|        ||+.   +.+|
T Consensus       452 ~i~~l~~~~~ky~sweW~yG~sP~f~~~~~~rf~~-----G~vei~l~V~~G~I~~~ki~g--------Df~~~~~i~~l  518 (562)
T PRK14061        452 DLPNFAETFARQSSWEWNFGQAPAFSHLLDERFSW-----GGVELHFDVEKGHITRAQVFT--------DSLNPAPLEAL  518 (562)
T ss_pred             HHHHHHHHHHHcCChhhhCCCCCCCcEEeeeeccc-----ccEEEEEEEeCCEEEEEEEEC--------CCCCcccHHHH
Confidence            44   444469999999999999999999999999     999999999999999999999        9987   5799


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHhh
Q psy8036         155 LCSVQGRKFTETALDDLKEALTS  177 (194)
Q Consensus       155 ~~~L~G~~~~~~~i~~~l~~~~~  177 (194)
                      ++.|+|++|+.++|.++|..+..
T Consensus       519 e~~L~G~~y~~~~i~~~l~~~~~  541 (562)
T PRK14061        519 AGRLQGCLYRADMLQQECEALLV  541 (562)
T ss_pred             HHHhCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999999988865

>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase

Probab=100.00  E-value=3.5e-33  Score=240.45  Aligned_cols=158  Identities=20%  Similarity=0.388  Sum_probs=138.2

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      |.++|+|+++|+.+||++||||||+||++++|.+++++|+++|+++|.+. +...           +.+.+  +++++ +
T Consensus       160 l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~~~~e~~~~~l~~~f~~~-~~~~-----------~~~~l--t~~e~-~  224 (324)
T TIGR00545       160 LAKYLNVDKTKIESKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFFTY-TERV-----------ETYIL--DENKT-P  224 (324)
T ss_pred             HHHhcCCChhhhHhhcccchhhhcccHHHhCCCCCHHHHHHHHHHHHHhh-CCCC-----------ceEec--CHHHH-H
Confidence            56899999999999999999999999999998899999999999999862 1100           12233  55666 7


Q ss_pred             hHHHHH-hhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHh
Q psy8036          81 GLAKIQ-SEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLC  156 (194)
Q Consensus        81 ~i~~~~-~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~  156 (194)
                      .++++. ++|+||||+||++|+|++..+.+|+|     |.++++++|++|+|++|+|+|        ||+.   +.+|++
T Consensus       225 ~~~~l~~~ky~s~eW~yg~sp~f~~~~~~r~~~-----G~v~i~l~v~~g~I~~~~i~g--------Df~~~~~~~~l~~  291 (324)
T TIGR00545       225 DVEKRAKERFQSWEWNFGKTPKFNFKNKKRFTA-----GGFELHVQVEKGKIVDCKFFG--------DFLSVADITPVTN  291 (324)
T ss_pred             HHHHHHHHhcCCccccCCCCCCCceeeeEecCC-----CcEEEEEEEeCCEEEEEEEEC--------CCCCcccHHHHHH
Confidence            888877 59999999999999999999999998     899999999999999999999        9987   579999


Q ss_pred             hcCCCCCCHHHHHHHHHHHh-hcCcccCC-Cchh
Q psy8036         157 SVQGRKFTETALDDLKEALT-SRGQTYLG-TSLD  188 (194)
Q Consensus       157 ~L~G~~~~~~~i~~~l~~~~-~~~~~~~~-~~~~  188 (194)
                      +|+|++|+.++|.++|..++ .  ..||+ .+++
T Consensus       292 ~L~G~~~~~~~i~~~l~~~~~~--~~~~~~~~~~  323 (324)
T TIGR00545       292 RLIGQKYDYDTFAKELENLDVF--KEYFGELTPE  323 (324)
T ss_pred             HhCCCccCHHHHHHHHHhhhhh--hhhhccCCcC
Confidence            99999999999999999998 7  78885 4544

One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.

>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase

Probab=99.76  E-value=4.4e-18  Score=119.98  Aligned_cols=80  Identities=23%  Similarity=0.443  Sum_probs=73.6

Q ss_pred             CCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHhhcCCCCCCHHHHHHHHHH
Q psy8036          98 STPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLCSVQGRKFTETALDDLKEA  174 (194)
Q Consensus        98 ktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~~L~G~~~~~~~i~~~l~~  174 (194)
                      |||+|+++.+.||+|     |.|+|+++|++|+|++|+|+|        ||+.   +.+|+++|+|++|+.++|.++|+.
T Consensus         1 ksP~f~~~~~~rf~~-----G~v~v~~~V~~G~I~~i~i~g--------Df~~~~~i~~le~~L~G~~~~~~~i~~~l~~   67 (86)
T PF10437_consen    1 KSPEFTFSKERRFPW-----GTVEVHLNVKNGIIKDIKIYG--------DFFGPEDIEELEEALIGCPYDREAIKEALNS   67 (86)
T ss_dssp             TS-CESEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------CBS-CCCHHHHHHHHTTCBSSHHHHHHHHHH
T ss_pred             CcCCCcEeeeeEcCC-----ceEEEEEEEECCEEEEEEEEC--------CCCCchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            799999999999999     999999999999999999999        9987   689999999999999999999999


Q ss_pred             HhhcCcccCC-Cchhhhhh
Q psy8036         175 LTSRGQTYLG-TSLDRLVT  192 (194)
Q Consensus       175 ~~~~~~~~~~-~~~~~~~~  192 (194)
                      ++.  ..|++ .+.+||+.
T Consensus        68 ~~~--~~~~~~~~~~el~~   84 (86)
T PF10437_consen   68 VDL--EDYFGNISVEELIE   84 (86)
T ss_dssp             CHG--GGTCCTHHHHHHHH
T ss_pred             hCH--hhccccCCHHHHHH
Confidence            999  99996 58888875

There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.

>KOG3159|consensus

Probab=99.67  E-value=4e-17  Score=136.64  Aligned_cols=148  Identities=28%  Similarity=0.417  Sum_probs=113.4

Q ss_pred             CccccCCCcccccccccccccc-ccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCc-
Q psy8036           1 MRIATGASMKGIISNATASTPA-PTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDW-   78 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrs-rVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~-   78 (194)
                      |+.+|+++...+.|+++.|||| ||.|+.+-.+.++.+.++-++..+|.+++.   +++         ++..+++.+++ 
T Consensus       169 ls~lL~sp~~~~~s~at~sv~sp~vk~lie~~~~v~~~q~~~av~~~y~~t~~---~d~---------~i~svn~~e~~~  236 (336)
T KOG3159|consen  169 LSELLKSPRVNIRSKATSSVRSPRVKNLIEKDDFVNVEQSAVAVQEEYKKTFK---EDG---------EIKSVNPTEELK  236 (336)
T ss_pred             HHhhccCCCCCccccccccccchhhhhhhhhcCcccHhHHHHHHHHHHHHHhc---ccC---------Ccceeccccccc
Confidence            5678999988899999999999 899999877779999999999999998621   122         34566677765 


