Psyllid ID: psy8114

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccEEEEEEcEEccccccccEEEEc
Coil and Loop (DISEMBL)
MKWLQPLVLFLMVTLFMKkslampplqctpgfvdqipFKIRKICVALSTIYELSNAMesyiddngsmdqfvnPEINQLMEngvkrqdmDHVFLRYGkitsdgwvspvhvyk
Flexible Loop (DISEMBL)
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYgkitsdgwvspvhvyk
Low Complexity Region (SEG)
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK
Disordered region (IsUnstruct)
**WLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIY*********************************RQDMDHVFLRYGKITSDGWVSPVHV**
Disordered Region (DISOPRED)
*KWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVY*
Disordered Region (DISEMBL)
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK
Disordered Region (DISPRO)
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKWLQPLVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGVKRQDMDHVFLRYGKITSDGWVSPVHVYK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
P85527	86	Myosuppressin OS=Apis mel	no	N/A	0.756	0.976	0.517	2e-18
P61849	100	Dromyosuppressin OS=Droso	yes	N/A	0.783	0.87	0.373	1e-10

>sp|P85527|NEMS_APIME Myosuppressin OS=Apis mellifera PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 13 VTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVN 72
          + +F    LA  P QC PGF+D +P +IRK+CVALS IYEL + MESYI D  +     +
Sbjct: 1  MAIFCNNVLAALPTQCNPGFLDDLPPRIRKVCVALSRIYELGSEMESYIGDKENHITGFH 60

Query: 73 PEINQLMENGVKRQDMDHVFLRYGK 97
            I  L+++GVKRQD+DHVFLR+G+
Sbjct: 61 ESI-PLLDSGVKRQDVDHVFLRFGR 84

Myoinhibiting neuropeptide.
Apis mellifera (taxid: 7460)

>sp|P61849|NEMS_DROME Dromyosuppressin OS=Drosophila melanogaster GN=Dms PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 7  LVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGS 66
          L + L+     + ++  PPL C  G V+++P  IRK+C AL    +L++A++SYI++  S
Sbjct: 12 LAIVLLAVSNTRAAVQGPPL-CQSGIVEEMPPHIRKVCQALENSDQLTSALKSYINNEAS 70

Query: 67 MDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
              +    + L++N  KR D+DHVFLR+GK
Sbjct: 71 A---LVANSDDLLKNYNKRTDVDHVFLRFGK 98

Myoinhibiting neuropeptide.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
46019615	96	leucomyosuppressin precursor [Blattella	0.756	0.875	0.5	2e-18
340720541	100	PREDICTED: myosuppressin-like [Bombus te	0.810	0.9	0.505	7e-18
328786993	100	PREDICTED: myosuppressin [Apis mellifera	0.810	0.9	0.516	7e-18
345496759	105	PREDICTED: myosuppressin [Nasonia vitrip	0.783	0.828	0.483	8e-18
209867502	107	myosuppressin [Apis mellifera]	0.810	0.841	0.516	8e-18
190359904	86	RecName: Full=Myosuppressin; Flags: Prec	0.756	0.976	0.517	7e-17
383860548	98	PREDICTED: myosuppressin-like [Megachile	0.810	0.918	0.489	8e-17
1765940	96	leucomyosuppressin precursor [Diploptera	0.756	0.875	0.466	5e-16
242247208	108	leucomyosuppressin-like precursor [Acyrt	0.621	0.638	0.432	3e-10
195035986	101	GH18813 [Drosophila grimshawi] gi|193893	0.774	0.851	0.377	5e-10

>gi|46019615|emb|CAF04070.1| leucomyosuppressin precursor [Blattella germanica]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 63/90 (70%), Gaps = 6/90 (6%)

Query: 8  VLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSM 67
          VL +++      + A+PP QC+P  +D +P ++RK+C ALSTIYELSNAME+Y+DD    
Sbjct: 11 VLAVLLACMPHMASAVPPPQCSPNILDDVPPRVRKVCAALSTIYELSNAMEAYLDDK--- 67

Query: 68 DQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
             V  E   L++ GVKRQD+DHVFLR+G+
Sbjct: 68 ---VVRENTPLVDTGVKRQDVDHVFLRFGR 94

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720541|ref|XP_003398693.1| PREDICTED: myosuppressin-like [Bombus terrestris] gi|350414930|ref|XP_003490475.1| PREDICTED: myosuppressin-like [Bombus impatiens]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 7  LVLFLMVTLFMKKS--LAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDN 64
          ++LF M T+ +  +  LA  P QC PGF+D +P +IRK+C ALS IYEL + MESYIDD 
Sbjct: 7  VILFSMTTMAISYNNVLAALPTQCNPGFLDDLPPRIRKVCAALSRIYELGSEMESYIDDK 66

