Psyllid ID: psy8120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MKLKHTQISLRNNNDYSHLPPSLSDAPGEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISSQYLDHDFDSREVTSGESRSKPETFHSKDDPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNLIGRDIFSATASPFSSRNTWSGPSPNNVYYPSCVRALPPTSPYSFPPYASPTSKFDV
cccccEEEEEccccccccccccccccccccccHHHHccccccccccccccccccHHHHcccccccHHHHHHHcccccccEEEEHHcccccccccccHHHcccccccccccccccccccccEEEccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHcccccccccEEcccccccccccccccccccccHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEEEEEEcccccccccccccccccccHHHHHHHcccccccHHHHccccccccHccccccccHHHHHHHEccccccEHEEEEEcccccEccccccccccccccccccccccccccccEccccccccccccccccccccccccEccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHcHHHHHHHHHccccccccEEEccccccccccccEEEEccccccccccccHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mklkhtqislrnnndyshlppslsdapgehfttlealapspshyretlyeddshrykehnryednrylehqvqdishDRYIEYVEEqsdikyndishadisrhdrldissqyldhdfdsrevtsgesrskpetfhskddpgygsviyetmtvpltgeeggeTFTVSYNVYntklngdvsqpsdILRQAFadlditpdqsagrttsviisnspepkqqilgensnvqnkkpdpqenqttprnkktkvsqknsssqpsssspppdessstsikvsspisspsstttdsnkppySYVALIAMAINNNEHKRATLAEIYNYIAVKFpyfeknkkgwqnsirhnlslnDCFVKVAKegagerkgnywtlATKHedmfengnyrrrrrmkrpvrtpsynakpylgdmyahqnligrdifsataspfssrntwsgpspnnvyypscvralpptspysfppyasptskfdv
MKLKHTQISLRNNNDYSHLPPSLSDAPGEHFTTLealapspshYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISSqyldhdfdsrevtsgesrskpetfhskddpgygsVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSViisnspepkqqilgensnvqnkkpdpqenqttprnkktkvsqknsssqpsssspppdessSTSIKVsspisspsstttdsnkppYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKegagerkgnywtlatkhedmfengnyrrrrrmkrpvrtpsynakpylGDMYAHQNLIGRDIFSATASPFssrntwsgpspnNVYYPSCVRALPPTspysfppyasptskfdv
MKLKHTQISLRNNNDYSHLPPSLSDAPGEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISSQYLDHDFDSREVTSGESRSKPETFHSKDDPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNsssqpsssspppdessstsikvsspisspsstttdsnkppYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYrrrrrmkrpvrTPSYNAKPYLGDMYAHQNLIGRDIFSATASPFSSRNTWSGPSPNNVYYPSCVRALPPTSPYSFPPYASPTSKFDV
****************************************************************NRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADI*****************************************YGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVS***DILRQAFADL**************************************************************************************************YSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF*******************YNAKPYLGDMYAHQNLIGRDIFSATA***************NVYYPSCVRA*********************
******Q***RNNNDYSHLPPSLSDAPGEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQ**************RHDRLDISSQYLD*****************************SVIYETMTVPLT**EGGETFTVSYNVY**************************************************************************************************************************YVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYR*************************************************************************************
MKLKHTQISLRNNNDYSHLPPSLSDAPGEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISSQYLDHDFD******************KDDPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQ*************************************************************KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNLIGRDIFSATASPFSSRNTWSGPSPNNVYYPSCVRALPPTSPYSFPPYA********
*KLKHTQISLRNNNDYSHLPPSLSD**GEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISS*YL**DFD*RE********KPETFHSKDDPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPD***************PSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKR******************************************************************************
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MKLKHTQISLRNNNDYSHLPPSLSDAPGEHFTTLEALAPSPSHYRETLYEDDSHRYKEHNRYEDNRYLEHQVQDISHDRYIEYVEEQSDIKYNDISHADISRHDRLDISSQYLDHDFDSREVTSGESRSKPETFHSKDDPGYGSVIYETMTVPLTGEEGGETFTVSYNVYNTKLNGDVSQPSDILRQAFADLDITPDQSAGRTTSVIISNSPEPKQQILGENSNVQNKKPDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRRMKRPVRTPSYNAKPYLGDMYAHQNLIGRDIFSATASPFSSRNTWSGPSPNNVYYPSCVRALPPTSPYSFPPYASPTSKFDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
O88470 375 Forkhead box protein L2 O yes N/A 0.289 0.357 0.513 4e-36
Q6VFT5 384 Forkhead box protein L2 O yes N/A 0.198 0.239 0.728 8e-36
Q6VFT6 377 Forkhead box protein L2 O yes N/A 0.198 0.244 0.728 8e-36
P58012 376 Forkhead box protein L2 O yes N/A 0.198 0.244 0.728 8e-36
Q4VUF1 373 Forkhead box protein L2 O N/A N/A 0.198 0.246 0.728 9e-36
Q8MIP2 377 Forkhead box protein L2 O N/A N/A 0.198 0.244 0.728 1e-35
Q6VFT7 377 Forkhead box protein L2 O yes N/A 0.198 0.244 0.728 1e-35
Q12952 345 Forkhead box protein L1 O no N/A 0.231 0.310 0.579 1e-32
Q64731 336 Forkhead box protein L1 O no N/A 0.218 0.300 0.594 2e-32
Q28HT3368 Forkhead box protein I2 O no N/A 0.209 0.263 0.618 2e-31
>sp|O88470|FOXL2_MOUSE Forkhead box protein L2 OS=Mus musculus GN=Foxl2 PE=1 SV=2 Back     alignment and function desciption
 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 95/148 (64%), Gaps = 14/148 (9%)