Q ss_pred             -hhhHHHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhh
Q psy8036          79 -FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCS  157 (194)
Q Consensus        79 -~~~i~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~  157 (194)
                       .++|.+...+|+||||+||+||+|++..+..  .     -.+++.++|++|.|++|.|..|..     +  +..-+-.-
T Consensus       237 ~~~~I~~~~~elqswdWiygktPkF~~~~~~~--~-----l~~~~~i~v~~g~i~~c~i~~P~~-----~--~~~~v~~~  302 (336)
T KOG3159|consen  237 TNPEITKAENELQSWDWIYGKTPKFSVKIEDK--H-----LTLKLSIDVEKGMIEDCDIQTPQP-----N--QLELVGTP  302 (336)
T ss_pred             cCHhHHHHHHHhhhhhhhcCCCCceEEEeecc--C-----ceeeeeeEeecCceEEeccCCCCc-----c--hhcccccc
Confidence             3689999999999999999999999955432  1     378899999999999999998743     2  11122355


Q ss_pred             cCCCCCCHHHHHHHHHH
Q psy8036         158 VQGRKFTETALDDLKEA  174 (194)
Q Consensus       158 L~G~~~~~~~i~~~l~~  174 (194)
                      |+|.+|..+.....|.+
T Consensus       303 l~g~~~~~~~~n~~l~~  319 (336)
T KOG3159|consen  303 LKGFLYNIDTENTILGA  319 (336)
T ss_pred             ceeeeecCCccceeeee
Confidence            88888865544444433

>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]

Probab=99.35  E-value=3.2e-13  Score=112.61  Aligned_cols=83  Identities=18%  Similarity=0.433  Sum_probs=67.7

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      |.++|+++++|+++||++|+|+||+||.+. .++++++|++++.++|.+.++...           +.+++  +.+++ .
T Consensus       165 l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~-~~~~~~e~~~~l~~~f~~~~~~~~-----------~~~~l--t~~e~-~  229 (248)
T COG0095         165 LARVLRVPKEKIKSKGIKSVRERVANLEEL-LKISVEEFLEALLEAFFKVLGVEL-----------EEYEL--TPEEL-E  229 (248)
T ss_pred             HHHHhCCChhhhhhcccccHHHhCcchhhc-cCCCHHHHHHHHHHHHHHhhCCCc-----------cccCC--CHHHH-H
Confidence            468999999999999999999999999998 679999999999999998632111           22233  55666 6


Q ss_pred             hHHHHH-hhhCCcceecCC
Q psy8036          81 GLAKIQ-SEYQSWEWRYGS   98 (194)
Q Consensus        81 ~i~~~~-~k~~sweW~yGk   98 (194)
                      .+.+++ ++|++|+|+||+
T Consensus       230 ~~~~~~~~~~~~~~w~~~~  248 (248)
T COG0095         230 LAEKLAEEKYSSWEWNFGK  248 (248)
T ss_pred             HHHHHHHHHhcchhhhccC
Confidence            777777 599999999996

>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]

Probab=89.34  E-value=2.9  Score=29.64  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             eEEEEEEEeCC-eEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036         119 QLVISLEIVKG-LIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT  176 (194)
Q Consensus       119 ~i~v~l~v~~G-~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~  176 (194)
                      .+-+.+.+++| +|+++++.-  |-+.+ -..-..++++.|.|.+.+.+.++++...+.
T Consensus        17 ~~a~~~~~~~~~~i~~~ria~--g~v~~-~p~r~~~~E~~L~g~~~~~~~~~~~~~~~~   72 (103)
T PF03450_consen   17 NVAVLVSVDDDGRIEDARIAV--GGVAP-TPVRAEEVEAALIGKPLSEETLEEAAEAVS   72 (103)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE--ESSSS-STEE-HHHHHHTTTSBSSHHHHHHHHHHHH
T ss_pred             hhhheEEEecCceEEEEEEEE--ecccc-ceeehHHHHHHHhhcchhhhhHHHHHHHHH
Confidence            45566777766 999999984  22222 111146899999999999999999887664

The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....

>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins

Probab=85.50  E-value=10  Score=27.73  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             ecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCCCCCCHHHHHH
Q psy8036          95 RYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQGRKFTETALDD  170 (194)
Q Consensus        95 ~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G~~~~~~~i~~  170 (194)
                      ++|.-+.++......-|. +|  ..+++.+.+++|+|+++.|.+-       -+..    ..-+.+.+.|.  +-+++..
T Consensus        15 ~~g~l~~~~~~~~~~n~~-CG--D~v~l~l~i~~~~I~d~~f~~~-------GC~i~~Asas~~~~~~~Gk--~~~ea~~   82 (123)
T cd06664          15 NVGRLEDADGTGEVGNPL-CG--DEITLYLKVEDGRITDAKFQGF-------GCAISIASASLLTELIKGK--TLDEALK   82 (123)
T ss_pred             CCCCCCCCCeEEEcCCCC-CC--ceEEEEEEEcCCEEEEEEEEec-------CcHHHHHHHHHHHHHHcCC--cHHHHHH
Confidence            556666666655555442 12  5899999999999999999971       2221    23455888898  4444444


Q ss_pred             HHH
Q psy8036         171 LKE  173 (194)
Q Consensus       171 ~l~  173 (194)
                      ++.
T Consensus        83 i~~   85 (123)
T cd06664          83 LLN   85 (123)
T ss_pred             HHH
Confidence            443

IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.

>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family

Probab=84.25  E-value=3.3  Score=31.36  Aligned_cols=67  Identities=13%  Similarity=0.235  Sum_probs=43.5

Q ss_pred             hhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCCCC
Q psy8036          87 SEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQGRK  162 (194)
Q Consensus        87 ~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G~~  162 (194)
                      +.|+.+. ++|..+.++......-|.. |  ..|.+.+.|++|+|+++.|.+.       -+..    ..-+.+.++|..
T Consensus        11 eh~~~p~-n~g~l~~~~~~~~~~np~C-G--D~i~l~l~v~~~~I~d~~f~~~-------GCais~Asas~~~e~i~Gk~   79 (137)
T TIGR01994        11 DHYKNPR-HRGKLEDATVQERGHNPTC-G--DEITLTVKLEGDRIEDIAFEGE-------GCSISQASASMMTELIKGKT   79 (137)
T ss_pred             HHHhCCC-CCCCCCCCCeeEEeCCCCC-C--cEEEEEEEEcCCeEEEEEEEec-------ccHHHHHHHHHHHHHHcCCC
Confidence            3444442 5787777765554433321 2  4899999999999999999972       2321    134458888987


Q ss_pred             CC
Q psy8036         163 FT  164 (194)
Q Consensus       163 ~~  164 (194)
                      .+
T Consensus        80 ~~   81 (137)
T TIGR01994        80 VE   81 (137)
T ss_pred             HH
Confidence            65

Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
2e5a_A	347	Crystal Structure Of Bovine Lipoyltransferase In Co		6e-14

>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex With Lipoyl-Amp Length = 347

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +GI SNATASTPA   NL E  P ++ + +I ++  EY  +  I                
Sbjct: 172 QGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQI------------DNHI 219
Query: 70  QTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
             INPTD+  FPG+     E Q+WEW YG TPKF++  SF +  E  +  ++ + +++  
Sbjct: 220 HLINPTDETVFPGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHEQ-SHVEIKVFIDVKN 278
Query: 129 GLIESVCFKIP 139
           G IE    + P
Sbjct: 279 GRIEVCNIEAP 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
2e5a_A	347	Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ;	3e-23
3a7r_A	337	Lipoate-protein ligase A; adenylate-forming enzyme	8e-18
1vqz_A	341	Lipoate-protein ligase, putative; class II AARS an	5e-15
2c8m_A	262	Lipoate-protein ligase A; lipoylation; HET: LPA; 1	2e-11