Query: 65 GSMDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
           +     +  I  L+++GVKRQD+DHVFLR+G+
Sbjct: 67 DNHISGFHESI-PLLDSGVKRQDVDHVFLRFGR 98

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786993|ref|XP_001122576.2| PREDICTED: myosuppressin [Apis mellifera]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 3/93 (3%)

Query: 7  LVLFLMVTL--FMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDN 64
          ++LF M T+  F    LA  P QC PGF+D +P +IRK+CVALS IYEL + MESYI D 
Sbjct: 7  VILFSMTTMAIFCNNVLAALPTQCNPGFLDDLPPRIRKVCVALSRIYELGSEMESYIGDK 66

Query: 65 GSMDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
           +     +  I  L+++GVKRQD+DHVFLR+G+
Sbjct: 67 ENHITGFHESI-PLLDSGVKRQDVDHVFLRFGR 98

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496759|ref|XP_001601243.2| PREDICTED: myosuppressin [Nasonia vitripennis]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 4/91 (4%)

Query: 7   LVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGS 66
           L L  ++     ++  MPP QC+PG +D++P +IRK+C ALSTIYEL +AME+YI+D   
Sbjct: 17  LCLCAVLATLCGEAHGMPPAQCSPGLLDEVPPRIRKVCAALSTIYELGSAMENYINDKVP 76

Query: 67  MDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
           + +   P    L ++GVKRQD+DHVFLR+G+
Sbjct: 77  VLREDIP----LPDSGVKRQDVDHVFLRFGR 103

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209867502|gb|ACI90289.1| myosuppressin [Apis mellifera]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 7   LVLFLM--VTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDN 64
           ++LF M  +T+F    LA  P QC PGF+D +P +IRK+CVALS IYEL + MESYI D 
Sbjct: 14  VILFSMTTMTIFCNNVLAALPTQCNPGFLDDLPPRIRKVCVALSRIYELGSEMESYIGDK 73

Query: 65  GSMDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
            +     +  I  L+++GVKRQD+DHVFLR+G+
Sbjct: 74  ENHITGFHESI-PLLDSGVKRQDVDHVFLRFGR 105

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|190359904|sp|P85527.1|NEMS_APIME RecName: Full=Myosuppressin; Flags: Precursor

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 13 VTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVN 72
          + +F    LA  P QC PGF+D +P +IRK+CVALS IYEL + MESYI D  +     +
Sbjct: 1  MAIFCNNVLAALPTQCNPGFLDDLPPRIRKVCVALSRIYELGSEMESYIGDKENHITGFH 60

Query: 73 PEINQLMENGVKRQDMDHVFLRYGK 97
            I  L+++GVKRQD+DHVFLR+G+
Sbjct: 61 ESI-PLLDSGVKRQDVDHVFLRFGR 84

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860548|ref|XP_003705751.1| PREDICTED: myosuppressin-like [Megachile rotundata]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 7  LVLFLMVTLFMKKSL-AMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNG 65
          ++ FL++T+ +  ++ A  P QC+PGF+D +P +IRK+C ALS IYEL + MESYID+  
Sbjct: 6  MICFLIMTMAVVYNVSAALPTQCSPGFLDDLPPRIRKVCAALSRIYELGSEMESYIDEKE 65

Query: 66 SMDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
          +     +  I  L+++GVKRQD+DHVFLR+GK
Sbjct: 66 NHITGFHENI-PLLDSGVKRQDVDHVFLRFGK 96

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1765940|gb|AAB39926.1| leucomyosuppressin precursor [Diploptera punctata]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 6/90 (6%)

Query: 8  VLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSM 67
          VL +++    +++ A+PP QC+   ++ I  + RKIC ALS+IY+LS+AME+Y++D    
Sbjct: 11 VLTVLLACAPRRAAAVPPPQCSSNMLEDISPRFRKICAALSSIYDLSSAMEAYLEDK--- 67

Query: 68 DQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
             V  E   LM+NGVKRQD+DHVFLR+G+
Sbjct: 68 ---VVRENTPLMDNGVKRQDVDHVFLRFGR 94

Source: Diploptera punctata

Species: Diploptera punctata

Genus: Diploptera

Family: Blaberidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247208|ref|NP_001156174.1| leucomyosuppressin-like precursor [Acyrthosiphon pisum] gi|239791396|dbj|BAH72170.1| ACYPI004856 [Acyrthosiphon pisum]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 12/81 (14%)

Query: 25  PLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSMDQFVNPEINQLMENGV- 83
           P +C PG ++  P K+R+ C+ LSTI  LSNA+E++I D     QF  P     M +G+ 
Sbjct: 29  PTRCMPGLLEDAPPKVREACLTLSTIRTLSNAIETFIQDK----QFPMPMPYSRMSDGLV 84