Query: 230 PDPQENQTTPRNKKTKVSQKNSSSQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKP 289
           P+P++   T    ++  + K + + P    P P +   T+ +   P          + KP
Sbjct: 6   PEPEDTAGTLLAPESGRAVKEAEASP----PSPGKGGGTTPEKPDP----------AQKP 51

Query: 290 PYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKV 349
           PYSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV
Sbjct: 52  PYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKV 111

Query: 350 AKEGAGERKGNYWTLATKHEDMFENGNY 377
            +EG GERKGNYWTL    EDMFE GNY
Sbjct: 112 PREGGGERKGNYWTLDPACEDMFEKGNY 139
Transcriptional regulator. Critical factor essential for ovary differentiation and maintenance, and repression of the genetic program for somatic testis determination. Prevents trans-differentiation of ovary to testis through transcriptional repression of the Sertoli cell-promoting gene SOX9. Has apoptotic activity in ovarian cells. Suppresses ESR1-mediated transcription of PTGS2/COX2 stimulated by tamoxifen. Activates SIRT1 transcription under cellular stress conditions. Activates transcription of OSR2. Is a regulator of CYP19 expression. Is a transcriptional repressor of STAR. Participates in SMAD3-dependent transcription of FST via the intronic SMAD-binding element.
Mus musculus (taxid: 10090)
>sp|Q6VFT5|FOXL2_RABIT Forkhead box protein L2 OS=Oryctolagus cuniculus GN=FOXL2 PE=3 SV=1 Back     alignment and function description
>sp|Q6VFT6|FOXL2_PIG Forkhead box protein L2 OS=Sus scrofa GN=FOXL2 PE=3 SV=1 Back     alignment and function description
>sp|P58012|FOXL2_HUMAN Forkhead box protein L2 OS=Homo sapiens GN=FOXL2 PE=1 SV=1 Back     alignment and function description
>sp|Q4VUF1|FOXL2_ELLLU Forkhead box protein L2 OS=Ellobius lutescens GN=FOXL2 PE=3 SV=1 Back     alignment and function description
>sp|Q8MIP2|FOXL2_CAPHI Forkhead box protein L2 OS=Capra hircus GN=FOXL2 PE=1 SV=1 Back     alignment and function description
>sp|Q6VFT7|FOXL2_BOVIN Forkhead box protein L2 OS=Bos taurus GN=FOXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q12952|FOXL1_HUMAN Forkhead box protein L1 OS=Homo sapiens GN=FOXL1 PE=2 SV=2 Back     alignment and function description
>sp|Q64731|FOXL1_MOUSE Forkhead box protein L1 OS=Mus musculus GN=Foxl1 PE=2 SV=2 Back     alignment and function description
>sp|Q28HT3|FOXI2_XENTR Forkhead box protein I2 OS=Xenopus tropicalis GN=foxi2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
322800175534 hypothetical protein SINV_05156 [Solenop 0.345 0.299 0.595 1e-41
307194451359 Forkhead box protein L2 [Harpegnathos sa 0.345 0.445 0.606 3e-40
242011099386 Forkhead box protein I1, putative [Pedic 0.356 0.427 0.508 8e-40
170050073384 forkhead protein/ forkhead protein domai 0.343 0.414 0.597 1e-39
345496591532 PREDICTED: hypothetical protein LOC10011 0.280 0.244 0.556 1e-38
340729697469 PREDICTED: hypothetical protein LOC10064 0.295 0.292 0.642 1e-38
350402252469 PREDICTED: hypothetical protein LOC10074 0.295 0.292 0.642 1e-38
270008307298 hypothetical protein TcasGA2_TC030577 [T 0.308 0.479 0.630 2e-38
157111107325 forkhead protein/ forkhead protein domai 0.215 0.307 0.752 2e-38
189237449333 PREDICTED: similar to AGAP008606-PA [Tri 0.308 0.429 0.630 2e-38
>gi|322800175|gb|EFZ21260.1| hypothetical protein SINV_05156 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/163 (59%), Positives = 122/163 (74%), Gaps = 3/163 (1%)