>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Length = 347

 Score = 93.9 bits (233), Expect = 3e-23
 Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 19/171 (11%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +GI SNATASTPA   NL E  P ++ + +I ++  EY  +  I                
Sbjct: 172 QGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH------------I 219

Query: 70  QTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
             INPTD+  FPG+     E Q+WEW YG TPKF++  SF +  E     ++ + +++  
Sbjct: 220 HLINPTDETVFPGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHEQSH-VEIKVFIDVKN 278

Query: 129 GLIESVCFKIPPALVNDEHFLQDAELLCSV-QGRKFTETALDDLKEALTSR 178
           G IE    + P    +    L+  + L S   G KF+      L   L   
Sbjct: 279 GRIEVCNIEAP----DHWLPLEICDQLNSSLIGSKFSPIETTVLTSILHRT 325

>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Length = 337

 Score = 78.7 bits (194), Expect = 8e-18
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 28/168 (16%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           K + +    S  +   NL E+ P ++ +++ +++   +       +E             
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEA------------ 217

Query: 70  QTINPTD-DWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
           + I+P      P  A+  +   SWEW +G  P F+              G + +  ++ K
Sbjct: 218 EIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTW-----GGVELHFDVEK 272

Query: 129 GLIESVCFKIPPALVNDEHFLQDAELLCSV-QGRKFTETALDDLKEAL 175
           G I             D       E L    QG  +     D L++  
Sbjct: 273 GHITRAQV------FTDSLNPAPLEALAGRLQGCLYRA---DMLQQEC 311

>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Length = 341

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 26/174 (14%), Positives = 65/174 (37%), Gaps = 38/174 (21%)

Query: 10  KGIISNATASTPAPTLNL-QEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRG 68
               S    S  A   N+  E+  ++++++    L  EY++ +   M +           
Sbjct: 179 DKFESKGVKSVRARVTNIINELPKKITVEKFRDLL-LEYMKKEYPEMTEY---------- 227

Query: 69  FQTINPTDDWFPGLAKI-QSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIV 127
                 +++    + +I  +++ +W+W YG +P+F + +           G++ +   + 
Sbjct: 228 ----VFSEEELAEINRIKDTKFGTWDWNYGKSPEFNVRRGIKFTS-----GKVEVFANVT 278

Query: 128 KGLIESVCFK---IPPALVND-EHFLQDAELLCSVQGRKFTETALDDLKEALTS 177
           +  I+ +           V   E  L         +G K+     +D+ +AL +
Sbjct: 279 ESKIQDIKIYGDFFGIEDVAAVEDVL---------RGVKYER---EDVLKALKT 320

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Length = 262

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 16/98 (16%)

Query: 8   SMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQR 67
             +        ST     N+ +   +VS+D +  +L   +  T  I   +          
Sbjct: 180 PDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFRED--------- 229

Query: 68  GFQTINPTDDWFPGLAKIQSE-YQSWEWRYGSTPKFTI 104
                  T+       ++  + Y + EW  G   K  +
Sbjct: 230 -----TITEKEESLARELFDKKYSTEEWNMGLLRKEVV 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1vqz_A	341	Lipoate-protein ligase, putative; class II AARS an	99.98
3a7r_A	337	Lipoate-protein ligase A; adenylate-forming enzyme	99.98
2e5a_A	347	Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ;	99.96
2c8m_A	262	Lipoate-protein ligase A; lipoylation; HET: LPA; 1	99.53
3r07_C	91	Putative lipoate-protein ligase A subunit 2; adeny	99.37
2p5i_A	288	BH3822 protein; PFAM03099, structural genomics, PS	97.66
2p0l_A	288	Lipoate-protein ligase A; PFAM, lopoate-protein li	96.69
1w66_A	232	Lipoyltransferase; lipoate-protein ligase B, lipoi	93.28
2qq4_A	138	Iron-sulfur cluster biosynthesis protein ISCU; zin	90.17
1su0_B	159	NIFU like protein ISCU; structural genomics, BSGC	81.82
2z7e_A	157	ISCU protein, NIFU-like protein; iron-sulfur clust	81.48
4eb5_C	153	NIFU protein (NIFU-1); scaffold, transferase-metal	81.12

>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3

Probab=99.98  E-value=1.1e-32  Score=237.80  Aligned_cols=161  Identities=14%  Similarity=0.307  Sum_probs=142.2

Q ss_pred             ccccCCCccccccccccccccccccccccCC-CCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           2 RIATGASMKGIISNATASTPAPTLNLQEVCP-EVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~-~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      .++|++++.|+.+||++|||+|||||+++++ .+++++|+++|.++|.+.++..        +    .+.+  +++++ +
T Consensus       171 ~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~~~--------~----~~~l--t~~e~-~  235 (341)
T 1vqz_A          171 ANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM--------T----EYVF--SEEEL-A  235 (341)
T ss_dssp             HHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC--------E----ECCC--CHHHH-H
T ss_pred             HHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcCCC--------C----CCCC--CHHHH-H
Confidence            4689999999999999999999999999987 5999999999999999873211        0    1223  55666 8


Q ss_pred             hHHHHHh-hhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHh
Q psy8036          81 GLAKIQS-EYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLC  156 (194)
Q Consensus        81 ~i~~~~~-k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~  156 (194)
                      .++++++ +|+||||+||++|+|++....||+|     |.++++++|++|+|++|+|+|        ||+.   +.+|++
T Consensus       236 ~i~~l~~~ky~s~eW~~g~~P~f~~~~~~r~~~-----G~v~~~~~v~~g~I~~~~i~g--------Df~~~~~~~~l~~  302 (341)
T 1vqz_A          236 EINRIKDTKFGTWDWNYGKSPEFNVRRGIKFTS-----GKVEVFANVTESKIQDIKIYG--------DFFGIEDVAAVED  302 (341)
T ss_dssp             HHHHHHHHTTTCHHHHTCCCCCCSEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------SCCCSSCTHHHHH
T ss_pred             HHHHHHHHhcCCcccccCCCCCceEEeeecccC-----CcEEEEEEEeCCEEEEEEEEC--------CcCCcchHHHHHH
Confidence            8999986 9999999999999999999999999     999999999999999999999        8887   478999


Q ss_pred             hcCCCCCCHHHHHHHHHHHhhcCcccCC-Cchhhhhh
Q psy8036         157 SVQGRKFTETALDDLKEALTSRGQTYLG-TSLDRLVT  192 (194)
Q Consensus       157 ~L~G~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~  192 (194)
                      .|+|++|++++|.++|+.++.  ..|++ .++++|++
T Consensus       303 ~L~G~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~  337 (341)
T 1vqz_A          303 VLRGVKYEREDVLKALKTIDI--TRYFAGISREEIAE  337 (341)
T ss_dssp             HHTTCBSSHHHHHHHHTTSCG--GGTSTTCCHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHhcc--cccccCCCHHHHHH
Confidence            999999999999999999988  78885 69999875

>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*

Probab=99.98  E-value=1.4e-32  Score=236.81  Aligned_cols=162  Identities=18%  Similarity=0.270  Sum_probs=140.7