Query: 84  -------KRQDMDHVFLRYGK 97
                  KRQD+DHVFLR+G+
Sbjct: 85  DTAMQNDKRQDLDHVFLRFGR 105

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035986|ref|XP_001989452.1| GH18813 [Drosophila grimshawi] gi|193893648|gb|EDV92514.1| GH18813 [Drosophila grimshawi]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 8  VLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGSM 67
          ++ L V +   ++    PL C PG V+++P  I+K+C+AL    +L++A++SYI++  S 
Sbjct: 14 IVLLAVGVHSAQAATQAPL-CQPGIVEEMPQHIKKVCMALENSDQLTSALKSYINNEASA 72

Query: 68 DQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
             +    + LM+N  KR D+DHVFLR+GK
Sbjct: 73 ---LVANSDDLMKNYNKRTDVDHVFLRFGK 99

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0011581	100	Dms "Dromyosuppressin" [Drosop	0.783	0.87	0.384	4.5e-11

FB|FBgn0011581 Dms "Dromyosuppressin" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/91 (38%), Positives = 56/91 (61%)

Query:     7 LVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNGS 66
             L + L+     + ++  PPL C  G V+++P  IRK+C AL    +L++A++SYI++  S
Sbjct:    12 LAIVLLAVSNTRAAVQGPPL-CQSGIVEEMPPHIRKVCQALENSDQLTSALKSYINNEAS 70

Query:    67 MDQFVNPEINQLMENGVKRQDMDHVFLRYGK 97
                  N +   L++N  KR D+DHVFLR+GK
Sbjct:    71 A-LVANSD--DLLKNYNKRTDVDHVFLRFGK 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111       111   0.00091  102 3  11 22  0.40    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.35u 0.07s 12.42t   Elapsed:  00:00:07
  Total cpu time:  12.35u 0.07s 12.42t   Elapsed:  00:00:07
  Start:  Thu Aug 15 13:56:39 2013   End:  Thu Aug 15 13:56:46 2013

GO:0005184 "neuropeptide hormone activity" evidence=ISS;NAS;TAS

GO:0045822 "negative regulation of heart contraction" evidence=IDA

GO:0007218 "neuropeptide signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61849	NEMS_DROME	No assigned EC number	0.3736	0.7837	0.87	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF01581	11	FARP: FMRFamide related peptide family; InterPro:	90.8
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	89.44

>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []

Probab=90.80  E-value=0.081  Score=24.70  Aligned_cols=9  Identities=44%  Similarity=1.206  Sum_probs=7.3

Q ss_pred             ceeeeeccc
Q psy8114          89 DHVFLRYGK   97 (111)
Q Consensus        89 DHVFLRFGR   97 (111)
                      |.-|+||||
T Consensus         3 ~~~~~RFGr   11 (11)
T PF01581_consen    3 DNNFMRFGR   11 (11)
T ss_pred             cccccccCC
Confidence            456999998

FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=89.44  E-value=0.42  Score=36.26  Aligned_cols=55  Identities=24%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q psy8114           7 LVLFLMVTLFMKKSLAMPPLQCTPGFVDQIPFKIRKICVALSTIYELSNAMESYIDDNG   65 (111)
Q Consensus         7 ~v~~~~~~i~~~~A~AapPp~C~p~~lDelpPriRKiC~AL~ni~els~Ame~YIddq~   65 (111)
                      ||+++++.++|+...++.||-=+|..+..+--.++.|=++=+++.|    +++||+++.
T Consensus         9 Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i~~~~~~i~~~~~r~~e----Lk~lI~kk~   63 (142)
T TIGR03042         9 LVLLLTFLVSCSGPAAAVPPTYSPAQLAQIQRQAEGIEAAKDRLPE----LASLVAKED   63 (142)
T ss_pred             HHHHHHHHHHcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHhhHH----HHHHHhhcc
Confidence            5667777888888777778888888888666666666666665555    688998874

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2d5ba1	152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	85.96

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=85.96  E-value=0.74  Score=30.16  Aligned_cols=46  Identities=15%  Similarity=0.136  Sum_probs=34.6

Q ss_pred             cCCCCCCCcccccCCChHHHHHH---------HHHHHHHHHHHHHHHhHhhcCCC
Q psy8114          22 AMPPLQCTPGFVDQIPFKIRKIC---------VALSTIYELSNAMESYIDDNGSM   67 (111)
Q Consensus        22 AapPp~C~p~~lDelpPriRKiC---------~AL~ni~els~Ame~YIddq~~~   67 (111)
                      ...|.......++++-.-+.++.         .|++.++++++..|.||+++++|
T Consensus        22 g~vP~~~~~~~~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~yi~~~~PW   76 (152)
T d2d5ba1          22 GRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPW   76 (152)
T ss_dssp             TBCCCCCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CcCCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666667776665566555         46778899999999999998877