Query: 253 SQPSSSSPPPDESSSTSIKVSSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLA 312
           S PS+ +    +S++T++   +       ++  ++KPPYSYVALIAMAI +++HKRATL+
Sbjct: 156 SAPSTPTVAATDSTATAVATGTNNGINGGSSATNSKPPYSYVALIAMAIQDSKHKRATLS 215

Query: 313 EIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMF 372
           EIY YI  KFPYFEKNKKGWQNSIRHNLSLN+CFVKV +EG GERKGN+WTL  ++EDMF
Sbjct: 216 EIYAYITAKFPYFEKNKKGWQNSIRHNLSLNECFVKVPREGGGERKGNFWTLDPQYEDMF 275

Query: 373 ENGNYRRRRRMKRPVRTPSYNAKPYLGDMYA--HQNLIGRDIF 413
           ENGNYRRRRRMKRP R   Y   P  GD ++  H +L  R+IF
Sbjct: 276 ENGNYRRRRRMKRPYRNAPYK-PPLFGDPFSTTHMHLGSRNIF 317

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307194451|gb|EFN76749.1| Forkhead box protein L2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242011099|ref|XP_002426293.1| Forkhead box protein I1, putative [Pediculus humanus corporis] gi|212510361|gb|EEB13555.1| Forkhead box protein I1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170050073|ref|XP_001859188.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus] gi|167871657|gb|EDS35040.1| forkhead protein/ forkhead protein domain [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|345496591|ref|XP_001603061.2| PREDICTED: hypothetical protein LOC100119258 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340729697|ref|XP_003403133.1| PREDICTED: hypothetical protein LOC100644911 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350402252|ref|XP_003486421.1| PREDICTED: hypothetical protein LOC100742971 [Bombus impatiens] Back     alignment and taxonomy information
>gi|270008307|gb|EFA04755.1| hypothetical protein TcasGA2_TC030577 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157111107|ref|XP_001651393.1| forkhead protein/ forkhead protein domain [Aedes aegypti] gi|108878539|gb|EAT42764.1| AAEL005741-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|189237449|ref|XP_974828.2| PREDICTED: similar to AGAP008606-PA [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
ZFIN|ZDB-GENE-060512-241306 foxl2 "forkhead box L2" [Danio 0.343 0.519 0.477 5.8e-34
UNIPROTKB|Q5J7N5305 FOXL2 "Transcription factor FO 0.349 0.531 0.48 7.4e-34
ZFIN|ZDB-GENE-081022-71260 zgc:194189 "zgc:194189" [Danio 0.354 0.630 0.465 1.1e-32
UNIPROTKB|Q6VFT7 377 FOXL2 "Forkhead box protein L2 0.365 0.448 0.461 2.3e-32
UNIPROTKB|E2R718241 FOXL2 "Uncharacterized protein 0.326 0.626 0.487 2.3e-32
UNIPROTKB|F6Y816254 FOXL2 "Uncharacterized protein 0.326 0.594 0.487 2.3e-32
UNIPROTKB|P58012 376 FOXL2 "Forkhead box protein L2 0.365 0.449 0.461 2.3e-32
UNIPROTKB|Q6VFT6 377 FOXL2 "Forkhead box protein L2 0.365 0.448 0.461 2.3e-32
UNIPROTKB|Q4VUF1 373 FOXL2 "Forkhead box protein L2 0.362 0.450 0.453 2.3e-32
UNIPROTKB|Q6VFT5 384 FOXL2 "Forkhead box protein L2 0.365 0.440 0.461 2.3e-32
ZFIN|ZDB-GENE-060512-241 foxl2 "forkhead box L2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 83/174 (47%), Positives = 105/174 (60%)