Q ss_pred             ccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036           2 RIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG   81 (194)
Q Consensus         2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~   81 (194)
                      .++|++++.|+.+|||+||++|||||+++++.+++++|+++|.++|.+.++...           ..+.+  +++++ +.
T Consensus       162 ~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~~~~-----------~~~~l--~~~e~-~~  227 (337)
T 3a7r_A          162 ANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERV-----------EAEII--SPNKT-PD  227 (337)
T ss_dssp             HHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCC-----------CCEEE--CTTSC-CC
T ss_pred             HHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcCCCC-----------ceecC--CHHHH-HH
Confidence            468999999999999999999999999999889999999999999998743211           22345  55565 55


Q ss_pred             HHHHHhhh---CCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHH
Q psy8036          82 LAKIQSEY---QSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELL  155 (194)
Q Consensus        82 i~~~~~k~---~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~  155 (194)
                      +.++.++|   +||||+||+||+|++....+|+|     |.++++++|++|+|++|+|+|        ||+.   +.+|+
T Consensus       228 ~~~l~~ky~~l~s~eW~~g~~p~f~~~~~~r~~~-----g~v~~~~~v~~g~I~~~~i~g--------D~~~~~~~~~l~  294 (337)
T 3a7r_A          228 LPNFAETFARQSSWEWNFGQAPAFSHLLDERFTW-----GGVELHFDVEKGHITRAQVFT--------DSLNPAPLEALA  294 (337)
T ss_dssp             CTTHHHHHHHHHSHHHHTTTSCCEEEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------CCSCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccccCCCCCceEEEeeccCC-----CcEEEEEEEcCCEEEEEEEEC--------CCCCchHHHHHH
Confidence            66666667   99999999999999999999999     999999999999999999999        8887   47899


Q ss_pred             hhcCCCCCCHHHHHHHHHHHhhcCcccCC-Cchhhhhh
Q psy8036         156 CSVQGRKFTETALDDLKEALTSRGQTYLG-TSLDRLVT  192 (194)
Q Consensus       156 ~~L~G~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~  192 (194)
                      +.|+|++|++++|.+++..++.  ..|++ .+.++|++
T Consensus       295 ~~L~G~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~  330 (337)
T 3a7r_A          295 GRLQGCLYRADMLQQECEALLV--DFPEQEKELRELSA  330 (337)
T ss_dssp             HHTTTCBSSHHHHHHHHHHTTT--TCGGGHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHhhcc--ccccccCCHHHHHH
Confidence            9999999999999999999987  78886 58888764

>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A

Probab=99.96  E-value=1.8e-30  Score=224.48  Aligned_cols=167  Identities=29%  Similarity=0.441  Sum_probs=127.8

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCC-Cch
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTD-DWF   79 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-e~~   79 (194)
                      |.++|++++.|+.+|||+||++||+||+++.+.+++++|+++|.++|.+.++...+          .. ....+++ ++ 
T Consensus       163 l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~~~~~----------~~-~~~~~~~~~~-  230 (347)
T 2e5a_A          163 LSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH----------IH-LINPTDETVF-  230 (347)
T ss_dssp             HHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCC----------CE-EECTTCTTTS-
T ss_pred             HHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhCCCCc----------ce-ecCCCchHHH-
Confidence            35789999999999999999999999999988899999999999999987532111          00 1112444 56 


Q ss_pred             hhHHHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCc---eEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHH
Q psy8036          80 PGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPG---QLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAE  153 (194)
Q Consensus        80 ~~i~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G---~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~  153 (194)
                      +.|.+++++|+||||+||++|+|++....+|++.    |   .++++++|++|+|++|+|+++ +     ||+.   +.+
T Consensus       231 ~~i~~l~~~~~s~eW~~g~~p~f~~~~~~~~~~~----g~~~~v~~~~~v~~g~I~~~~i~~~-~-----d~~~~~~~~~  300 (347)
T 2e5a_A          231 PGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHE----QSHVEIKVFIDVKNGRIEVCNIEAP-D-----HWLPLEICDQ  300 (347)
T ss_dssp             TTHHHHHHHHHSHHHHTTTCCCEEEEEEEEEEC------CEEEEEEEEEEETTEEEEEEEECC-T-----TTSCHHHHHH
T ss_pred             HHHHHHHHHhCCccccCCCCCCceEEEeeeecCC----CCceEEEEEEEEcCCEEEEEEEEec-C-----CcCChhHHHH
Confidence            8999999999999999999999999999998852    5   899999999999999999942 1     8776   478


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHhhcCcccCCCchhhhh
Q psy8036         154 LLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLV  191 (194)
Q Consensus       154 l~~~L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  191 (194)
                      |++.|+|++|+++++.++++.+..  ..+.....++|.
T Consensus       301 l~~~L~G~~~~~~~~~~~~~~~~~--~~~~~~~~~el~  336 (347)
T 2e5a_A          301 LNSSLIGSKFSPIETTVLTSILHR--TYPGDDELHSKW  336 (347)
T ss_dssp             HHHHHTTSBSCSSTTTC--------------CHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHhh--hCchhhhHHHHH
Confidence            999999999999999999998876  333355556654

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A

Probab=99.53  E-value=1.1e-15  Score=126.98  Aligned_cols=85  Identities=18%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             ccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036           2 RIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG   81 (194)
Q Consensus         2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~   81 (194)
                      .++|++++.++.+||++|+++|||||++++ .+++++|+++|.++|.+.++...           ..+.+  +++++ +.
T Consensus       174 ~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~~~~~~~~-----------~~~~l--t~~e~-~~  238 (262)
T 2c8m_A          174 SAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFSETLHIDF-----------REDTI--TEKEE-SL  238 (262)
T ss_dssp             HHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHHHHHTCEE-----------EECCC--CHHHH-HH
T ss_pred             HHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHHHHhCCCc-----------eecCC--CHHHH-HH
Confidence            467899999999999999999999999988 79999999999999998743211           11223  45566 88


Q ss_pred             HHHHHh-hhCCcceecCCCCC
Q psy8036          82 LAKIQS-EYQSWEWRYGSTPK  101 (194)
Q Consensus        82 i~~~~~-k~~sweW~yGktP~  101 (194)
                      ++++++ ||+||||+||++|+
T Consensus       239 ~~~l~~~ky~~~~W~~g~~~~  259 (262)
T 2c8m_A          239 ARELFDKKYSTEEWNMGLLRK  259 (262)
T ss_dssp             HHHHHHHTTTSHHHHHCC---
T ss_pred             HHHHHHhhcCCccccCCCCCc
Confidence            999986 99999999999986

>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}

Probab=99.37  E-value=2.9e-12  Score=90.28  Aligned_cols=74  Identities=14%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             eeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc-----HHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q psy8036         104 ISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ-----DAELLCSVQGRKFTETALDDLKEALTSR  178 (194)
Q Consensus       104 ~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~-----~~~l~~~L~G~~~~~~~i~~~l~~~~~~  178 (194)
                      ++...||||     |.++++++|++|+|++|+|+|        |||.     +.+|+++|+|+||+  +|.++|+++...
T Consensus         8 ~~~~~kf~~-----G~v~v~l~v~~G~I~~vki~G--------DFf~~p~~~i~~le~~L~G~~~~--~i~~~l~~~~~~   72 (91)
T 3r07_C            8 YSKNWKAKK-----GLIRVTLDLDGNRIKDIHISG--------DFFMFPEDSINRLEDMLRGSSIE--KINDIIRDFYNQ   72 (91)
T ss_dssp             EEEEEECSS-----CEEEEEEEEETTEEEEEEEEE--------EBCCBSTTHHHHHHHHHTTSBTT--SHHHHHHHHHTT
T ss_pred             EEEEEEcCC-----cEEEEEEEEcCCEEEEEEEEc--------ccCCCcchhHHHHHHHHCCCCHH--HHHHHHHhhhcc
Confidence            567889999     999999999999999999999        9985     47999999999999  899999887543


Q ss_pred             CcccCCCchhhhhh
Q psy8036         179 GQTYLGTSLDRLVT  192 (194)
Q Consensus       179 ~~~~~~~~~~~~~~  192 (194)
                      +..++|.+++++++
T Consensus        73 ~~~~~g~~~edi~~   86 (91)
T 3r07_C           73 GVITPGVEPEDFIQ   86 (91)
T ss_dssp             TCBCTTCCTTHHHH
T ss_pred             CceEcCCCHHHHHH
Confidence            34444889999875

>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3

Probab=97.66  E-value=1e-05  Score=67.71  Aligned_cols=70  Identities=10%  Similarity=0.092  Sum_probs=52.6

Q ss_pred             cccCCCccccccccccccccccccccccCC-CCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036           3 IATGASMKGIISNATASTPAPTLNLQEVCP-EVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG   81 (194)
Q Consensus         3 ~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~-~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~   81 (194)
                      ++|+|++.|+.+||+  ++++||||+++++ .+++++|+++|.++|.+.+. ..           ..+.+  +++|+ +.
T Consensus       200 ~~l~~~~~ki~~~gi--~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~-~~-----------~~~~l--t~~e~-~~  262 (288)
T 2p5i_A          200 KAVAGQPTKFVYPRI--KPETMASLSELLGQPHNVSDVLLKALMTLQQHGA-SL-----------LTESL--SADEW-LL  262 (288)
T ss_dssp             HHHTTSCCSSCCCCC--CGGGBCCHHHHHTSCCCHHHHHHHHHHHHHHTTC-CC-----------EECCC--CHHHH-HH
T ss_pred             HhhcCcccccccccc--chhhceeHHHHcCCCCCHHHHHHHHHHHHHHhCC-Cc-----------eecCC--CHHHH-HH
Confidence            357899999999999  6999999999876 49999999999999987421 10           11223  55666 77


Q ss_pred             HHHHHhhh
Q psy8036          82 LAKIQSEY   89 (194)
Q Consensus        82 i~~~~~k~   89 (194)
                      ++++.++|
T Consensus       263 ~~~~~~~~  270 (288)
T 2p5i_A          263 YEQHFARI  270 (288)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3

Probab=96.69  E-value=0.00085  Score=55.93  Aligned_cols=45  Identities=13%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             ccCCCccccccccccccccccccccccCCC-CCHHHHHHHHHHHHHhh
Q psy8036           4 ATGASMKGIISNATASTPAPTLNLQEVCPE-VSMDRLIKSLGYEYLRT   50 (194)
Q Consensus         4 ~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~-i~~e~f~~~l~~~f~~~   50 (194)
                      +|+|++.|+.++|+  ++++||||+++++. +++++|+++|.++|.+.
T Consensus       200 ~l~~~~~k~~~~gi--~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~  245 (288)
T 2p0l_A          200 GLGDTGSPIAYPNV--DPEIMANLSDLLDCPMTVEDVIDRMLISLKQV  245 (288)
T ss_dssp             HHTTTCCSSCCCCC--CTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hcCCcccccccccc--chhheeeHHHHcCCCCCHHHHHHHHHHHHHHh
Confidence            46888899999999  49999999998874 99999999999999976

>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3

Probab=93.28  E-value=0.055  Score=43.63  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=36.6

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhc
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTK   51 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~   51 (194)
                      |..++++.+.||.+|||.|++++      +...+++++++++|.++|.+.+
T Consensus       169 L~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~  213 (232)
T 1w66_A          169 LAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAAL  213 (232)
T ss_dssp             CGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHh
Confidence            34567777889999999999854      2346899999999999999874

>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}

Probab=90.17  E-value=0.95  Score=33.33  Aligned_cols=68  Identities=21%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             HhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCCC
Q psy8036          86 QSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQGR  161 (194)
Q Consensus        86 ~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G~  161 (194)
                      .+.|+.+. ++|.-+.++......-|.. |  ..+++.+.|++|+|++++|.+-       -+..    ..-+.+.++|.
T Consensus        13 ldh~~nP~-n~G~l~~~~~~~~~~np~C-G--D~i~l~l~v~~~~I~d~~f~~~-------GCais~ASaS~~te~i~Gk   81 (138)
T 2qq4_A           13 LDHYQSPR-NFGVLPQATKQAGGMNPSC-G--DQVEVMVLLEGDTIADIRFQGQ-------GCAISTASASLMTEAVKGK   81 (138)
T ss_dssp             HHHHHSCT-TBSCCTTCSEEEEEECTTT-C--CEEEEEEEEETTEEEEEEEEEE-------CCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhCCC-CCCCCCCCCeEEeeCCCCC-C--CEEEEEEEECCCEEEEEEEEec-------CCHHHHHHHHHHHHHHcCC
Confidence            34555555 6788777766555444432 2  4899999999999999999971       2221    12345788898


Q ss_pred             CCC
Q psy8036         162 KFT  164 (194)
Q Consensus       162 ~~~  164 (194)
                      ..+
T Consensus        82 t~~   84 (138)
T 2qq4_A           82 KVA   84 (138)
T ss_dssp             BHH
T ss_pred             cHH
Confidence            765

>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2

Probab=81.82  E-value=2.8  Score=31.51  Aligned_cols=68  Identities=12%  Similarity=0.132  Sum_probs=42.7

Q ss_pred             HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCC
Q psy8036          85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQG  160 (194)
Q Consensus        85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G  160 (194)
                      +.+.|+.+. ++|.- .++......-|.. |  ..+++.+.|++|+|++++|.+-       -+..    ..-+.+.++|
T Consensus        14 Ildh~~nP~-n~G~l-~~~~~~~~~np~C-G--D~i~l~lkv~~g~I~d~~F~~~-------GCais~ASaS~mte~v~G   81 (159)
T 1su0_B           14 VADHSKRPH-HHGQL-DGVEAVQLNNPTC-G--DVISLTVKFDEDKIEDIAFAGN-------GCTISTASSSMMTDAVIG   81 (159)
T ss_dssp             HHHHHHSCS-SBSCC-TTCCCEEEECSSS-C--CEEEEEEEESSSSEEEEEEEEE-------CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCC-CCCCC-CCCeEEeecCCCC-C--CEEEEEEEECCCEEEEEEEEec-------CCHHHHHHHHHHHHHHcC
Confidence            345555555 56775 5554444333322 2  4899999999999999999971       2221    1234477888


Q ss_pred             CCCC
Q psy8036         161 RKFT  164 (194)
Q Consensus       161 ~~~~  164 (194)
                      ...+
T Consensus        82 kt~~   85 (159)
T 1su0_B           82 KSKE   85 (159)
T ss_dssp             CCHH
T ss_pred             CcHH
Confidence            8765

>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}

Probab=81.48  E-value=3.5  Score=30.97  Aligned_cols=50  Identities=16%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEE--eCCeEEEEEEEc
Q psy8036          85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEI--VKGLIESVCFKI  138 (194)
Q Consensus        85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v--~~G~I~~i~i~~  138 (194)
                      +.+.|..+. ++|.-+.++......-|.. |  ..+++.+.|  ++|+|++++|.+
T Consensus         9 Ildh~~nPr-n~G~l~~~d~~~~~~np~C-G--D~i~l~lkvd~~~g~I~d~~F~~   60 (157)
T 2z7e_A            9 VLDHFLNPR-NVGVLEDANGVGQCGNPAC-G--AAMLFTIKVNPENDVIEDVRFKT   60 (157)
T ss_dssp             HHHHHHSCS-SBSCCTTCSEEEEEEETTT-T--EEEEEEEEECTTTCBEEEEEEEE
T ss_pred             HHHHHhCCC-CCCCCCCCCeEEEeCCCCC-C--CEEEEEEEEecCCCeEEEEEEEe
Confidence            345566555 7888777765555443422 1  489999999  789999999997

>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*

Probab=81.12  E-value=3.4  Score=30.97  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             ecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEc
Q psy8036          95 RYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKI  138 (194)
Q Consensus        95 ~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~  138 (194)
                      ++|.-+.++......-|.. |  ..+++.+.|++|+|++++|.+
T Consensus        15 n~G~l~~~d~~~~~~nP~C-G--D~i~l~lkv~d~~I~D~~F~g   55 (153)
T 4eb5_C           15 NVGKIEDADGVGTVGNPVC-G--DLMTIYIKVKDNRIEDIKFQT   55 (153)
T ss_dssp             SBSCCSSCSEEEEEECTTT-C--CEEEEEEEESSSBEEEEEEEE
T ss_pred             CCCCCCCCCeEEEeCCCCC-C--CEEEEEEEecCCeEEEEEEEE
Confidence            4676666665555554521 1  489999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1x2ga2	246	d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do	4e-08
d2c8ma1	256	d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther	1e-04
d1vqza2	241	d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te	0.001

>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Two-domain LplA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           K + +    S  +   NL E+ P ++ +++ +++   +       +E             
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVE------------A 217

Query: 70  QTINPTD-DWFPGLAKIQSEYQSWEWRYG 97
           + I+P      P  A+  +   SWEW +G
Sbjct: 218 EIISPNKTPDLPNFAETFARQSSWEWNFG 246

>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 16/89 (17%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +        ST     N+ +    VS+D +  +L   +  T  I   +            
Sbjct: 182 EKFRDKIAKSTRERVANVTDFVD-VSIDEVRNALIRGFSETLHIDFREDT---------- 230

Query: 70  QTINPTDDWFPGLAKIQSE-YQSWEWRYG 97
                T+       ++  + Y + EW  G
Sbjct: 231 ----ITEKEESLARELFDKKYSTEEWNMG 255

>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 10  KGIISNATASTPAPTLNL-QEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRG 68
               S    S  A   N+  E+  ++++++    L  EY++ +   M +           
Sbjct: 167 DKFESKGVKSVRARVTNIINELPKKITVEKFRDLL-LEYMKKEYPEMTEY---------- 215

Query: 69  FQTINPTDDWFPGLAKI-QSEYQSWEWRYG 97
                 +++    + +I  +++ +W+W YG
Sbjct: 216 ----VFSEEELAEINRIKDTKFGTWDWNYG 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1vqza1	88	LplA-like protein SP1160, C-terminal domain {Strep	99.79
d1x2ga1	91	Two-domain LplA, C-terminal domain {Escherichia co	99.7
d1x2ga2	246	Two-domain LplA, N-terminal domain {Escherichia co	99.44
d2c8ma1	256	Lipoate-protein ligase A {Thermoplasma acidophilum	99.36
d1vqza2	241	LplA-like protein SP1160, N-terminal domain {Strep	99.34
d2p5ia1	265	Hypothetical protein BH3822 {Bacillus halodurans [	96.35
d2p0la1	269	Lipoate-protein ligase A {Streptococcus agalactiae	95.69
d1t3qc1	109	Quinoline 2-oxidoreductase medium subunit QorM {Ps	92.61
d1ffvc1	110	Carbon monoxide (CO) dehydrogenase flavoprotein, C	91.0
d1jroa3	117	Xanthine dehydrogenase chain A, domain 4 {Rhodobac	89.75
d1n62c1	109	Carbon monoxide (CO) dehydrogenase flavoprotein, C	89.1
d1su0b_	136	IscU homolog SPy0289 {Streptococcus pyogenes [TaxI	86.17
d1v97a4	114	Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [	84.19

>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SP1160 C-terminal domain-like
domain: LplA-like protein SP1160, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=1e-19  Score=126.24  Aligned_cols=80  Identities=13%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             CCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHhhcCCCCCCHHHHHHHHHH
Q psy8036          98 STPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLCSVQGRKFTETALDDLKEA  174 (194)
Q Consensus        98 ktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~~L~G~~~~~~~i~~~l~~  174 (194)
                      |||+|++..+.||+|     |.++++++|++|+|++|+|+|        ||+.   +.+|++.|+|++|+.++|.++|+.
T Consensus         1 kSP~f~~~~~~rf~~-----G~vev~l~V~~G~I~~iki~G--------Dff~~~~i~~le~~L~G~~y~~~~i~~~L~~   67 (88)
T d1vqza1           1 KSPEFNVRRGIKFTS-----GKVEVFANVTESKIQDIKIYG--------DFFGIEDVAAVEDVLRGVKYEREDVLKALKT   67 (88)
T ss_dssp             CCCCCSEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------SCCCSSCTHHHHHHHTTCBSSHHHHHHHHTT
T ss_pred             CCCcceeeeeeEcCC-----cEEEEEEEEeCCEEEEEEEEe--------cCCCchhHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            799999999999999     999999999999999999999        9988   589999999999999999999999


Q ss_pred             HhhcCcccCC-Cchhhhhh
Q psy8036         175 LTSRGQTYLG-TSLDRLVT  192 (194)
Q Consensus       175 ~~~~~~~~~~-~~~~~~~~  192 (194)
                      ++.  +.||| .+++|++.
T Consensus        68 ~~~--~~Yf~~i~~ee~~~   84 (88)
T d1vqza1          68 IDI--TRYFAGISREEIAE   84 (88)
T ss_dssp             SCG--GGTSTTCCHHHHHH
T ss_pred             CCH--HHHhCCCCHHHHHH
Confidence            999  99996 69999875

>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SP1160 C-terminal domain-like
domain: Two-domain LplA, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.2e-17  Score=113.52  Aligned_cols=69  Identities=20%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             CCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHhhcCCCCCCHHHHHHHHHH
Q psy8036          98 STPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLCSVQGRKFTETALDDLKEA  174 (194)
Q Consensus        98 ktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~~L~G~~~~~~~i~~~l~~  174 (194)
                      |||+|++..+.||+|     |.|+++++|++|+|++|+|+|        ||+.   +.+|++.|.|+||++++|.++|..
T Consensus         1 ~SP~f~~~~~~rF~~-----G~ve~~l~V~~G~I~~~~i~g--------Dfl~~~~i~~le~~L~G~~y~~~~i~~~l~~   67 (91)
T d1x2ga1           1 QAPAFSHLLDERFTW-----GGVELHFDVEKGHITRAQVFT--------DSLNPAPLEALAGRLQGCLYRADMLQQECEA   67 (91)
T ss_dssp             CCCCCSEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------CCSCCHHHHHHHHHHTTCBSSHHHHHHHHHH
T ss_pred             CCCCCceeheeecCC-----ceEEEEEEEeCCEEEEEEEEc--------CCCCcHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence            699999999999999     999999999999999999999        9988   589999999999999999999999


Q ss_pred             HhhcC
Q psy8036         175 LTSRG  179 (194)
Q Consensus       175 ~~~~~  179 (194)
                      ++.+.
T Consensus        68 ~~~~~   72 (91)
T d1x2ga1          68 LLVDF   72 (91)
T ss_dssp             TGGGC
T ss_pred             HHhhC
Confidence            98843

>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Two-domain LplA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.3e-14  Score=114.89  Aligned_cols=84  Identities=17%  Similarity=0.357  Sum_probs=61.7

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCc--
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDW--   78 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~--   78 (194)
                      |.++|++++.|+.+|+++|++++||||+++++++++++++++|+++|.+.++...+           ...+  +.+++  
T Consensus       161 ~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f~~~~~~~~~-----------~~~~--~~~e~~~  227 (246)
T d1x2ga2         161 LANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVE-----------AEII--SPNKTPD  227 (246)
T ss_dssp             GGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCC-----------EEEE--CTTSCCS
T ss_pred             HHhhcCCCccchhhhcccchhhhCcCHHHhCCCCCHHHHHHHHHHHHHHHhCCCCe-----------eeeC--CHHHHHH
Confidence            56899999999999999999999999999998899999999999999987543211           1122  33332  


Q ss_pred             hhhHHHHHhhhCCcceecC
Q psy8036          79 FPGLAKIQSEYQSWEWRYG   97 (194)
Q Consensus        79 ~~~i~~~~~k~~sweW~yG   97 (194)
                      .+.+.+.+++|+|||||||
T Consensus       228 ~~~l~~~~~ky~s~eW~~g  246 (246)
T d1x2ga2         228 LPNFAETFARQSSWEWNFG  246 (246)
T ss_dssp             CTTHHHHHHHHTCHHHHTC
T ss_pred             HHHHHHHHHHhCCccCCCC
Confidence            2566777789999999998

>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=4e-14  Score=115.01  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP   80 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~   80 (194)
                      |.++|+++++++.+|+++|++++||||+++++ +++++|+++|+++|.+.++.+..           ...+  +++++ .
T Consensus       173 l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~~~-~~~e~~~~~l~~~f~~~~~~~~~-----------~~~l--t~~e~-~  237 (256)
T d2c8ma1         173 LSAVLKVPDEKFRDKIAKSTRERVANVTDFVD-VSIDEVRNALIRGFSETLHIDFR-----------EDTI--TEKEE-S  237 (256)
T ss_dssp             HHHHTC---------------CCBCCGGGTSC-CCHHHHHHHHHHHHHHHHTCEEE-----------ECCC--CHHHH-H
T ss_pred             HHHHhCCCccchhhhcccchHhhcccHHhcCC-CCHHHHHHHHHHHHHHHhCCCcc-----------ccCC--CHHHH-H
Confidence            45789999999999999999999999999874 99999999999999987443211           1112  44555 7


Q ss_pred             hHHHHH-hhhCCcceecC
Q psy8036          81 GLAKIQ-SEYQSWEWRYG   97 (194)
Q Consensus        81 ~i~~~~-~k~~sweW~yG   97 (194)
                      .+.++. +||++||||||
T Consensus       238 ~~~~l~~~ky~~~eW~yg  255 (256)
T d2c8ma1         238 LARELFDKKYSTEEWNMG  255 (256)
T ss_dssp             HHHHHHHHTTTSHHHHHC
T ss_pred             HHHHHHHhhcCCccCCCC
Confidence            788876 48999999999

>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=1.3e-13  Score=110.98  Aligned_cols=82  Identities=17%  Similarity=0.362  Sum_probs=66.9

Q ss_pred             CccccCCCccccccccccccccccccccccCCC-CCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCch
Q psy8036           1 MRIATGASMKGIISNATASTPAPTLNLQEVCPE-VSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWF   79 (194)
Q Consensus         1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~-i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~   79 (194)
                      |.++|+++++++.+||++|++++|+||++.++. +++++|+++|+++|.+.++ ..           ....+  +++++ 
T Consensus       158 ~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~~~~~-~~-----------~~~~l--~~~e~-  222 (241)
T d1vqza2         158 LANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP-EM-----------TEYVF--SEEEL-  222 (241)
T ss_dssp             HHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT-TC-----------EECCC--CHHHH-
T ss_pred             HHHHhCCCcccchhhccccchhhccchHHHhCCCCCHHHHHHHHHHHHHHHcC-CC-----------cccCC--CHHHH-
Confidence            357899999999999999999999999998864 9999999999999998632 10           11223  45565 


Q ss_pred             hhHHHHHh-hhCCcceecC
Q psy8036          80 PGLAKIQS-EYQSWEWRYG   97 (194)
Q Consensus        80 ~~i~~~~~-k~~sweW~yG   97 (194)
                      +.+.++++ ||+|||||||
T Consensus       223 ~~~~~l~~~ky~s~~W~~g  241 (241)
T d1vqza2         223 AEINRIKDTKFGTWDWNYG  241 (241)
T ss_dssp             HHHHHHHHHTTTCHHHHTC
T ss_pred             HHHHHHHHhHcCCccccCC
Confidence            78888885 8999999998

>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Hypothetical protein BH3822
species: Bacillus halodurans [TaxId: 86665]

Probab=96.35  E-value=0.00016  Score=57.76  Aligned_cols=49  Identities=6%  Similarity=-0.031  Sum_probs=39.0

Q ss_pred             ccccCCCcc-ccccccccccccc-----cccccccCC-CCCHHHHHHHHHHHHHhh
Q psy8036           2 RIATGASMK-GIISNATASTPAP-----TLNLQEVCP-EVSMDRLIKSLGYEYLRT   50 (194)
Q Consensus         2 ~~~L~~~~~-Kl~sKgV~SVrsr-----VtNL~~~~~-~i~~e~f~~~l~~~f~~~   50 (194)
                      .++|+++.+ ++.+|+++|++++     ||||+++++ .+++++|+++|.++|.+.
T Consensus       178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~f~~~  233 (265)
T d2p5ia1         178 AKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQH  233 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhccchhhhccccccccccccchhhcCcHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence            345665544 4889999998765     799999764 599999999999999764

>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Streptococcus agalactiae [TaxId: 1311]

Probab=95.69  E-value=0.0032  Score=50.04  Aligned_cols=42  Identities=12%  Similarity=0.139  Sum_probs=35.3

Q ss_pred             ccccccccccccccccccccccCC-CCCHHHHHHHHHHHHHhh
Q psy8036           9 MKGIISNATASTPAPTLNLQEVCP-EVSMDRLIKSLGYEYLRT   50 (194)
Q Consensus         9 ~~Kl~sKgV~SVrsrVtNL~~~~~-~i~~e~f~~~l~~~f~~~   50 (194)
                      ..+..++..+++++|||||+++++ ++++++++++|+.+|.+.
T Consensus       200 ~~~~~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~~~  242 (269)
T d2p0la1         200 DTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQV  242 (269)
T ss_dssp             TTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCccchhheeeHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            345556666789999999999886 499999999999999875

>d1t3qc1 d.87.2.1 (C:177-285) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
family: CO dehydrogenase flavoprotein C-terminal domain-like
domain: Quinoline 2-oxidoreductase medium subunit QorM
species: Pseudomonas putida [TaxId: 303]

Probab=92.61  E-value=0.28  Score=32.70  Aligned_cols=57  Identities=14%  Similarity=0.073  Sum_probs=42.2

Q ss_pred             ceEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036         118 GQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS  177 (194)
Q Consensus       118 G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~~  177 (194)
                      -.+-+.+++++|+|++++|.-  |-+.+ -..-...+++.|.|.+++.+.+.++...+..
T Consensus        17 v~vA~~~~~~~g~i~~~ria~--G~v~~-~p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~   73 (109)
T d1t3qc1          17 VMAAAGLSMQGGRCVAARIAL--GAVEE-RAHQAIRANDFLVGKVIDESTAATAAELATE   73 (109)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred             HhhheEEEEeCCEEEEEEEEE--ECcCC-ccccHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            456677788999999999985  22222 1111468999999999999999888776643

>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
family: CO dehydrogenase flavoprotein C-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=91.00  E-value=0.46  Score=31.62  Aligned_cols=57  Identities=12%  Similarity=0.196  Sum_probs=41.5

Q ss_pred             ceEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036         118 GQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS  177 (194)
Q Consensus       118 G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~~  177 (194)
                      -.+-+.+.+++|+|++++|.-  |-+.+ -..-..++++.|.|.+++.+.++++...+..
T Consensus        19 v~~a~~~~~~~~~i~~~ria~--ggv~~-~P~r~~~~e~~L~G~~~~~~~~~~a~~~~~~   75 (110)
T d1ffvc1          19 AGCAVVMRKSGNTVSHIRIAL--TNVAP-TALRAEAAEAALLGKAFTKEAVQAAADAAIA   75 (110)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHTTBTSBCCHHHHHHHHHHHHH
T ss_pred             HhheeEEEEeCCEEEEEEEEE--eccCC-eeEeehhhhhhhcCCccchHHHHHHHHHHHh
Confidence            355677788999999999984  22222 1111468899999999999999988876543

>d1jroa3 d.87.2.1 (A:346-462) Xanthine dehydrogenase chain A, domain 4 {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
family: CO dehydrogenase flavoprotein C-terminal domain-like
domain: Xanthine dehydrogenase chain A, domain 4
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=89.75  E-value=1  Score=30.11  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             eEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036         119 QLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT  176 (194)
Q Consensus       119 ~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~  176 (194)
                      .+-+.+++++|.|++++|..  |-+.+ -..-..++++.|.|.+++.+.+.++...+.
T Consensus        20 ~~A~~~~~~~~~i~~~ria~--G~v~~-~P~r~~~~e~~L~gk~~~~~~~~~a~~~~~   74 (117)
T d1jroa3          20 CGCLNLTLKGSKIETARIAF--GGMAG-VPKRAAAFEAALIGQDFREDTIAAALPLLA   74 (117)
T ss_dssp             EEEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHHHTTSBCSHHHHHHHGGGHH
T ss_pred             EeeEEEEEcCCceEEEEEEe--cccCC-eEeehHHHHHHHccCCCChHHHHHHHHHHH
Confidence            45577778999999999985  22222 111146899999999999999988876654

>d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
family: CO dehydrogenase flavoprotein C-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=89.10  E-value=0.94  Score=29.86  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             ceEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036         118 GQLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT  176 (194)
Q Consensus       118 G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~  176 (194)
                      ..+-+.+.+++|+|++++|.-  |-+.+ -..-..+.++.|.|.+++.+.++++...+.
T Consensus        19 v~vA~~~~~d~g~i~~~ria~--ggv~~-~p~r~~~~e~~L~g~~~~~~~~~~a~~~~~   74 (109)
T d1n62c1          19 AAAAVVLTMSGGKCVTASIGL--TNVAN-TPLWAEEAGKVLVGTALDKPALDKAVALAE   74 (109)
T ss_dssp             EEEEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HhheeEEEEeCCeEEEEEEEE--EcccC-eeeehHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            466678888999999999984  22222 111146899999999999999998887664

>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: IscU homolog SPy0289
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.17  E-value=0.85  Score=31.54  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=46.3

Q ss_pred             HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCC
Q psy8036          85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQG  160 (194)
Q Consensus        85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G  160 (194)
                      +.+.|+.+. ++|.-+.+.. ...+-|. +|  ..|.|.+.+++++|+++.+.+.       -+..    ..-+.+.+.|
T Consensus         9 Ildh~~nP~-n~g~l~~~~~-~~~~Np~-CG--D~i~i~l~i~~~~I~di~f~~~-------GCai~~ASasil~e~i~g   76 (136)
T d1su0b_           9 VADHSKRPH-HHGQLDGVEA-VQLNNPT-CG--DVISLTVKFDEDKIEDIAFAGN-------GCTISTASSSMMTDAVIG   76 (136)
T ss_dssp             HHHHHHSCS-SBSCCTTCCC-EEEECSS-SC--CEEEEEEEESSSSEEEEEEEEE-------CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCC-CCCCCCCCCe-eeecCCC-CC--CEEEEEEEEcCCeeeEEEEEec-------cCHHHHHHHHHHHHHHhC
Confidence            445666666 6888877754 3344342 12  5899999999999999999971       2211    1234478899


Q ss_pred             CCCCH
Q psy8036         161 RKFTE  165 (194)
Q Consensus       161 ~~~~~  165 (194)
                      ...+.
T Consensus        77 k~~~e   81 (136)
T d1su0b_          77 KSKEE   81 (136)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            98864

>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
family: CO dehydrogenase flavoprotein C-terminal domain-like
domain: Xanthine oxidase, domain 4 (?)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.19  E-value=0.82  Score=30.68  Aligned_cols=52  Identities=10%  Similarity=0.107  Sum_probs=35.9

Q ss_pred             EEEEEe--CCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036         122 ISLEIV--KGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT  176 (194)
Q Consensus       122 v~l~v~--~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~  176 (194)
                      +.+.++  +++|++++|.-  |-+.+ -..-..+.++.|+|.+++.+.+.++...+.
T Consensus        24 ~~v~l~~~~~~i~~~ria~--Ggva~-~p~r~~~~E~~L~Gk~~~~~~~~~a~~~l~   77 (114)
T d1v97a4          24 MRVLFQPGSMQVKELALCY--GGMAD-RTISALKTTQKQLSKFWNEKLLQDVCAGLA   77 (114)
T ss_dssp             EEEEESTTSSBEEEEEEEE--ESSSS-SCEECHHHHHTTTTCBSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCEEEEEEEEE--ecCCc-ccchHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            444554  34999999974  22222 111146899999999999999999987654