Query:   291 YSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVA 350
             YSYVALIAMAI  +  KR TL+ IY YI  KFP++EKNKKGWQNSIRHNLSLN+CF+KV 
Sbjct:    49 YSYVALIAMAIRESSEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFIKVP 108

Query:   351 KEGAGERKGNYWTLATKHEDMFENGNYXXXXXXXXXXXTPSYNAKPYLGDMYAHQNLIGR 410
             +EG GERKGNYWTL    EDMFE GNY            P  + +P  G     ++L G 
Sbjct:   109 REGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPTHFQP--G-----KSLFGG 161

Query:   411 DIFSATASP--FSS---RNTWSGPSPNNVYYPSCVRALPPTSPYSFPPYASPTS 459
             + +   + P    S    N+WS P+P +  Y SC  +    SP +    ++P+S
Sbjct:   162 EGYGYLSPPKYLQSGFINNSWS-PAPMS--YTSCQVSSGSVSPVNMKGLSAPSS 212
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0006309 "apoptotic DNA fragmentation" evidence=IBA
GO:0007389 "pattern specification process" evidence=IBA
GO:0043028 "cysteine-type endopeptidase regulator activity involved in apoptotic process" evidence=IBA
GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IBA
GO:0002074 "extraocular skeletal muscle development" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0001541 "ovarian follicle development" evidence=IBA
GO:0019101 "female somatic sex determination" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0048048 "embryonic eye morphogenesis" evidence=IBA
GO:0030331 "estrogen receptor binding" evidence=IBA
GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0006917 "induction of apoptosis" evidence=IBA
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
UNIPROTKB|Q5J7N5 FOXL2 "Transcription factor FOXL2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081022-71 zgc:194189 "zgc:194189" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6VFT7 FOXL2 "Forkhead box protein L2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R718 FOXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6Y816 FOXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P58012 FOXL2 "Forkhead box protein L2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6VFT6 FOXL2 "Forkhead box protein L2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VUF1 FOXL2 "Forkhead box protein L2" [Ellobius lutescens (taxid:39086)] Back     alignment and assigned GO terms
UNIPROTKB|Q6VFT5 FOXL2 "Forkhead box protein L2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
pfam0025096 pfam00250, Fork_head, Fork head domain 6e-43
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 4e-42
smart0033989 smart00339, FH, FORKHEAD 2e-41
COG5025610 COG5025, COG5025, Transcription factor of the Fork 2e-14
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 3e-12
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  146 bits (370), Expect = 6e-43
 Identities = 56/95 (58%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K  TL+EIY +I   FPY+ +NK+GWQNSIRHNLSLN CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           KV +      KG+YWTL  + E+MFENG Y +RR+
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRK 95

Length = 96
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG3562|consensus277 100.0
KOG3563|consensus 454 100.0
KOG2294|consensus 454 99.98
KOG4385|consensus581 99.95
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.84
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.49
PF0053877 Linker_histone: linker histone H1 and H5 family; I 91.22
smart0052666 H15 Domain in histone families 1 and 5. 88.85
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 84.8
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-37  Score=258.85  Aligned_cols=96  Identities=54%  Similarity=1.026  Sum_probs=89.3

Q ss_pred             CCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeecCC
Q psy8120         288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATK  367 (463)
Q Consensus       288 KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLdP~  367 (463)
                      ||||||++||+|||+++|+++|||+|||+||+.+||||+.+..+||||||||||+|+||+||++.++..|||+||+|+++
T Consensus         1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~   80 (96)
T PF00250_consen    1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE   80 (96)
T ss_dssp             -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred             CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             hhhhhhccccccccCC
Q psy8120         368 HEDMFENGNYRRRRRM  383 (463)
Q Consensus       368 ~e~~fe~g~~RrRRr~  383 (463)
                      +...|+++.+++||++
T Consensus        81 ~~~~~~~~~~~~~~~~   96 (96)
T PF00250_consen   81 AIEEFEKGRFKRRRKR   96 (96)
T ss_dssp             HHHHHHHSCCSSSSSS
T ss_pred             HHHHHhcchhhhhhcc
Confidence            9999999988877653

Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>KOG3563|consensus Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 4e-24
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 4e-24
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 8e-24
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 1e-21
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 2e-17
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 3e-15
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 7e-14
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 2e-13
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 3e-13
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 9e-12
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 1e-11
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 2e-11
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 3e-11
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 5e-11
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 1e-10
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 2e-10
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 2e-10
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 6e-10
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 64/87 (73%)
Query: 291 YSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVA 350
           YSY+ALI MAI N   K+ TL  IY +I  +FP++ +NK+GWQNSIRHNLSLN+CFVKV 
Sbjct: 7   YSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVP 66
Query: 351 KEGAGERKGNYWTLATKHEDMFENGNY 377
           ++     KG+YWTL     +MFENG++
Sbjct: 67  RDDKKPGKGSYWTLDPDSYNMFENGSF 93
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
2c6y_A111 Forkhead box protein K2; transcription regulation, 3e-55
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 2e-54
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 5e-54
2hdc_A97 Protein (transcription factor); structure, dyanami 7e-54
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 6e-52
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 5e-45
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 4e-42
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 2e-41
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 2e-39
3bpy_A85 FORK head domain, forkhead transcription factor FO 7e-39
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 3e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
 Score =  178 bits (454), Expect = 3e-55
 Identities = 43/110 (39%), Positives = 56/110 (50%)

Query: 273 SSPISSPSSTTTDSNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGW 332
           +S            +KPPYSY  LI  AI     K+ TL  IY +I   +PY+    KGW
Sbjct: 1   ASMTGGQQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGW 60

Query: 333 QNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           QNSIRHNLSLN  F+KV +      KG++W +    E       +R+RR 
Sbjct: 61  QNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRP 110
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
Probab=100.00  E-value=4.3e-42  Score=290.62  Aligned_cols=96  Identities=56%  Similarity=1.042  Sum_probs=92.7

Q ss_pred             CCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeecC
Q psy8120         287 NKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLAT  366 (463)
Q Consensus       287 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLdP  366 (463)
                      .||||||++||+|||++||+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus         1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p   80 (97)
T 2hdc_A            1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence            49999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             ChhhhhhccccccccC
Q psy8120         367 KHEDMFENGNYRRRRR  382 (463)
Q Consensus       367 ~~e~~fe~g~~RrRRr  382 (463)
                      +++++|++|.++|||+
T Consensus        81 ~~~~~f~~g~~~rrr~   96 (97)
T 2hdc_A           81 QSEDMFDNGSFLRRRK   96 (97)
T ss_dssp             THHHHHHHSCCCSSSC
T ss_pred             CHHHHHhCCCccCCCC
Confidence            9999999999977765
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 5e-40
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 7e-39
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 2e-38
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 1e-28
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 2e-28
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 6e-28
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  136 bits (345), Expect = 5e-40
 Identities = 54/95 (56%), Positives = 70/95 (73%)

Query: 288 KPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFV 347
           KPPYSY+ALI MAI  +  K+ TL+ I  +I+ +FPY+ +    WQNSIRHNLSLNDCFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 348 KVAKEGAGERKGNYWTLATKHEDMFENGNYRRRRR 382
           K+ +E     KGNYWTL  + EDMF+NG++ RRR+
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRK 96
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 99.98
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.4
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 88.46
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 88.46
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-40  Score=275.91  Aligned_cols=97  Identities=43%  Similarity=0.801  Sum_probs=92.4

Q ss_pred             CCCCCCcHHHHHHHHHhcCCCCCcCHHHHHHHHHhcCCccccCcccccccccceeccCCceEeecccCCCCCCceeEeec
Q psy8120         286 SNKPPYSYVALIAMAINNNEHKRATLAEIYNYIAVKFPYFEKNKKGWQNSIRHNLSLNDCFVKVAKEGAGERKGNYWTLA  365 (463)
Q Consensus       286 ~~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~kGWQNSIRHNLSLNkcFvKVpR~g~~~GKG~yWtLd  365 (463)
                      +.||||||++||+|||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||+|..+++|||+||+|+
T Consensus         1 ~~KP~~sY~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~   80 (98)
T d2c6ya1           1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID   80 (98)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEEC
T ss_pred             CCCCCccHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEEC
Confidence            46999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             CChhhhhhccccccccC
Q psy8120         366 TKHEDMFENGNYRRRRR  382 (463)
Q Consensus       366 P~~e~~fe~g~~RrRRr  382 (463)
                      |+++..|.++.+++||+
T Consensus        81 p~~~~~~~~~~~~krr~   97 (98)
T d2c6ya1          81 PASESKLIEQAFRKRRP   97 (98)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             ccHHhhhhcchhhccCC
Confidence            99999999988877664
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure