Psyllid ID: psy8139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100-
Protein Sequence
MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQEDLDEAPPVPEHLDDGPEIR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHcccccHHHHHHcccccEEEEEEcccEEEEEEEEccEEcEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEEccccccccccEEcccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEEEcccccEEEEccccccccEEEEcccccccEEEEEEEEEcccccccccccccccEEEcccccccccEEEEccccEEEEccccEEEEEEEccccccEEEEEEEcEEEcccccEEEEEEccEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEEEccccccccccccccEEEEcccEEEEEEEEEEEcccEEEEEEccEEccccccEEEEEEccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEcccccccccEEEEEEcccEEEEEccccccccccccEEEEEEccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccEEEEccccccccEEEEcccccccEEEEEEEEEccccccccccccccEEEccccccccccEEEEEcccEEEEEEccccccccccEEEEEEEEccccccccEEEEEEEEccEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEEccccccccccccccccEEEEcEEEEEEcccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccccHHHHEEEccccHHcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHcHHccccccccccEEEccccccEEEEcccccEEcccEEEEEEEEcccccEEEEEEcEEEEEEEccccEEEEEEEEEccEEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEccccEEEEEEEEccccccEEEEEEccEEEEcEEEEEEEEcccEEEEEEEccEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccccccccccEEEEcccEEEEEEEcccccccccEEEEEEEcEEcccccEEEEEEEccccEEEEEEccccccEEEEEEEEEEcccccccccccccEEccccccccccccEEcccccEEEEcccccEEEEEEccccccEEEEEEccEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEccEEcccccEEEEEEcccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEcccccccccEEEEEcccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccEEEEEEccccccEEEEEEEEEEcccccccccccccEEEccccccccccEEEEEcccEEEEEEcccccccccEEEEEEEccccEEEccccEEEEEcccEEEEEEEEcccccccEEEEEEEEEccccccccEEEEEcccccccccccccEEEEccEEEEEEcccccccccEEEEEEcccEEEEEEEEEccEEEEEEEEcEcccccEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTAdnqfenqaPLYVRLEEAitglnvgtdlycvikkppgppgkpqllpdspsldrdvftirweppeydggspvlGYLVEhrrtgspywvrasphmvedtelmvsglepgwryqfritaenvvgfsepgplsepltvtyqrspaaapsFIRALHDttaledekveftvqvegiptpkvswykdgFEIFSSRrqrivtdndiSTLIIHQAALmdegeikctatnraghsitkarlrleapptirlpkqyeDGLLFEMGEIIKLKvsmagmppptarwlhngepltsggryeithtdrylnlrisdarradrgeyqahgvnslgEDVASFLVtvtdrplppgkaKVVMTLGKsvtlswsepeddggckigNYIVeyfrppgppgkpqllpdspsldrdvftirweppeydggspvlGYLVEhrrtgspywvrasphmvedtelmvsglepgwryqfritaenvvgfsepgplsepltvtyqrspaaapsFIRALHdttaledekprntnncdyeskrtfqstSPMLAAFMLLMLFTFIETISSFrdkyvdneddydivetnehtgtgapsdnenesdyfpektidesvygydtivygydsddldrhyptldeeeeeEDRESLVKdressvkgkeeeakvikddeyyENLGDVltkkyslpvnsdiqikidkpddepdyvikgkyevdnemllkrsklkpqyssemseasnitddedeedeedsfdfdelfednpeeeydeddrdqpinfarnrhnkyieddqeeiyhpklmtmrssqedldeappvpehlddgpeir
Flexible Loop (DISEMBL)
mqqcrsdylnlraktiliqtlwrsklamrrderefcmirsktiviqKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQarrfrfklnlrkYERVIELLKLkreqerqekyrhqcavkiqslwKMYRVRKKFADIIEQKKQakktadnqfenQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRweppeydggspVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEftvqvegiptpkvswykDGFEIFSSrrqrivtdndISTLIIHQAALMDEGEIKCTAtnraghsitkarlrleapptirlpKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWlhngepltsggryeithTDRYLNLRISDARRADRGEYQAhgvnslgedVASFLVTVTdrplppgkakVVMTLGKsvtlswsepeddgGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRweppeydggspVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDttaledekprntnncdyeskRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETnehtgtgapsdnenesdyFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTldeeeeeedreslvkdressvkgkeeeakvikddeyyeNLGDVltkkyslpvnsdiqikidkpddepdyVIKGkyevdnemllkrsklkpqyssemseasnitddedeEDEEDSFDFDElfednpeeeydeddrdqpinfarnrhnkyieddqeeiyHPKLMTMRSSqedldeappvpehlddgpeir
Low Complexity Region (SEG)
MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIkkppgppgkpQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRppgppgkpqllpDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPmlaafmllmlfTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTLdeeeeeedreSLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITddedeedeedsfdfdelfednpeeeydeddrdQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQEDLDEAPPVPEHLDDGPEIR
Disordered region (IsUnstruct)
******DYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIE************FENQAPLYVRLEEAITGLNVGTDLYCVIK********************DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE*******LTVTYQ***AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR*******************DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS********************************************************PMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIV***********************KTIDESVYGYDTIVYGYDSD***************************************KDDEYYENLGDVLTKKYSLPVNSDIQIKID******DYVIKGKYEV***************************************************************************************************************
Disordered Region (DISOPRED)
***CRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIA*N*********QARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE*G************SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP*******PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV*****P**APSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHT***********************VYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLL**********S*MSEASNITD**DE*DEEDSFDFDELFEDNPEEEYDEDD*D*****************************************************
Disordered Region (DISEMBL)
MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQ*********NQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTL**************************AKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLK**************************DFDELFEDN*********RDQPINFARNRHNKYIEDDQEEIYHPKLMTMR***********************
Disordered Region (DISPRO)
***CRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAK*LMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTAT*****************DEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQEDLDEAPPV***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNxxxxxxxxxxxxxxxxxxxxxKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQEDLDEAPPVPEHLDDGPEIR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1101	2.2.26 [Sep-21-2011]
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.404	0.012	0.280	6e-56
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.404	0.012	0.278	3e-55
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.335	0.051	0.289	1e-42
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.405	0.024	0.263	5e-36
Q9VC45	1954	Protein abnormal spindle	no	N/A	0.252	0.142	0.300	7e-31
O70468	1270	Myosin-binding protein C,	no	N/A	0.283	0.245	0.276	2e-28
P56741	1274	Myosin-binding protein C,	no	N/A	0.289	0.250	0.279	2e-27
P62290	3477	Abnormal spindle-like mic	N/A	N/A	0.243	0.077	0.286	2e-27
P62287	3477	Abnormal spindle-like mic	N/A	N/A	0.271	0.085	0.268	2e-27
P62292	3479	Abnormal spindle-like mic	no	N/A	0.271	0.085	0.268	3e-27

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  220 bits (560), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 229/517 (44%), Gaps = 72/517 (13%)

Query: 345   PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
             P  PG+ ++L    S+ +D  T++WE PE DGG  +LGY VE+R++G   W +++   ++
Sbjct: 32220 PSQPGELEIL----SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSNKERIK 32275

Query: 405   DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
             D +  + GL     Y+FR+ AEN  G S P   +  ++V  + +   AP   + + D T 
Sbjct: 32276 DRQFTIGGLLEATEYEFRVFAENETGLSRPRRTA--MSVKTKLTSGEAPGVRKEMADVTT 32333

Query: 465   LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
                E  + + Q+ G P P + WY+ G E+  SR+ ++ +D    TL +      DEG   
Sbjct: 32334 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTDEQEDEGVYT 32393

Query: 525   CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
             C ATN  G   + ++L L+A P        ++     +G  ++L V   G P P   W H
Sbjct: 32394 CVATNEVGEVESSSKLLLQAAPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 32453

Query: 585   NGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP- 642
               + L +  +  I +T+ Y +L + +  R+   G+Y+    N+ G   A+  V + D+P 
Sbjct: 32454 GQKLLQNSEKITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNAFGTVDATLDVEIQDKPD 32513

Query: 643   LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE----------------------- 679
              P G   +   L  SV +SW  P DDGG  I NY+VE                       
Sbjct: 32514 KPTGPIVIEALLKNSVVISWKPPADDGGSWITNYVVEKCEAKEGAEWQLVSSAISVTTCR 32573

Query: 680   ----------YFR--------------------------PPGPPGKPQLLPDSPSLDRDV 703
                       YFR                           PG PGKP +     ++ +D 
Sbjct: 32574 IVNLTENAGYYFRVSAQNTFGISEPLEVASIVIIKSPFEKPGVPGKPTIT----AVTKDS 32629

Query: 704   FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
               + W+PP  DGG+ +  Y +E R      W+  +   + +T   V  L  G  Y+FR+ 
Sbjct: 32630 CVVAWKPPASDGGAKIRNYYLERREKKQNKWIAVTTEEIRETVFSVQNLIEGLEYEFRVK 32689

Query: 764   AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 800
              EN+ G SE   +SEP+T      P  AP F   L +
Sbjct: 32690 CENLGGESEWSEISEPVT-PKSDVPIQAPHFKEELRN 32725

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/517 (27%), Positives = 225/517 (43%), Gaps = 72/517 (13%)

Query: 345   PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
             P  PG+ ++L    S+ +D  T++WE PE DGG  +LGY VE+R++G   W +++   ++
Sbjct: 31358 PSQPGELEIL----SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSNKERIK 31413

Query: 405   DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
             D +  + GL     Y+FR+ AEN  G S P   +  +++  + +   AP   + + D T 
Sbjct: 31414 DKQFTIGGLLEATEYEFRVFAENETGLSRPRRTA--MSIKTKLTSGEAPGIRKEMKDVTT 31471

Query: 465   LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
                E  + + Q+ G P P + WY+ G E+  SR+ ++ +D    TL +      DEG   
Sbjct: 31472 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 31531

Query: 525   CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
             C ATN  G   T ++L L+A P        ++     +G  ++L V   G P P   W H
Sbjct: 31532 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 31591

Query: 585   NGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP- 642
               + L +     I +T+ Y +L + +  R+   G+Y+    N  G   A   V + D+P 
Sbjct: 31592 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDKPD 31651

Query: 643   LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE----------------------- 679
              P G   +   L  S  +SW  P DDGG  I NY+VE                       
Sbjct: 31652 KPTGPIVIEALLKNSAVISWKPPADDGGSWITNYVVEKCEAKEGAEWQLVSSAISVTTCR 31711

Query: 680   ----------YFR--------------------------PPGPPGKPQLLPDSPSLDRDV 703
                       YFR                           PG PGKP +     ++ +D 
Sbjct: 31712 IVNLTENAGYYFRVSAQNTFGISDPLEVSSVVIIKSPFEKPGAPGKPTIT----AVTKDS 31767

Query: 704   FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
               + W+PP  DGG+ +  Y +E R      W+  +   + +T   V  L  G  Y+FR+ 
Sbjct: 31768 CVVAWKPPASDGGAKIRNYYLEKREKKQNKWISVTTEEIRETVFSVKNLIEGLEYEFRVK 31827

Query: 764   AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 800
              EN+ G SE   +SEP+T      P  AP F   L +
Sbjct: 31828 CENLGGESEWSEISEPIT-PKSDVPIQAPHFKEELRN 31863

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 184/421 (43%), Gaps = 52/421 (12%)

Query: 363  DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 422
            D  T+ W+ P  DGG  + GY+VE +      W R + +        V  L  G +Y++R
Sbjct: 5835 DYVTLSWQRPLSDGGGRLRGYIVEKQEEEHDEWFRCNQNPSPPNNYNVPNLIDGRKYRYR 5894

Query: 423  ITAENVVGFSEPGPLSEPLTVTYQRSPAA-APSFIRALHDTTALEDEKVEFTVQVEGIPT 481
            + A N  G S+   L + L   +Q S +   P  +  L D        V F  ++ G P 
Sbjct: 5895 VFAVNDAGLSDLAELDQTL---FQASGSGEGPKIVSPLSDLNEEVGRCVTFECEISGSPR 5951

Query: 482  PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
            P+  W+K   E+  + +  ++   D   LII+     D  E  C ATN +G   T+A LR
Sbjct: 5952 PEYRWFKGCKELVDTSKYTLINKGDKQVLIINDLTSDDADEYTCRATNSSGTRSTRANLR 6011

Query: 542  LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
            ++  P + +P +Y  G   + GE I+LK+     P   ARW  +GE + +  ++ IT  D
Sbjct: 6012 IKTKPRVFIPPKYHGGYEAQKGETIELKIPYKAYPQGEARWTKDGEKIENNSKFSITTDD 6071

Query: 602  RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
            ++  LRIS+A R D GEY+    NS+G D  +  VTV D P PP    +   L ++V LS
Sbjct: 6072 KFATLRISNASREDYGEYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILS 6131

Query: 662  WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
            W  P  DGG  + NY +E                     R+     W P           
Sbjct: 6132 WKPPALDGGSLVTNYTIE--------------------KREAMGGSWSP----------- 6160

Query: 722  YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
               + R T +                 + GL  G +Y+FRI AEN  G S+P   + P+ 
Sbjct: 6161 -CAKSRYTYT----------------TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVL 6203

Query: 782  V 782
            +
Sbjct: 6204 I 6204

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 208/519 (40%), Gaps = 72/519 (13%)

Query: 337   LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
             L+ VI + P  PG PQ L     +  D  T+ W+ PE DG S ++ Y++E++      W 
Sbjct: 17364 LHLVIMRKPTAPGTPQPL----EIMHDSITLYWKAPEDDGKSEIIEYILEYQDVKEEKWT 17419

Query: 397   RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI 456
                   ++DT   +S L+    Y FR  A N VG S P PLS P+ +   +    APS  
Sbjct: 17420 EI--RKIKDTTYTISKLKIDTEYVFRSIAVNEVGPSPPSPLSPPIRLV-PKVETKAPSVQ 17476

Query: 457   RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA 516
               L D  +  D++V  +    GIP PKV+W K+G ++F SR  R   +N ++   I +  
Sbjct: 17477 EPLQDVVSELDKEVTLSCVFGGIPEPKVTWKKNG-QVFESRSIRY--ENRVAKYTIEKTT 17533

Query: 517   LMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP 576
             +  E    C ATN  G + T  RL+L+  P + +  +Y    L   G I+ +  ++ G P
Sbjct: 17534 IETEATYTCVATNEKGSAETSCRLKLQQKPVLEVEDKYLTQKL-RTGSILTIPATVRGYP 17592

Query: 577   PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636
              PT  W        +     I  T+      +    R   G+Y+    N  G       V
Sbjct: 17593 QPTVTWHKETIEQKTTKSVTIETTETTSTYTVKKVTREQSGKYKVTATNESGTTYVECTV 17652

Query: 637   TVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGG----------CKIGN----------- 675
              V D+P  P   ++      S+ L W+ P DDGG          C + N           
Sbjct: 17653 QVIDKPSRPQSLEIKDIKKDSIVLEWTPPVDDGGLDIEKYTLEKCDVQNNVWMKVSDFNK 17712

Query: 676   -------------------------------------YIVEYFRPPGPPGKPQLLPDSPS 698
                                                   I + F  P PP  P  +     
Sbjct: 17713 DIKSYAVQKLSMNAQYMFRVVAANPIGESEPTESDPVTITKKFEKPSPPRGPTTVS---G 17769

Query: 699   LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
             ++   F + WEP E DGGS ++ Y+VE R      +      +   T + V  +     Y
Sbjct: 17770 MNDTSFNLAWEPSETDGGSKIIEYIVEIREETETTYRSVGVTLGTVTNIHVEKVVRNKGY 17829

Query: 759   QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
              FRI A N VG SE    +E + +  + +P + P  +RA
Sbjct: 17830 FFRIYARNEVGTSEAFETTEKIVLGRKITPPSPPQNLRA 17868

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VC45|ASP_DROME Protein abnormal spindle OS=Drosophila melanogaster GN=asp PE=1 SV=3

 Score =  136 bits (343), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 167/336 (49%), Gaps = 58/336 (17%)

Query: 1    MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
            M++C +DYL LR+  + +Q   ++ + MR D   +  +R   I +Q+  R  + MR++R+
Sbjct: 1187 MRKCNADYLALRSSVLKVQAYRKATIQMRIDRNHYYSLRKNVICLQQRLRAIMKMREQRE 1246

Query: 61   EYLAMKSSAVKIQEWYRNLQ--------------C-------------MRQARQQYLALK 93
             YL ++++++ +Q+ YR  Q              C             MR+ R+ YL L+
Sbjct: 1247 NYLRLRNASILVQKRYRMRQQMIQDRNAYLRTRKCIINVQRRWRATLQMRRERKNYLHLQ 1306

Query: 94   HATL-------------KQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSV 140
              T              KQR EFL+LK  T+ +Q   +A L M+++R  Y  L++  + +
Sbjct: 1307 TTTKRIQIKFRAKREMKKQRAEFLQLKKVTLVVQKRRRALLQMRKERQEYLHLREVTIKL 1366

Query: 141  QQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRA 200
            Q+R+ A  +MR  RA +   +   S +Q  +RN  L + E +   +L+ A IT+QRRYRA
Sbjct: 1367 QRRFHAQKSMRFMRAKYRGTQAAVSCLQMHWRNHLLRKRERNSFLQLRQAAITLQRRYRA 1426

Query: 201  NVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEY-----AELKQARRFRFKLNLRK 255
             + M  Q + Y  L+ A ITIQTR+RA    + Q   Y     A +K  RR+R  L +RK
Sbjct: 1427 RLNMIKQLKSYAQLKQAAITIQTRYRAKKAMQKQVVLYQKQREAIIKVQRRYRGNLEMRK 1486

Query: 256  YERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYR 291
                IE+ + +R          Q  +++Q  W+  R
Sbjct: 1487 Q---IEVYQKQR----------QAVIRLQKWWRSIR 1509

Required to maintain the structure of the centrosomal microtubule-organizing center (MTOC) during mitosis. May have a preferential role in regulating neurogenesis. Required for germ cell mitosis and oocyte differentiation.

Drosophila melanogaster (taxid: 7227)

>sp|O70468|MYPC3_MOUSE Myosin-binding protein C, cardiac-type OS=Mus musculus GN=Mybpc3 PE=1 SV=1

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 35/347 (10%)

Query: 354  LPDSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
            +PD+P+      +  D  T++WEPP YDGG PVLGY++E ++  S  W+R +  ++ +  
Sbjct: 767  VPDAPAAPKISNVGEDSCTVQWEPPAYDGGQPVLGYILERKKKKSYRWMRLNFDLLRELS 826

Query: 408  LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA--LHDTTAL 465
                 +  G  Y+ R+ A N VG S P P S+P        P   P+ +    + DTT  
Sbjct: 827  HEARRMIEGVAYEMRVYAVNAVGMSRPSPASQPFMPI---GPPGEPTHLAVEDVSDTTVS 883

Query: 466  EDEKVEFTVQVEGIPTPKVSWYKDG-------FEIFSSRRQRIVTDNDISTLIIHQAALM 518
               +    V   G+    V + ++G        +  + RR  +V D      ++      
Sbjct: 884  LKWRPPERVGAGGLDGYSVEYCQEGCSEWTPALQGLTERRSMLVKDLPTGARLL------ 937

Query: 519  DEGEIKCTATNRAGHS---ITKARLRLE---APPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
                 +  A N AG     +TK  + ++     P ++LP+     +  ++GE + L +  
Sbjct: 938  ----FRVRAHNVAGPGGPIVTKEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPF 993

Query: 573  AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
             G P P   W   G+PL +G    I ++     L I  ARR   G YQ        ED A
Sbjct: 994  QGKPRPQVTWTKEGQPL-AGEEVSIRNSPTDTILFIRAARRTHSGTYQVTVRIENMEDKA 1052

Query: 633  SFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
            + ++ + D+P PP   ++V T G +V L W  P+DDG  +I  Y V+
Sbjct: 1053 TLILQIVDKPSPPQDIRIVETWGFNVALEWKPPQDDGNTEIWGYTVQ 1099

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Mus musculus (taxid: 10090)

>sp|P56741|MYPC_RAT Myosin-binding protein C, cardiac-type OS=Rattus norvegicus GN=Mybpc3 PE=2 SV=2

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 155/340 (45%), Gaps = 21/340 (6%)

Query: 354  LPDSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
            +PD+P+      +  D   ++WEPP YDGG PVLGY++E ++  S  W+R +  ++ +  
Sbjct: 771  VPDAPAAPKISNVGEDSCIVQWEPPAYDGGQPVLGYILERKKKKSYRWMRLNFDLLRELS 830

Query: 408  LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA--LHDTTAL 465
                 +  G  Y+ R+ A N VG S P P S+P        P   P+ +    + DTT  
Sbjct: 831  HEARRMIEGVAYEMRVYAVNAVGMSRPSPASQPFMPI---GPPGEPTHLTVEDVSDTTVS 887

Query: 466  EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
               +    V   G+    V + ++G   + +  Q +    + ++L++           + 
Sbjct: 888  LKWRPPERVGAGGLDGYSVEYCQEGCSEWVTALQGL---TERTSLLVKDLPTGARLLFRV 944

Query: 526  TATNRAGHS---ITKARLRLE---APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
             A N AG     ITK  + ++     P ++LP+     +  ++GE + L +   G P P 
Sbjct: 945  RAHNVAGPGGPIITKEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQ 1004

Query: 580  ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
              W   G+PL +G    I ++     L I  A R   G YQ        ED A+ ++ + 
Sbjct: 1005 VTWTKEGQPL-AGEEVSIRNSPTDTILFIRAAHRTHSGTYQVTVRIENMEDKATLVLQIV 1063

Query: 640  DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
            D+P PP   +VV T G SV L W  P+DDG  +I  Y V+
Sbjct: 1064 DKPSPPLDIRVVETWGFSVALEWKPPQDDGNTEIWGYTVQ 1103

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Rattus norvegicus (taxid: 10116)

>sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associated protein homolog OS=Hylobates lar GN=ASPM PE=3 SV=1

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 60/328 (18%)

Query: 1    MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
            M+Q R  YL+LRA  + IQ  +RSK    +   E+  +R   I +Q + RGYL+ ++ R 
Sbjct: 1691 MKQTRXQYLHLRAAALFIQQCYRSKKIAAQKREEYMQMRESCIKLQAFVRGYLVRKQMRL 1750

Query: 61   EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATL-------------KQREEFLKLK 107
            +    + + + +Q ++R    MR+ARQ YL +  A +              QR+ FL++K
Sbjct: 1751 Q----RKAVISLQSYFR----MRKARQYYLKMYKAIIVIQNYYHAYKAQVNQRKNFLQVK 1802

Query: 108  HATIAIQTL---YKAKLLMKRD----------------RAAYTELKQACVSVQQRWRANL 148
             A   +Q     YK + L+K+                 R  Y  + Q+ + +Q+ +RA  
Sbjct: 1803 KAATCLQAAYRGYKVRQLIKQQSIAALKIQSAFRGYNKRVKYQSMLQSIIKIQRWYRAYK 1862

Query: 149  TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208
            T+   R HFL  K     +Q  YR  K+ R +    H+   A +TIQ  +R    M   +
Sbjct: 1863 TLHDTRTHFLKTKAAVISLQSAYRGWKV-RKQIRREHQ---AALTIQSAFR----MAKAQ 1914

Query: 209  ERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKRE 268
             ++   +TA + IQ  FRA+   + QR EY EL+ A        +   + + +   L+R+
Sbjct: 1915 XQFRLFKTAALVIQQNFRAWTAGRKQRMEYIELRHA--------VLMLQSMWKGKTLRRQ 1966

Query: 269  QERQEKYRHQCAVKIQSLWKMYRVRKKF 296
             +RQ    H+CA+ IQS ++M+  +KK+
Sbjct: 1967 LQRQ----HKCAIIIQSYYRMHVQQKKW 1990

Probable role in mitotic spindle regulation and coordination of mitotic processes. May have a preferential role in regulating neurogenesis.

Hylobates lar (taxid: 9580)

>sp|P62287|ASPM_COLGU Abnormal spindle-like microcephaly-associated protein homolog OS=Colobus guereza GN=ASPM PE=3 SV=1

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 70/369 (18%)

Query: 1    MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
            M+Q R  YL+LRA  + IQ  +RSK    +   E+  +R   I +Q + RGYL+ ++ R 
Sbjct: 1691 MKQTRKQYLHLRAAALFIQQCYRSKKIATQKREEYMQMRESCIKLQAFVRGYLVRKQMRL 1750

Query: 61   EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATL-------------KQREEFLKLK 107
            +    + + + +Q ++R    MR+ARQ YL +  A +              QR++FL++K
Sbjct: 1751 Q----RKAVISLQSYFR----MRKARQYYLKMYKAIIVIQNYYHAYKAQVNQRKKFLRVK 1802

Query: 108  HATIAIQTL---YKAKLLMKRD----------------RAAYTELKQACVSVQQRWRANL 148
             A   +Q     YK + L+K+                 R  Y  + Q+ + +Q+ +RA  
Sbjct: 1803 KAATCLQAAYRGYKIRQLIKQQSIAAVKIQSAFRGYNKRVKYQSVLQSIIKIQRWYRAYK 1862

Query: 149  TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208
            T+   R HFL  K     +Q  YR  K+ R +    H+   A + IQ  +R    M   +
Sbjct: 1863 TLHDTRTHFLKTKAAVVSLQSAYRGWKV-RKQIRREHQ---AALKIQSAFR----MAKAQ 1914

Query: 209  ERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKRE 268
            +++   +TA + IQ  FRA+   + QR EY EL+ A              +++ +   + 
Sbjct: 1915 KQFRLFKTAALVIQQNFRAWTAGRKQRMEYIELRHA------------VLILQSMWKGKT 1962

Query: 269  QERQEKYRHQCAVKIQSLWKM------YRVRKKFADIIEQKKQAKKTADNQFENQAPLYV 322
              RQ + +H+CA+ IQS ++M      +++ KK A +I++  +A      Q      LY+
Sbjct: 1963 LRRQLQRQHKCAIIIQSYYRMHVQQKKWKIMKKAALLIQKYYKAYSIGREQHH----LYL 2018

Query: 323  RLEEAITGL 331
            + + A+  L
Sbjct: 2019 KTKAAVVTL 2027

Probable role in mitotic spindle regulation and coordination of mitotic processes. May have a preferential role in regulating neurogenesis.

Colobus guereza (taxid: 33548)

>sp|P62292|ASPM_MACMU Abnormal spindle-like microcephaly-associated protein homolog OS=Macaca mulatta GN=ASPM PE=3 SV=1

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 70/369 (18%)

Query: 1    MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
            M+Q R  YL+LRA  + IQ  +RSK    +   E+  +R   I +Q + RGYL+ ++ R 
Sbjct: 1691 MKQTRKQYLHLRAAALFIQQCYRSKKITTQKREEYMQMRESCIKLQAFVRGYLVRKQMRL 1750

Query: 61   EYLAMKSSAVKIQEWYRNLQCMRQARQQYLAL-------------KHATLKQREEFLKLK 107
            +    + + + +Q ++R    MR+ARQ YL +               A + QR+ FL++K
Sbjct: 1751 Q----RKAVISLQSYFR----MRKARQYYLKMCKAIMVIQNYYHAYKAQVNQRKNFLRVK 1802

Query: 108  HATIAIQTL---YKAKLLMKRD----------------RAAYTELKQACVSVQQRWRANL 148
             A   +Q     YK + L+K+                 R  Y  + Q+ + +Q+ +RA  
Sbjct: 1803 KAATCLQAAYRGYKVRQLIKQQSIAALKIQSAFRGYNKRVKYQSVLQSIIKIQRWYRAYK 1862

Query: 149  TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208
            T+   R HFL  K     +Q  YR  K+ R +    H+   A + IQ  +R    M   +
Sbjct: 1863 TLHDTRTHFLKTKAAVVSLQSAYRGWKV-RKQIRREHQ---AALKIQSAFR----MAKAQ 1914

Query: 209  ERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKRE 268
            +++   +TA + IQ  FRA+   + QR EY EL+ A              +++ +   + 
Sbjct: 1915 KQFRLFKTAALVIQQNFRAWTAGRKQRMEYIELRHA------------VLILQSMWKGKT 1962

Query: 269  QERQEKYRHQCAVKIQSLWKM------YRVRKKFADIIEQKKQAKKTADNQFENQAPLYV 322
              RQ + +H+CA+ IQS ++M      +++ KK A +I++  +A      Q      LY+
Sbjct: 1963 LRRQLQRQHKCAIIIQSYYRMHVQQKKWKIMKKAALLIQKYYKAYSIGREQHH----LYL 2018

Query: 323  RLEEAITGL 331
            + + A+  L
Sbjct: 2019 KTKAAVVTL 2027

Probable role in mitotic spindle regulation and coordination of mitotic processes. May have a preferential role in regulating neurogenesis.

Macaca mulatta (taxid: 9544)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1101
158285457	1262	AGAP007556-PA [Anopheles gambiae str. PE	0.386	0.336	0.507	1e-134
270003233	1275	hypothetical protein TcasGA2_TC002437 [T	0.345	0.298	0.562	1e-133
91080005	1303	PREDICTED: similar to AGAP007556-PA [Tri	0.345	0.291	0.560	1e-133
170051182	675	titin [Culex quinquefasciatus] gi|167872	0.377	0.616	0.510	1e-132
312380227	1234	hypothetical protein AND_07769 [Anophele	0.364	0.324	0.523	1e-132
242022542	1138	conserved hypothetical protein [Pediculu	0.347	0.336	0.536	1e-130
350422387	10117	PREDICTED: hypothetical protein LOC10074	0.365	0.039	0.515	1e-127
307204648	9315	Myosin light chain kinase, smooth muscle	0.346	0.041	0.532	1e-124
157109568	587	titin [Aedes aegypti] gi|108878993|gb|EA	0.346	0.650	0.510	1e-123
195440933	1441	GK13215 [Drosophila willistoni] gi|19416	0.356	0.272	0.512	1e-122

>gi|158285457|ref|XP_308323.4| AGAP007556-PA [Anopheles gambiae str. PEST] gi|157020001|gb|EAA04475.5| AGAP007556-PA [Anopheles gambiae str. PEST]

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/487 (50%), Positives = 308/487 (63%), Gaps = 62/487 (12%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           +PPGPPGKP L+P SPS   DV TIRW  P  DGGSP+LGY+VE RRTGSP+WVRA P +
Sbjct: 28  EPPGPPGKPALVPGSPSSAPDVVTIRWSRPTTDGGSPILGYVVEQRRTGSPHWVRACPSL 87

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
           V+ TEL +SGLEPGWRYQFRI AEN+VG SE   LS+PLTVT QR+  +AP F+  L D 
Sbjct: 88  VQQTELSLSGLEPGWRYQFRIMAENIVGRSESSELSDPLTVTLQRNAISAPRFVHELFDA 147

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
           TA+E+EKVEF V V G P P++SW+KDGFEI+SSRR RI+T+ D+S L+IHQ AL DEGE
Sbjct: 148 TAVENEKVEFRVHVAGTPAPQISWFKDGFEIYSSRRARIITEADVSVLVIHQTALTDEGE 207

Query: 523 IKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARW 582
           IKC ATNRAGH++T+  L ++A P IRLP+QYEDGL+ E  E++++KV +AG PPP   W
Sbjct: 208 IKCAATNRAGHTVTRCHLTIDAYPKIRLPRQYEDGLIIEAEEVVRMKVGLAGRPPPAVEW 267

Query: 583 LHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
            HNGEPLT+ GR+EI  TD+   L+I    RADRGEY    +N LGED ASFLVTVT RP
Sbjct: 268 AHNGEPLTNDGRHEIVTTDKNSTLKIVSTNRADRGEYHIRALNKLGEDNASFLVTVTARP 327

Query: 643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRD 702
            PPG+  V ++ GK+ TLSWS P+DDGGCKIGNYIVEY R                    
Sbjct: 328 EPPGRVTVAISYGKTATLSWSAPDDDGGCKIGNYIVEYNR-------------------- 367

Query: 703 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI 762
              + W+                        W++A+   V      +S L  G +Y+FR+
Sbjct: 368 ---VGWD-----------------------VWLKAA--TVRQLTATLSDLIEGSQYRFRV 399

Query: 763 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRT 822
            AEN  G S+P   SE L V         P   R + D + ++ ++P          KR 
Sbjct: 400 KAENPYGVSDPSEESEVLFV---------PDPKRGITDASKMQAQQP-----STLPRKRR 445

Query: 823 FQSTSPM 829
             S SPM
Sbjct: 446 DLSQSPM 452

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003233|gb|EEZ99680.1| hypothetical protein TcasGA2_TC002437 [Tribolium castaneum]

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/430 (56%), Positives = 291/430 (67%), Gaps = 50/430 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PPGKP L  +   L  D+ TI W  P  DGGSP+ GYLVEHRRTGSP+WVRA+P +V 
Sbjct: 13  PSPPGKPHLSDND--LTPDLVTIVWSKPTRDGGSPITGYLVEHRRTGSPHWVRATPLLVP 70

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
             EL +SGLEPGWRYQFR+ AEN VG SEP  +SEPLTVT Q+    AP F   L D TA
Sbjct: 71  FPELTLSGLEPGWRYQFRVRAENAVGLSEPSDISEPLTVTLQKFAITAPKFTEELKDATA 130

Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
           LE+EKVEF V   G P PK+ W+KDGFEIFSSRR RI+T+ND S L IHQ+AL DEGEIK
Sbjct: 131 LENEKVEFVVHFLGQPAPKICWFKDGFEIFSSRRTRILTENDRSVLTIHQSALSDEGEIK 190

Query: 525 CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
           CTATN+AGH+ TKARL LEAPP+IRLP+QYEDGLLFE+GE+I+LKVS+AG P P   W H
Sbjct: 191 CTATNKAGHASTKARLSLEAPPSIRLPRQYEDGLLFEIGEVIRLKVSVAGRPTPLVFWSH 250

Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           +GE + +  RYEI + D+   L+I++A R DRGEYQ   VN +GED+ASFLVT+TD+P P
Sbjct: 251 DGESIQNNDRYEIEYVDKCSILKIAEATRGDRGEYQIKAVNKIGEDLASFLVTITDKPSP 310

Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
           PG+A+VVMTLG+SVTLSWS P+DDGGCKIGNYIVEY+R                      
Sbjct: 311 PGRARVVMTLGRSVTLSWSTPDDDGGCKIGNYIVEYYR---------------------- 348

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764
                          LG+ V         W++A+      T  ++  L  G  Y+FRI A
Sbjct: 349 ---------------LGWNV---------WLKAATSRQLTT--ILGDLIEGSEYKFRIKA 382

Query: 765 ENVVGFSEPG 774
           E+  G SEPG
Sbjct: 383 ESPYGISEPG 392

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080005|ref|XP_971454.1| PREDICTED: similar to AGAP007556-PA [Tribolium castaneum]

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/430 (56%), Positives = 290/430 (67%), Gaps = 50/430 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PPGKP L  +   L  D+ TI W  P  DGGSP+ GYLVEHRRTGSP+WVRA+P +V 
Sbjct: 26  PSPPGKPHLSDND--LTPDLVTIVWSKPTRDGGSPITGYLVEHRRTGSPHWVRATPLLVP 83

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
             EL +SGLEPGWRYQFR+ AEN VG SEP  +SEPLTVT Q+    AP F   L D TA
Sbjct: 84  FPELTLSGLEPGWRYQFRVRAENAVGLSEPSDISEPLTVTLQKFAITAPKFTEELKDATA 143

Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
           LE+EKVEF V   G P PK+ W+KDGFEIFSSRR RI+T+ND S L IHQ+AL DEGEIK
Sbjct: 144 LENEKVEFVVHFLGQPAPKICWFKDGFEIFSSRRTRILTENDRSVLTIHQSALSDEGEIK 203

Query: 525 CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
           CTATN+AGH+ TKARL LEAPP+IRLP+QYEDGLLFE+GE+I+LKVS+AG P P   W H
Sbjct: 204 CTATNKAGHASTKARLSLEAPPSIRLPRQYEDGLLFEIGEVIRLKVSVAGRPTPLVFWSH 263

Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           +GE + +  RYEI + D+   L+I++A R DRGEYQ   VN +GED+ASFLVT+TD+P P
Sbjct: 264 DGESIQNNDRYEIEYVDKCSILKIAEATRGDRGEYQIKAVNKIGEDLASFLVTITDKPSP 323

Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
           PG+A+VVMTLG+SVTLSWS P+DDGGCKIGNYIVEY+R                      
Sbjct: 324 PGRARVVMTLGRSVTLSWSTPDDDGGCKIGNYIVEYYR---------------------- 361

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764
                          LG+ V         W++A+         ++  L  G  Y+FRI A
Sbjct: 362 ---------------LGWNV---------WLKAA--TSRQLTTILGDLIEGSEYKFRIKA 395

Query: 765 ENVVGFSEPG 774
           E+  G SEPG
Sbjct: 396 ESPYGISEPG 405

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051182|ref|XP_001861649.1| titin [Culex quinquefasciatus] gi|167872526|gb|EDS35909.1| titin [Culex quinquefasciatus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/474 (51%), Positives = 312/474 (65%), Gaps = 58/474 (12%)

Query: 343 KPPGPPGKPQLLPDSP-SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           +PP PPGKP L+P +P S   D+ T+RW+ P  DGGSP+LGY+VEHRRTGSP+WVRA+  
Sbjct: 25  EPPSPPGKPMLVPGTPDSSAPDIVTLRWKRPTSDGGSPILGYIVEHRRTGSPHWVRATVV 84

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
           +++ TEL  SGLEPGWRYQFR+TA+N+VG S+   LS+ LTVT QR+  A P FI  L+D
Sbjct: 85  LIQATELSFSGLEPGWRYQFRVTAQNIVGQSDCSELSDALTVTLQRAAIAPPRFIYELND 144

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
           TTA+E+EK+EF V V G P P++SW+KDGFE+FSSRR +I+++ D S L+IHQAAL DEG
Sbjct: 145 TTAIENEKIEFRVSVAGTPAPQISWFKDGFEMFSSRRTKILSEGDFSVLVIHQAALTDEG 204

Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTAR 581
           EIKCTATN AG ++T   L ++A P IRLP+QYEDGL+ E  E+I+LKV +AG P P   
Sbjct: 205 EIKCTATNSAGSAVTICNLSIDAYPKIRLPRQYEDGLIIEADEVIRLKVGLAGQPTPIVE 264

Query: 582 WLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
           W HNGE LT+GGRYEI  +D+  +LRIS+A+R+DRGEY    +N LGED ASFLVTVT +
Sbjct: 265 WSHNGEVLTNGGRYEIETSDKNSSLRISNAQRSDRGEYNLRAINKLGEDYASFLVTVTAK 324

Query: 642 PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDR 701
           P PPGK  V M+LGKSVTLSW+EPEDDGGCKIGNYIVEY+R                   
Sbjct: 325 PEPPGKITVSMSLGKSVTLSWAEPEDDGGCKIGNYIVEYYR------------------- 365

Query: 702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 761
                             LG+ V         W++AS        + +SGL  G +Y+FR
Sbjct: 366 ------------------LGWDV---------WLKAS--TCRQLTITLSGLIEGSQYRFR 396

Query: 762 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNC 815
           + AEN  G SEP  +S+ + +         P   R ++  T + + K +    C
Sbjct: 397 VKAENPYGLSEPSDISDTVFI---------PDPKRGINSATQIPETKDKEDKEC 441

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380227|gb|EFR26287.1| hypothetical protein AND_07769 [Anopheles darlingi]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/449 (52%), Positives = 296/449 (65%), Gaps = 48/449 (10%)

Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP 393
           G D+  +I +PP PPGKP L+P +P+   DV TIRW  P  DGGSP+LGY+VE RRTGSP
Sbjct: 181 GVDVDQIIAQPPAPPGKPTLVPGTPTSAPDVVTIRWTRPATDGGSPILGYVVEQRRTGSP 240

Query: 394 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
           +WVRA P +V+ TEL +SGLEPGWRYQFR+ A+N+VG SE    S+PLTVT QR+  +AP
Sbjct: 241 HWVRACPSLVQYTELSLSGLEPGWRYQFRVMADNIVGRSECSEPSDPLTVTLQRNAISAP 300

Query: 454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
            F+  L D TA+E+EKVEF VQV G P P++SW+KDGFEI+SSRR RIVT+ D S L+IH
Sbjct: 301 RFVHELFDATAVENEKVEFRVQVAGTPVPQISWFKDGFEIYSSRRARIVTEADASVLVIH 360

Query: 514 QAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA 573
           Q AL DEGEIKC ATNRAGH++T+ +L ++A P IRLP+QYEDGL+ E  E+I+LKV++A
Sbjct: 361 QTALTDEGEIKCAATNRAGHTVTRCQLTIDAFPKIRLPRQYEDGLIIEAEELIRLKVALA 420

Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
           G PPP   W HNGE L + GR+EI  TD+   L+I ++ R DRGEY    +N LGED AS
Sbjct: 421 GRPPPMVEWSHNGEVLNNDGRHEIVTTDKNSTLKIMNSDRNDRGEYNIRAINKLGEDNAS 480

Query: 634 FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLL 693
           FLVTVT RP PP K  + ++ GK+VTLSWS PEDDGGCKIGNYIVEY+R           
Sbjct: 481 FLVTVTARPEPPRKVSIAISYGKTVTLSWSTPEDDGGCKIGNYIVEYYR----------- 529

Query: 694 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 753
                       + W+                        W++A+          +S L 
Sbjct: 530 ------------VGWD-----------------------VWLKAA--TCRQLTTTLSDLI 552

Query: 754 PGWRYQFRITAENVVGFSEPGPLSEPLTV 782
            G +Y+FR+ AEN  G S+P   SE L V
Sbjct: 553 EGSQYRFRVKAENPYGLSDPSEESELLFV 581

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022542|ref|XP_002431699.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517007|gb|EEB18961.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/436 (53%), Positives = 295/436 (67%), Gaps = 53/436 (12%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PPGKP L+P+  +   DV TIRW PP  DGG+P++GY+VEHRRTGSP+W+RA+PH+V 
Sbjct: 25  PTPPGKPFLIPEKNNKYTDVITIRWSPPLDDGGAPIIGYVVEHRRTGSPHWLRATPHLVI 84

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
           DTEL ++GLEPGWRYQFRI+AEN VG S+PG LSEPLTVT Q+S A+AP F   L D   
Sbjct: 85  DTELPLTGLEPGWRYQFRISAENEVGKSDPGELSEPLTVTPQKSAASAPFFNIELEDKIG 144

Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
           LE+EKVEF V V G+P+P +SWYKDGFEIFSSRR +I+T+ D ST IIHQAAL DEGEIK
Sbjct: 145 LENEKVEFKVHVIGVPSPSISWYKDGFEIFSSRRTKIITEEDYSTFIIHQAALEDEGEIK 204

Query: 525 CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
           CTATNRAGH++TKA L+L+APP IRLP+QYEDGL+F+MG+ I+LK++ AG P P   W H
Sbjct: 205 CTATNRAGHAVTKATLKLQAPPRIRLPRQYEDGLIFKMGDSIRLKITTAGRPKPEVNWYH 264

Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           NGE +    R +I +++    L+I +A R DRGEY   GVN +G+D ASFLVTVTDRPLP
Sbjct: 265 NGEMIEKNDRIDIVNSETGSMLKIDNACRNDRGEYVIVGVNKIGDDTASFLVTVTDRPLP 324

Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
           PG  +V +  GK+V L+W+ PEDDGGCKIG++I+EYFR                      
Sbjct: 325 PGNVRVTLE-GKNVNLTWTCPEDDGGCKIGSFIIEYFR---------------------- 361

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS--GLEPGWRYQFRI 762
            + W+                        W++A        +L V+   L  G +Y+FRI
Sbjct: 362 -VGWD-----------------------MWLKAK----NSRQLFVTLENLIEGSQYKFRI 393

Query: 763 TAENVVGFSEPGPLSE 778
            AEN  G S+P   SE
Sbjct: 394 RAENPYGMSDPSEESE 409

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422387|ref|XP_003493149.1| PREDICTED: hypothetical protein LOC100743398 [Bombus impatiens]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/450 (51%), Positives = 286/450 (63%), Gaps = 48/450 (10%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PPGKP L+P +     DV  IRWE    +GGS ++GYLVEHRR GS +WVR++P +  
Sbjct: 30  PAPPGKPILIPGADESQPDVVAIRWERSPSNGGSAIVGYLVEHRRLGSQHWVRSTPGLCT 89

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
             EL +SGLEPGWRYQFR+ A+N VG S P  +S+PLTVT QRS ++AP F   + DTT 
Sbjct: 90  FPELTLSGLEPGWRYQFRVRAQNAVGLSRPSEISDPLTVTLQRSASSAPHFDLEVKDTTV 149

Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
           LE+E+ EF V+  G P PK++W+KDGFEIFSSRR RI+TD+  S L+IHQ AL DEGEIK
Sbjct: 150 LENEQAEFVVRFTGSPLPKIAWFKDGFEIFSSRRTRIITDSGRSVLLIHQTALNDEGEIK 209

Query: 525 CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
           CTATNRAGH+ TKARL LEAPP IRLP+QYEDGLLFE  E I+LKVS+AG PP +  W H
Sbjct: 210 CTATNRAGHASTKARLILEAPPKIRLPRQYEDGLLFEQDETIRLKVSLAGRPPASVIWYH 269

Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           +GE ++S  R+     D    L+I DA+R DRGEY    +N LGED +SFLVTVTDRP  
Sbjct: 270 DGEVVSSDERHIFETMDGESILKIPDAKRIDRGEYTVKAINKLGEDTSSFLVTVTDRPAR 329

Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
           PGKA V MTLG+SVTLSW+EPEDDGGCKIG YIVEY+R                      
Sbjct: 330 PGKATVTMTLGRSVTLSWTEPEDDGGCKIGTYIVEYYR---------------------- 367

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764
            + W+                        W++A       T+  +S L  G  Y+FR+ A
Sbjct: 368 -VGWD-----------------------VWLKAITS--RQTKATLSELIEGSEYKFRVKA 401

Query: 765 ENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
           EN  G SEP   S+ + +   +    APS 
Sbjct: 402 ENPYGVSEPSEESDVIFIPDIKRGIMAPSL 431

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204648|gb|EFN83270.1| Myosin light chain kinase, smooth muscle [Harpegnathos saltator]

 Score =  454 bits (1169), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/432 (53%), Positives = 270/432 (62%), Gaps = 50/432 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PPGKP L+  +     DV  IRW+    +GGS ++GYLVEHRR GSPYW+R+S  +  
Sbjct: 30  PAPPGKPILISGTDDAQPDVVAIRWDRSPSNGGSAIVGYLVEHRRLGSPYWLRSSSGLCA 89

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS--PAAAPSFIRALHDT 462
             EL +SGLEPGWRYQFR+ A+N +G S+P  +SEPLTVT QR+   A AP F   L DT
Sbjct: 90  FPELTLSGLEPGWRYQFRVRAQNALGLSQPSEVSEPLTVTLQRASVAACAPRFDLELKDT 149

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
            ALE+E+ EF VQ  G P PK+SW+KDGFEIFSSRR RI+TDN  S L+IHQ AL DEGE
Sbjct: 150 VALENEQAEFAVQFIGTPLPKISWFKDGFEIFSSRRTRIITDNGKSVLLIHQTALNDEGE 209

Query: 523 IKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARW 582
           IKCTATNRAGH  TKARL LEA P IRLP+QYEDGLLFE  E I+LKVS+AG P P   W
Sbjct: 210 IKCTATNRAGHISTKARLILEASPRIRLPRQYEDGLLFEQDETIRLKVSLAGRPSPVVTW 269

Query: 583 LHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
            H+GE ++   R+     D    L+I DA+RADRGEY     N LGED ASFLVTVTDRP
Sbjct: 270 YHDGESMSKDARHVFEVMDGESVLKIPDAKRADRGEYSVKATNKLGEDAASFLVTVTDRP 329

Query: 643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRD 702
             PGK  V MTLG+SVTLSW EPEDDGGCKIG YIVEY+R                    
Sbjct: 330 AAPGKVAVAMTLGRSVTLSWKEPEDDGGCKIGTYIVEYYR-------------------- 369

Query: 703 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI 762
              I WE                        W++A       T   ++ L  G  Y+FR+
Sbjct: 370 ---IGWE-----------------------VWLKA--MTSRRTTATLTELIEGSEYKFRV 401

Query: 763 TAENVVGFSEPG 774
            AEN  G S+P 
Sbjct: 402 KAENPYGVSDPS 413

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109568|ref|XP_001650729.1| titin [Aedes aegypti] gi|108878993|gb|EAT43218.1| AAEL005334-PA [Aedes aegypti]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/431 (51%), Positives = 288/431 (66%), Gaps = 49/431 (11%)

Query: 353 LLPDSPSLDR-DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 411
           L+P +P+    DV T+RW+ P  DGGSP+LGY++EHRRTGSP+WVRAS  +++ TEL +S
Sbjct: 2   LVPGTPNNSAPDVVTLRWKRPTSDGGSPILGYIIEHRRTGSPHWVRASAQLIQATELSLS 61

Query: 412 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE 471
           GLEPGWRYQFR+TA+N+VG S+   LS+PLTVT QR+  A P F++ L+DTTA+E+EK+E
Sbjct: 62  GLEPGWRYQFRVTAQNIVGQSDCSELSDPLTVTLQRAAIAPPRFVQELYDTTAIENEKIE 121

Query: 472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531
           F V V G P P++ WYKDGFEIFSSRR +I+T+ D+S L+IHQAAL DEGE KCTATNRA
Sbjct: 122 FRVSVAGSPAPQIGWYKDGFEIFSSRRTKIITEADLSILVIHQAALTDEGEFKCTATNRA 181

Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS 591
           GH++T   L ++A P IRLP+QYE+GL+ E  E+I+LKV +AG P P   W HNGE + +
Sbjct: 182 GHAVTICSLSIDAYPKIRLPRQYEEGLIVEADEVIRLKVGVAGQPTPIVEWSHNGELIEN 241

Query: 592 GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
           GGRYEI   D+  +LRI++A+R+DRGEY     N LGED A FLVTVT +P PP K ++ 
Sbjct: 242 GGRYEIETNDKNSSLRIANAQRSDRGEYNLRAFNKLGEDYAYFLVTVTAKPEPPSKVQIS 301

Query: 652 MTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP 711
           + L K++TLSWS PEDDGGCKIGNYIVEY+R                       + W+  
Sbjct: 302 IGLSKAITLSWSAPEDDGGCKIGNYIVEYYR-----------------------VGWD-- 336

Query: 712 EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS 771
                                 W++A+          +SGL  G +Y+FR+ AEN  G S
Sbjct: 337 ---------------------VWLKAT--TCRQLTTTLSGLFEGSQYRFRVKAENPYGLS 373

Query: 772 EPGPLSEPLTV 782
           EP   S+ L +
Sbjct: 374 EPSEESDTLFI 384

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195440933|ref|XP_002068289.1| GK13215 [Drosophila willistoni] gi|194164374|gb|EDW79275.1| GK13215 [Drosophila willistoni]

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/441 (51%), Positives = 280/441 (63%), Gaps = 49/441 (11%)

Query: 343 KPPGPPGKPQLLPDSPSLDR-DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           K P PPG+P L P S +  + DV  +RWE P  DGGSP+ GY VEHRR GSP+WVRA+P 
Sbjct: 38  KRPSPPGRPILTPLSLTEQQPDVVNLRWERPLMDGGSPITGYTVEHRRMGSPHWVRATPT 97

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
            +   E+ +SGLEPGWRYQFR  AEN+VG S+   LS+PLTVT QR+    P FI  L D
Sbjct: 98  PISRCEVCISGLEPGWRYQFRCFAENIVGRSDASDLSDPLTVTLQRNAITVPRFIDELAD 157

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
           T A+EDE++EF V++ G P P+++W+KDG+EIFSSRR +IV +ND S LIIHQ AL DEG
Sbjct: 158 TNAVEDERIEFRVKILGEPPPEINWFKDGYEIFSSRRTKIVNENDASVLIIHQVALTDEG 217

Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTAR 581
           EIKCTATNRAGH +TKARL ++APP IRLP+ YEDGL+ E  E+++LKV +AG P P   
Sbjct: 218 EIKCTATNRAGHVVTKARLMVQAPPKIRLPRTYEDGLIVEADEVLRLKVGIAGQPLPVIT 277

Query: 582 WLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
           WLH GE +  GGR+EI++TD+   L+I +  R DRGEY     N LGED+ SFLVTVT R
Sbjct: 278 WLHEGEVIAPGGRFEISNTDKNSMLKIDNVLREDRGEYVVRAWNKLGEDITSFLVTVTAR 337

Query: 642 PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDR 701
           P PPG  K+ M+ GKS TLSW+ P DDGGCKIGNYIVEYFR                   
Sbjct: 338 PNPPGAPKLNMSFGKSATLSWTAPADDGGCKIGNYIVEYFR------------------- 378

Query: 702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 761
                             LG+ V         W++A+          +  L  G  Y+FR
Sbjct: 379 ------------------LGWNV---------WLKAA--TTRSLTATLHDLIEGSEYKFR 409

Query: 762 ITAENVVGFSEPGPLSEPLTV 782
           + AEN  G SEP   SE L +
Sbjct: 410 VKAENPYGLSEPSEESELLFI 430

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1101
FB|FBgn0035410	1427	CG14964 [Drosophila melanogast	0.295	0.227	0.603	8.6e-127
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.293	0.036	0.325	5.3e-49
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.290	11.42	0.325	3.7e-45
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.288	9.085	0.311	1.9e-43
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.289	9.114	0.309	4.5e-42
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.285	0.043	0.323	1.7e-41
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.289	9.382	0.306	2.8e-40
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.292	10.06	0.322	2.7e-39
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.289	9.382	0.303	1.4e-37
FB|FBgn0086906	18	sls "sallimus" [Drosophila mel	0.286	17.5	0.295	2.3e-34

FB|FBgn0035410 CG14964 [Drosophila melanogaster (taxid:7227)]

 Score = 1074 (383.1 bits), Expect = 8.6e-127, Sum P(4) = 8.6e-127
 Identities = 196/325 (60%), Positives = 243/325 (74%)

Query:   358 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGW 417
             P    DV  +RW+ P +DGGSP+ GY VEHRR GSP+WVRA+P  V+  ++ +SGLEPGW
Sbjct:    27 PEQQPDVVNLRWDRPLHDGGSPITGYTVEHRRMGSPHWVRATPTPVDRCDVCISGLEPGW 86

Query:   418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
             RYQFR  AEN+VG S+   LS+PLTVT QR+    P FI  L DT A+EDE++EF V++ 
Sbjct:    87 RYQFRCFAENIVGRSDASELSDPLTVTLQRNAITVPRFIDELVDTNAVEDERIEFRVRIL 146

Query:   478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
             G P P+++W+KDG+EIFSSRR +IV DN+ S L+IHQ AL DEGEIKCTATNRAGH ITK
Sbjct:   147 GEPPPEINWFKDGYEIFSSRRTKIVNDNEASVLVIHQVALTDEGEIKCTATNRAGHVITK 206

Query:   538 ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI 597
             ARL ++APP IRLP+ YEDGL+ E  E+++LKV +AG PPP   WLH GE +  GGR+E+
Sbjct:   207 ARLMVQAPPKIRLPRTYEDGLIVEADEVLRLKVGVAGQPPPAITWLHEGEVIAPGGRFEV 266

Query:   598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKS 657
             ++T++   L+I +  R DRGEY     N LGED  SFLVTVT RP PPG  K+ M+ GKS
Sbjct:   267 SNTEKNSLLKIDNVLREDRGEYMVKAWNRLGEDSTSFLVTVTARPNPPGTPKLNMSFGKS 326

Query:   658 VTLSWSEPEDDGGCKIGNYIVEYFR 682
              TLSW+ P DDGGCKIGNYIVEYFR
Sbjct:   327 ATLSWTAPLDDGGCKIGNYIVEYFR 351

GO:0017022 "myosin binding" evidence=ISS

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 512 (185.3 bits), Expect = 5.3e-49, Sum P(4) = 5.3e-49
 Identities = 107/329 (32%), Positives = 168/329 (51%)

Query:   355 PDSPSLDR---DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 411
             P SP +     D   + WE PE DGG+ + GY ++ R  GS  W R +  +    ++   
Sbjct:  7548 PGSPQITEIGGDFVHLEWEKPESDGGAHIQGYWIDKREVGSNTWQRVNATICAANQINCI 7607

Query:   412 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE 471
              L  G +Y+FRI A+NV G S     S+ + +   ++ A+ P  ++ L D   +++   +
Sbjct:  7608 NLIEGRQYEFRIFAQNVAGLSTESSASQAVKIIDPQA-ASPPLIVKPLRDANCIQNHNAQ 7666

Query:   472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531
             FT  + G+P P +SWYK   EI +  R  + ++ D   L I+     D  E  C A N+A
Sbjct:  7667 FTCTINGVPKPTISWYKGAREISNGARYHMYSEGDNHFLNINDVFGEDADEYVCRAVNKA 7726

Query:   532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS 591
             G   T+A L +   P + +P ++ D   F+ GE + +K+   G P P   W+ +GE + S
Sbjct:  7727 GAKSTRATLAIMTAPKLNVPPRFRDTAYFDKGENVVIKIPFTGFPKPRIHWVRDGENIES 7786

Query:   592 GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
             GG Y +   +R+  L I D    D G Y+    N LG D A   V ++DRP PP +  ++
Sbjct:  7787 GGHYTVEVKERHAVLIIRDGSHLDSGPYRITAENELGSDTAIIQVQISDRPDPP-RFPLI 7845

Query:   652 MTLG-KSVTLSWSEPEDDGGCKIGNYIVE 679
              ++G +S++LSW  P  DG   I NY VE
Sbjct:  7846 ESIGTESLSLSWKAPVWDGCSDITNYYVE 7874

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 3.7e-45, Sum P(6) = 3.7e-45
 Identities = 106/326 (32%), Positives = 156/326 (47%)

Query:   356 DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP 415
             D+ ++ RD  TI WE P  DGG PVLGY +E+R++G   W + +    +D +    GL+ 
Sbjct: 26060 DTMTVTRDYITINWEAPSCDGGKPVLGYWIEYRKSGDSAWKKCNKERTKDKQYTQGGLQE 26119

Query:   416 GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ 475
                Y+FR+ AEN  G S P   +  +    + S    P+  + + + TA   +      Q
Sbjct: 26120 ATEYEFRVFAENETGISRPRRTATGIKT--KLSAGTKPALRKEMDEVTAKLGQTATLKCQ 26177

Query:   476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
             + G P P++ WYK G EI   R+    +D    TL I      DEG   C A N AG   
Sbjct: 26178 IIGRPVPEIKWYKGGKEIKEGRKYAATSDGRNHTLTISTDQQEDEGLYTCKAVNEAGECE 26237

Query:   536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
             T   L LEA P   +P   +D +    G  +++ V   G P P   WL+  + L      
Sbjct: 26238 TSGALVLEAAPLFPVP--LKDKIFATCGSTVRIHVVYIGRPQPKIMWLYGTKALEPSENV 26295

Query:   596 EITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPGKAKVVMT 653
              I +T++Y +L + +  RR + G+Y+    N  G       V + D+P +P G   +   
Sbjct: 26296 IIENTEQYTHLILKNVQRRINGGKYRIRINNHFGAADTVTQVEILDKPAMPEGPLVLDAL 26355

Query:   654 LGKSVTLSWSEPEDDGGCKIGNYIVE 679
             L  SV +SW  P+DDGG  I NYIVE
Sbjct: 26356 LKNSVIISWKAPKDDGGSMITNYIVE 26381

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 459 (166.6 bits), Expect = 1.9e-43, Sum P(4) = 1.9e-43
 Identities = 101/324 (31%), Positives = 162/324 (50%)

Query:   359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
             S+ +D  T++WE PE DGG  +LGY VE+R++G   W +++   ++D +  + GL     
Sbjct: 32182 SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSNKDRIKDRQFTIGGLLESTE 32241

Query:   419 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
             Y+FR+ AEN  G S P   +  +++  + +   AP   + + D T    E  + + Q+ G
Sbjct: 32242 YEFRVFAENETGLSRPRRTA--MSIRTKLTSGEAPGVRKEMKDVTTKLGEAAQLSCQIVG 32299

Query:   479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
              P P + WY+ G E+  SR+ ++ +D    TL +      DEG   C ATN  G   T +
Sbjct: 32300 RPLPDIKWYRFGKELVQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 32359

Query:   539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
             +L L+A P        ++     +G  ++L V   G P P+  W +  + L +     I 
Sbjct: 32360 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPSITWFYGQKLLQNSENITIE 32419

Query:   599 HTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFL-VTVTDRP-LPPGKAKVVMTLG 655
             +T+ Y +L + +  R+   G+Y+    N  G  V S L V + D+P  P G   +   L 
Sbjct: 32420 NTEHYTHLVMKNVQRKTHAGKYKVQLSNIFGT-VDSILDVEIQDKPDKPTGPLVIEALLK 32478

Query:   656 KSVTLSWSEPEDDGGCKIGNYIVE 679
              SV +SW  P DDGG  I NY+VE
Sbjct: 32479 NSVVISWKPPADDGGSWITNYVVE 32502

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 470 (170.5 bits), Expect = 4.5e-42, Sum P(5) = 4.5e-42
 Identities = 100/323 (30%), Positives = 162/323 (50%)

Query:   359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
             S+ +D  T++WE PE DGG  +LGY VE+R++G   W +++   ++D +  + GL     
Sbjct: 32230 SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSNKERIKDRQFTIGGLLEATE 32289

Query:   419 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
             Y+FR+ AEN  G S P   +  ++V  + +   AP   + + D T    E  + + Q+ G
Sbjct: 32290 YEFRVFAENETGLSRPRRTA--MSVKTKLTSGEAPGVRKEMADVTTKLGEAAQLSCQIVG 32347

Query:   479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
              P P + WY+ G E+  SR+ ++ +D    TL +      DEG   C ATN  G   + +
Sbjct: 32348 RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTDEQEDEGVYTCVATNEVGEVESSS 32407

Query:   539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
             +L L+A P        ++     +G  ++L V   G P P   W H  + L +  +  I 
Sbjct: 32408 KLLLQAAPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEKITIE 32467

Query:   599 HTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPGKAKVVMTLGK 656
             +T+ Y +L + +  R+   G+Y+    N+ G   A+  V + D+P  P G   +   L  
Sbjct: 32468 NTEHYTHLVMKNVQRKTHAGKYKVQLSNAFGTVDATLDVEIQDKPDKPTGPIVIEALLKN 32527

Query:   657 SVTLSWSEPEDDGGCKIGNYIVE 679
             SV +SW  P DDGG  I NY+VE
Sbjct: 32528 SVVISWKPPADDGGSWITNYVVE 32550

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 461 (167.3 bits), Expect = 1.7e-41, Sum P(5) = 1.7e-41
 Identities = 103/318 (32%), Positives = 155/318 (48%)

Query:   363 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 422
             D  T+ W+ P  DGG  + GY+VE +      W R + +        V  L  G +Y++R
Sbjct:  5835 DYVTLSWQRPLSDGGGRLRGYIVEKQEEEHDEWFRCNQNPSPPNNYNVPNLIDGRKYRYR 5894

Query:   423 ITAENVVGFSEPGPLSEPLTVTYQRSPAA-APSFIRALHDTTALEDEKVEFTVQVEGIPT 481
             + A N  G S+   L + L   +Q S +   P  +  L D        V F  ++ G P 
Sbjct:  5895 VFAVNDAGLSDLAELDQTL---FQASGSGEGPKIVSPLSDLNEEVGRCVTFECEISGSPR 5951

Query:   482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
             P+  W+K   E+  + +  ++   D   LII+     D  E  C ATN +G   T+A LR
Sbjct:  5952 PEYRWFKGCKELVDTSKYTLINKGDKQVLIINDLTSDDADEYTCRATNSSGTRSTRANLR 6011

Query:   542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
             ++  P + +P +Y  G   + GE I+LK+     P   ARW  +GE + +  ++ IT  D
Sbjct:  6012 IKTKPRVFIPPKYHGGYEAQKGETIELKIPYKAYPQGEARWTKDGEKIENNSKFSITTDD 6071

Query:   602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
             ++  LRIS+A R D GEY+    NS+G D  +  VTV D P PP    +   L ++V LS
Sbjct:  6072 KFATLRISNASREDYGEYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILS 6131

Query:   662 WSEPEDDGGCKIGNYIVE 679
             W  P  DGG  + NY +E
Sbjct:  6132 WKPPALDGGSLVTNYTIE 6149

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
 Identities = 99/323 (30%), Positives = 158/323 (48%)

Query:   359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
             S+ +D  T++WE PE DGG  +LGY VE+R++G   W +++   ++D +  + GL     
Sbjct: 31368 SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSNKERIKDKQFTIGGLLEATE 31427

Query:   419 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
             Y+FR+ AEN  G S P   +  +++  + +   AP   + + D T    E  + + Q+ G
Sbjct: 31428 YEFRVFAENETGLSRPRRTA--MSIKTKLTSGEAPGIRKEMKDVTTKLGEAAQLSCQIVG 31485

Query:   479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
              P P + WY+ G E+  SR+ ++ +D    TL +      DEG   C ATN  G   T +
Sbjct: 31486 RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSS 31545

Query:   539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
             +L L+A P        ++     +G  ++L V   G P P   W H  + L +     I 
Sbjct: 31546 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE 31605

Query:   599 HTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPGKAKVVMTLGK 656
             +T+ Y +L + +  R+   G+Y+    N  G   A   V + D+P  P G   +   L  
Sbjct: 31606 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDKPDKPTGPIVIEALLKN 31665

Query:   657 SVTLSWSEPEDDGGCKIGNYIVE 679
             S  +SW  P DDGG  I NY+VE
Sbjct: 31666 SAVISWKPPADDGGSWITNYVVE 31688

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 443 (161.0 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
 Identities = 105/326 (32%), Positives = 152/326 (46%)

Query:   356 DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP 415
             D  S+ +D  TI W  PE DGG  +LGY +E R+ G   W + +    +D +  + GL  
Sbjct: 30071 DIISITKDSITIHWLRPESDGGKEILGYWIEFRQAGESAWKKCNKERSKDRQFTIGGLME 30130

Query:   416 GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ 475
                Y+FR+ AEN  G S P   +  + +  + S   AP     + DTT    E    T Q
Sbjct: 30131 ATEYEFRVFAENETGLSRPRRTA--MGIKTKLSVGEAPCLKEDIKDTTTKLGESGILTCQ 30188

Query:   476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
             + G P P++ WY+ G E+  SR+ ++ +D    +L +      DEG   C A N AG   
Sbjct: 30189 IIGRPLPEIKWYRYGKELIQSRKYKMSSDGRNHSLSVMTDEQEDEGLYTCRAVNEAGEIE 30248

Query:   536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
             T  +L L+A P        ++      G  ++L V   G P P   W +  +PL      
Sbjct: 30249 TSGKLLLQAAPQFHPGFPLKEKYYAGCGTSLRLHVVYIGRPIPQIMWFYGKKPLNPSENV 30308

Query:   596 EITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRPL-PPGKAKVVMT 653
              I +T+ Y +L I +  R+ + G Y+    N  G       V + D+PL P G   V   
Sbjct: 30309 IIENTESYTHLVIRNVQRKTNAGRYKVQLSNKFGTVDTVLRVEIQDKPLLPEGPVVVDAL 30368

Query:   654 LGKSVTLSWSEPEDDGGCKIGNYIVE 679
             L  SV +SW  P+DDGG  I NYIVE
Sbjct: 30369 LKSSVIISWKPPKDDGGSMITNYIVE 30394

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 452 (164.2 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
 Identities = 98/323 (30%), Positives = 158/323 (48%)

Query:   359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
             S+ +D  T++WE PE DGG  +LGY VE+R++G   W ++S   ++D +  + GL     
Sbjct: 31384 SISKDSVTLQWEKPECDGGKEILGYWVEYRQSGDSAWKKSSKDRIKDRQFTIGGLLEATE 31443

Query:   419 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
             Y+FR+ AEN  G S P   +  ++V  + +   AP   + + D T    E  + + Q+ G
Sbjct: 31444 YEFRVFAENETGLSRPRRTA--MSVKTKLTSGEAPGVRKEMKDVTTKLGEAAQLSCQIVG 31501

Query:   479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
              P P + W++ G E+  SR+ ++ +D    TL +      DEG   C ATN  G   + +
Sbjct: 31502 RPLPDIKWFRFGKELVQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCVATNEVGEVESSS 31561

Query:   539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
             +L L+A P        ++     +G  +++ V   G P P   W    + L +     I 
Sbjct: 31562 KLLLQATPQFHPGYPLKEKYYGAVGSTLRIHVMYIGRPVPAITWFRGQKLLQNSENITIE 31621

Query:   599 HTDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPGKAKVVMTLGK 656
             +T+ Y +L + +  R+   G+Y+    N LG       V + D+P  P G   +   L  
Sbjct: 31622 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVLGTVDTMLDVEIQDKPDKPTGPIVIEALLKN 31681

Query:   657 SVTLSWSEPEDDGGCKIGNYIVE 679
             SV +SW  P DDGG  I NY+VE
Sbjct: 31682 SVVISWKPPADDGGSWITNYVVE 31704

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
 Identities = 97/328 (29%), Positives = 146/328 (44%)

Query:   355 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 414
             P    +  D  T+ W+ PE DG S ++ Y++E++      W       ++DT   +S L+
Sbjct: 17378 PQPLEIMHDSITLYWKAPEDDGKSEIIEYILEYQDVKEEKWTEI--RKIKDTTYTISKLK 17435

Query:   415 PGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTV 474
                 Y FR  A N VG S P PLS P+ +   +    APS    L D  +  D++V  + 
Sbjct: 17436 IDTEYVFRSIAVNEVGPSPPSPLSPPIRLV-PKVETKAPSVQEPLQDVVSELDKEVTLSC 17494

Query:   475 QVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS 534
                GIP PKV+W K+G ++F SR  R   +N ++   I +  +  E    C ATN  G +
Sbjct: 17495 VFGGIPEPKVTWKKNG-QVFESRSIRY--ENRVAKYTIEKTTIETEATYTCVATNEKGSA 17551

Query:   535 ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNG---EPLTS 591
              T  RL+L+  P + +  +Y    L   G I+ +  ++ G P PT  W H     +  T 
Sbjct: 17552 ETSCRLKLQQKPVLEVEDKYLTQKL-RTGSILTIPATVRGYPQPTVTW-HKETIEQKTTK 17609

Query:   592 GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
                 E T T       +    R   G+Y+    N  G       V V D+P  P   ++ 
Sbjct: 17610 SVTIETTETTS--TYTVKKVTREQSGKYKVTATNESGTTYVECTVQVIDKPSRPQSLEIK 17667

Query:   652 MTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
                  S+ L W+ P DDGG  I  Y +E
Sbjct: 17668 DIKKDSIVLEWTPPVDDGGLDIEKYTLE 17695

GO:0030017 "sarcomere" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0004687 "myosin light chain kinase activity" evidence=ISS

GO:0003779 "actin binding" evidence=IMP;IDA

GO:0030018 "Z disc" evidence=IMP;IDA

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IGI;IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007517 "muscle organ development" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1101
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-24
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-20
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-20
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-14
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	6e-13
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	6e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-12
smart00409	85	smart00409, IG, Immunoglobulin	1e-12
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-10
smart00409	85	smart00409, IG, Immunoglobulin	2e-10
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-09
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-09
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-07
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	5e-07
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-06
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	1e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	1e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-06
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-06
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	6e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	7e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-05
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-05
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	4e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	9e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	9e-05
cd05865	96	cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-lik	2e-04
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	2e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-04
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	3e-04
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	4e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	5e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	7e-04
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.001
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	0.001
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.001
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.002
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.003
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.003
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	0.003
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.003
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.004
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.004
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 34/88 (38%), Positives = 42/88 (47%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P F +   D    E E   FT  V G P P VSW+KDG  + SS R ++  +    TL I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARL 540
                 DEG+  C ATN AG +   A L
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 85.6 bits (212), Expect = 5e-20
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PP   ++   +        T+ W PPE DGG P+ GY+VE+R  GS  W         
Sbjct: 1   PSPPTNLRVTDVTS----TSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGS 55

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           +T   ++GL+PG  Y+FR+ A N  G S P   SE +TVT
Sbjct: 56  ETSYTLTGLKPGTEYEFRVRAVNGGGESPP---SESVTVT 92

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 85.6 bits (212), Expect = 5e-20
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P PP   ++   +        T+ W PPE DGG P+ GY+VE+R  GS  W         
Sbjct: 1   PSPPTNLRVTDVTS----TSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGS 55

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           +T   ++GL+PG  Y+FR+ A N  G S P   SE +TVT
Sbjct: 56  ETSYTLTGLKPGTEYEFRVRAVNGGGESPP---SESVTVT 92

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 27/76 (35%), Positives = 40/76 (52%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +   ++ G P PT  W  +G+PL S  R+++T+      L IS+ +  D G+Y   
Sbjct: 15  GESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCV 74

Query: 623 GVNSLGEDVASFLVTV 638
             NS GE  AS  +TV
Sbjct: 75  ATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMV 403
           P PP   ++   +        T+ WEPP  DG    ++GY VE+R  GS  W   +    
Sbjct: 1   PSPPSNLRVTDVTS----TSVTLSWEPPPDDGITGYIVGYRVEYREEGSE-WKEVNVT-P 54

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFS 432
             T   ++GL+PG  Y+FR+ A N  G  
Sbjct: 55  SSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMV 742
           P PP   ++   +        T+ WEPP  DG    ++GY VE+R  GS  W   +    
Sbjct: 1   PSPPSNLRVTDVTS----TSVTLSWEPPPDDGITGYIVGYRVEYREEGSE-WKEVNVT-P 54

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFS 771
             T   ++GL+PG  Y+FR+ A N  G  
Sbjct: 55  SSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE-IFSSRRQRIVTDNDISTLIIHQAALMD 519
             T  E E V  + +  G P P+V+WYK G + +  S R  +      STL I      D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 520 EGEIKCTATNRAGHSITKARLR 541
            G   C ATN +G + +   L 
Sbjct: 63  SGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE-IFSSRRQRIVTDNDISTLIIHQAALMD 519
             T  E E V  + +  G P P+V+WYK G + +  S R  +      STL I      D
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62

Query: 520 EGEIKCTATNRAGHSITKARLR 541
            G   C ATN +G + +   L 
Sbjct: 63  SGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           ++L+V ++G P PT  W  +G+PL   GR +I  T    +L I +A R+D G+Y     N
Sbjct: 2   VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKN 61

Query: 626 SLGEDVASFLVTV 638
             GE  A+  V V
Sbjct: 62  PAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEI----FSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
           V  T    G P P ++W K+G  +     +  R    T +  STL I    L D G   C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 526 TATNRAGHSITKAR 539
            A+N AG       
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNG-EPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           GE + L    +G PPP   W   G + L   GR+ ++ +     L IS+    D G Y  
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 622 HGVNSLGEDVASFLVTV 638
              NS G   +   +TV
Sbjct: 69  AATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNG-EPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           GE + L    +G PPP   W   G + L   GR+ ++ +     L IS+    D G Y  
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 622 HGVNSLGEDVASFLVTV 638
              NS G   +   +TV
Sbjct: 69  AATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHM 402
             P    +   +        T+ W PP   G  P+ GY VE+R          +      
Sbjct: 1   SAPTNLTVTDVTS----TSLTLSWSPPP--GNGPITGYEVEYRPVNGGEEWKEITVPGT- 53

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
              T   ++GL+PG  Y+ R+ A N  G   P
Sbjct: 54  --TTSYTLTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHM 741
             P    +   +        T+ W PP   G  P+ GY VE+R          +      
Sbjct: 1   SAPTNLTVTDVTS----TSLTLSWSPPP--GNGPITGYEVEYRPVNGGEEWKEITVPGT- 53

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
              T   ++GL+PG  Y+ R+ A N  G   P
Sbjct: 54  --TTSYTLTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
           E + V  T   EG P P ++W KDG  +      R V     STL I   +L D G   C
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPL--PESNRFVASG--STLTIKSVSLEDSGLYTC 56

Query: 526 TATNRAG 532
            A N AG
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 29/65 (44%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 478 GIPTPKVSWYKDGFEI-FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
           G P P VSW KDG  +   + R RIV D +   L+I +A   DEG  KC ATN  G   +
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDGN---LLIAEARKSDEGTYKCVATNMVGERES 79

Query: 537 K-ARL 540
             ARL
Sbjct: 80  AAARL 84

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
            V   V + G PTP V+W KDG  +  S R +I T    ++L+I  A   D G+   T  
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 529 NRAG 532
           N AG
Sbjct: 61  NPAG 64

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
            G+ + L     G P P   WL +G+PL    R     +     L I      D G Y  
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNR--FVASGST--LTIKSVSLEDSGLYTC 56

Query: 622 HGVNSLG 628
              NS G
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
           VEF  +V G P P V W K+  E+    R  I+ D    +L I      DEG   C A N
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGEL-PKGRAEILDDK---SLKIRNVTAGDEGSYTCEAEN 56

Query: 530 RAGHSITKARLR 541
             G     A L 
Sbjct: 57  MVGKIEASASLT 68

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQA 621
           G  ++L V ++G P PT  W    +  T   GR  +       +  I  A R D G Y  
Sbjct: 10  GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTI 69

Query: 622 HGVNSLGEDVASFLVTV 638
              N +GED AS  V V
Sbjct: 70  TVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 20/80 (25%), Positives = 29/80 (36%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
            T   E          EG P PKV W   G  +  +R   + T  DI  L +       +
Sbjct: 9   ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQ 68

Query: 521 GEIKCTATNRAGHSITKARL 540
             + CTA N  G +    ++
Sbjct: 69  TTVTCTAENPVGQANVSVQV 88

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
           E VEFT    G+PTP ++W  +   +  S R  I ++    TL I      D+G   C A
Sbjct: 2   ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEA 61

Query: 528 TNRAG 532
            N  G
Sbjct: 62  INTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 24/75 (32%), Positives = 36/75 (48%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +    + G P PT  W+  G+ + S  R++IT T+      IS  + +D G Y   
Sbjct: 18  GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVV 77

Query: 623 GVNSLGEDVASFLVT 637
             NS G+  A F +T
Sbjct: 78  VENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
            F+    D  A+    V      EG P PK+ W KDG  +     +R     + S LI  
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 514 ----QAALMDEGEIKCTATNRAGHSITKARLRLEA 544
               +    DEG  +C A N +  SI     RL  
Sbjct: 61  VVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG---H 533
           EG+PTP++SW K G E+ +    R   +N   TL I   +  D+GE +CTA+N  G   H
Sbjct: 8   EGLPTPEISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64

Query: 534 SIT 536
           +I+
Sbjct: 65  TIS 67

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
           E + V+F  + +G P P ++W K G ++   RR  +++     TL I + AL D+G+ +C
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYEC 57

Query: 526 TATNRAGHSITKARL 540
            A N  G   T A+L
Sbjct: 58  QAVNIVGSQRTVAQL 72

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN----LRISDARRADRGEYQA 621
           + L    +G PPPT  WL NG+PL S     +  +    +    L IS+    D G Y  
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 622 HGVNSLGEDVASF 634
              NS G   AS 
Sbjct: 61  VASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 453 PSFIRALHDT---TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           P  IRA       TA   + V      +G P P ++W KDG E   S  ++   + D S 
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIESGEEKYSFNEDGSE 59

Query: 510 LIIHQAALMDEGEIKCTATNRAGHS 534
           + I     +DE E  C A N+AG  
Sbjct: 60  MTILDVDKLDEAEYTCIAENKAGEQ 84

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 477 EGIPTPKVSWYKDGFEIFSSRRQR---IVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
            G PTP+++W KDG   F + R+R   ++ ++D+    I    + D G   CTA N AG 
Sbjct: 8   TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDV--FFIVDVKIEDTGVYSCTAQNTAGS 65

Query: 534 SITKARL 540
               A L
Sbjct: 66  ISANATL 72

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
           + F  +V G PTP V W K+G  +  S   +IV ++++  L + ++   DEG  +C A N
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKS---DEGFYQCIAEN 58

Query: 530 RAGHSITKARL 540
             G+    A+L
Sbjct: 59  DVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
           T  E E   F+  V+G P P V+W ++G  I SS+R +I +    ST  I +  + DEG 
Sbjct: 14  TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGN 73

Query: 523 IKCTATNRAG 532
                 N  G
Sbjct: 74  YTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ----RIVTDNDI--ST 509
           I  L + TA+E E++  T + EG P P+++W +     FS   +    RIV       S+
Sbjct: 5   ITYLENQTAVELEQITLTCEAEGDPIPEITW-RRATRNFSEGDKSLDGRIVVRGHARVSS 63

Query: 510 LIIHQAALMDEGEIKCTATNRAG 532
           L +    L D G   C A+NR G
Sbjct: 64  LTLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
           +G P P  RWL NG+PL S  R E+   D    LRI+    +D G YQ    N  G   A
Sbjct: 24  SGNPRPAYRWLKNGQPLASENRIEVEAGD----LRITKLSLSDSGMYQCVAENKHGTIYA 79

Query: 633 SFLVTV 638
           S  + V
Sbjct: 80  SAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
           PPTIR  +Q E      +G+ + L     G P PT  W  +GEP+ SG      + D   
Sbjct: 1   PPTIRA-RQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGS- 58

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
            + I D  + D  EY     N  GE  A   + V
Sbjct: 59  EMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATN 529
           F  QV G P   +SW+    E   +++Q  V  ND   STL I+ A + D G  KC AT+
Sbjct: 20  FLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78

Query: 530 RAG 532
             G
Sbjct: 79  AKG 81

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 456 IRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
           I      +      V  T   EG P  P +SWY++G    S         +  STL +  
Sbjct: 4   ITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNG----SISGGSGGLGSSGSTLTLSS 59

Query: 515 AALMDEGEIKCTATN 529
               D G   C A+N
Sbjct: 60  VTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
           V+     +G P P ++W KDG ++  S +  I  +     L I    + D+G  +C A N
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARN 57

Query: 530 RAGHSITKARL 540
             G++     L
Sbjct: 58  TIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 480 PTPKVSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
           P+ +  W+KDG E+    + R +        S L I++A L D GE  C   N  G+   
Sbjct: 12  PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71

Query: 537 KARL 540
            A +
Sbjct: 72  TANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143273 cd05865, Ig1_NCAM-1, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTA 527
           F  QV G    K +SW+    E  +  +QRI     D+  STL I+ A + D G  KC  
Sbjct: 20  FLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79

Query: 528 TNRAG 532
           +N   
Sbjct: 80  SNEDE 84

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 96

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 43/93 (46%)

Query: 553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR 612
           Q+ + +    GE ++L   + G  P T  W+   + +  G   +I +T+    L I++ +
Sbjct: 5   QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQ 64

Query: 613 RADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           +   G Y     N LG   A   +TV D+P PP
Sbjct: 65  QEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
            EGIP P+++W K+G +I     +++    + S L I      D G   C A N AG
Sbjct: 7   AEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSW-YKDGF-EIFSSRRQRIVTDND-- 506
            P  I +     A+  +K      +   P P ++ W +K+   E  SS R  + TD    
Sbjct: 1   GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPG 60

Query: 507 --ISTLIIHQAALMD-EGEIKCTATNRAGHSITKARLR 541
             +STL I      D +    CTA N  G       L 
Sbjct: 61  GVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISLE 98

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 453 PSFIRALHD---TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDI 507
           P F++   D    T  +++KV    +  G P P   W ++G EI   S  R  ++     
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID---- 57

Query: 508 STLIIHQAALM-DEGEIKCTATNRAG 532
             LII   + + D G  +C ATN  G
Sbjct: 58  GNLIISNPSEVKDSGRYQCLATNSIG 83

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 469 KVEFTVQVEGIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT 526
           K+   V + G P P V+W + G + F  +  R R+ +  D+S+ +I  A   DEG    T
Sbjct: 12  KLRLDVPISGEPAPTVTWSR-GDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTIT 70

Query: 527 ATNRAG 532
            TN  G
Sbjct: 71  VTNPVG 76

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
             P PT  W    E LT+  R  I   D   +L I +  ++D G+Y     N  G
Sbjct: 12  AAPKPTISWSKGTELLTNSSRICIW-PDG--SLEILNVTKSDEGKYTCFAENFFG 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQA 621
           G  ++LK   +G P PT  WL +G+P     R        +   L +     +D G+Y  
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 622 HGVNSLGEDVASFLVTV 638
              N  G    ++ V V
Sbjct: 69  IVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 574 GMPPPTARWLHNGEPLTSGG-RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629
           G P PT  W  +G+PL     R  I       NL I++AR++D G Y+    N +GE
Sbjct: 23  GHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGE 76

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 19/66 (28%), Positives = 28/66 (42%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE ++      G+P P   W  N   +    R  IT    Y  L I D + +D+G Y   
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 623 GVNSLG 628
            +N+ G
Sbjct: 61  AINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDIS-TLIIHQAALMDEGEIKCTA 527
           V+   Q+  IP PK+ W ++   + +++ R  +  DN    TL+I      D G    +A
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA 60

Query: 528 TNRAGHSITKARL 540
            N AG +   ARL
Sbjct: 61  VNEAGVATCHARL 73

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDN-DISTLIIHQAALMDEGEIKCTA 527
           V    +V  IP P++ W K+   + +++ R  +  DN     L+I  A   D G    +A
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 528 TNRAGHSITKARL 540
            N AG     ARL
Sbjct: 61  VNEAGVVSCNARL 73

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 468 EKVEFTVQVEGIPTPKVSWYK--DGFEIFSSR----RQRIVTDNDISTLIIHQAALMDEG 521
           E   F   V G P P+++W K   G E    R    R  +V  N I  L+I+ A   D G
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN-IGQLVIYNAQPQDAG 60

Query: 522 EIKCTATNRAG 532
              CTA N  G
Sbjct: 61  LYTCTARNSGG 71

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
           ++L V +   PPP  +W  NG+ ++   R        + +L I D    D G Y
Sbjct: 1   VRLPVKVKAYPPPEIQWYKNGKLISEKNRT---KKSGH-SLTIKDVTEEDAGNY 50

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
           +  P P +SW K    + +S R  I  D    +L I      DEG+  C A N  G
Sbjct: 11  KAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFG 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 456 IRALHDTTALE-DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ----RIVTDNDI--S 508
           I  + + TA+E +E++  T +  G P P ++W +      SS  +     IV  +    S
Sbjct: 5   ITYVENQTAMELEEQITLTCEASGDPIPSITW-RTSTRNISSEEKTLDGHIVVRSHARVS 63

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSI 535
           +L +      D GE  CTA+N  G   
Sbjct: 64  SLTLKYIQYTDAGEYLCTASNTIGQDS 90

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 573 AGMPPPTARWLHNGEPLTSGGRYE---ITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629
           +  P    +W  +G+ L    +     I +  +   L+I+ A+ AD GEY     N LG 
Sbjct: 9   SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68

Query: 630 DVAS 633
           D  +
Sbjct: 69  DTVT 72

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
           L+    G+P P   WL NG  +T     ++T       L IS+ R  D G Y     N  
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 628 G--EDVASFLV 636
           G  ED++S  V
Sbjct: 63  GVDEDISSLFV 73

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTA 527
            V       G P P ++W KDG       R           TLI+      D G+  C  
Sbjct: 11  TVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV 70

Query: 528 TNRAGH 533
            N+ G 
Sbjct: 71  ENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLT-SGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
           + L+  + G P PT +W  +G PL+   G Y ++  +R L LR   A   D G Y     
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLR--SAGPDDSGLYYCCAH 58

Query: 625 NSLGEDVAS--FLVTVTD 640
           N+ G   +S  F +++ D
Sbjct: 59  NAFGSVCSSQNFTLSIID 76

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+ +       G P P   W   G  L+   R+ +  +     LRIS     D+G+Y+  
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQ 58

Query: 623 GVNSLGEDVASFLVTV 638
            VN +G       +TV
Sbjct: 59  AVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
           T   E E V  T    G P P  +WYKDG  + SS+       N   T  +      D G
Sbjct: 9   TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQ-------NGFFTPNVSAE---DSG 58

Query: 522 EIKCTATNRAGHSITK 537
              C A+N  G   + 
Sbjct: 59  TYTCVASNGGGGKTSN 74

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI----FSSRRQRIVTDNDI 507
            P  +    D    + +      + EG PTP + W K+G  +       R  RIV  +  
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS-- 58

Query: 508 STL----IIH-QAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            +L    ++H +    DEG   C A N  G ++++      A
Sbjct: 59  GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEVA 100

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1101
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		99.95
KOG4194|consensus	873		99.84
PHA02785	326	IL-beta-binding protein; Provisional	99.74
KOG4194|consensus	873		99.67
PHA02785	326	IL-beta-binding protein; Provisional	99.61
PHA02826	227	IL-1 receptor-like protein; Provisional	99.54
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.42
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.35
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.27
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.26
PHA02826	227	IL-1 receptor-like protein; Provisional	99.25
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.22
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.18
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.17
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.16
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.15
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.14
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.14
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.13
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.13
KOG0196|consensus	996		99.12
KOG0196|consensus	996		99.12
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.11
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.11
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.11
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.11
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.09
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.07
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.07
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.07
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.07
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.07
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.06
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.06
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.06
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.05
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.05
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.05
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.03
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.03
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.03
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.02
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.02
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.02
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.02
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.01
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.01
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.01
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.0
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.0
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.0
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.0
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.99
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.98
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.97
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.97
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.97
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.97
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.96
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.96
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.96
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.95
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.94
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.94
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.94
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.94
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.93
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.93
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.92
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.9
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.9
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.9
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.89
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.89
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.89
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.88
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.88
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.88
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.88
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.88
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.87
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.87
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.87
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.87
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.87
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.87
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.87
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.86
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.86
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.86
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.85
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.85
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.84
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.84
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.84
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.84
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.84
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.84
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.84
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.83
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.82
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.82
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.82
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.82
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.82
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.81
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.81
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.81
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.8
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.8
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.79
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.79
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.79
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.79
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.79
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.78
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.77
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.76
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.76
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.76
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.75
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.74
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.73
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.73
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.72
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.71
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.71
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.7
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.69
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.69
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.69
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.69
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.67
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.67
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.67
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.67
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.66
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.65
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.65
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.64
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.64
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.63
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.63
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.63
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.62
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.62
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.61
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.6
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.59
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.59
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.58
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.58
KOG0613|consensus	1205		98.58
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.58
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.58
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.58
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.57
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.57
KOG0520|consensus	975		98.55
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.55
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.55
KOG2128|consensus	1401		98.54
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.54
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.54
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.52
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.52
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.51
COG5022	1463	Myosin heavy chain [Cytoskeleton]	98.5
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.49
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.49
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.49
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.48
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.48
KOG0520|consensus	975		98.46
KOG0160|consensus	862		98.44
KOG0160|consensus	862		98.43
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.42
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.42
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.41
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.38
KOG0613|consensus	1205		98.37
KOG3515|consensus	741		98.36
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.36
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.35
KOG3515|consensus	741		98.34
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.33
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.32
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.31
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.3
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.29
smart00409	86	IG Immunoglobulin.	98.29
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.25
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.25
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.25
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.24
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.22
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.21
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.21
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.19
COG5022	1463	Myosin heavy chain [Cytoskeleton]	98.19
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.19
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.18
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.17
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.17
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.17
KOG4258|consensus	1025		98.11
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.11
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.11
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.11
KOG4258|consensus	1025		98.09
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.05
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.05
PHA03376	221	BARF1; Provisional	98.04
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.03
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.98
smart00409	86	IG Immunoglobulin.	97.97
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.97
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.91
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.9
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.88
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.87
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.85
KOG2128|consensus	1401		97.85
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.85
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.82
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.78
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.77
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.77
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.73
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.72
KOG4802|consensus	516		97.71
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.7
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.69
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.68
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.64
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.62
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.6
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.6
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.59
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.53
KOG0164|consensus	1001		97.52
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.51
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.51
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.49
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.45
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.44
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.41
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.41
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.39
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.38
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.38
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.36
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.36
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.34
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.31
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.22
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.21
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.2
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.2
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.2
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.19
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.19
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.18
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.08
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.05
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.05
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.03
KOG0165|consensus	1023		97.01
KOG4367|consensus	699		97.01
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.01
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.99
KOG0164|consensus	1001		96.96
smart00015	26	IQ Short calmodulin-binding motif containing conse	96.92
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	96.91
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.91
KOG4152|consensus	830		96.89
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	96.87
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.85
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.85
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.82
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.81
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.79
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.78
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.74
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.67
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	96.65
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.64
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.61
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.61
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.61
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.6
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.57
smart00015	26	IQ Short calmodulin-binding motif containing conse	96.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	96.56
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.54
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.51
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.49
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.48
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.46
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.44
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.44
KOG4802|consensus	516		96.43
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.41
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.38
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.38
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.35
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.28
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	96.23
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.22
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.2
PHA03376	221	BARF1; Provisional	96.2
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.2
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	96.15
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.06
PHA03271	490	envelope glycoprotein C; Provisional	96.02
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.01
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.0
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.0
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	95.96
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	95.9
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	95.89
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	95.88
KOG4367|consensus	699		95.87
PTZ00014	821	myosin-A; Provisional	95.84
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	95.82
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.82
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	95.76
PHA03270	466	envelope glycoprotein C; Provisional	95.67
KOG0165|consensus	1023		95.62
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	95.59
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.58
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	95.58
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	95.58
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	95.5
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.46
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	95.43
PHA02987	189	Ig domain OX-2-like protein; Provisional	95.41
PTZ00014	821	myosin-A; Provisional	95.32
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	95.31
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	95.08
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	95.07
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	95.06
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	94.96
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	94.84
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.73
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	94.68
smart00406	81	IGv Immunoglobulin V-Type.	94.6
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.58
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	94.56
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	94.55
cd05770	93	IgC_beta2m Class I major histocompatibility comple	94.48
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	94.48
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.44
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.39
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.31
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	94.28
smart00407	75	IGc1 Immunoglobulin C-Type.	94.26
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	94.06
PHA03269	566	envelope glycoprotein C; Provisional	94.02
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	93.87
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	93.83
PHA03273	486	envelope glycoprotein C; Provisional	93.74
smart00407	75	IGc1 Immunoglobulin C-Type.	93.41
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	93.38
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	93.33
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	93.29
PHA02982	251	hypothetical protein; Provisional	93.12
KOG1480|consensus	909		93.11
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	92.92
KOG3632|consensus	1335		92.85
KOG4152|consensus	830		92.31
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	92.31
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	92.03
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	91.93
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	91.89
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	91.82
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	91.27
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	91.22
KOG4228|consensus	1087		91.09
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	91.02
KOG4427|consensus	1096		90.69
smart00406	81	IGv Immunoglobulin V-Type.	90.67
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	90.66
cd05770	93	IgC_beta2m Class I major histocompatibility comple	90.61
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	90.56
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	90.16
PHA03270	466	envelope glycoprotein C; Provisional	89.73
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	89.5
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	88.73
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	88.7
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	88.49
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	88.43
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	88.26
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	88.26
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	88.19
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	88.15
KOG4597|consensus	560		88.0
PHA03271	490	envelope glycoprotein C; Provisional	87.79
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	87.23
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	87.17
KOG0942|consensus	1001		87.12
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	87.1
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	86.88
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	86.7
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	86.22
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	86.07
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	85.99
PHA03273	486	envelope glycoprotein C; Provisional	85.47
KOG3632|consensus	1335		85.18
PHA02982	251	hypothetical protein; Provisional	85.06
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	85.05
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	84.77
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	84.71
KOG1832|consensus	1516		84.64
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	84.46
PF05764	240	YL1: YL1 nuclear protein; InterPro: IPR008895 The	84.43
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	84.38
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	84.09
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	84.03
PHA03269	566	envelope glycoprotein C; Provisional	83.94
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	82.51
KOG4427|consensus	1096		82.16
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	81.35
PHA02633	63	hypothetical protein; Provisional	80.83
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	80.19
PF03115	787	Astro_capsid: Astrovirus capsid protein precursor;	80.01

>KOG3513|consensus

Probab=100.00  E-value=2.4e-55  Score=511.99  Aligned_cols=585  Identities=22%  Similarity=0.252  Sum_probs=457.0

Q ss_pred             HHHhhhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcC
Q psy8139         300 IEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP  379 (1101)
Q Consensus       300 ~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~  379 (1101)
                      ...++++.|.|.|+..+|+|.|.|.|+|..|.. .-...+.+..+|.--..|....   ......+++.|.+-    |.|
T Consensus       288 ~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~---~~~gs~v~~eC~a~----g~P  359 (1051)
T KOG3513|consen  288 TYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTE---ADTGSNVTLECKAS----GKP  359 (1051)
T ss_pred             eeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeE---ecCCCCeEEEEEec----CCC
Confidence            345688889999999999999999999999944 4447888888887666665542   22334455555553    222


Q ss_pred             eeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC
Q psy8139         380 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL  459 (1101)
Q Consensus       380 i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p  459 (1101)
                      --.|........-..-.+.-......+.|.|++|++.|+|.|+|.|.|..|....+   +.+.|  .   ..+|.|...|
T Consensus       360 ~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an---A~L~V--~---a~~P~f~~~p  431 (1051)
T KOG3513|consen  360 NPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN---AELKV--L---ASAPVFPLNP  431 (1051)
T ss_pred             CCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee---eEEEE--E---ccCCCCCCCc
Confidence            22222221110000000000122355789999999999999999999999987644   33444  3   3556666665


Q ss_pred             cee--EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         460 HDT--TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       460 ~~~--~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      -..  .+..|..+.+.|.+.+.|.|.++|.+.+..+..+.++.+..+|   +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus       432 ~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~  508 (1051)
T KOG3513|consen  432 VERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAEST  508 (1051)
T ss_pred             cceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceE
Confidence            443  6789999999999999999999999999877778888887766   79999999999999999999999999999


Q ss_pred             EEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECCeecCC---CCceEEEeecceEEEEEccCC
Q psy8139         538 ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNGEPLTS---GGRYEITHTDRYLNLRISDAR  612 (1101)
Q Consensus       538 ~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~---~~~~~~~~~~~~~sl~i~~l~  612 (1101)
                      +.|.|..++.+..+|..   ..+..|..+.|.|.+..++  .+.+.|.++|..+..   +.++......+.+.|+|.+++
T Consensus       509 ~~L~Vkd~tri~~~P~~---~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~  585 (1051)
T KOG3513|consen  509 GNLIVKDATRITLAPSN---TDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVS  585 (1051)
T ss_pred             EEEEEecCceEEeccch---hhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeec
Confidence            99999999999886653   3788899999999999877  468999999998763   344544433334679999999


Q ss_pred             CCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcc
Q psy8139         613 RADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL  692 (1101)
Q Consensus       613 ~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~  692 (1101)
                      ..+.|.|.|+|.....+.+..+.+.|.++|+||.++.+..++.+++.|+|.+..                          
T Consensus       586 l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~--------------------------  639 (1051)
T KOG3513|consen  586 LEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGS--------------------------  639 (1051)
T ss_pred             cccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCC--------------------------
Confidence            999999999999988888888999999999999999999999999999999644                          


Q ss_pred             cCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCcc---EEEEcCCCCCceEEEEEEEEcCCc
Q psy8139         693 LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT---ELMVSGLEPGWRYQFRITAENVVG  769 (1101)
Q Consensus       693 ~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~---~~~i~~L~p~t~Y~~~V~A~n~~G  769 (1101)
                                           ++++||..|.|+.+..-...|..+...+...+   +.++.+|.|+..|+|||.|+|..|
T Consensus       640 ---------------------dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG  698 (1051)
T KOG3513|consen  640 ---------------------DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIG  698 (1051)
T ss_pred             ---------------------CCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccc
Confidence                                 33345667777777666667877665433333   678889999999999999999999


Q ss_pred             cCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEee
Q psy8139         770 FSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISS  847 (1101)
Q Consensus       770 ~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~  847 (1101)
                      .|+||++|....+ .+++|...|.++.  ....+..++.|.|         +. ....+|+.+            +|+|.
T Consensus       699 ~gePS~pS~~~rT-~ea~P~~~P~nv~g~g~~~~eLvItW~P---------l~-~~~qNG~gf------------gY~Vs  755 (1051)
T KOG3513|consen  699 IGEPSPPSEKVRT-PEAAPSVNPSNVKGGGGSPTELVITWEP---------LP-EEEQNGPGF------------GYRVS  755 (1051)
T ss_pred             cCCCCCCccceec-CCCCCccCCccccccCCCCceEEEEecc---------CC-HHHccCCCc------------eEEEE
Confidence            9999999988765 4689999999998  4455566777866         22 446789999            99999


Q ss_pred             eeccCCCCCCceeeeec---cccccCCCCCCCCCccCcccce--eeccccccc---CceeecccCCCCccCCCCCChhhh
Q psy8139         848 FRDKYVDNEDDYDIVET---NEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSDDLDRHYPTLDEEEE  919 (1101)
Q Consensus       848 ~r~~~~~~~~~~~~v~~---~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e~~P~~~P~~v~~~~  919 (1101)
                      |+..+....|....+.+   +.++..+..     -.+|++|+  |+|+|..|.   |.+++++++|+.|..+|+.+.+..
T Consensus       756 wr~~g~~~~W~~~~v~~~d~~~~V~~~~s-----t~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~  830 (1051)
T KOG3513|consen  756 WRPQGADKEWKEVIVSNQDQPRYVVSNES-----TEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKP  830 (1051)
T ss_pred             EEeCCCCcccceeEecccCCceEEEcCCC-----CCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeec
Confidence            99999888999988876   455554444     23599999  999999998   899999999999999999999999


Q ss_pred             hhhhhhhccc---cccccccchhhcccccchhhhhhccccccccccc-ccCCceeEeecCCCCCCCceeec-ee
Q psy8139         920 EEDRESLVKD---RESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSL-PVNSDIQIKIDKPDDEPDYVIKG-KY  988 (1101)
Q Consensus       920 ~~~n~t~v~v---p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~-~~  988 (1101)
                      .  +++.+.|   |+...||+++||.|     .||+.++........ ..+..+.+.|.||++.+-|-|+- +|
T Consensus       831 ~--s~s~~~v~W~~~~~~nG~l~gY~v-----~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~  897 (1051)
T KOG3513|consen  831 L--SSSEVNLSWKPPLWDNGKLTGYEV-----KYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAY  897 (1051)
T ss_pred             c--cCceEEEEecCcCccCCccceeEE-----EEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEe
Confidence            9  6666666   77888899999999     999998875322222 22566688999999999999886 44

>KOG4221|consensus

Probab=100.00  E-value=3.7e-50  Score=462.97  Aligned_cols=638  Identities=19%  Similarity=0.237  Sum_probs=459.4

Q ss_pred             HHHHHHHhhhhhhhhhcccc-----cCcceEEEeeecc-cccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEE
Q psy8139         296 FADIIEQKKQAKKTADNQFE-----NQAPLYVRLEEAI-TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRW  369 (1101)
Q Consensus       296 ~~~~~~~~~~~~l~i~~~~~-----~d~g~Y~c~a~n~-~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W  369 (1101)
                      +.+.+++-..++|.|.++..     .++|+|+|.|.-. .|.-.+....+.+...+..-..+....   -.-..++.++|
T Consensus        86 ~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t---~~~g~ta~f~c  162 (1381)
T KOG4221|consen   86 YDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTT---LLYGQTALFSC  162 (1381)
T ss_pred             hhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCcccee---EecCCcEEEEE
Confidence            34556667889999999988     9999999999554 343334445555555444332222210   11233444444


Q ss_pred             eCCCCCCCcCeeEEEEEEEecCC-CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC
Q psy8139         370 EPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS  448 (1101)
Q Consensus       370 ~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~  448 (1101)
                      ...    +.+..  .+.|..... ..|.. ......++.|.|.+|+|+|.|.|+|.+.+......    |....+++...
T Consensus       163 ~vn----~e~~p--~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~----S~~a~ltv~s~  231 (1381)
T KOG4221|consen  163 EVN----AEPVP--TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRT----SNEAELTVLSD  231 (1381)
T ss_pred             EEc----CccCc--eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCc----cceeEEEecCC
Confidence            322    11111  122222111 11111 12224568899999999999999999998654433    34444544422


Q ss_pred             --CCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         449 --PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       449 --~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                        ....-.|...|.+..+..|+++.|.|.+.|.|.|.|.|.+||..+...+ +++... +.+.|.|++++..|+|.|+|.
T Consensus       232 ~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~  309 (1381)
T KOG4221|consen  232 PGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCR  309 (1381)
T ss_pred             cccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEE
Confidence              2223346788999999999999999999999999999999999887665 333332 234899999999999999999


Q ss_pred             EEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139         527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL  606 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl  606 (1101)
                      |.|......+++.|.|..+|.+...|.   ++...++..+.+.|.+.|.|.+.+.|++||..+..+..+++...+   .+
T Consensus       310 Atn~~D~idasaev~V~a~P~~~~~p~---~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---~l  383 (1381)
T KOG4221|consen  310 ATNTNDSIDASAEVTVLAPPGFTKAPT---TLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG---NL  383 (1381)
T ss_pred             ecCCCcccccceEEEEEcCCCCCCCCc---ceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC---Cc
Confidence            999888888899999999999876654   457778999999999999999999999999998886666665432   28


Q ss_pred             EEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC---------CCCCCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR---------PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       607 ~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~---------P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      .|.++-..|.|.|.|.|.|..|.....+.+.+...         |..|..+.+..+....+.++|.+|. ..+..|..|.
T Consensus       384 rIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~  462 (1381)
T KOG4221|consen  384 RILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYT  462 (1381)
T ss_pred             EEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEE
Confidence            88888889999999999999999888877755433         4566777788888899999999887 5555888888


Q ss_pred             EEEE--------------------------------cC-------CCCCCCCccc---------CCCCCCCCceEEEEee
Q psy8139         678 VEYF--------------------------------RP-------PGPPGKPQLL---------PDSPSLDRDVFTIRWE  709 (1101)
Q Consensus       678 v~~~--------------------------------~~-------~~~p~~p~~~---------~~~~~~~~~si~l~W~  709 (1101)
                      +.|.                                ++       .|.++.|..+         ..+-..++.++.+.|.
T Consensus       463 v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~We  542 (1381)
T KOG4221|consen  463 VFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWE  542 (1381)
T ss_pred             EEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEec
Confidence            8771                                11       1222222221         2333578899999999


Q ss_pred             CCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCC
Q psy8139         710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA  789 (1101)
Q Consensus       710 pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~  789 (1101)
                      +|... |++|++|++.|...+.+.|..+.   .+.++++|.||.|+|.|.|+|.|+|.+|.|..|....+.|+.  +.|+
T Consensus       543 pP~~~-n~~I~~yk~~ys~~~~~~~~~~~---~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls--d~Ps  616 (1381)
T KOG4221|consen  543 PPPFG-NGPITGYKLFYSEDDTGKELRVE---NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS--DVPS  616 (1381)
T ss_pred             CCCCC-CCCceEEEEEEEcCCCCceEEEe---cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc--CCCC
Confidence            99654 46799999999999777777765   588999999999999999999999999999988776666666  9999


Q ss_pred             CCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeecccc
Q psy8139         790 AAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEH  867 (1101)
Q Consensus       790 ~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~  867 (1101)
                      +||.++.  ..+++++.+.|.||...          ..++.+.            .|++.|+....+.+.++.-+.    
T Consensus       617 aPP~Nl~lev~sStsVrVsW~pP~~~----------t~ng~it------------gYkIRy~~~~~~~~~~~t~v~----  670 (1381)
T KOG4221|consen  617 APPQNLSLEVVSSTSVRVSWLPPPSE----------TQNGQIT------------GYKIRYRKLSREDEVNETVVK----  670 (1381)
T ss_pred             CCCcceEEEecCCCeEEEEccCCCcc----------cccceEE------------EEEEEecccCcccccceeecc----
Confidence            9999887  66677788999886442          3445555            899999988877766554443    


Q ss_pred             ccCCCCCCCCCccCcccce--eeccccccc---CceeecccCCCC-cc---CCCCCChhhhhhhhhhhccc-cccccccc
Q psy8139         868 TGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSDDL-DR---HYPTLDEEEEEEDRESLVKD-RESSVKGK  937 (1101)
Q Consensus       868 ~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e~~-P~---~~P~~v~~~~~~~n~t~v~v-p~~~~nG~  937 (1101)
                       ++.+...+.+|++.|.|.  |.|+|..|.   +..+..-|.+.. +.   .+|..+.+.... ++..+.| ||...+-.
T Consensus       671 -~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~-~si~vsW~Pp~~~~~~  748 (1381)
T KOG4221|consen  671 -GNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVHPGS-NSIVVSWTPPPHPNIV  748 (1381)
T ss_pred             -cchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeeccCc-eeEEEEeCCCCChhhh
Confidence             223333444455999999  888888887   666666665433 33   466666776661 3444444 88888899


Q ss_pred             hhhcccccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec-eeeechhhh
Q psy8139         938 EEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG-KYEVDNEML  995 (1101)
Q Consensus       938 i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  995 (1101)
                      |.||+|     +|+.-.+....+-.+-...+.++.|..++++-+|+||- +|-..+++.
T Consensus       749 vrgY~i-----g~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~  802 (1381)
T KOG4221|consen  749 VRGYKI-----GYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGN  802 (1381)
T ss_pred             hcceEE-----eeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCc
Confidence            999999     77644444434333334456678888899999999998 777666665

>KOG4221|consensus

Probab=100.00  E-value=5.2e-46  Score=428.83  Aligned_cols=650  Identities=17%  Similarity=0.195  Sum_probs=449.8

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCC---CCCCCCeeEEEEeCCCCCCCcCe
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDS---PSLDRDVFTIRWEPPEYDGGSPV  380 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~---~~~~~~sv~l~W~~p~~~g~~~i  380 (1101)
                      ..+.|.|.++.++|+|.|.|+|++......|....+++..-|..-....++...   ..+....+.|.|....       
T Consensus       191 psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~-------  263 (1381)
T KOG4221|consen  191 PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG-------  263 (1381)
T ss_pred             CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC-------
Confidence            567899999999999999999977766666666666666433322111110000   0123344444444321       


Q ss_pred             eEEEEEEEecCCCceEEcCc---------cccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCC
Q psy8139         381 LGYLVEHRRTGSPYWVRASP---------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA  451 (1101)
Q Consensus       381 ~~Y~v~~~~~~~~~w~~~~~---------~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~  451 (1101)
                             .+.....|.+.+.         ......+|.|++++..|+|.|+|.|.|..-....   ++.++|.      .
T Consensus       264 -------~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~ida---saev~V~------a  327 (1381)
T KOG4221|consen  264 -------VPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDA---SAEVTVL------A  327 (1381)
T ss_pred             -------CCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccccc---ceEEEEE------c
Confidence                   1111112222111         1123467999999999999999999994433332   3445553      6


Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +|.|...|.++...++.++.|.|.+.|.|.|.+.|++||..+..+..+.+...+   .+.|..+...|+|.|+|.+.|..
T Consensus       328 ~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~  404 (1381)
T KOG4221|consen  328 PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDA  404 (1381)
T ss_pred             CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhccCc
Confidence            788999999999999999999999999999999999999998887777765544   39999999999999999999999


Q ss_pred             CceEEEEEEeeccCCccc---cCCCCCCCeEEeeCCEEEEEEEEe-----ecCCCeeEEEE-CCeecCCCCceEEEeecc
Q psy8139         532 GHSITKARLRLEAPPTIR---LPKQYEDGLLFEMGEIIKLKVSMA-----GMPPPTARWLH-NGEPLTSGGRYEITHTDR  602 (1101)
Q Consensus       532 g~~~~s~~l~V~~~p~~~---~~~~~~~~~~v~~g~~~~l~c~~~-----g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~  602 (1101)
                      |.....+.+.+...|.+.   .-+..+..+.+..-....+.|++.     +.+.+.++|+. ++..+.  .+.....+.+
T Consensus       405 G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~r--er~~~tss~g  482 (1381)
T KOG4221|consen  405 GSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVR--ERLQNTSSPG  482 (1381)
T ss_pred             ccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchh--hhheeccCCc
Confidence            999988877665433221   112222334444455555666665     22345677764 222222  1222222222


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE--
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--  680 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~--  680 (1101)
                       ..+++.+|.+...|.|+|.|.|..|.+.++..|.|.++|.+|..+.+...+..++.+.|++|...|| +|++|.+.|  
T Consensus       483 -~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~-~I~~yk~~ys~  560 (1381)
T KOG4221|consen  483 -IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNG-PITGYKLFYSE  560 (1381)
T ss_pred             -eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCC-CceEEEEEEEc
Confidence             6788999999999999999999999999999999999998887788999999999999999986665 999999988  


Q ss_pred             ------------------------------------------------EcCCCCCCCCcccCCCCCCCCceEEEEeeCC-
Q psy8139         681 ------------------------------------------------FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP-  711 (1101)
Q Consensus       681 ------------------------------------------------~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP-  711 (1101)
                                                                      .+..+.|++|+........++++|.|+|.|| 
T Consensus       561 ~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~  640 (1381)
T KOG4221|consen  561 DDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPP  640 (1381)
T ss_pred             CCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCC
Confidence                                                            2225677888876666778999999999985 


Q ss_pred             CCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCC--C
Q psy8139         712 EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP--A  789 (1101)
Q Consensus       712 ~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P--~  789 (1101)
                      ....++.|++|.|.|+..............++.+.+.+.+|.|+|.|.|+|.|.|..|.|++|.+...-|...+..+  +
T Consensus       641 ~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp  720 (1381)
T KOG4221|consen  641 SETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVP  720 (1381)
T ss_pred             cccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCC
Confidence            55667789999999996654332222222257788999999999999999999999999999988877776422222  2


Q ss_pred             CCCcccc-cccccceeccccCCCCCCccccceeeee--cC-----cchh-----HHHHhHhhh-----------------
Q psy8139         790 AAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQ--ST-----SPML-----AAFMLLMLF-----------------  839 (1101)
Q Consensus       790 ~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~--~~-----~~~~-----~~~~v~~~~-----------------  839 (1101)
                      .+|..+. ......+++.|.||..++-.+..|...+  +.     +++.     ..|.+-.+.                 
T Consensus       721 ~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gd  800 (1381)
T KOG4221|consen  721 GKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGD  800 (1381)
T ss_pred             CCCceeeeccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCC
Confidence            3444333 5566778889998887744333332222  10     0111     000000011                 


Q ss_pred             ----------------------------------------------------ceeeEEeeeeccCCCCCCceeeeecccc
Q psy8139         840 ----------------------------------------------------TFIETISSFRDKYVDNEDDYDIVETNEH  867 (1101)
Q Consensus       840 ----------------------------------------------------~~~~Y~v~~r~~~~~~~~~~~~v~~~~~  867 (1101)
                                                                          +...|.|.|...+....-...     ..
T Consensus       801 G~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~~~~~-----~~  875 (1381)
T KOG4221|consen  801 GNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIRNGTLYR-----YD  875 (1381)
T ss_pred             CcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEEEEEeecccccceeEE-----Ee
Confidence                                                                233444444432222210000     01


Q ss_pred             ccCCCCCCCCCccCcccce--eecc--ccccc--CceeecccCCCCccCCCCCChhhhhhhhhhhccc---cccccccch
Q psy8139         868 TGTGAPSDNENESDYFPEK--TIDE--SVYGY--DTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKD---RESSVKGKE  938 (1101)
Q Consensus       868 ~~~~~~~~l~~~~~~t~Y~--V~a~--n~~G~--~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~v---p~~~~nG~i  938 (1101)
                      .-+++.....++++++.|+  |.+.  |..+.  +..+...|.+.+|..||.++++.... +.+++.|   ||...||.|
T Consensus       876 ~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e-~P~~v~v~WqPp~e~nG~I  954 (1381)
T KOG4221|consen  876 NSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDE-KPTTVIVHWQPPTEPNGEI  954 (1381)
T ss_pred             cccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccC-CCCccccccCCCcCCCCce
Confidence            2233445566667999999  3332  33333  99999999999999999999999885 4455555   899999999


Q ss_pred             hhcccccchhhhhhcccccccccccccC--CceeEeecCCCCCCCceeec-eeeechhh
Q psy8139         939 EEAKVIKDDEYYENLGDVLTKKYSLPVN--SDIQIKIDKPDDEPDYVIKG-KYEVDNEM  994 (1101)
Q Consensus       939 ~gY~I~~~~~~y~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~-~~~~~~~~  994 (1101)
                      ++|.|     ||..++......|..-.-  ......|.+|.+++-|.|++ +-.+++.+
T Consensus       955 ~~Yii-----~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~g 1008 (1381)
T KOG4221|consen  955 TEYII-----YYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPG 1008 (1381)
T ss_pred             eeEEE-----EEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCC
Confidence            99999     999999999988876553  45578999999999999999 77777776

>KOG3513|consensus

Probab=100.00  E-value=2.3e-41  Score=395.36  Aligned_cols=589  Identities=21%  Similarity=0.250  Sum_probs=417.0

Q ss_pred             hhhhhhhhccc-ccCcceEEEeeecccccccccceeeeccCCCCCC-----------CCCcccCCCCCCCCCeeEEEEeC
Q psy8139         304 KQAKKTADNQF-ENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP-----------GKPQLLPDSPSLDRDVFTIRWEP  371 (1101)
Q Consensus       304 ~~~~l~i~~~~-~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P-----------~~p~~l~~~~~~~~~sv~l~W~~  371 (1101)
                      ..+.|.|.+.. ..|.|.|+|+|+|..|...+.++.+.....+..+           +.+..|.|....+-..+++.|.-
T Consensus        94 ~~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~  173 (1051)
T KOG3513|consen   94 LGGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWML  173 (1051)
T ss_pred             ecCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehh
Confidence            37889999988 8999999999999999999988776665444333           34445555554554456666643


Q ss_pred             CCCCC---------------------------------------------------------------------------
Q psy8139         372 PEYDG---------------------------------------------------------------------------  376 (1101)
Q Consensus       372 p~~~g---------------------------------------------------------------------------  376 (1101)
                      .....                                                                           
T Consensus       174 ~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a  253 (1051)
T KOG3513|consen  174 NEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETA  253 (1051)
T ss_pred             ccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccc
Confidence            21100                                                                           


Q ss_pred             ---CcCeeEEEEEEEecCCCceEEcCccccc--------cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEe
Q psy8139         377 ---GSPVLGYLVEHRRTGSPYWVRASPHMVE--------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY  445 (1101)
Q Consensus       377 ---~~~i~~Y~v~~~~~~~~~w~~~~~~~~~--------~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~  445 (1101)
                         ....+.|.-...+.....|.+++..+..        ...|.|.+++.+|+|.|+|.|.|..|...     ....+.+
T Consensus       254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-----~~~~v~v  328 (1051)
T KOG3513|consen  254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT-----HSGHVTV  328 (1051)
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccce-----eeEEEEE
Confidence               0000001111111122246665542222        34599999999999999999999999543     2244444


Q ss_pred             ccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc---EEEEecCCeeEEEEeecCCCCCEE
Q psy8139         446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR---QRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       446 ~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      .    .+|.|+..+.+..+..|++++|.|.+.|.|.|.++|++||.++....+   +.+.  .+  +|.|.+|+..|+|.
T Consensus       329 ~----a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~--~g--~L~is~v~~~dsg~  400 (1051)
T KOG3513|consen  329 Y----APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID--DG--TLIISNVQESDSGV  400 (1051)
T ss_pred             e----cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe--CC--EEEEEecccccCeE
Confidence            3    889999999999999999999999999999999999999999986554   4432  33  89999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEeeccC-CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec
Q psy8139         523 IKCTATNRAGHSITKARLRLEAP-PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD  601 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~~~-p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~  601 (1101)
                      |+|.|.|..|...+++.|.|... |.+...+. .....+..|..+.+.|...+.|.+.++|.+++..+..++++.+..  
T Consensus       401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~-~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e--  477 (1051)
T KOG3513|consen  401 YQCIAENKYGTIYANAELKVLASAPVFPLNPV-ERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE--  477 (1051)
T ss_pred             EEeeeecccceEeeeeEEEEEccCCCCCCCcc-ceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC--
Confidence            99999999999999999999885 77765543 234567789999999999999999999999988777778888765  


Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV  678 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v  678 (1101)
                       +++|.|.+++.+|.|.|+|.|.|..|.......|.|.+++.   +|.+.  ....+.+++|.|+.-.++          
T Consensus       478 -dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~--~v~~g~~v~l~Ce~shD~----------  544 (1051)
T KOG3513|consen  478 -DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNT--DVKVGESVTLTCEASHDP----------  544 (1051)
T ss_pred             -CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchh--hhccCceEEEEeecccCC----------
Confidence             77899999999999999999999999999999999998763   44332  234577999999964322          


Q ss_pred             EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEc--CCCCCc
Q psy8139         679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS--GLEPGW  756 (1101)
Q Consensus       679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t  756 (1101)
                                            .-.+++.|...         |..+...+.++ .......  .+...++|.  .|.+.-
T Consensus       545 ----------------------~ld~~f~W~~n---------G~~id~~~~~~-~~~~~~~--~~~g~L~i~nv~l~~~G  590 (1051)
T KOG3513|consen  545 ----------------------SLDITFTWKKN---------GRPIDFNPDGD-HFEINDG--SDSGRLTIANVSLEDSG  590 (1051)
T ss_pred             ----------------------CcceEEEEEEC---------CEEhhccCCCC-ceEEeCC--cCccceEEEeeccccCc
Confidence                                  23467788742         22222222222 1111111  111344444  456666


Q ss_pred             eEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHH
Q psy8139         757 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFM  834 (1101)
Q Consensus       757 ~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~  834 (1101)
                      .|.+.+..   .+.+-.+... .+ +   ..||.||..+.  ....+++.+.|.|..            +.++|+.    
T Consensus       591 ~Y~C~aqT---~~Ds~s~~A~-l~-V---~gpPgpP~~v~~~~i~~t~~~lsW~~g~------------dn~SpI~----  646 (1051)
T KOG3513|consen  591 KYTCVAQT---ALDSASARAD-LL-V---RGPPGPPPDVHVDDISDTTARLSWSPGS------------DNNSPIE----  646 (1051)
T ss_pred             eEEEEEEE---eecchhcccc-eE-E---ecCCCCCCceeEeeeccceEEEEeecCC------------CCCCCce----
Confidence            66665554   3332222222 22 2   35666666554  678888999998843            4446777    


Q ss_pred             hHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccccccc----CceeecccCCCCc
Q psy8139         835 LLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY----DTIVYGYDSDDLD  908 (1101)
Q Consensus       835 v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~----~~~v~~~t~e~~P  908 (1101)
                              .|.+.++.. ....|...........+. .+.+..+|.||+.|+  |.|.|++|.    .......|.|++|
T Consensus       647 --------~Y~iq~rt~-~~~~W~~v~~vp~~~~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P  716 (1051)
T KOG3513|consen  647 --------KYTIQFRTP-FPGKWKAVTTVPGNITGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP  716 (1051)
T ss_pred             --------EEeEEecCC-CCCcceEeeECCCcccCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC
Confidence                    888888777 466687765322222222 234466677999999  999999998    5556788999999


Q ss_pred             cCCCCCChhhhhhhhhhhccc---cccccccchhhcccccchhhhhhcccc-cccccccccC--CceeEeecCCCCCCCc
Q psy8139         909 RHYPTLDEEEEEEDRESLVKD---RESSVKGKEEEAKVIKDDEYYENLGDV-LTKKYSLPVN--SDIQIKIDKPDDEPDY  982 (1101)
Q Consensus       909 ~~~P~~v~~~~~~~n~t~v~v---p~~~~nG~i~gY~I~~~~~~y~~~~~~-~~~~~~l~~~--~~~~~~i~~~~~~~~~  982 (1101)
                      ..+|.||.......+...|+|   |+...||.-.||+|     .|+..+.. ..++-.+...  +.+.+......+.+.|
T Consensus       717 ~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~V-----swr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpy  791 (1051)
T KOG3513|consen  717 SVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRV-----SWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPY  791 (1051)
T ss_pred             ccCCccccccCCCCceEEEEeccCCHHHccCCCceEEE-----EEEeCCCCcccceeEecccCCceEEEcCCCCCCccee
Confidence            999999999988666777777   58889999999999     99998887 5555444443  5556666666678888


Q ss_pred             eeec-eeeechhh
Q psy8139         983 VIKG-KYEVDNEM  994 (1101)
Q Consensus       983 ~~~~-~~~~~~~~  994 (1101)
                      .||. .+--.+++
T Consensus       792 evKVqa~N~~GeG  804 (1051)
T KOG3513|consen  792 EVKVQAINDQGEG  804 (1051)
T ss_pred             EEEEEEecCCCCC
Confidence            8877 44444444

>KOG4222|consensus

Probab=100.00  E-value=1.8e-37  Score=356.71  Aligned_cols=599  Identities=21%  Similarity=0.237  Sum_probs=409.2

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcc----------cCCCCCCCCCeeEEEEeCCC
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQL----------LPDSPSLDRDVFTIRWEPPE  373 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~----------l~~~~~~~~~sv~l~W~~p~  373 (1101)
                      .+|+|.|.|+...|+|.|.|++.|..|..++....+++..+|..-..|.+          +.|. ..+..--+|.|... 
T Consensus       185 sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~-v~GdP~P~Vrwkk~-  262 (1281)
T KOG4222|consen  185 SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCR-VGGDPQPTVRWKKD-  262 (1281)
T ss_pred             cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccc-cCCCCCCceeeecc-
Confidence            67999999999999999999999999999999999999998876555554          2333 33444455555552 


Q ss_pred             CCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCC
Q psy8139         374 YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  453 (1101)
Q Consensus       374 ~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P  453 (1101)
                       ++..+...|.|..                +..++.|...+|+|+|.|.|.|.|..|.-+++   ..++|.      .+|
T Consensus       263 -~~~~P~~ry~i~~----------------d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as---a~ltV~------apP  316 (1281)
T KOG4222|consen  263 -DPSLPRSRYSILD----------------DTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS---ATLTVQ------APP  316 (1281)
T ss_pred             -CCCCCccceeeee----------------ccccccccccCCCcccceeeeccccccccccc---cceEEe------cCc
Confidence             3444555555532                22578899999999999999999999987655   445553      789


Q ss_pred             eeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEE
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      .|...|.+..+..|..++|.|.+.|+|.|.+.|.+.|....        ...+..+...+   +|+|.++...|.|.|.|
T Consensus       317 ~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvc  393 (1281)
T KOG4222|consen  317 SFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVC  393 (1281)
T ss_pred             ccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEee
Confidence            99999999999999999999999999999999999765322        12233333222   89999999999999999


Q ss_pred             EEEeCCCceEEEEEEeecc-------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE
Q psy8139         526 TATNRAGHSITKARLRLEA-------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT  598 (1101)
Q Consensus       526 ~a~n~~g~~~~s~~l~V~~-------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~  598 (1101)
                      ...+..|.....+.+.+..       +|.+...+   .+.+...+....+.|.+.+.|.+.+.|.++|..+.........
T Consensus       394 q~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~---~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~  470 (1281)
T KOG4222|consen  394 QTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGP---ANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ  470 (1281)
T ss_pred             cccccccccccceeEEEEeeeccCCCCceeeecc---cccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce
Confidence            9999888876655444432       22222222   2335556888999999999999999999998887643322111


Q ss_pred             eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139         599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV  678 (1101)
Q Consensus       599 ~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v  678 (1101)
                        ....++.|.++...|.|.|+|.|.+..|....++.+.|.+.-.. ..+..              ..+...        
T Consensus       471 --~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s-~q~~r--------------~~D~S~--------  525 (1281)
T KOG4222|consen  471 --QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS-QQFCR--------------CEDPSA--------  525 (1281)
T ss_pred             --eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc-ccccc--------------CCChhh--------
Confidence              12578999999999999999999999999999999998754332 11100              011111        


Q ss_pred             EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEE-eCCCCCceeecccccCccEEEEcCCCCCce
Q psy8139         679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  757 (1101)
                          .+++|+.|..+    +++.++++|+|.++...+..|+++|++++. ..-...|...... ...+.+.|.+|.|++.
T Consensus       526 ----~pS~p~~p~v~----~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~-v~~t~~~I~gL~P~~s  596 (1281)
T KOG4222|consen  526 ----LPSPPGTPGVV----NVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGR-VKTTTYAIRGLKPNLS  596 (1281)
T ss_pred             ----CCCCCCCCccc----cCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccc-cccceeeecCcCccce
Confidence                12334444333    467778888888766667788888988865 4445678776654 6778999999999999


Q ss_pred             EEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccccccccc-eeccccCC------CCCCccccceeeeecCcchh
Q psy8139         758 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT-ALEDEKPR------NTNNCDYESKRTFQSTSPML  830 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~~~~~s~-~~~~w~p~------~~~~~~~~~~~~~~~~~~~~  830 (1101)
                      |.|.|+|.|..|.|.||..+..+.+...+...+-........+.+ .++-|..+      ...++|....  .....-+.
T Consensus       597 ylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~k--q~~~~~i~  674 (1281)
T KOG4222|consen  597 YLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDK--QHGSQYIQ  674 (1281)
T ss_pred             eeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeec--ccCccccc
Confidence            999999999999999998888776542222211111111111111 22222211      1122222111  01122233


Q ss_pred             HHHHhHhhhceeeEEeeeeccCC-CCCCceeeeeccccccCCCCCCCCCccCcccce--eecccccc-----c-Cceeec
Q psy8139         831 AAFMLLMLFTFIETISSFRDKYV-DNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYG-----Y-DTIVYG  901 (1101)
Q Consensus       831 ~~~~v~~~~~~~~Y~v~~r~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G-----~-~~~v~~  901 (1101)
                                  +|.|.||.... ..+|....+..    -+.....+.++.+++.|+  +..+-..|     . +.....
T Consensus       675 ------------g~~I~~r~~~~~~a~~s~~~v~~----~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~a  738 (1281)
T KOG4222|consen  675 ------------GYRISYRSLGSQLAQWSNAGVTV----PTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTA  738 (1281)
T ss_pred             ------------ceEEEeccCccccccccccceec----cCCcceeccccCCCccceeeccCccCCCcceecCCcccccc
Confidence                        89999999887 44576665522    122234455566999999  55555433     3 788889


Q ss_pred             ccCCCCccCCCCCC---hhhhhhhhhhhccc-----cccccccchhhcccccchhhhhhcccccccccccccCCceeEee
Q psy8139         902 YDSDDLDRHYPTLD---EEEEEEDRESLVKD-----RESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKI  973 (1101)
Q Consensus       902 ~t~e~~P~~~P~~v---~~~~~~~n~t~v~v-----p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i  973 (1101)
                      .|.+.+|+.+|.++   +....  |.|++.|     |.+..||++.||+|    +.-..+....+-+..++ .....++|
T Consensus       739 lt~e~~PSapp~~~~~~s~~~~--n~Ta~~Vsw~~pp~d~~ng~~qg~ki----~~~~~e~tr~h~n~t~~-a~~~sv~i  811 (1281)
T KOG4222|consen  739 LTLEEPPSAPPQGVQHVSKGSY--NGTAGSVSWAPPPADVQNGILQGYKI----ECSGGEKTRIHINKTTN-ARTGSVTI  811 (1281)
T ss_pred             cccccCCCCCCCCccccccccC--CCceeeEEecCCcccccCCcccceeE----EeecCcccccccccccc-CCCCceEe
Confidence            99999999999995   44444  6666666     46667999999999    11111112333333344 45557899


Q ss_pred             cCCCCCCCceeec-eeeechhhh
Q psy8139         974 DKPDDEPDYVIKG-KYEVDNEML  995 (1101)
Q Consensus       974 ~~~~~~~~~~~~~-~~~~~~~~~  995 (1101)
                      .++..|.-|.+.. ..+--++++
T Consensus       812 ~~l~~g~ay~vtv~a~T~aGvG~  834 (1281)
T KOG4222|consen  812 GNLVTGIAYSVTVAARTGAGVGV  834 (1281)
T ss_pred             ccccccceEEEEEeeecCCccCC
Confidence            9999998888776 444445555

>KOG4222|consensus

Probab=99.95  E-value=3.9e-27  Score=271.93  Aligned_cols=554  Identities=20%  Similarity=0.235  Sum_probs=346.9

Q ss_pred             cCcceEEEeeecccccccccceeeeccCCCC-CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc
Q psy8139         316 NQAPLYVRLEEAITGLNVGTDLYCVIKKPPG-PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY  394 (1101)
Q Consensus       316 ~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~-~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~  394 (1101)
                      .|.|.|+|++.|..|.+++-...+.++..+. .=..|..+   .......+.+.+.+|.  |. +.  =.|.|..++...
T Consensus       102 ~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~---~~a~ge~avlEcgpP~--gh-pe--ptvSw~Kdg~pl  173 (1281)
T KOG4222|consen  102 HDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDV---QAAVGEEAVLECGPPR--GH-PE--PTVSWVKDGKPL  173 (1281)
T ss_pred             CCCceeEeeecCccceeeecCceEEEEEechhcccCcccc---cccccceeEEeccCCC--CC-CC--CcceeecCCCcc
Confidence            3999999999999999999766555543322 22222222   1233455555555552  11 11  112333333333


Q ss_pred             eEEc--CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEE
Q psy8139         395 WVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEF  472 (1101)
Q Consensus       395 w~~~--~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L  472 (1101)
                      |...  .....+.+.|.|.++...|+|.|.|+|.|.+|.-+..    ...+.+    ..+|.|...|.+..+..|..+.|
T Consensus       174 ~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~----~A~lsv----~e~P~f~~rp~~~~v~~g~~~~f  245 (1281)
T KOG4222|consen  174 DHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESI----PARLSV----QEKPWFWKRPKDLAVLVGAAAEF  245 (1281)
T ss_pred             ccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccc----cceeee----ccCCccccccccceeeccccccc
Confidence            3111  1233577899999999999999999999999987643    334443    37899999999999999999999


Q ss_pred             EEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCC
Q psy8139         473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK  552 (1101)
Q Consensus       473 ~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~  552 (1101)
                      .|.+.|.|.|.+.|.+.+..+.. .++.+.....  +|.|..+++.|+|.|.|.+.|..|....++.++|..+|.+...+
T Consensus       246 ~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp  322 (1281)
T KOG4222|consen  246 DCRVGGDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP  322 (1281)
T ss_pred             ccccCCCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence            99999999999999996665543 3455544422  89999999999999999999999999999999999999998776


Q ss_pred             CCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecC--------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       553 ~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      ...   .+..|..++|.|.+.|.|.|.+.|.+.|...-        ...+..+..   ..+|+|+++...|.|.|.|...
T Consensus       323 ~dq---~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~---~g~L~it~v~~~d~g~Yvcq~~  396 (1281)
T KOG4222|consen  323 RDQ---KVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP---TGTLTITNVRQSDEGYYVCQTQ  396 (1281)
T ss_pred             Ccc---ccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC---CCCcccccccccccceEeeccc
Confidence            543   67779999999999999999999998764321        122333333   3489999999999999999999


Q ss_pred             eCCCCceeEEEEEEecC---CCCCCccEEEE-----ecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCC
Q psy8139         625 NSLGEDVASFLVTVTDR---PLPPGKAKVVM-----TLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDS  696 (1101)
Q Consensus       625 N~~G~~~~s~~l~v~~~---P~~P~~~~~~~-----~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~  696 (1101)
                      |..|.+.....+.+++.   -.||..+..-.     ..+..+.+.|..                                
T Consensus       397 ~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a--------------------------------  444 (1281)
T KOG4222|consen  397 TSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA--------------------------------  444 (1281)
T ss_pred             ccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh--------------------------------
Confidence            99998766555544422   12221111000     002222222221                                


Q ss_pred             CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                        .......+.|-..         +..|.-....      .  ..-...++++.+|.-...|.|.|.|.+..|++.+|. 
T Consensus       445 --tg~P~p~i~wl~d---------g~~v~~~d~~------~--s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa-  504 (1281)
T KOG4222|consen  445 --TGAPTPNISWLKD---------GCNVMNPDSR------I--SQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSA-  504 (1281)
T ss_pred             --hCCCCCCchhhhc---------ccccccCCcc------c--ceeeeceeeeeeeecCCCcceeeeccCcccccccce-
Confidence              1222334455421         1111111000      0  002235678888999999999999999999966653 


Q ss_pred             CCcEEecCCC---------C------CCCCCcccccccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhce
Q psy8139         777 SEPLTVTYQR---------S------PAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTF  841 (1101)
Q Consensus       777 s~~~t~~~~~---------~------P~~~p~~~~~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  841 (1101)
                        ..++....         +      |+..|..+ .+..+.+.+.|.+...           ...+|++           
T Consensus       505 --tl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~-~v~~~~v~LsW~~~s~-----------sg~vP~s-----------  559 (1281)
T KOG4222|consen  505 --TLTVEKAGSSQQFCRCEDPSALPSPPGTPGVV-NVSRTSVTLSWQPTSP-----------SGAVPAS-----------  559 (1281)
T ss_pred             --eeEhhhcCcccccccCCChhhCCCCCCCCccc-cCCCceEEecccCCCC-----------CCccccc-----------
Confidence              33332111         1      11112111 3344556677765322           3345555           


Q ss_pred             eeEEeeeeccCCCCCCcee--eeeccccccCCCCCCCCCccCcccce--eeccccccc--Cce--eecccCCCCccCCC-
Q psy8139         842 IETISSFRDKYVDNEDDYD--IVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTI--VYGYDSDDLDRHYP-  912 (1101)
Q Consensus       842 ~~Y~v~~r~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~--v~~~t~e~~P~~~P-  912 (1101)
                       .|++.+-..+..+.|...  .+....+.+.++.       +.+.|.  |+|.|..|.  |..  -.+.|.+..+..+= 
T Consensus       560 -~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~-------P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~a  631 (1281)
T KOG4222|consen  560 -GYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLK-------PNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGA  631 (1281)
T ss_pred             -hhHHHHhhhhhcccccccccccccceeeecCcC-------ccceeeeeeeccccccccCCcccCCccccCCCChhhhhh
Confidence             566655455555566543  2323444555555       999999  999999997  221  22333333222211 


Q ss_pred             --------------CCChhhhhhhhhhhccc----cccccccchhhcccccchhhhhhcccccc--cccccccCCceeEe
Q psy8139         913 --------------TLDEEEEEEDRESLVKD----RESSVKGKEEEAKVIKDDEYYENLGDVLT--KKYSLPVNSDIQIK  972 (1101)
Q Consensus       913 --------------~~v~~~~~~~n~t~v~v----p~~~~nG~i~gY~I~~~~~~y~~~~~~~~--~~~~l~~~~~~~~~  972 (1101)
                                    .......+  |+++|.+    +...-.+.|.||+|     .|+..+..+.  ............+-
T Consensus       632 d~~k~~~~ls~~l~~l~~~~~L--~asslr~~w~~~kq~~~~~i~g~~I-----~~r~~~~~~a~~s~~~v~~~t~~s~v  704 (1281)
T KOG4222|consen  632 DHQKVQRELSNELLRLSNPNVL--NASSLRLGWTKDKQHGSQYIQGYRI-----SYRSLGSQLAQWSNAGVTVPTPESVV  704 (1281)
T ss_pred             hHHHHHHhhcccceeecccccc--chhheeeeeeeecccCcccccceEE-----EeccCccccccccccceeccCCccee
Confidence                          01122233  5666666    45445789999999     9999888222  11112223333556


Q ss_pred             ecCCCCCCCceeec
Q psy8139         973 IDKPDDEPDYVIKG  986 (1101)
Q Consensus       973 i~~~~~~~~~~~~~  986 (1101)
                      +.++.+++.|.|+-
T Consensus       705 ~~nl~p~t~ye~f~  718 (1281)
T KOG4222|consen  705 VPNLKPGTNYEFFV  718 (1281)
T ss_pred             ccccCCCccceeec
Confidence            77777777777765

>KOG4194|consensus

Probab=99.84  E-value=1.2e-19  Score=196.90  Aligned_cols=220  Identities=24%  Similarity=0.391  Sum_probs=182.9

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      +.|.+.|++-+|+|.|+|++.|.+|...+.    .+.+++    ...|.|...|.++++..|+.+.|.|.+.|.|.|.|.
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysq----k~KltV----~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIa  645 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQ----KAKLTV----NQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIA  645 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhh----eeEEEe----eccCccccCcccceeecccceeeeeeccCCCCccee
Confidence            468999999999999999999999976432    334443    367999999999999999999999999999999999


Q ss_pred             EEECCEE-ee--cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee
Q psy8139         486 WYKDGFE-IF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM  562 (1101)
Q Consensus       486 W~~~g~~-~~--~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~  562 (1101)
                      |.++|.+ .+  ...+..+..+..  .+.|.|+.++|.|.|+|.|.|.+|.....+.|.|...|.+..|..   ...+..
T Consensus       646 wqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~---~~~V~~  720 (873)
T KOG4194|consen  646 WQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLE---DQLVVV  720 (873)
T ss_pred             ehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccccccc---ceEEEe
Confidence            9998875 33  234555555554  899999999999999999999999999999999999998877754   347889


Q ss_pred             CCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         563 GEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      |+++.+.|.+.|.|. |.+.|++.+.++....+..+  .+++.-+++.+....|.|.|+|...|..|.......+.+..
T Consensus       721 get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  721 GETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             cceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence            999999999999987 99999999988865443332  33456678888888999999999999999877666665553

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.74  E-value=6.8e-16  Score=170.75  Aligned_cols=208  Identities=14%  Similarity=0.224  Sum_probs=144.2

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEE-----EeccC
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-----VEGIP  480 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~-----~~g~p  480 (1101)
                      ..+.|.++...|+|.|+|.|.|..|....+     +.+++...  .+|.+...+....+.+|..+.|.|.     ..+.|
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s-----~~L~V~~~--~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~  154 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDMMS-----LNLTIVSV--SESNIDLISYPQIVNERSTGEMVCPNINAFIASNV  154 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceEEE-----EEEEEEec--CCCccceeeccceecccCcEEEECCChhhcccCCC
Confidence            357899999999999999999988764322     33333221  2233322333445678999999996     34678


Q ss_pred             CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE----EEEeecc---CCccccCCC
Q psy8139         481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEA---PPTIRLPKQ  553 (1101)
Q Consensus       481 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s----~~l~V~~---~p~~~~~~~  553 (1101)
                      .+.++|+++.. + ...++.... +  +.|.|.++...|+|.|+|.|.|..|.....    ..|.|..   ||.+..   
T Consensus       155 ~~~i~W~k~~~-~-~~~r~~~~~-~--~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~---  226 (326)
T PHA02785        155 NADIIWSGHRR-L-RNKRLKQRT-P--GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQL---  226 (326)
T ss_pred             CceEEEccCCc-c-CCcceEecC-C--CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecC---
Confidence            89999987642 2 223333322 2  389999999999999999999988875432    3455542   332322   


Q ss_pred             CCCCeEEeeCCEEEEEEEEeecCC---CeeEEEECCeecCCC-----CceEEEee--------cceEEEEEccCCCCCCe
Q psy8139         554 YEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSG-----GRYEITHT--------DRYLNLRISDARRADRG  617 (1101)
Q Consensus       554 ~~~~~~v~~g~~~~l~c~~~g~p~---~~v~W~~~g~~l~~~-----~~~~~~~~--------~~~~sl~i~~l~~~~~y  617 (1101)
                       +....+..|+.+.|.|.+.|.|.   +.+.|.+||..+...     .++.....        ...+.|.|.+++..|.|
T Consensus       227 -p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        227 -PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             -CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence             23456677999999999999886   489999999988532     12222110        01467999999999999


Q ss_pred             EEEEEEEeCCCC
Q psy8139         618 EYQAHGVNSLGE  629 (1101)
Q Consensus       618 ~y~c~A~N~~G~  629 (1101)
                      .|+|.|.|..|.
T Consensus       306 ~Y~C~A~n~~~~  317 (326)
T PHA02785        306 TFTCMAFTIPSI  317 (326)
T ss_pred             eeEEEEEeccCc
Confidence            999999998754

>KOG4194|consensus

Probab=99.67  E-value=2.5e-15  Score=163.71  Aligned_cols=213  Identities=19%  Similarity=0.328  Sum_probs=164.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEec--cCCCeEEEEECCEEeec-----CCcEEEEe-c-------CCeeEEEEee
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKDGFEIFS-----SRRQRIVT-D-------NDISTLIIHQ  514 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g~~~~~-----~~~~~~~~-~-------~~~~~l~I~~  514 (1101)
                      ...|.+...|..+....|..++|+|.+.+  ..+..+.|.+++.....     ...+.... .       ...+.|.+.|
T Consensus       501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            56788899999999999999999999876  44558999997653221     11111111 0       1134799999


Q ss_pred             cCCCCCEEEEEEEEeCCCceEE-EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCee-cCCC
Q psy8139         515 AALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP-LTSG  592 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~-l~~~  592 (1101)
                      ++..|+|.|+|.+.|..|...+ .+.++|...|.+...|.   .++...|....+.|.+.|.|.|.+.|.++|.+ .+..
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~---dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA  657 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPE---DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA  657 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeeccCccccCcc---cceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence            9999999999999999998766 68999999999986664   55888999999999999999999999998876 4332


Q ss_pred             CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccE-EEEecCCeEEEEeecC
Q psy8139         593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK-VVMTLGKSVTLSWSEP  665 (1101)
Q Consensus       593 ~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~-~~~~~~~sv~lsW~~p  665 (1101)
                      ..-.+..-.....+.|.|+.++|.|.|+|.|.|.+|..+.++.++|.+.|.+-..+. -..+.+.++.|.|...
T Consensus       658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~  731 (873)
T KOG4194|consen  658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE  731 (873)
T ss_pred             hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence            222223333456789999999999999999999999999999999998875543332 2334567888999853

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.61  E-value=1.5e-13  Score=152.04  Aligned_cols=260  Identities=17%  Similarity=0.184  Sum_probs=165.0

Q ss_pred             EEccCCeEEEEEEE-----eccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         463 TALEDEKVEFTVQV-----EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~-----~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      .+.+|+++.|.|.+     .|.|.+.++|+++|....   +......+  ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s  111 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNG--SNMLILNPTQSDSGIYICITKNETYCDMMS  111 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCC--ceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence            46679999999986     688999999999974321   11112122  258899999999999999999999888888


Q ss_pred             EEEeeccCC--ccccCCCCCCCeEEeeCCEEEEEEEE-----eecCCCeeEEEECCeecCCCCceEEEeecceEEEEEcc
Q psy8139         538 ARLRLEAPP--TIRLPKQYEDGLLFEMGEIIKLKVSM-----AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISD  610 (1101)
Q Consensus       538 ~~l~V~~~p--~~~~~~~~~~~~~v~~g~~~~l~c~~-----~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~  610 (1101)
                      +.|.|...+  .+...   .....+..|....+.|..     .+.|.+.+.|++++. + ...++...   ..+.|.|.+
T Consensus       112 ~~L~V~~~~~~~~~~~---~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~  183 (326)
T PHA02785        112 LNLTIVSVSESNIDLI---SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIED  183 (326)
T ss_pred             EEEEEEecCCCcccee---eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec---CCCeEEEee
Confidence            888876532  22211   112356678899999972     467889999987542 2 22333332   245799999


Q ss_pred             CCCCCCeEEEEEEEeCCCCceeE----EEEEEecCCCCCC---ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcC
Q psy8139         611 ARRADRGEYQAHGVNSLGEDVAS----FLVTVTDRPLPPG---KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRP  683 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~~~~s----~~l~v~~~P~~P~---~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~  683 (1101)
                      ++..|.|.|+|.|.|..|.....    ..+.|..+..||.   ...+....+.+++|.|.+...+.              
T Consensus       184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~--------------  249 (326)
T PHA02785        184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPP--------------  249 (326)
T ss_pred             cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCC--------------
Confidence            99999999999999998865432    3455544333331   11233345788999999753221              


Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCC--CCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY--DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~--~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                                       +....+.|.....  +...+...+.+......   +. ..........++|.++.......|.
T Consensus       250 -----------------~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~L~I~~V~~~D~G~Y~  308 (326)
T PHA02785        250 -----------------TTDADVFWISNGMYYEEDDEDGDGRISVANKI---YT-TDKRRVITSRLNINPVKEEDATTFT  308 (326)
T ss_pred             -----------------CCCceEEEEECCEECCCcCCCCceeEEEecCc---cc-cccceeeeEEEEECCcchhcCeeeE
Confidence                             1123577865211  00001112222222110   00 0000012356899999999999999


Q ss_pred             EEEEcCCcc
Q psy8139         762 ITAENVVGF  770 (1101)
Q Consensus       762 V~A~n~~G~  770 (1101)
                      |.|.|..|.
T Consensus       309 C~A~n~~~~  317 (326)
T PHA02785        309 CMAFTIPSI  317 (326)
T ss_pred             EEEEeccCc
Confidence            999998864

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.54  E-value=3.7e-13  Score=139.15  Aligned_cols=159  Identities=19%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             ceeEEccCCeEEEEEEEeccC-----------CCeEEEEECCEEee--c-CCc---EEEE-e--cCCeeEEEEeecCCCC
Q psy8139         460 HDTTALEDEKVEFTVQVEGIP-----------TPKVSWYKDGFEIF--S-SRR---QRIV-T--DNDISTLIIHQAALMD  519 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p-----------~~~v~W~~~g~~~~--~-~~~---~~~~-~--~~~~~~l~I~~l~~~d  519 (1101)
                      ..+.+.+|+++.|.|.+.+.|           .+.|.|++.+....  . +.+   ..+. .  ......|.|.++...|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            456789999999999987644           45899999876421  1 111   0000 0  1112489999999999


Q ss_pred             CEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-----cCCCeeEEEECCeecCCCCc
Q psy8139         520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-----MPPPTARWLHNGEPLTSGGR  594 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-----~p~~~v~W~~~g~~l~~~~~  594 (1101)
                      +|.|+|.|.|..|....+..|.|..++         ....+..|..+.|.|.+.+     .|.|+++|+++|.++..+.+
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~---------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r  180 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT---------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR  180 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC---------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence            999999999988887777888884322         1235678999999999863     45799999999999876666


Q ss_pred             eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +.+.  .+...|.|.++...|+|.|+|.|....+.
T Consensus       181 ~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        181 IQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             EEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence            5543  33568999999999999999999876443

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.42  E-value=2.5e-12  Score=114.92  Aligned_cols=96  Identities=21%  Similarity=0.263  Sum_probs=87.2

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.|...|.++.+..|+.+.|.|.+.|.|.+.+.|+++|..+....++.+......+.|+|.++...|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            56777889999999999999999999999999999999999877777777666778999999999999999999999999


Q ss_pred             ceEEEEEEeeccCCcc
Q psy8139         533 HSITKARLRLEAPPTI  548 (1101)
Q Consensus       533 ~~~~s~~l~V~~~p~~  548 (1101)
                      ....++.|.|..+|..
T Consensus        81 ~~~~~~~l~V~~~P~p   96 (98)
T cd05762          81 SRQAQVNLTVVDKPDP   96 (98)
T ss_pred             ceeEEEEEEEecCCCC
Confidence            9999999999987743

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.35  E-value=1.1e-11  Score=110.84  Aligned_cols=90  Identities=27%  Similarity=0.477  Sum_probs=83.0

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ....+..|+.+.|.|.+.|.|.+.+.|+++|.++..+.++.+......+.|+|.++...|.|.|+|.|.|..|....++.
T Consensus         8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~   87 (98)
T cd05762           8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN   87 (98)
T ss_pred             cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence            35578899999999999999999999999999998777777777677889999999999999999999999999999999


Q ss_pred             EEEecCCCCC
Q psy8139         636 VTVTDRPLPP  645 (1101)
Q Consensus       636 l~v~~~P~~P  645 (1101)
                      |.|.+.|.||
T Consensus        88 l~V~~~P~pP   97 (98)
T cd05762          88 LTVVDKPDPP   97 (98)
T ss_pred             EEEecCCCCC
Confidence            9999999988

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.27  E-value=2.8e-11  Score=105.97  Aligned_cols=88  Identities=24%  Similarity=0.328  Sum_probs=75.3

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ||.|...+.+..+..|+.+.|.|.+.|.|.|.++|++++..+....++  ...+  ..|.|.++...|+|.|+|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence            577888899999999999999999999999999999998876544322  2233  389999999999999999999999


Q ss_pred             CceEEEEEEeec
Q psy8139         532 GHSITKARLRLE  543 (1101)
Q Consensus       532 g~~~~s~~l~V~  543 (1101)
                      |....++.|.|+
T Consensus        77 G~~~~~~~l~V~   88 (88)
T cd05851          77 GKDKHQARVYVQ   88 (88)
T ss_pred             CceEEEEEEEEC
Confidence            999888888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.26  E-value=7.1e-11  Score=104.78  Aligned_cols=90  Identities=28%  Similarity=0.473  Sum_probs=79.6

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .||.|...|.++.+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++...|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            46788888999999999999999999999999999999999887766777666655679999999999999999999999


Q ss_pred             CCceEEEEEE
Q psy8139         531 AGHSITKARL  540 (1101)
Q Consensus       531 ~g~~~~s~~l  540 (1101)
                      .|....+..|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.25  E-value=2e-10  Score=118.87  Aligned_cols=111  Identities=16%  Similarity=0.203  Sum_probs=85.0

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe-----cc
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-----GI  479 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~-----g~  479 (1101)
                      +..|.|.+++..|+|.|.|.|.|..|...     ..+.+.+..          .+.+..+..|+++.|.|.+.     +.
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~-----~~i~L~V~~----------~~~~~~~~~G~~v~L~C~~~~~~~~~~  161 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEE-----STIRLTFDS----------GTINYQFNSGKDSKLHCYGTDGISSTF  161 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceE-----EEEEEEEec----------CCccceEecCCCEEEEeeCCCCccccC
Confidence            46899999999999999999999776432     224444321          12245677899999999986     34


Q ss_pred             CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       480 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.|.++|+++|..+....++.+...+  ..|.|.++..+|+|.|+|.|....+
T Consensus       162 p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        162 KDYTLTWYKNGNIVLYTDRIQLRNNN--STLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCceEEEEECCEECCCCCCEEEeCCC--CEEEECcCCHHhCEEEEEEEEEeEC
Confidence            67899999999998766665544333  3899999999999999999998643

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.22  E-value=2.1e-10  Score=101.73  Aligned_cols=90  Identities=34%  Similarity=0.604  Sum_probs=83.6

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.|...|.++.+..|+++.|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|+|.|+|.|.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            56788889999999999999999999999999999999999998888888888889999999999999999999999999


Q ss_pred             ceEEEEEEee
Q psy8139         533 HSITKARLRL  542 (1101)
Q Consensus       533 ~~~~s~~l~V  542 (1101)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            8888887765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.18  E-value=2.8e-10  Score=100.92  Aligned_cols=85  Identities=21%  Similarity=0.337  Sum_probs=72.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .|..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.|.|..|....
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            35567889999999999999999999999999999877766666544 44568999999999999999999999999887


Q ss_pred             EEEEee
Q psy8139         537 KARLRL  542 (1101)
Q Consensus       537 s~~l~V  542 (1101)
                      ...|.|
T Consensus        87 ~~~v~v   92 (92)
T cd05737          87 DVTVSV   92 (92)
T ss_pred             EEEEeC
Confidence            776654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.17  E-value=4.1e-10  Score=97.94  Aligned_cols=82  Identities=24%  Similarity=0.432  Sum_probs=71.0

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++...|+|.|+|.|.|..|....+..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            456889999999999999999999999999988753 4566665556679999999999999999999999999888777


Q ss_pred             Eee
Q psy8139         540 LRL  542 (1101)
Q Consensus       540 l~V  542 (1101)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            664

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.16  E-value=4.7e-10  Score=99.02  Aligned_cols=86  Identities=23%  Similarity=0.413  Sum_probs=71.3

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      ..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++...|.|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            34566778999999999999999999999999998876544433333344568999999999999999999999999888


Q ss_pred             EEEEee
Q psy8139         537 KARLRL  542 (1101)
Q Consensus       537 s~~l~V  542 (1101)
                      ++.|.|
T Consensus        85 ~~~L~v   90 (90)
T cd04972          85 SVQVTV   90 (90)
T ss_pred             EEEEeC
Confidence            877764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.15  E-value=2.1e-10  Score=96.07  Aligned_cols=73  Identities=27%  Similarity=0.427  Sum_probs=64.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+++.|.|.+.|.|.|.++|++++..+....++.+...+   +|.|.++...|+|.|+|.|.|..|...+++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999999887766666664433   7999999999999999999999999999888765

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.14  E-value=2.4e-10  Score=96.60  Aligned_cols=74  Identities=34%  Similarity=0.633  Sum_probs=63.6

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +|+++.|.|.+.|.|.|.++|++++..+....+..+...   +.|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            588999999999999999999999998876554444322   28999999999999999999999999988887765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.14  E-value=3.2e-10  Score=95.26  Aligned_cols=73  Identities=29%  Similarity=0.454  Sum_probs=62.0

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.|.|++++..+.. ..++.+... ++..+|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47999999999999999999998864 345555544 33458999999999999999999999999999888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.13  E-value=4.6e-10  Score=100.39  Aligned_cols=84  Identities=18%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             ceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecC-----CeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         460 HDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDN-----DISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ..+.+..|+++.|.|.+.| .|+|.+.|+++|.++.......+...+     ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567889999999999999 999999999999998755443333221     2468999999999999999999999999


Q ss_pred             eEEEEEEeec
Q psy8139         534 SITKARLRLE  543 (1101)
Q Consensus       534 ~~~s~~l~V~  543 (1101)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.13  E-value=6.6e-10  Score=99.82  Aligned_cols=90  Identities=26%  Similarity=0.499  Sum_probs=71.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEeec-----CCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIFS-----SRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~~-----~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|+++  +..+..     ..++.+....+...|+|.++..+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            45554 46788999999999999999999999999994  443321     23455444445568999999999999999


Q ss_pred             EEEEeCCCceEEEEEEee
Q psy8139         525 CTATNRAGHSITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~~~~s~~l~V  542 (1101)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888877764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>KOG0196|consensus

Probab=99.12  E-value=5.6e-10  Score=126.94  Aligned_cols=145  Identities=26%  Similarity=0.382  Sum_probs=106.2

Q ss_pred             EEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE-----------------------------------
Q psy8139         636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-----------------------------------  680 (1101)
Q Consensus       636 l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~-----------------------------------  680 (1101)
                      .-.+.+|++|.++... +.++++.|.|.+|.+.||-.-..|.|.+                                   
T Consensus       326 mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~  404 (996)
T KOG0196|consen  326 MPCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSD  404 (996)
T ss_pred             CCCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEec
Confidence            4455788999998765 9999999999999999987666666655                                   


Q ss_pred             -----------EcCCCC----CCCCcc----------cCCC------CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeC
Q psy8139         681 -----------FRPPGP----PGKPQL----------LPDS------PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT  729 (1101)
Q Consensus       681 -----------~~~~~~----p~~p~~----------~~~~------~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~  729 (1101)
                                 ..+.|.    |.++..          .|++      ...+.++++|+|..|..++|. |..|.|.|.++
T Consensus       405 L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~-ildYEvky~ek  483 (996)
T KOG0196|consen  405 LLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGV-ILDYEVKYYEK  483 (996)
T ss_pred             cccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCc-ceeEEEEEeec
Confidence                       111111    111110          0100      145789999999999888776 99999999988


Q ss_pred             CCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         730 GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +.+...... .....++.+|.+|.|+|.|.|+|+|.+.+|.|++|....+.|.+
T Consensus       484 ~~~e~~~~~-~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~  536 (996)
T KOG0196|consen  484 DEDERSYST-LKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP  536 (996)
T ss_pred             cccccceeE-EecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence            643222111 11567889999999999999999999999999999888887764

>KOG0196|consensus

Probab=99.12  E-value=1.6e-09  Score=123.45  Aligned_cols=189  Identities=19%  Similarity=0.179  Sum_probs=125.4

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCc--e------ee--cccccCccEEEEcCCCC
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--V------RA--SPHMVEDTELMVSGLEP  754 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~--~------~~--~~~~~~~~~~~i~~L~p  754 (1101)
                      .||++|..+..  +++.+++.|.|.||...+|-+-..|.|.++.-....-  .      ..  ......++++++.+|.|
T Consensus       330 ~PPSaP~nlis--~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a  407 (996)
T KOG0196|consen  330 RPPSAPRNLIS--NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA  407 (996)
T ss_pred             CCCCccceeee--ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence            45555555443  4899999999999999888888889998876542110  0      01  11224467889999999


Q ss_pred             CceEEEEEEEEcCCcc-CCCCCCCCcEEec-CCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhH
Q psy8139         755 GWRYQFRITAENVVGF-SEPGPLSEPLTVT-YQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLA  831 (1101)
Q Consensus       755 ~t~Y~~~V~A~n~~G~-g~~S~~s~~~t~~-~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~  831 (1101)
                      .+.|+|.|.|.|++-. ++.......+.++ .+.+|+..+.... .....++.+.|..|..            .++.++ 
T Consensus       408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~------------png~il-  474 (996)
T KOG0196|consen  408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQ------------PNGVIL-  474 (996)
T ss_pred             ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCC------------CCCcce-
Confidence            9999999999999743 4433333334343 3455555554443 5556667778865433            445566 


Q ss_pred             HHHhHhhhceeeEEeeeeccCCCCC-CceeeeeccccccCCCCCCCCCccCcccce--eeccccccc---CceeecccCC
Q psy8139         832 AFMLLMLFTFIETISSFRDKYVDNE-DDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSD  905 (1101)
Q Consensus       832 ~~~v~~~~~~~~Y~v~~r~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e  905 (1101)
                                 .|.|.|.++..+.. .....+..+..++.++.       |.+.|.  |+|.+..|.   +......|.+
T Consensus       475 -----------dYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~-------p~t~YvfqVRarT~aG~G~~S~~~~fqT~~  536 (996)
T KOG0196|consen  475 -----------DYEVKYYEKDEDERSYSTLKTKTTTATITGLK-------PGTVYVFQVRARTAAGYGPYSGKHEFQTLP  536 (996)
T ss_pred             -----------eEEEEEeeccccccceeEEecccceEEeeccC-------CCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence                       99999988875332 44444444566666666       999999  999998887   5555555554


Q ss_pred             C
Q psy8139         906 D  906 (1101)
Q Consensus       906 ~  906 (1101)
                      +
T Consensus       537 ~  537 (996)
T KOG0196|consen  537 S  537 (996)
T ss_pred             c
Confidence            3

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.11  E-value=7.3e-10  Score=97.44  Aligned_cols=87  Identities=25%  Similarity=0.354  Sum_probs=72.3

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ||.+...|.+..+..|+.+.|.|.+.|.|.|.++|++++..+.......  ..  ...|.|.++..+|+|.|+|.|.|..
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~--~~~L~i~~v~~~D~G~Y~C~a~N~~   76 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MS--GAVLKIPNIQFEDEGTYECEAENIK   76 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--Ee--CCEEEECCCCcccCEEEEEEEEECC
Confidence            3556667888889999999999999999999999999887665443322  12  2389999999999999999999999


Q ss_pred             CceEEEEEEee
Q psy8139         532 GHSITKARLRL  542 (1101)
Q Consensus       532 g~~~~s~~l~V  542 (1101)
                      |....++.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd04968          77 GKDTHQGRIYV   87 (88)
T ss_pred             CcEEEEEEEEE
Confidence            99988888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.11  E-value=1.1e-09  Score=95.17  Aligned_cols=82  Identities=30%  Similarity=0.547  Sum_probs=71.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++.+.|+|.|+|.|.|..|....+..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            457888999999999999999999999999998753 4566666666789999999999999999999999999887776


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.11  E-value=5.6e-10  Score=97.23  Aligned_cols=84  Identities=26%  Similarity=0.502  Sum_probs=72.0

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      |...|.+..+..|+++.|.|.+.|.|.|.+.|++++..+....++..  .++  .|.|.++...|+|.|+|.|.|..|..
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            44567788999999999999999999999999999998876555443  233  79999999999999999999999998


Q ss_pred             EEEEEEee
Q psy8139         535 ITKARLRL  542 (1101)
Q Consensus       535 ~~s~~l~V  542 (1101)
                      ..++.|.|
T Consensus        78 ~~~~~l~V   85 (85)
T cd05728          78 YASAELAV   85 (85)
T ss_pred             EEEEEEEC
Confidence            88887765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.11  E-value=1.1e-09  Score=95.89  Aligned_cols=83  Identities=28%  Similarity=0.506  Sum_probs=70.8

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEee----cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHT----DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~----~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      |+.+.|.|.+.|.|.+.+.|.+++..+... .++.+...    ...++|.|.++...|.|.|+|.|.|..|.......|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            678899999999999999999999888643 35544321    1236899999999999999999999999999999999


Q ss_pred             EecCCCCC
Q psy8139         638 VTDRPLPP  645 (1101)
Q Consensus       638 v~~~P~~P  645 (1101)
                      |.++|.+|
T Consensus        81 V~~~P~~P   88 (88)
T cd05735          81 VQEPPDPP   88 (88)
T ss_pred             EeCCCCCC
Confidence            99999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.09  E-value=1.3e-09  Score=97.65  Aligned_cols=91  Identities=23%  Similarity=0.390  Sum_probs=71.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-----CcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-----RRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+...     .++.+......+.|.|.++...|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            355665565655666899999999999999999999988765432     223333334456899999999999999999


Q ss_pred             EEeCCCceEEEEEEee
Q psy8139         527 ATNRAGHSITKARLRL  542 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V  542 (1101)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999988887765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.07  E-value=1.1e-09  Score=97.91  Aligned_cols=83  Identities=30%  Similarity=0.476  Sum_probs=69.5

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      .+..+..|+++.|.|.+.|.|.|.+.|+++|..+... ..+...  ...+.|.|.++...|+|.|+|.|.|..|....++
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            4567889999999999999999999999999988654 333332  2334799999999999999999999999998888


Q ss_pred             EEeecc
Q psy8139         539 RLRLEA  544 (1101)
Q Consensus       539 ~l~V~~  544 (1101)
                      .|.|..
T Consensus        89 ~L~V~~   94 (95)
T cd05730          89 HLKVFA   94 (95)
T ss_pred             EEEEEe
Confidence            888753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.07  E-value=1.5e-09  Score=96.26  Aligned_cols=86  Identities=26%  Similarity=0.397  Sum_probs=68.4

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCC-CeEEEEE-CCEEeec-CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCC-
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPT-PKVSWYK-DGFEIFS-SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRA-  531 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~g~~~~~-~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~-  531 (1101)
                      ..|.+..+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+... +..++|.|.++...|+|.|+|.|.|.. 
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            3466778999999999999999995 7999997 7766654 334444332 335689999999999999999999996 


Q ss_pred             CceEEEEEEee
Q psy8139         532 GHSITKARLRL  542 (1101)
Q Consensus       532 g~~~~s~~l~V  542 (1101)
                      |....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            77877877765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.07  E-value=1.3e-09  Score=92.17  Aligned_cols=74  Identities=32%  Similarity=0.504  Sum_probs=65.2

Q ss_pred             eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ++.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999999999999999999987666777766666779999999999999999999999999888877764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.07  E-value=7.8e-10  Score=93.11  Aligned_cols=73  Identities=30%  Similarity=0.470  Sum_probs=61.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecC-CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDN-DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.|+|++++..+... .++.+...+ +...|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            479999999999999999999988653 445554433 3347999999999999999999999999999888865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.07  E-value=2.2e-09  Score=94.17  Aligned_cols=86  Identities=28%  Similarity=0.415  Sum_probs=70.7

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...|.++.+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|+|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            34567888999999999999999998 899998 5777766667777666666799999999999999999999999986


Q ss_pred             E-EEEEEee
Q psy8139         535 I-TKARLRL  542 (1101)
Q Consensus       535 ~-~s~~l~V  542 (1101)
                      . .+..|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence            4 3444443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.06  E-value=1.8e-09  Score=95.64  Aligned_cols=83  Identities=25%  Similarity=0.483  Sum_probs=70.7

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ..+.+.+|+++.|.|.+.|.|.|.+.|++++.++....++.+... +...+|.|.++...|+|.|+|.|.|..|......
T Consensus         9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05737           9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV   88 (92)
T ss_pred             ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence            345788999999999999999999999999999987766666543 3456899999999999999999999999887776


Q ss_pred             EEEE
Q psy8139         635 LVTV  638 (1101)
Q Consensus       635 ~l~v  638 (1101)
                      .+.|
T Consensus        89 ~v~v   92 (92)
T cd05737          89 TVSV   92 (92)
T ss_pred             EEeC
Confidence            6653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.06  E-value=1.9e-09  Score=94.37  Aligned_cols=81  Identities=28%  Similarity=0.358  Sum_probs=68.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEec----CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTD----NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      |+.++|.|.+.|.|.+.+.|.+++..+... .++.+...    ...++|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            788999999999999999999999887643 34544321    2236899999999999999999999999999999999


Q ss_pred             eccCCc
Q psy8139         542 LEAPPT  547 (1101)
Q Consensus       542 V~~~p~  547 (1101)
                      |..+|.
T Consensus        81 V~~~P~   86 (88)
T cd05735          81 VQEPPD   86 (88)
T ss_pred             EeCCCC
Confidence            998774

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.06  E-value=1.3e-09  Score=91.08  Aligned_cols=71  Identities=34%  Similarity=0.537  Sum_probs=61.2

Q ss_pred             eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ++.|.|.+.|.|.|.++|++++..+....++.+...+   .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            3789999999999999999999988766666655444   5888899999999999999999999988887765

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.05  E-value=1.6e-09  Score=97.28  Aligned_cols=90  Identities=27%  Similarity=0.481  Sum_probs=71.8

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-----CcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-----RRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...     .++.+......+.|+|.++...|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            35553 456788999999999999999999999999988655432     233333344556899999999999999999


Q ss_pred             EEeCCCceEEEEEEee
Q psy8139         527 ATNRAGHSITKARLRL  542 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V  542 (1101)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999888877764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.05  E-value=1.1e-09  Score=95.96  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=66.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.++|++++.++....++..    ....|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   85 (88)
T cd05851          10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV   85 (88)
T ss_pred             cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            34778899999999999999999999999988765433322    24579999999999999999999999998888887


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        86 ~V   87 (88)
T cd05851          86 YV   87 (88)
T ss_pred             EE
Confidence            76

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.05  E-value=1.9e-09  Score=93.50  Aligned_cols=79  Identities=27%  Similarity=0.403  Sum_probs=64.4

Q ss_pred             CeEEEEEEEeccCCC--eEEEEECCEEeecC---CcEEE-EecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         468 EKVEFTVQVEGIPTP--KVSWYKDGFEIFSS---RRQRI-VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       468 ~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~---~~~~~-~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      ++++|.|.+.|.|.|  .++|+++|..+...   ..+.. ......++|+|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  58999999887542   23322 2223345899999999999999999999999999999999


Q ss_pred             eccCC
Q psy8139         542 LEAPP  546 (1101)
Q Consensus       542 V~~~p  546 (1101)
                      |..||
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98776

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.03  E-value=1.8e-09  Score=92.33  Aligned_cols=75  Identities=29%  Similarity=0.425  Sum_probs=64.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            678999999999999999999999888766667666666677999999999999999999999999887765443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.03  E-value=1.2e-09  Score=91.56  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=63.9

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.++|++++..+..+.++.+..   +++|.|.++.+.|.|.|+|.|.|..|....++.|+|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            5678999999999999999999998887766766643   457999999999999999999999999988887764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.03  E-value=2.1e-09  Score=91.44  Aligned_cols=74  Identities=30%  Similarity=0.543  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+++.|.|.+.|.|.|.++|+++|..+...... ......  +.|.|.++.+.|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999999999999999987653211 222222  37999999999999999999999999988888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.02  E-value=3.3e-09  Score=96.14  Aligned_cols=91  Identities=23%  Similarity=0.438  Sum_probs=68.2

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC----C-cEEEEecCCeeEEEEe--ecCCCCCEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----R-RQRIVTDNDISTLIIH--QAALMDEGEIK  524 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~----~-~~~~~~~~~~~~l~I~--~l~~~d~g~Y~  524 (1101)
                      ||.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+...    . .......+....+.+.  .+...|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            577888899999999999999999999999999999999887651    2 2222223332233333  23689999999


Q ss_pred             EEEEeCCCc-eEEEEEEee
Q psy8139         525 CTATNRAGH-SITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~-~~~s~~l~V  542 (1101)
                      |.|.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 444566655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.02  E-value=3.2e-09  Score=94.93  Aligned_cols=84  Identities=21%  Similarity=0.370  Sum_probs=69.7

Q ss_pred             CCeEEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         556 DGLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..+.+..|+.+.|.|.+.| .|.|.+.|+++|.++.......+...+     ..++|.|..+.+.|.|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4557888999999999999 899999999999999855443332221     2578999999999999999999999999


Q ss_pred             ceeEEEEEEe
Q psy8139         630 DVASFLVTVT  639 (1101)
Q Consensus       630 ~~~s~~l~v~  639 (1101)
                      .+....|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888887764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.02  E-value=3.6e-09  Score=93.55  Aligned_cols=85  Identities=21%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .|..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++..... +...+|.|.++..+|+|.|+|.|.|..|....
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            35567899999999999999999999999999988876665554333 33458999999999999999999999999888


Q ss_pred             EEEEee
Q psy8139         537 KARLRL  542 (1101)
Q Consensus       537 s~~l~V  542 (1101)
                      +..|.|
T Consensus        87 ~~~v~~   92 (92)
T cd05891          87 DVTVSV   92 (92)
T ss_pred             EEEEEC
Confidence            776654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.02  E-value=3.1e-09  Score=95.21  Aligned_cols=83  Identities=24%  Similarity=0.313  Sum_probs=68.7

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec------CCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD------NDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~------~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|.++...........      ...+.|.|.++...|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45678899999999999999999999999999876543322211      123589999999999999999999999999


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.01  E-value=3.6e-09  Score=93.83  Aligned_cols=89  Identities=30%  Similarity=0.487  Sum_probs=74.5

Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      ||.+...|   ....+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+......++|.|.++...|.|.|.|.|.
T Consensus         3 ~~~~~~~p---~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           3 PATILTKP---RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCcccccC---ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence            45554444   345889999999999999999999999999999877777777666667899999999999999999999


Q ss_pred             eCCCCceeEEEE
Q psy8139         625 NSLGEDVASFLV  636 (1101)
Q Consensus       625 N~~G~~~~s~~l  636 (1101)
                      |..|....+..|
T Consensus        80 N~~G~~~~~~~l   91 (92)
T cd05747          80 NSEGKQEAQFTL   91 (92)
T ss_pred             cCCCCEeEEEEe
Confidence            999987766554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.01  E-value=2.7e-09  Score=90.17  Aligned_cols=73  Identities=29%  Similarity=0.406  Sum_probs=61.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+... .+...|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999988743 45555433 34457999999999999999999999999988887765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.01  E-value=1.6e-09  Score=91.67  Aligned_cols=74  Identities=27%  Similarity=0.459  Sum_probs=63.4

Q ss_pred             eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +|+.+.|.|.+.|.|.|.++|++++..+.....+.+..   .++|.|.++.+.|.|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            47889999999999999999999999887655544432   458999999999999999999999999888877764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.00  E-value=3.6e-09  Score=93.85  Aligned_cols=82  Identities=28%  Similarity=0.529  Sum_probs=64.8

Q ss_pred             CeeeecCceeEEc---cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139         453 PSFIRALHDTTAL---EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT  528 (1101)
Q Consensus       453 P~~~~~p~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~  528 (1101)
                      |.|+..|.++.+.   .|+.+.|.|.+.|.|.|.++|+++|..+...........++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence            5677777776654   46899999999999999999999999886543333333333  78998885 699999999999


Q ss_pred             eCCCceEE
Q psy8139         529 NRAGHSIT  536 (1101)
Q Consensus       529 n~~g~~~~  536 (1101)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.00  E-value=2.3e-09  Score=90.12  Aligned_cols=73  Identities=25%  Similarity=0.454  Sum_probs=60.9

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCC-CCceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|++++..+.. +.++.+...+ +..+|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            36899999999999999999999874 3456554432 3358999999999999999999999999888887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.00  E-value=2.2e-09  Score=91.10  Aligned_cols=74  Identities=23%  Similarity=0.407  Sum_probs=61.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCc-EEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+++.|.|.+.|.|.|.|+|+++|.++..... ......++  .|.|.++.+.|+|.|+|.|.|..|...+++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            67899999999999999999999998854321 11222332  7999999999999999999999999999988876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.00  E-value=2.4e-09  Score=90.25  Aligned_cols=73  Identities=27%  Similarity=0.378  Sum_probs=63.6

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+.+.|.|.+.|.|.|.++|++++..+....++.+...+   .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999988766666654333   7999999999999999999999999988887765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.99  E-value=2.6e-09  Score=91.45  Aligned_cols=79  Identities=20%  Similarity=0.281  Sum_probs=63.7

Q ss_pred             CeEEEEEEEec--cCCCeEEEEECCEEeec--C-CcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         468 EKVEFTVQVEG--IPTPKVSWYKDGFEIFS--S-RRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       468 ~~v~L~C~~~g--~p~~~v~W~~~g~~~~~--~-~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      +++.|.|.+.+  .+.+.+.|+++|..+..  . .++..... ...+.|+|.+++..|+|.|+|.|.|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            46889999977  44778999999999862  2 23333221 2234899999999999999999999999999999999


Q ss_pred             eccCC
Q psy8139         542 LEAPP  546 (1101)
Q Consensus       542 V~~~p  546 (1101)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            99887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.98  E-value=6.8e-09  Score=92.17  Aligned_cols=82  Identities=26%  Similarity=0.396  Sum_probs=63.7

Q ss_pred             CeeeecCceeEEccC---CeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139         453 PSFIRALHDTTALED---EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT  528 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~  528 (1101)
                      |.|...|.++.+.+|   ++++|.|.+.|.|.|.++|+++|..+...........++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence            567777888877665   579999999999999999999999886432222222222  78898865 589999999999


Q ss_pred             eCCCceEE
Q psy8139         529 NRAGHSIT  536 (1101)
Q Consensus       529 n~~g~~~~  536 (1101)
                      |..|...+
T Consensus        80 N~~G~~~s   87 (94)
T cd05850          80 NRCGTVVS   87 (94)
T ss_pred             cCcCcEEE
Confidence            99998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.97  E-value=4.6e-09  Score=88.90  Aligned_cols=73  Identities=37%  Similarity=0.639  Sum_probs=64.8

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|+++|..+..+.++.+...+..+.|.|.++.+.|.|.|+|.|.|..|..+.+..|.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            5799999999999999999999997777777776667889999999999999999999999999887777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.97  E-value=7.1e-09  Score=94.75  Aligned_cols=101  Identities=27%  Similarity=0.315  Sum_probs=75.0

Q ss_pred             ccCCccccCCCCCCCeEE-eeCCEEEEEEEEeecCCCeeEEEECCeecCC-CCceEEEee----cceEEEEEccCC-CCC
Q psy8139         543 EAPPTIRLPKQYEDGLLF-EMGEIIKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHT----DRYLNLRISDAR-RAD  615 (1101)
Q Consensus       543 ~~~p~~~~~~~~~~~~~v-~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~----~~~~sl~i~~l~-~~~  615 (1101)
                      ..+|.+..++........ ..|..+.|.|.+.|.|.+.+.|+++|..+.. +.++.+...    ...+.|.|.++. ..|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            456666666543211111 2457899999999999999999999998864 334443221    124679999997 589


Q ss_pred             CeEEEEEEEeCCCCceeEEEEEEecCCC
Q psy8139         616 RGEYQAHGVNSLGEDVASFLVTVTDRPL  643 (1101)
Q Consensus       616 ~y~y~c~A~N~~G~~~~s~~l~v~~~P~  643 (1101)
                      .|.|+|.|.|..|.......|.+..+|+
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            9999999999999999999999987764

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.97  E-value=8.2e-09  Score=91.10  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=68.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L   88 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV   88 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence            34588899999999999999999999999988765443333333446789999999999999999999999998888776


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        89 ~v   90 (90)
T cd04972          89 TV   90 (90)
T ss_pred             eC
Confidence            53

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.97  E-value=6.5e-09  Score=90.82  Aligned_cols=81  Identities=25%  Similarity=0.402  Sum_probs=66.0

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      ..+..|..+.|.|.+.|.|.|.+.|+++|..+....... .........|.|.++.+.|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            357789999999999999999999999999886543321 1112334579999999999999999999999998888877


Q ss_pred             ee
Q psy8139         541 RL  542 (1101)
Q Consensus       541 ~V  542 (1101)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            65

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.96  E-value=3.2e-09  Score=86.58  Aligned_cols=65  Identities=28%  Similarity=0.413  Sum_probs=55.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.++|+++|..+...        ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            468999999999999999999988532        22348999999999999999999999998777666554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.96  E-value=3.2e-09  Score=92.90  Aligned_cols=59  Identities=36%  Similarity=0.647  Sum_probs=46.5

Q ss_pred             CCCCcceEEEEEEeCCCCC-ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         715 GGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       715 ~~~~i~~Y~V~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +++.+.+|.|.|...++.. |..... ....+.++|.+|.|++.|.|+|.|.|..|.|++|
T Consensus        26 ~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S   85 (85)
T PF00041_consen   26 GNGPITGYRVEYRSVNSTSDWQEVTV-PGNETSYTITGLQPGTTYEFRVRAVNSDGEGPPS   85 (85)
T ss_dssp             TSSSESEEEEEEEETTSSSEEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred             CCCCeeEEEEEEEecccceeeeeeee-eeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence            3456888888888877665 444433 2556699999999999999999999999998764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.96  E-value=8.1e-09  Score=91.20  Aligned_cols=80  Identities=25%  Similarity=0.389  Sum_probs=62.5

Q ss_pred             CeeeecCceeEEccC---CeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecC-CCCCEEEEEEE
Q psy8139         453 PSFIRALHDTTALED---EKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAA-LMDEGEIKCTA  527 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a  527 (1101)
                      |.|...|.++.+.++   ..+.|.|.+.|.|.|.++|++++..+... .++. . .++  .|.|.++. ..|+|.|+|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~-~~g--~L~I~~~~~~~D~G~Y~C~A   77 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-M-VGG--NLVINNPDKYKDAGRYVCIV   77 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-E-ECC--EEEECcCCcCCCCEEEEEEE
Confidence            566667777665544   47999999999999999999999887533 3332 2 233  79999985 68999999999


Q ss_pred             EeCCCceEE
Q psy8139         528 TNRAGHSIT  536 (1101)
Q Consensus       528 ~n~~g~~~~  536 (1101)
                      .|..|...+
T Consensus        78 ~N~~G~~~s   86 (93)
T cd05849          78 SNIYGKVRS   86 (93)
T ss_pred             EeCcceEEE
Confidence            999998755

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.95  E-value=9.5e-09  Score=93.90  Aligned_cols=95  Identities=22%  Similarity=0.325  Sum_probs=72.0

Q ss_pred             CCeeeecCceeEE----ccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEe--c--CCeeEEEEeecC-CCCCE
Q psy8139         452 APSFIRALHDTTA----LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVT--D--NDISTLIIHQAA-LMDEG  521 (1101)
Q Consensus       452 ~P~~~~~p~~~~v----~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~--~--~~~~~l~I~~l~-~~d~g  521 (1101)
                      +|.|...|....+    ..|..++|.|.+.|.|.+.++|+++|..+... .++....  .  ...+.|+|.++. ..|.|
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G   83 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA   83 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence            4555554442222    24678999999999999999999999988643 3333221  1  113589999997 58999


Q ss_pred             EEEEEEEeCCCceEEEEEEeeccCC
Q psy8139         522 EIKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      .|+|.|.|..|.......|.|..+|
T Consensus        84 ~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          84 LFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEeCCccCcEEEEEEecCCC
Confidence            9999999999999999999998776

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.94  E-value=4.6e-09  Score=89.53  Aligned_cols=74  Identities=27%  Similarity=0.432  Sum_probs=61.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...... .....  ...|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999988654332 22222  248999999999999999999999999988888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.94  E-value=6.4e-09  Score=90.68  Aligned_cols=79  Identities=24%  Similarity=0.391  Sum_probs=63.4

Q ss_pred             CeEEEEEEEeccCCC--eEEEEECCEEeecCC---cEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         468 EKVEFTVQVEGIPTP--KVSWYKDGFEIFSSR---RQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       468 ~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~---~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      +++.|.|.+.|.|.|  .+.|+++|..+....   .+. .......+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468899999999987  679999999876432   121 11222345899999999999999999999999999999999


Q ss_pred             eccCC
Q psy8139         542 LEAPP  546 (1101)
Q Consensus       542 V~~~p  546 (1101)
                      |..||
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.94  E-value=8.9e-09  Score=89.35  Aligned_cols=78  Identities=21%  Similarity=0.325  Sum_probs=63.9

Q ss_pred             EEEEEEEEeecCCC--eeEEEECCeecCCC---CceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         565 IIKLKVSMAGMPPP--TARWLHNGEPLTSG---GRYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       565 ~~~l~c~~~g~p~~--~v~W~~~g~~l~~~---~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ++.|.|.+.|+|.|  .+.|+++|.++...   .++. +......++|+|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V   81 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV   81 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence            57899999999977  68999999887542   2332 222234578999999999999999999999999999999999


Q ss_pred             ecCC
Q psy8139         639 TDRP  642 (1101)
Q Consensus       639 ~~~P  642 (1101)
                      .++|
T Consensus        82 ~~~P   85 (85)
T cd05854          82 RGPP   85 (85)
T ss_pred             ECCC
Confidence            8765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.94  E-value=7.7e-09  Score=88.40  Aligned_cols=75  Identities=25%  Similarity=0.424  Sum_probs=64.1

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            578899999999999999999999888776677666666678999999999999999999999999876554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.93  E-value=4.9e-09  Score=88.28  Aligned_cols=73  Identities=26%  Similarity=0.472  Sum_probs=60.2

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|++++.++... .++.+...+ +...|.|.++.+.|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            368999999999999999999988753 445554332 2347999999999999999999999999988887764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.93  E-value=3.8e-09  Score=87.85  Aligned_cols=68  Identities=28%  Similarity=0.555  Sum_probs=58.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      +.|.|.+.|.|.|.++|+++|..+....++.+...   +.|.|.++...|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            46899999999999999999988876666554333   389999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.92  E-value=1e-08  Score=90.16  Aligned_cols=80  Identities=20%  Similarity=0.384  Sum_probs=65.0

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-E
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-K  537 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s  537 (1101)
                      +.+..+.+|++++|.|.+.|. .|.+.|++++..+... ++.+...  ...|.|.++...|+|.|+|.|.|..|...+ .
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence            456788999999999999999 9999999999887543 3433322  348999999999999999999999998655 4


Q ss_pred             EEEee
Q psy8139         538 ARLRL  542 (1101)
Q Consensus       538 ~~l~V  542 (1101)
                      +.|.|
T Consensus        86 ~~L~V   90 (91)
T cd05740          86 YILNV   90 (91)
T ss_pred             EEEEe
Confidence            55655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.90  E-value=1.3e-08  Score=91.32  Aligned_cols=83  Identities=23%  Similarity=0.344  Sum_probs=68.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe------ecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH------TDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ...+..|..+.|.|.+.|.|.|.+.|+++|.++..+.......      ....++|.|.++...|.|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            4467778999999999999999999999999987654332221      1124689999999999999999999999998


Q ss_pred             eeEEEEEEe
Q psy8139         631 VASFLVTVT  639 (1101)
Q Consensus       631 ~~s~~l~v~  639 (1101)
                      +.+..+.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888887764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.90  E-value=8.6e-09  Score=86.18  Aligned_cols=70  Identities=26%  Similarity=0.509  Sum_probs=59.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.++|+++|..+.....+.+..   ...+.|.++.+.|.|.|+|.|.|..|....++.|.|
T Consensus         2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~---~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK---EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe---cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            5799999999999999999999887666655543   345788899999999999999999999888877754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.90  E-value=1.7e-08  Score=90.22  Aligned_cols=81  Identities=28%  Similarity=0.541  Sum_probs=68.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|.++|..+... ..+..  ....+.|.|.++...|.|.|+|.|.|..|....+..
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            446788999999999999999999999999988754 33332  233557999999999999999999999999888888


Q ss_pred             EEEe
Q psy8139         636 VTVT  639 (1101)
Q Consensus       636 l~v~  639 (1101)
                      |.|.
T Consensus        90 L~V~   93 (95)
T cd05730          90 LKVF   93 (95)
T ss_pred             EEEE
Confidence            8775

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.89  E-value=1.1e-08  Score=89.08  Aligned_cols=78  Identities=33%  Similarity=0.518  Sum_probs=67.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+....++...    .+.|.|.++...|.|.|+|.|.|..|....++.|
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL   83 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence            347888999999999999999999999999998766555443    4579999999999999999999999998877776


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        84 ~V   85 (85)
T cd05728          84 AV   85 (85)
T ss_pred             EC
Confidence            54

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.89  E-value=1.1e-08  Score=87.35  Aligned_cols=73  Identities=19%  Similarity=0.349  Sum_probs=59.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...|.++.+..|+++.|.|.+.|.|.| .|+|.++|.++...  .    ....+.|.|.++  .|+|.|.|.|.|..|..
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            345778899999999999999999999 79999999987541  1    122247888887  47899999999999976


Q ss_pred             EE
Q psy8139         535 IT  536 (1101)
Q Consensus       535 ~~  536 (1101)
                      .+
T Consensus        74 ~s   75 (81)
T cd05749          74 TS   75 (81)
T ss_pred             Ee
Confidence            65

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.89  E-value=7e-09  Score=86.75  Aligned_cols=70  Identities=27%  Similarity=0.459  Sum_probs=57.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.+.|++++..+.... ....  .....|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4689999999999999999987665432 2222  22348999999999999999999999999888877776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.88  E-value=1e-08  Score=87.76  Aligned_cols=78  Identities=21%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             EEEEEEEEeecC--CCeeEEEECCeecCC---CCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         565 IIKLKVSMAGMP--PPTARWLHNGEPLTS---GGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       565 ~~~l~c~~~g~p--~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ++.|.|.+.++|  .+.+.|+++|.++..   +.++..... ...++|.|.+++..|.|+|+|.|.|..+..+.++.|.|
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V   81 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV   81 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence            578999998855  789999999999963   234433211 23568999999999999999999999999999999999


Q ss_pred             ecCC
Q psy8139         639 TDRP  642 (1101)
Q Consensus       639 ~~~P  642 (1101)
                      .+||
T Consensus        82 ~~pP   85 (85)
T cd05853          82 RGPP   85 (85)
T ss_pred             ecCC
Confidence            9776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.88  E-value=1.1e-08  Score=87.08  Aligned_cols=71  Identities=24%  Similarity=0.480  Sum_probs=56.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCC-cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSR-RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ++|.|.+.|.|.|.++|+++|.++.... .+.+..  ....|.|.++.++|+|.|+|.|.|..|...++..+.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            4799999999999999999999886543 333332  2348999999999999999999999998765444333

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.88  E-value=2.1e-08  Score=88.82  Aligned_cols=83  Identities=39%  Similarity=0.640  Sum_probs=75.9

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ..+.+..|+++.|.|.+.+.|.+.+.|+++|..+..+.++.+...+...+|.|.++...|.|.|+|.|.|..|.......
T Consensus         8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~   87 (90)
T PF07679_consen    8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN   87 (90)
T ss_dssp             SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence            35578899999999999999999999999999999888888888888999999999999999999999999998888877


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      |.|
T Consensus        88 l~V   90 (90)
T PF07679_consen   88 LTV   90 (90)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.88  E-value=1.1e-08  Score=86.68  Aligned_cols=74  Identities=26%  Similarity=0.331  Sum_probs=60.6

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCce-EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.++|+++|.++...... ....  +...+.|.++++.|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            567889999999999999999999988643211 1111  2347899999999999999999999999999888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.88  E-value=1.7e-08  Score=90.12  Aligned_cols=85  Identities=29%  Similarity=0.515  Sum_probs=65.4

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc--EEEEecCCeeEEEEeec-----CCCCCEEEEEEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR--QRIVTDNDISTLIIHQA-----ALMDEGEIKCTA  527 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~l~I~~l-----~~~d~g~Y~C~a  527 (1101)
                      |...|.+..+..|+++.|.|.+.|.|.|.+.|+++|..+.....  ......+   ++.|.++     ...|.|.|+|.|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence            44567788889999999999999999999999999998865432  3332222   5777776     578999999999


Q ss_pred             EeC-CCceEE-EEEEee
Q psy8139         528 TNR-AGHSIT-KARLRL  542 (1101)
Q Consensus       528 ~n~-~g~~~~-s~~l~V  542 (1101)
                      .|. .|...+ .+.|.|
T Consensus        79 ~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          79 QNDSLGSIVSRTARLTV   95 (95)
T ss_pred             ECCccCcEEEeeeEEeC
Confidence            999 887644 455543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.87  E-value=3e-08  Score=87.64  Aligned_cols=84  Identities=29%  Similarity=0.426  Sum_probs=64.6

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCc-
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGH-  533 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~-  533 (1101)
                      ..|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+... ...++|+|.++..+|+|.|+|.|.|..|. 
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            4566788999999999999999975 999997 5666655444444333 34569999999999999999999998654 


Q ss_pred             eEEEEEEe
Q psy8139         534 SITKARLR  541 (1101)
Q Consensus       534 ~~~s~~l~  541 (1101)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            44455554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.87  E-value=1.7e-08  Score=83.51  Aligned_cols=68  Identities=22%  Similarity=0.375  Sum_probs=55.1

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      |++++|.|.+.|.|.|.|+|++++..+.....+..    +...|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999988765443221    22378898874  7999999999999988777665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.87  E-value=1.3e-08  Score=89.91  Aligned_cols=77  Identities=30%  Similarity=0.440  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      |+++.|.|.+.|.|.|.+.|++++..+.        ...++.+...   ..|+|.++...|+|.|+|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            6789999999999999999999876431        1233433222   2799999999999999999999999999999


Q ss_pred             EEeeccCC
Q psy8139         539 RLRLEAPP  546 (1101)
Q Consensus       539 ~l~V~~~p  546 (1101)
                      .|.|....
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99987643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.87  E-value=1.7e-08  Score=85.31  Aligned_cols=73  Identities=27%  Similarity=0.444  Sum_probs=60.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCC-CceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+... .+..+|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            368999999999999999999998743 45554433 23457999999999999999999999999888877654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.87  E-value=2.8e-08  Score=87.87  Aligned_cols=83  Identities=23%  Similarity=0.472  Sum_probs=69.3

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... ...+|.|.++++.|.|.|+|.|.|..|....+.
T Consensus         9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV   88 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence            3557889999999999999999999999999988766665544332 345799999999999999999999999988877


Q ss_pred             EEEE
Q psy8139         635 LVTV  638 (1101)
Q Consensus       635 ~l~v  638 (1101)
                      .|.|
T Consensus        89 ~v~~   92 (92)
T cd05891          89 TVSV   92 (92)
T ss_pred             EEEC
Confidence            6654

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.87  E-value=1.4e-08  Score=86.98  Aligned_cols=79  Identities=19%  Similarity=0.383  Sum_probs=64.5

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      |.+..+..|+++.|.|.+.+. .+.+.|+++|.++....++.+.  ++  .|.|.++..+|+|.|+|.|.|..|.....+
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            456778899999999999986 5689999999988766555542  32  799999999999999999999988876665


Q ss_pred             EEee
Q psy8139         539 RLRL  542 (1101)
Q Consensus       539 ~l~V  542 (1101)
                      .|.|
T Consensus        76 ~v~V   79 (79)
T cd04973          76 SVNV   79 (79)
T ss_pred             EEeC
Confidence            5543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.87  E-value=2.1e-08  Score=87.90  Aligned_cols=81  Identities=38%  Similarity=0.539  Sum_probs=65.1

Q ss_pred             cCceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         458 ALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      .|.+..+..|+++.|.|.+ .|.|.|.+.|++++..+... .++.+.. +  +.|.|.++...|+|.|+|.|.|..|...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCcee
Confidence            3567788999999999998 79999999999999987753 3444333 2  3899999999999999999999999865


Q ss_pred             E-EEEEe
Q psy8139         536 T-KARLR  541 (1101)
Q Consensus       536 ~-s~~l~  541 (1101)
                      + .+.|.
T Consensus        79 s~~~~l~   85 (86)
T cd05724          79 SAAARLS   85 (86)
T ss_pred             eeeEEEE
Confidence            4 34443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.86  E-value=1.9e-08  Score=85.52  Aligned_cols=72  Identities=29%  Similarity=0.507  Sum_probs=60.8

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCC---ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG---RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.++|+++|.++....   .+.+    ..+.|.|.++++.|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            5788999999999999999999999886432   2222    2567999999999999999999999999888877766

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.86  E-value=1.4e-08  Score=85.66  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=63.0

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.++|++++..+....++.+..   .++|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            5678999999999999999999999887666665542   457999999999999999999999999888877764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.86  E-value=3e-08  Score=89.02  Aligned_cols=88  Identities=25%  Similarity=0.311  Sum_probs=69.1

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecC--CcEEEEec----CCeeEEEEeecCCCC-CEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSS--RRQRIVTD----NDISTLIIHQAALMD-EGEI  523 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~l~I~~l~~~d-~g~Y  523 (1101)
                      ||.+ ..+....+..|+++.|.|.+.|.|.| .+.|++++..+...  .++.+...    +..+.|+|.++...| .|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            4444 34566778999999999999999999 69999999887643  45555433    234589999999955 8999


Q ss_pred             EEEEEeCCCceEEEEEE
Q psy8139         524 KCTATNRAGHSITKARL  540 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l  540 (1101)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999988776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.85  E-value=1.1e-08  Score=84.64  Aligned_cols=68  Identities=26%  Similarity=0.411  Sum_probs=55.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.++|+++|.++.....+  . .+  ..|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            368999999999999999999998654322  1 22  37999999999999999999999998777655544

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.85  E-value=3e-08  Score=88.87  Aligned_cols=80  Identities=26%  Similarity=0.465  Sum_probs=64.0

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .+..|+.+.|.|.+.|.|.|.++|++++..+...     .++.+......+.|.|.++...|.|.|+|.|.|..|....+
T Consensus        13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence            4445799999999999999999999988776432     22333333345789999999999999999999999998888


Q ss_pred             EEEEE
Q psy8139         634 FLVTV  638 (1101)
Q Consensus       634 ~~l~v  638 (1101)
                      ..|.|
T Consensus        93 ~~l~v   97 (97)
T cd05869          93 MYLEV   97 (97)
T ss_pred             EEEEC
Confidence            77654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.84  E-value=1.4e-08  Score=86.05  Aligned_cols=71  Identities=31%  Similarity=0.581  Sum_probs=56.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEee---cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIF---SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~---~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.++|++++....   ...++.+...+  ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999999999999999886422   22233333333  38999999999999999999999999888888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.84  E-value=2.9e-08  Score=88.07  Aligned_cols=80  Identities=29%  Similarity=0.368  Sum_probs=64.0

Q ss_pred             EEeeCCEEEEEEEEeecCC-CeeEEEE-CCeecCC-CCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCC-CCceeE
Q psy8139         559 LFEMGEIIKLKVSMAGMPP-PTARWLH-NGEPLTS-GGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSL-GEDVAS  633 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~-~~v~W~~-~g~~l~~-~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~-G~~~~s  633 (1101)
                      .+..|+++.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... +..++|.|.++++.|.|.|+|.|.|.. |....+
T Consensus        11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s   90 (96)
T cd05865          11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT   90 (96)
T ss_pred             EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence            5778999999999999995 7999997 7776654 334444332 235789999999999999999999996 777777


Q ss_pred             EEEEE
Q psy8139         634 FLVTV  638 (1101)
Q Consensus       634 ~~l~v  638 (1101)
                      +.|.|
T Consensus        91 ~~l~v   95 (96)
T cd05865          91 VNVKI   95 (96)
T ss_pred             EEEEE
Confidence            77765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.84  E-value=1.6e-08  Score=82.40  Aligned_cols=64  Identities=27%  Similarity=0.425  Sum_probs=55.1

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.|.+.|.|.|.+.|+++|.++...        ...+.|.|.++...|.|.|+|.|.|..|....+..+.+
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           2 KLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             EEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            58999999999999999999988632        12568999999999999999999999998777766655

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.84  E-value=2.3e-08  Score=85.58  Aligned_cols=70  Identities=20%  Similarity=0.356  Sum_probs=56.6

Q ss_pred             EEEEEeccCCCeEEEEECCEEeecCCcEEEEe-------cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-------DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       472 L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-------~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      |.|.+.|.|.|.|+|+++|..+..........       ....+.|.|.++...|+|.|+|.|.|..|....+..|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            68999999999999999999987665432221       12345799999999999999999999999988766554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.84  E-value=2e-08  Score=85.58  Aligned_cols=75  Identities=28%  Similarity=0.354  Sum_probs=62.2

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...... .......+.|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            577899999999999999999999988654322 112233578999999999999999999999999888887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.84  E-value=3.2e-08  Score=86.97  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.......    ...+.|.|.++...|+|.|+|.|.|..|....++.|
T Consensus        10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (88)
T cd04968          10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI   85 (88)
T ss_pred             ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence            3467889999999999999999999999887665443322    235789999999999999999999999998888877


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        86 ~V   87 (88)
T cd04968          86 YV   87 (88)
T ss_pred             EE
Confidence            76

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.84  E-value=2.7e-08  Score=86.92  Aligned_cols=80  Identities=24%  Similarity=0.430  Sum_probs=65.3

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      .+..|..+.|.|.+.|.|.|.+.|+++|..+..+.... ........+|.|.++.+.|.|.|+|.|.|..|....+..|.
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            46679999999999999999999999999987554321 12223356799999999999999999999999988877765


Q ss_pred             E
Q psy8139         638 V  638 (1101)
Q Consensus       638 v  638 (1101)
                      |
T Consensus        85 v   85 (85)
T cd05857          85 V   85 (85)
T ss_pred             C
Confidence            4

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.83  E-value=1.7e-08  Score=83.93  Aligned_cols=69  Identities=36%  Similarity=0.553  Sum_probs=56.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ++|.|.+.|.|.|.+.|++++..+.. .++.....   ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            47899999999999999999876643 34444422   38999999999999999999999999888877764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.82  E-value=1.3e-08  Score=84.68  Aligned_cols=68  Identities=29%  Similarity=0.546  Sum_probs=58.4

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +.|.|.+.|.|.|.+.|+++|..+..+.++.+..   .+.|.|.++...|.|.|+|.|.|..|..+.+..|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            3689999999999999999999887666665543   4589999999999999999999999998777655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.82  E-value=2e-08  Score=83.81  Aligned_cols=69  Identities=26%  Similarity=0.493  Sum_probs=57.0

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.+.|+++|..+.....+.  ..+  ..|.|.++...|+|.|+|.|.|..|....+..+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--KSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--cCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            4689999999999999999999887654322  222  48999999999999999999999998777666554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.82  E-value=2.2e-08  Score=88.25  Aligned_cols=76  Identities=25%  Similarity=0.424  Sum_probs=58.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEEC----CEEeecCCc--EEEEec-------CCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKD----GFEIFSSRR--QRIVTD-------NDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~----g~~~~~~~~--~~~~~~-------~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |+++.|.|.+.|.|.|.|+|+++    +..+.....  ..+...       ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    443332221  111111       12358999999999999999999999999


Q ss_pred             eEEEEEEee
Q psy8139         534 SITKARLRL  542 (1101)
Q Consensus       534 ~~~s~~l~V  542 (1101)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.82  E-value=2.9e-08  Score=89.14  Aligned_cols=82  Identities=21%  Similarity=0.392  Sum_probs=65.4

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--CeecCC-----CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPLTS-----GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l~~-----~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +..+..|+.+.|.|.+.|.|.|.+.|++.  +..+..     +.++.+.......+|.|.++++.|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            45788899999999999999999999984  433321     23455544444678999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy8139         630 DVASFLVTV  638 (1101)
Q Consensus       630 ~~~s~~l~v  638 (1101)
                      ...+..|.|
T Consensus        90 ~~~~~~l~~   98 (98)
T cd05870          90 HQKSMYLDI   98 (98)
T ss_pred             ceeEEEEeC
Confidence            888777653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.82  E-value=3.5e-08  Score=83.46  Aligned_cols=73  Identities=27%  Similarity=0.513  Sum_probs=58.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+......   ..|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 5666554444433332   27999999999999999999999998877776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.81  E-value=2.4e-08  Score=84.22  Aligned_cols=69  Identities=17%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             EEEEEeccCCCeEEEEECCEEeecCCcEEE--E---ecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRI--V---TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       472 L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--~---~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      |.|.+.|.|.|.|+|+++|..+....+...  .   .....+.|.|.++...|+|.|+|.|.|..|....+..+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~   76 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA   76 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence            689999999999999999999976554321  1   11234589999999999999999999999987776544

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.81  E-value=2.9e-08  Score=86.51  Aligned_cols=78  Identities=24%  Similarity=0.330  Sum_probs=63.1

Q ss_pred             EEEEEEEEeecCCC--eeEEEECCeecCCCC---ceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         565 IIKLKVSMAGMPPP--TARWLHNGEPLTSGG---RYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       565 ~~~l~c~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ++.|.|.+.|.|.|  .+.|+++|.++....   .+. .......++|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   81 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV   81 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence            57899999999977  679999998875321   222 222234678999999999999999999999999999999999


Q ss_pred             ecCC
Q psy8139         639 TDRP  642 (1101)
Q Consensus       639 ~~~P  642 (1101)
                      .++|
T Consensus        82 ~~pP   85 (85)
T cd04970          82 RGPP   85 (85)
T ss_pred             ECCC
Confidence            9765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.81  E-value=2.1e-08  Score=84.68  Aligned_cols=70  Identities=27%  Similarity=0.515  Sum_probs=56.0

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-EEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-ITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V  542 (1101)
                      ++|.|.+.|.|.|.++|++++.++..  ..++.... +  +.|.|.++...|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR-S--GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC-C--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            47899999999999999999988763  34444322 2  279999999999999999999999985 44566665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.80  E-value=2.1e-08  Score=87.01  Aligned_cols=78  Identities=21%  Similarity=0.369  Sum_probs=62.6

Q ss_pred             EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      .+..|+++.|.|.+.|.|.|.+.|++++..+.......  .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            45679999999999999999999999988765433222  1223458999999999999999999999998777766654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.80  E-value=5.8e-08  Score=85.16  Aligned_cols=79  Identities=22%  Similarity=0.393  Sum_probs=64.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFL  635 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~  635 (1101)
                      ..+..|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|.. ..+..
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~   88 (92)
T cd05866          10 VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV   88 (92)
T ss_pred             eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence            46778999999999999998 999997 5777766667777655556799999999999999999999999975 34444


Q ss_pred             EE
Q psy8139         636 VT  637 (1101)
Q Consensus       636 l~  637 (1101)
                      |.
T Consensus        89 l~   90 (92)
T cd05866          89 LE   90 (92)
T ss_pred             EE
Confidence            43

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.79  E-value=4.7e-08  Score=83.65  Aligned_cols=71  Identities=24%  Similarity=0.422  Sum_probs=57.4

Q ss_pred             EEEEEeecCCCeeEEEECCeecCCCCceEEEe-------ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-------TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       568 l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.+.|.|.|.++|+++|..+..+.......       ....+.|.|.++...|.|.|+|.|.|..|....+..+..
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            68999999999999999999997665432221       123567999999999999999999999999877766543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.79  E-value=2.9e-08  Score=84.46  Aligned_cols=74  Identities=28%  Similarity=0.496  Sum_probs=60.7

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +.|.|.+.|.|.|.+.|++++..+.......+...+....|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999998765433333333334489999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.79  E-value=5.3e-08  Score=87.30  Aligned_cols=82  Identities=26%  Similarity=0.408  Sum_probs=66.5

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      +..+..|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+......+.|.|.+++..|.|.|.|.|.|..|...
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            346788999999999999999999999988665432     234443344467899999999999999999999999988


Q ss_pred             eEEEEEE
Q psy8139         632 ASFLVTV  638 (1101)
Q Consensus       632 ~s~~l~v  638 (1101)
                      .++.|.|
T Consensus        90 ~s~~l~v   96 (96)
T cd05732          90 QSMYLEV   96 (96)
T ss_pred             EEEEEeC
Confidence            7776653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.79  E-value=2.8e-08  Score=82.17  Aligned_cols=67  Identities=24%  Similarity=0.503  Sum_probs=56.2

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .+.|.+.|.|.|.+.|+++|.++.....+  .   ....|.|.++.+.|.|.|+|.|.|..|......++.+
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            58899999999999999999999764332  1   1457999999999999999999999998877666655

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.79  E-value=2.8e-08  Score=82.89  Aligned_cols=68  Identities=25%  Similarity=0.431  Sum_probs=57.4

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.|.+.|.|.|.+.|+++|.++..+..+..    ...+|.|.++.+.|+|.|+|.|.|..|....+..+.+
T Consensus         2 ~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           2 RLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            5899999999999999999999876644322    2568999999999999999999999998777666655

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.78  E-value=3.1e-08  Score=87.24  Aligned_cols=76  Identities=26%  Similarity=0.400  Sum_probs=57.9

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECC----EEeecCC--cEEEEe-------cCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDG----FEIFSSR--RQRIVT-------DNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g----~~~~~~~--~~~~~~-------~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |+.++|.|.+.|.|.|.|+|++++    ..+....  ......       .+....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999953    3222111  111111       122347999999999999999999999999


Q ss_pred             eEEEEEEee
Q psy8139         534 SITKARLRL  542 (1101)
Q Consensus       534 ~~~s~~l~V  542 (1101)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.77  E-value=4.3e-08  Score=81.09  Aligned_cols=68  Identities=25%  Similarity=0.442  Sum_probs=55.1

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      |+.+.|.|.+.|.|.|.|.|.+++.++.....+..    ....|.|.++.  +.|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            56789999999999999999999988865544322    24578888875  7899999999999987776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.76  E-value=5.4e-08  Score=82.05  Aligned_cols=70  Identities=23%  Similarity=0.403  Sum_probs=56.6

Q ss_pred             EEEEEeecCCCeeEEEECCeecCCCCceEE-----EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEI-----THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       568 l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~-----~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      +.|.+.|.|.|+++|+++|.++..+.....     ......++|.|.++...|.|.|+|.|.|..|....+..+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            679999999999999999999976554321     1122356899999999999999999999999877766554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.76  E-value=4.6e-08  Score=86.28  Aligned_cols=77  Identities=25%  Similarity=0.468  Sum_probs=62.9

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      |+.+.|.|.+.|.|.|.+.|+++|..+        ....++.+..   ...|.|.++...|+|.|.|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            578899999999999999999987643        1223444332   35799999999999999999999999999999


Q ss_pred             EEEEecCC
Q psy8139         635 LVTVTDRP  642 (1101)
Q Consensus       635 ~l~v~~~P  642 (1101)
                      .|.|.+..
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99998654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.76  E-value=3.6e-08  Score=82.42  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=57.1

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.|.+.|.|.|.+.|++++..+..+. ...  .....+|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus         2 ~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           2 VLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             EEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            589999999999999999988775432 221  223678999999999999999999999999888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.75  E-value=3.7e-08  Score=82.64  Aligned_cols=70  Identities=33%  Similarity=0.551  Sum_probs=56.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|.|.+.|.|.|.+.|++++..+... ....  ......|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999999999999999998876433 2222  222348999999999999999999999998888777766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.74  E-value=8.3e-08  Score=84.86  Aligned_cols=82  Identities=28%  Similarity=0.477  Sum_probs=61.6

Q ss_pred             CeeeecCceeEEcc---CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139         453 PSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT  528 (1101)
Q Consensus       453 P~~~~~p~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~  528 (1101)
                      |.|...|.++.+..   |.++.|.|.+.|.|.|.++|++++..+...........++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence            56666777766544   4679999999999999999999998874322222222222  78998887 489999999999


Q ss_pred             eCCCceEE
Q psy8139         529 NRAGHSIT  536 (1101)
Q Consensus       529 n~~g~~~~  536 (1101)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.73  E-value=6.8e-08  Score=82.18  Aligned_cols=71  Identities=27%  Similarity=0.629  Sum_probs=56.0

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCC-ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee--EEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGG-RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA--SFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~--s~~l~v  638 (1101)
                      ++|.|.+.|.|.|.+.|+++|.++..+. .+.+.  .....|.|.++.+.|.|.|.|.|.|..|....  ...|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            3689999999999999999999886543 33332  23468999999999999999999999997643  444444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.73  E-value=3.5e-08  Score=87.21  Aligned_cols=81  Identities=23%  Similarity=0.286  Sum_probs=63.9

Q ss_pred             ceeEEccCCeEEEEEEEec-----cCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         460 HDTTALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      .+..+.+|+++.|.|.+.+     .|.+.|.|++++..+...  ...++...+  ..|.|.++..+|+|.|+|.+.|..|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCc
Confidence            4566789999999999998     688999999998654321  122222223  3899999999999999999999999


Q ss_pred             ceEEEEEEee
Q psy8139         533 HSITKARLRL  542 (1101)
Q Consensus       533 ~~~~s~~l~V  542 (1101)
                      ....++.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            9888877765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.72  E-value=7.5e-08  Score=82.39  Aligned_cols=76  Identities=24%  Similarity=0.372  Sum_probs=63.1

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.+. .+.+.|+++|.++..+.++.+.    ..+|.|.++.+.|+|.|+|.|.|..|.......+
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            3467789999999999986 5789999999999876666543    3479999999999999999999999887666555


Q ss_pred             E
Q psy8139         637 T  637 (1101)
Q Consensus       637 ~  637 (1101)
                      .
T Consensus        78 ~   78 (79)
T cd04973          78 N   78 (79)
T ss_pred             e
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.71  E-value=9.2e-08  Score=81.36  Aligned_cols=73  Identities=29%  Similarity=0.404  Sum_probs=61.4

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      .|.|.+.|.|.|.+.|++++..+..+....+...+....|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            5899999999999999999998875543333334445679999999999999999999999999988888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.71  E-value=4.4e-08  Score=83.38  Aligned_cols=67  Identities=28%  Similarity=0.527  Sum_probs=51.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCC----CCCEEEEEEEEeCCCceEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~----~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      ++|.|.+.|.|.|.++|++++..+.......+......+.|.|.++..    .|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            478999999999999999999987543222222222334889998864    6899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.70  E-value=7.6e-08  Score=81.75  Aligned_cols=69  Identities=29%  Similarity=0.524  Sum_probs=56.1

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEeecCCcEE---EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQR---IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~---~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      +.|.|.+.| .|.|.+.|+++|..+.......   +........|.|.++...|.|.|+|.|.|..|....++
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            368999999 9999999999999886544322   33334456899999999999999999999999876654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.69  E-value=6.4e-08  Score=82.15  Aligned_cols=66  Identities=24%  Similarity=0.469  Sum_probs=50.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCC----CCEEEEEEEEeCCCceEEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALM----DEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~----d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +.|.|.+.|.|.|.++|+++|..+...  ..+.+...+  ++|.|..+...    |+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~--g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT--GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCC--ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            468999999999999999999887433  233332223  37888877653    7899999999999986653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.69  E-value=1.1e-07  Score=83.78  Aligned_cols=76  Identities=24%  Similarity=0.370  Sum_probs=58.3

Q ss_pred             CCEEEEEEEEeecCCCeeEEEEC----CeecCCCCc--eEEEee-------cceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHN----GEPLTSGGR--YEITHT-------DRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~~-------~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      |..+.|.|.+.|.|.|.++|.++    |..+..+..  ..+...       .....|.|.+++..|.|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            56789999999999999999984    444432221  111111       12368999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy8139         630 DVASFLVTV  638 (1101)
Q Consensus       630 ~~~s~~l~v  638 (1101)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.69  E-value=7.8e-08  Score=83.08  Aligned_cols=76  Identities=29%  Similarity=0.453  Sum_probs=56.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCE---E-eecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGF---E-IFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~---~-~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      |+++.|.|.+.|.|.|.++|++++.   . +...... ..........|.|.++...|+|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999732   1 1111110 001111234899999999999999999999999988887776


Q ss_pred             e
Q psy8139         542 L  542 (1101)
Q Consensus       542 V  542 (1101)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            5

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.69  E-value=6.9e-08  Score=81.88  Aligned_cols=70  Identities=24%  Similarity=0.364  Sum_probs=55.7

Q ss_pred             EEEEEEeecCCCeeEEEECCeecC---CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLT---SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~---~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.|.+.|.|.|.++|++++....   ...++.+.  ...+.|.|.++.+.|.|.|.|.|.|..|....++.|.|
T Consensus         2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            589999999999999999876432   12233332  23457999999999999999999999999888887776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.67  E-value=7.8e-08  Score=79.98  Aligned_cols=69  Identities=30%  Similarity=0.489  Sum_probs=56.7

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|++++..+... ++.+.   ....|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            368999999999999999998766543 34443   2557999999999999999999999999887777654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.67  E-value=1.4e-07  Score=82.95  Aligned_cols=78  Identities=21%  Similarity=0.404  Sum_probs=63.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA-SFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~  635 (1101)
                      ++.+..|+++.|.|.+.|. .|.+.|++++..+... ++.+.  ....+|.|.++...|.|.|.|.|.|..|...+ ...
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            4577889999999999999 9999999999887643 33332  33568999999999999999999999997544 555


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      |.|
T Consensus        88 L~V   90 (91)
T cd05740          88 LNV   90 (91)
T ss_pred             EEe
Confidence            554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.67  E-value=3.4e-07  Score=88.27  Aligned_cols=116  Identities=16%  Similarity=0.275  Sum_probs=80.2

Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECC
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNG  586 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g  586 (1101)
                      +|.|.+++..|+|.|.|.+.+..|.......|.|..+|.+...+.   ......|..+.|.|.+.|. |. +.|.|+++|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~---~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g   78 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE---KLVSMIEEPQTLICHIAGYYPLDVQVEWTREP   78 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC---CceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence            689999999999999999999888888889999999988765543   1233368889999999996 43 589999987


Q ss_pred             eecCC------CCceE-EE--eecc---eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         587 EPLTS------GGRYE-IT--HTDR---YLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       587 ~~l~~------~~~~~-~~--~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      .....      +.... ..  .++.   .+.|.+..-...+...|+|.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            54211      11000 10  1111   2345555444345678999997654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.67  E-value=1.2e-07  Score=84.06  Aligned_cols=69  Identities=32%  Similarity=0.492  Sum_probs=55.2

Q ss_pred             eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139         562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .|..+.|.|.+.|.|.|.++|+++|..+...........  .++|.|.++. +.|.|.|+|.|.|..|...+
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            378999999999999999999999998865433333222  3578898874 68999999999999997643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.66  E-value=1.2e-07  Score=79.92  Aligned_cols=69  Identities=26%  Similarity=0.471  Sum_probs=55.8

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCC--CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTV  638 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v  638 (1101)
                      +|.|.+.|.|.|.+.|++++.++..  ..++...   ..+.|.|.+++..|.|.|+|.|.|..|.. +..+.|.|
T Consensus         2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            6899999999999999999988863  3344432   24579999999999999999999999974 45666655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.65  E-value=1.1e-07  Score=80.71  Aligned_cols=67  Identities=24%  Similarity=0.324  Sum_probs=55.0

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|+++|..+..          ....|.|.++ .+|+|.|+|.|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            345566777889999999999999998764 6999999987732          1237999999 99999999999874

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.65  E-value=1.4e-07  Score=78.08  Aligned_cols=65  Identities=22%  Similarity=0.336  Sum_probs=51.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +.|.|.+.|.|.|.+.|+++|.++...... ....+  .+|.|.++..+|+|.|+|.|.|........
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            368999999999999999999987654222 22233  379999999999999999999986554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.64  E-value=2.6e-07  Score=79.49  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=56.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .|.+..+..|+++.|.|.+.+ |.+.++|+++|.++...........+   .|.|.+++..|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            366788999999999999865 67899999999998765322233333   69999999999999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.64  E-value=1.6e-07  Score=81.33  Aligned_cols=77  Identities=29%  Similarity=0.492  Sum_probs=61.8

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+.......  ......+|.|.++.+.|.|.|+|.|.|..|....+..|.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45569999999999999999999999998775433222  222357899999999999999999999999876666554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.63  E-value=1.7e-07  Score=79.28  Aligned_cols=73  Identities=22%  Similarity=0.410  Sum_probs=58.4

Q ss_pred             CCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |+.+.|.|.+.|.|.|.+.|.+ ++..+....++....   ..+|.|.++...|.|.|+|.|.|..|..+....|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            5778999999999999999997 666665544443322   457999999999999999999999998777766653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.63  E-value=2.8e-07  Score=83.39  Aligned_cols=82  Identities=30%  Similarity=0.508  Sum_probs=58.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC----C-ceEEEeecceEEEEEc--cCCCCCCeEEEEEEEeCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG----G-RYEITHTDRYLNLRIS--DARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~----~-~~~~~~~~~~~sl~i~--~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+...    . .......+....+.+.  .+...|.|.|+|.|.|..|.
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~   89 (100)
T cd07693          10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE   89 (100)
T ss_pred             eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence            457888999999999999999999999999988651    1 1222222222222332  23688999999999999998


Q ss_pred             -ceeEEEEEE
Q psy8139         630 -DVASFLVTV  638 (1101)
Q Consensus       630 -~~~s~~l~v  638 (1101)
                       .+..+.|.|
T Consensus        90 ~~s~~~~l~v   99 (100)
T cd07693          90 AVSRNASLEV   99 (100)
T ss_pred             eecceEEEEe
Confidence             455666554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.63  E-value=1.6e-07  Score=79.64  Aligned_cols=66  Identities=24%  Similarity=0.438  Sum_probs=50.0

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEee--cCCcEEEEecCCeeEEEEeecCC----CCCEEEEEEEEeCCCceEEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~l~I~~l~~----~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +.|.|.+.|.|.|.++|+++|..+.  ...++.+...+  +.|.|.++..    .|+|.|+|.|.|..|...+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            3689999999999999999998764  23344433233  4888887642    36999999999999976654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.62  E-value=4.8e-07  Score=81.21  Aligned_cols=80  Identities=25%  Similarity=0.450  Sum_probs=63.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCC--CceEEEee----cceEEEEEccCCCCC-CeEEEEEEEeCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSG--GRYEITHT----DRYLNLRISDARRAD-RGEYQAHGVNSLG  628 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~sl~i~~l~~~~-~y~y~c~A~N~~G  628 (1101)
                      ...+..|..+.|.|.+.|.|.| .+.|.+++..+...  .++.+...    +..++|.|.++...+ .|.|.|.|.|..|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            3467889999999999999998 69999999888643  45555432    223689999999955 8999999999999


Q ss_pred             CceeEEEE
Q psy8139         629 EDVASFLV  636 (1101)
Q Consensus       629 ~~~~s~~l  636 (1101)
                      .....+.|
T Consensus        90 ~~~~~~~L   97 (98)
T cd05758          90 SGTAIISL   97 (98)
T ss_pred             cccEEEEe
Confidence            87776554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.62  E-value=1.9e-07  Score=82.22  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECC----eecCCCC--ceEEEe-------ecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNG----EPLTSGG--RYEITH-------TDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g----~~l~~~~--~~~~~~-------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      |+.+.|.|.+.|.|.|.|+|.+++    ..+....  ......       .+....|.|.++.+.|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            567899999999999999999853    3322111  111111       122357999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy8139         630 DVASFLVTV  638 (1101)
Q Consensus       630 ~~~s~~l~v  638 (1101)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.61  E-value=1.6e-07  Score=78.78  Aligned_cols=70  Identities=29%  Similarity=0.511  Sum_probs=56.8

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +.|.|.+.|.|.|.+.|++++..+..+. ..  .......|.|.++...|.|.|+|.|.|..|....+..+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            3589999999999999999988775432 21  2223568999999999999999999999998887777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.60  E-value=3.6e-07  Score=81.04  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=61.8

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCE--------EeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF--------EIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~--------~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +.++.+.+|++++|.|.+.+.|.+.+.|++.+.        ......++.+... ....+|.|.++..+|+|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            457789999999999999999999999986322        1223345554332 3456899999999999999999998


Q ss_pred             CCCceEEEEEEee
Q psy8139         530 RAGHSITKARLRL  542 (1101)
Q Consensus       530 ~~g~~~~s~~l~V  542 (1101)
                      ..+ ....+.|.|
T Consensus        84 ~~~-~~~~~~l~v   95 (95)
T cd07701          84 MPV-KTSKAYLTV   95 (95)
T ss_pred             ecC-ccEEEEEEC
Confidence            533 355566654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.59  E-value=1.8e-07  Score=81.33  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             CCeEEEEEEEecc--CCCeEEEEECCEEeecCC----cEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         467 DEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSR----RQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       467 g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~----~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      |+++.|.|.+.+.  |.+.+.|.+++..+....    ... .......+.|+|.+++..|+|.|+|.|.|..|....++.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999999  888999998776443211    000 111123458999999999999999999999999888887


Q ss_pred             Eee
Q psy8139         540 LRL  542 (1101)
Q Consensus       540 l~V  542 (1101)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.59  E-value=2.1e-07  Score=78.96  Aligned_cols=68  Identities=28%  Similarity=0.475  Sum_probs=55.7

Q ss_pred             EEEEEEee-cCCCeeEEEECCeecCCCCceE---EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         567 KLKVSMAG-MPPPTARWLHNGEPLTSGGRYE---ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       567 ~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      .|.|.+.| .|.|.+.|+++|..+.......   +........|.|.++.+.|.|.|+|.|.|..|....++
T Consensus         2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            58999999 9999999999999887544322   33334467899999999999999999999999876654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.58  E-value=3.6e-07  Score=79.95  Aligned_cols=73  Identities=34%  Similarity=0.582  Sum_probs=60.4

Q ss_pred             CeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCC-CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         557 GLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTS-GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      ...+..|+++.|.|.+ .|.|.|.+.|+++|..+.. ..++.+..   .++|.|.++...|.|.|+|.|.|..|....
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            4577889999999998 7899999999999998875 33444332   458999999999999999999999997543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.58  E-value=1.6e-07  Score=79.96  Aligned_cols=67  Identities=30%  Similarity=0.468  Sum_probs=51.6

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCC----CCCeEEEEEEEeCCCCcee
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR----ADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~----~~~y~y~c~A~N~~G~~~~  632 (1101)
                      +.|.|.+.|.|.|.++|+++|.++.......+......+.|.|.++..    .|+|.|+|.|.|..|...+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            368999999999999999999988643322233333467888888754    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>KOG0613|consensus

Probab=98.58  E-value=1.1e-06  Score=106.85  Aligned_cols=310  Identities=15%  Similarity=0.146  Sum_probs=183.1

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      ..+.+.+..-...+.++|.....+..+ -...........++.+|++-..    ..+....+...|..+..+++..+..|
T Consensus       100 l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~s----v~~~~~~v~~~~~~~~~d~~~k~~~~  174 (1205)
T KOG0613|consen  100 LGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRES----VLVHRARVLPAWRPPREDGGRKREEY  174 (1205)
T ss_pred             cccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccc----eeecCceecccccCCccCccceeecc
Confidence            344445555555666666655444444 2222222233333333333222    25567889999999999999999999


Q ss_pred             EEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeE
Q psy8139         384 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT  463 (1101)
Q Consensus       384 ~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~  463 (1101)
                      .++.+..+...|..............+..  +...+.+.|.+.+..+...+.       .  .   ...+.+...+....
T Consensus       175 iie~~~~g~s~~~~~l~~~~~~s~~~~a~--~e~~v~~v~s~gqp~~~~~~~-------~--~---g~~i~~~~~~~~s~  240 (1205)
T KOG0613|consen  175 IIERRQAGRSPWLKRLTQPTDDSTDTDAH--YESRVRAVVSAGQPEPLERWE-------I--L---GELIAPGSAPSMSV  240 (1205)
T ss_pred             eEEEEeccCCCcccccccccCCcceeccc--cceeEEEEEecCCCccchhhh-------h--c---ccccCCCCcccccc
Confidence            99999988888876654333333332222  444444555444333322211       0  0   12222334455566


Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +..++...+.|.+.+.+.+.+.|+.+.......       ..+..+..|.+-.+...+.|+|...+..|.........+.
T Consensus       241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~  313 (1205)
T KOG0613|consen  241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP  313 (1205)
T ss_pred             ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence            778889999999999988888777654332211       1222366677777777778888877766655443222211


Q ss_pred             c----------------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCC--ceEEEeecceE
Q psy8139         544 A----------------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGG--RYEITHTDRYL  604 (1101)
Q Consensus       544 ~----------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~~~  604 (1101)
                      .                ++...........+....+..+.+.|...+.+.+. +.|++++.....+.  ...........
T Consensus       314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~  393 (1205)
T KOG0613|consen  314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH  393 (1205)
T ss_pred             ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCc
Confidence            1                12111111122223444566788999999888776 99998776654433  23333344466


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      .+.+.++.++..|.+.|.|.|..|........++.
T Consensus       394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs  428 (1205)
T KOG0613|consen  394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS  428 (1205)
T ss_pred             chhhhhcCcccccccccceeccCCcccccchhhcc
Confidence            78889999999999999999999976554444443

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.58  E-value=3.6e-07  Score=81.12  Aligned_cols=66  Identities=32%  Similarity=0.508  Sum_probs=53.4

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      |+.+.|.|.+.|.|.|.++|+++|..+....  .+.+.    .++|.|.++. ..|.|.|+|.|.|..|...+
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            4689999999999999999999999886432  33332    4578888765 58999999999999997644

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.58  E-value=7.6e-07  Score=78.65  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=60.1

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEe--------ecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--------FSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~--------~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+..+..|+++.|.|.+.+.|.+.+.|++++..+        ....++.+... ....+|.|.++..+|+|.|+|.+.+.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            4678899999999999999999999999876532        12234443332 23569999999999999999999883


Q ss_pred             CCceEEEEEEe
Q psy8139         531 AGHSITKARLR  541 (1101)
Q Consensus       531 ~g~~~~s~~l~  541 (1101)
                       ......+.|.
T Consensus        85 -~~~~~~~~~~   94 (95)
T cd05882          85 -PVRTAKATVT   94 (95)
T ss_pred             -ccccEEEEEE
Confidence             3334444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.58  E-value=2.4e-07  Score=79.41  Aligned_cols=69  Identities=22%  Similarity=0.417  Sum_probs=51.2

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEE
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARL  540 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l  540 (1101)
                      ++|.|.+.|.|.|.++|++++....        ...++.+...   .+|.|.++...|+|.|.|.|.|..|...+ ++.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4799999999999999999643211        2233333222   38999999999999999999999997643 4444


Q ss_pred             e
Q psy8139         541 R  541 (1101)
Q Consensus       541 ~  541 (1101)
                      .
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            4

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.57  E-value=7.9e-07  Score=78.37  Aligned_cols=88  Identities=23%  Similarity=0.311  Sum_probs=68.3

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeec--CCcEEEEec----CCeeEEEEeecCCCC-CEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFS--SRRQRIVTD----NDISTLIIHQAALMD-EGEI  523 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~--~~~~~~~~~----~~~~~l~I~~l~~~d-~g~Y  523 (1101)
                      ||.+ .......+..|+++.|.|.+.+.|.| .|.|...+..+..  ..++.+...    +..+.|+|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4544 56677788999999999999888887 5788877766544  356666543    467899999998766 7999


Q ss_pred             EEEEEeCCCceEEEEEE
Q psy8139         524 KCTATNRAGHSITKARL  540 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l  540 (1101)
                      .|.|.|..|.......|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999988766554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.57  E-value=2.7e-07  Score=78.28  Aligned_cols=67  Identities=25%  Similarity=0.381  Sum_probs=49.9

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCC----CCeEEEEEEEeCCCCcee
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRA----DRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~----~~y~y~c~A~N~~G~~~~  632 (1101)
                      +.|.|.+.|.|.|+++|+++|.++.......+......++|.|..+...    |.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            3689999999999999999999874332222222233567888777643    689999999999997544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG0520|consensus

Probab=98.55  E-value=2.5e-07  Score=109.73  Aligned_cols=148  Identities=22%  Similarity=0.287  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------------H--------------HHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8139          12 RAKTILIQTLWRSKLAMRRDEREFCM-------------I--------------RSKTIVIQKYFRGYLLMRKERQEYLA   64 (1101)
Q Consensus        12 ~~aa~~iQ~~~Rg~~~r~~~~~~~~~-------------~--------------~~aa~~IQ~~~Rg~~~r~~~r~~~~~   64 (1101)
                      ..||.+||+.+|..-.+++..++...             +              -.||..||..||||+    .|+.|+.
T Consensus       756 a~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk----~r~~~l~  831 (975)
T KOG0520|consen  756 AQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYK----QRKEFLS  831 (975)
T ss_pred             HHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHH----hhhhhcc
Confidence            45777888888877555433222110             0              136677888888888    8888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          65 MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRW  144 (1101)
Q Consensus        65 ~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~  144 (1101)
                      .+.-+++||+.+||+..|+.+++......        ..++.-.++..+|+.+||+    +.+....+...+++.||..+
T Consensus       832 tr~p~v~iqa~~rg~q~r~dy~ki~wSv~--------~lek~~lrwR~k~~g~Rgf----k~~~~~e~~~~a~t~~e~~y  899 (975)
T KOG0520|consen  832 TRQPIVKIQAAVRGYQVRKDYRKITWSVG--------VLEKLILRWRRKGKGFRGF----KGRALFEEQETAATVIEDCY  899 (975)
T ss_pred             cCCccccchhhhhchhHhhhhheechhhh--------HHHHHHHHHHHhhhhhccc----ccccchhccccccchHHHHH
Confidence            88888888888888888766654433211        1223334455556666633    44444444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         145 RANLTMRKQRAHFLLMKQKASVIQQWYRNTKLM  177 (1101)
Q Consensus       145 R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~r  177 (1101)
                      |-|..-+  +..+.++.+|++.||+.+|.+.++
T Consensus       900 d~yKq~~--~~~~~r~~~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  900 DFYKQLR--KQTEERLTRAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHH
Confidence            5544221  123344555555555555555443

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.55  E-value=7.2e-07  Score=78.82  Aligned_cols=79  Identities=23%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeCCCC-ceeEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNSLGE-DVASF  634 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~~s~  634 (1101)
                      ..+..|+.+.|.|.+.|.| +.+.|++ ++..+....++.+.. .....+|+|.++.+.|.|.|+|.|.|..|. ...++
T Consensus        10 ~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv   88 (92)
T cd04977          10 GEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV   88 (92)
T ss_pred             EEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence            4678899999999999997 4999997 566555434443332 334578999999999999999999999664 45555


Q ss_pred             EEE
Q psy8139         635 LVT  637 (1101)
Q Consensus       635 ~l~  637 (1101)
                      .|.
T Consensus        89 ~l~   91 (92)
T cd04977          89 NLK   91 (92)
T ss_pred             EEE
Confidence            543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.55  E-value=1.1e-06  Score=76.72  Aligned_cols=81  Identities=21%  Similarity=0.357  Sum_probs=63.9

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+......... .......|.|.++..+|.|.|.|.+.|..|....+..|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            34667999999999999999999999999877644333222 12334579999999999999999999999987777666


Q ss_pred             ee
Q psy8139         541 RL  542 (1101)
Q Consensus       541 ~V  542 (1101)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>KOG2128|consensus

Probab=98.54  E-value=2.5e-05  Score=95.50  Aligned_cols=133  Identities=17%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         139 SVQQRWRANLTMRKQRAHFLLMKQ-KASVIQQWYRNTKLMRLEASYL---HELKAATITIQRRYRANVAMRTQRERYVAL  214 (1101)
Q Consensus       139 ~iQ~~~R~~~~r~~~r~~~~~~~~-aa~~IQ~~~R~~~~rr~~~~~~---~~~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~  214 (1101)
                      ..|+..||...+...-..+-..-. -..++|+..||+..|..++..+   .........||++|||++.---........
T Consensus       512 s~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~  591 (1401)
T KOG2128|consen  512 SLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSA  591 (1401)
T ss_pred             hHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHh
Confidence            355555555544333222222111 1233466677766665443332   223346666777777666311223334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         215 RTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRK  294 (1101)
Q Consensus       215 ~~a~i~iQ~~~Rg~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQs~~r~~~~r~  294 (1101)
                      ...++.+|++.||+++|+.+.+..+                                .++....++++||+++|.+..|+
T Consensus       592 ~~evv~~qs~~R~~lsrk~~~~~~q--------------------------------~~~~~~~~~i~iqs~~r~f~~r~  639 (1401)
T KOG2128|consen  592 KKEVVKFQSLTRGALSRKKYSRKLQ--------------------------------YFKDNMTKIIKIQSKIRKFPNRK  639 (1401)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHH--------------------------------HHHHhhhhHHHHHHHHHhcccch
Confidence            5566777777777776666554322                                24455678999999999999999


Q ss_pred             hHHHHHHHh
Q psy8139         295 KFADIIEQK  303 (1101)
Q Consensus       295 ~~~~~~~~~  303 (1101)
                      .|.++....
T Consensus       640 ~y~~L~~s~  648 (1401)
T KOG2128|consen  640 DYKLLFTSE  648 (1401)
T ss_pred             HHHHHhcCC
Confidence            999887543

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.54  E-value=4.3e-07  Score=77.18  Aligned_cols=70  Identities=27%  Similarity=0.511  Sum_probs=54.2

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEeecC----CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         470 VEFTVQVEG-IPTPKVSWYKDGFEIFSS----RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      +.|.|.+.+ .|.+.+.|+++|..+...    .++.+......+.|.|.++...|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999874 688899999999887532    1233333345568999999999999999999999998776653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.54  E-value=3e-07  Score=79.38  Aligned_cols=76  Identities=25%  Similarity=0.334  Sum_probs=55.7

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCe---e--cCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGE---P--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~---~--l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      |+.+.|.|.+.|.|.|.+.|++++.   .  +................|.|.++.+.|.|.|.|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            5678999999999999999998632   1  1111100000111246899999999999999999999999988877765


Q ss_pred             E
Q psy8139         638 V  638 (1101)
Q Consensus       638 v  638 (1101)
                      |
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.52  E-value=4e-07  Score=79.34  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             ecCceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         457 RALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      ..|..+.+..|++++|.|.+.+ .|.+.+.|++++..+...    ....  .+.|.|.++.++|+|.|.|.|.|..|...
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~--~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AMDF--NGILTIRNVQLSDAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----cccc--CCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence            3466778899999999999874 788899999988654321    1111  23899999999999999999999999888


Q ss_pred             EEEEE
Q psy8139         536 TKARL  540 (1101)
Q Consensus       536 ~s~~l  540 (1101)
                      .++.|
T Consensus        80 ~~~~l   84 (85)
T cd05754          80 ATATL   84 (85)
T ss_pred             EEEEE
Confidence            87665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.52  E-value=1.9e-06  Score=83.06  Aligned_cols=116  Identities=14%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-CeE
Q psy8139         407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-PKV  484 (1101)
Q Consensus       407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-~~v  484 (1101)
                      +|.|.+++..|+|.|.|.+.+..|...     ..+.+.+.    .+|.+...+.......|..++|.|.+.|. |. +.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~l~v~----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i   72 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-----QIIQLSVS----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQV   72 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCccee-----eEEEEEEe----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEE
Confidence            689999999999999999988665543     33455543    56777666666555578999999999985 54 489


Q ss_pred             EEEECCEEeec-----CC----cEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         485 SWYKDGFEIFS-----SR----RQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       485 ~W~~~g~~~~~-----~~----~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +|+++|.....     ..    ......++.   .+.|.+..-...+...|+|.+.+..
T Consensus        73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            99998754211     11    011111121   1244444333334668999997653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.52  E-value=2.9e-07  Score=81.34  Aligned_cols=80  Identities=20%  Similarity=0.106  Sum_probs=62.1

Q ss_pred             CeEEeeCCEEEEEEEEee-----cCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAG-----MPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ...+.+|+++.|.|.+.+     .|.+.+.|++++..+...  ....+..  ....|.|.++.+.|+|.|.|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            346778999999999999     688999999998764321  1112222  2467999999999999999999999998


Q ss_pred             ceeEEEEEE
Q psy8139         630 DVASFLVTV  638 (1101)
Q Consensus       630 ~~~s~~l~v  638 (1101)
                      ...++.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            877776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.52  E-value=5.6e-07  Score=76.80  Aligned_cols=68  Identities=18%  Similarity=0.321  Sum_probs=54.9

Q ss_pred             CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .+.+..|+++.|.|.+.|.|.| .|.|.++|.++...  .    ....+.|.|.++.  +.|.|.|.|.|..|...+
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            4578889999999999999999 79999999988641  1    1124578888875  679999999999996543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.51  E-value=5.2e-07  Score=79.71  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=53.7

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCC-CCceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      |..+.|.|.+.|.|.|.++|++++..+.. ..++.+.    .+.|.|.++. ..|.|.|.|.|.|..|...+
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            45799999999999999999999988853 3344332    4679999885 68999999999999997643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=98.50  E-value=3e-05  Score=95.50  Aligned_cols=137  Identities=21%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          37 MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTL  116 (1101)
Q Consensus        37 ~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~  116 (1101)
                      .+...++.||++|||++    .|++|++..+.+..||...+|++.|+...                +.....+++.+|..
T Consensus       743 ~~~~~~~~iq~aiR~~~----~rrr~~~~~k~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~  802 (1463)
T COG5022         743 KLDNIATRIQRAIRGRY----LRRRYLQALKRIKKIQVIQHGFRLRRLVD----------------YELKWRLFIKLQPL  802 (1463)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchhhhcc----------------cchHHHhHHHhhHH
Confidence            45688999999999999    89999999999999999999988865433                22455678888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         117 YKAKLLMKRDRAAYTELKQACVSVQ-QRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQ  195 (1101)
Q Consensus       117 ~R~~~~~~~~r~~~~~~~~aa~~iQ-~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ  195 (1101)
                      ++    ....|..+......+..+| ..+|....+...  .......+++.+|+++|.+..++.    +..+.+..+.+|
T Consensus       803 ~~----~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~--e~~~~~~~~~L~~~~~rs~~~~kr----~~~L~k~~i~~~  872 (1463)
T COG5022         803 LS----LLGSRKEYRSYLACIIKLQKTIKREKKLRETE--EVEFSLKAEVLIQKFGRSLKAKKR----FSLLKKETIYLQ  872 (1463)
T ss_pred             hH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHhhhhhHH----HHHhhhHHHHHH
Confidence            88    4456666777777777788 555555433211  234455677777777777765443    344445555577


Q ss_pred             HHHHHHHH
Q psy8139         196 RRYRANVA  203 (1101)
Q Consensus       196 ~~~Rg~~~  203 (1101)
                      ..+|.-.+
T Consensus       873 ~~~r~~~a  880 (1463)
T COG5022         873 SAQRVELA  880 (1463)
T ss_pred             HHHHHHHH
Confidence            77775554

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.49  E-value=7e-07  Score=79.69  Aligned_cols=77  Identities=26%  Similarity=0.356  Sum_probs=58.3

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc--eEEEeecceEEEEEccC-----CCCCCeEEEEEEEeC-CCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHTDRYLNLRISDA-----RRADRGEYQAHGVNS-LGE  629 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~sl~i~~l-----~~~~~y~y~c~A~N~-~G~  629 (1101)
                      ..+..|+++.|.|.+.|.|.|.+.|.++|..+.....  +.+..   .+++.|.++     .+.|.|.|+|.|.|. .|.
T Consensus         9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~---~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP---NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             eEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc---CCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            4667799999999999999999999999998875432  22222   345666665     578999999999999 887


Q ss_pred             c-eeEEEEE
Q psy8139         630 D-VASFLVT  637 (1101)
Q Consensus       630 ~-~~s~~l~  637 (1101)
                      . +..+.|.
T Consensus        86 ~~s~~~~l~   94 (95)
T cd05722          86 IVSRTARLT   94 (95)
T ss_pred             EEEeeeEEe
Confidence            5 3344443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.49  E-value=7.5e-07  Score=77.12  Aligned_cols=76  Identities=21%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCC----cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC--ceEEEEEE
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG--HSITKARL  540 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g--~~~~s~~l  540 (1101)
                      |++++|.|.+.+.|.+.+.|.+++.......    ...+......+.|.|.+++.+|+|.|.|.|.|..+  ....+..|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7889999999999999999998775332111    11111112245899999999999999999999876  44445555


Q ss_pred             ee
Q psy8139         541 RL  542 (1101)
Q Consensus       541 ~V  542 (1101)
                      .|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            55

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.49  E-value=7.1e-07  Score=75.75  Aligned_cols=64  Identities=28%  Similarity=0.430  Sum_probs=48.8

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCC--CCceEEEeecceEEEEEccCC---C-CCCeEEEEEEEeCCCCcee
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNLRISDAR---R-ADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~sl~i~~l~---~-~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .|.|.+.|.|.|.++|+++|.++..  +.++.+  ....++|.|..+.   + .+.|.|+|.|.|..|...+
T Consensus         2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             EEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            5899999999999999999987642  333433  2335678888764   2 3589999999999997544

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.48  E-value=6.6e-07  Score=74.09  Aligned_cols=63  Identities=24%  Similarity=0.379  Sum_probs=50.8

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .|.|.+.|.|.|.+.|+++|.++... ..+..  .  ..+|.|.++...|+|.|+|.|.|..+.....
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            58899999999999999999998754 23322  2  3479999999999999999999986654443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.48  E-value=7.6e-07  Score=77.34  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CCEEEEEEEEeec--CCCeeEEEECCeecCCCCc-----eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         563 GEIIKLKVSMAGM--PPPTARWLHNGEPLTSGGR-----YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       563 g~~~~l~c~~~g~--p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+.....     ...........|.|.++++.|+|.|+|.|.|..|..+.+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6788999999999  8899999987765432211     11111223578999999999999999999999999888887


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG0520|consensus

Probab=98.46  E-value=3.2e-07  Score=108.85  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy8139         105 KLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAH------FLLMKQKASVIQQWYRNTKLMR  178 (1101)
Q Consensus       105 ~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~r~~------~~~~~~aa~~IQ~~~R~~~~rr  178 (1101)
                      ....+|..||..||    .++.|+.|...+..++.||+.+||+..|+.+++.      ..++-.++..+|..+|||+.++
T Consensus       808 ~~~~aa~~iq~~f~----~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~  883 (975)
T KOG0520|consen  808 SDPAAASRIQKKFR----GYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRA  883 (975)
T ss_pred             cchhHHHHhhhhhh----hHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhccccccc
Confidence            34578999999999    5588999999999999999999999988766543      2234447889999999998877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         179 LEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDE  237 (1101)
Q Consensus       179 ~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~~~~~~  237 (1101)
                      .    +.....|++.||..+|-|..  ..+..+.++.+|++.||+.+|.+.+|.++|++
T Consensus       884 ~----~e~~~~a~t~~e~~yd~yKq--~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~  936 (975)
T KOG0520|consen  884 L----FEEQETAATVIEDCYDFYKQ--LRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL  936 (975)
T ss_pred             c----hhccccccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5    44444588889999996654  22467888899999999999999998666654

>KOG0160|consensus

Probab=98.44  E-value=3.3e-06  Score=100.61  Aligned_cols=88  Identities=28%  Similarity=0.460  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          37 MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTL  116 (1101)
Q Consensus        37 ~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~  116 (1101)
                      .+..+++.||+.+|+|+    .|+.|..++++++.||+.+||+++|+   .               .. ...||+.||+.
T Consensus       671 vl~~~~~~iq~~~r~~~----~r~~f~~~r~~~~~~Q~~~rG~~~r~---~---------------~~-~~~aai~~q~~  727 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYL----ARKKFLQLRSAVIIIQAYSRGVLARR---E---------------TE-REAAAIGIQKE  727 (862)
T ss_pred             HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHH---h---------------hH-HHHHHHHhHHH
Confidence            45578888999999999    89999999999999999999999865   1               11 66789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         117 YKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMR  151 (1101)
Q Consensus       117 ~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~  151 (1101)
                      +|    ++..|+.|.....+++.+|+.+|++++|+
T Consensus       728 ~r----~~~~r~~y~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  728 CR----SYLNRRRYRALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99    66788889999999999999999999876

>KOG0160|consensus

Probab=98.43  E-value=1.5e-06  Score=103.42  Aligned_cols=95  Identities=34%  Similarity=0.406  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         125 RDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAM  204 (1101)
Q Consensus       125 ~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~  204 (1101)
                      ...++-.-+..+++.||+.+|+|+.    |+.|..++++++.||+.+||+++|+   ...  ...|++.||+.||+++. 
T Consensus       664 le~~R~~vl~~~~~~iq~~~r~~~~----r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~--~~~aai~~q~~~r~~~~-  733 (862)
T KOG0160|consen  664 LEARRSDVLSAAKVLIQRQIRGYLA----RKKFLQLRSAVIIIQAYSRGVLARR---ETE--REAAAIGIQKECRSYLN-  733 (862)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHH---hhH--HHHHHHHhHHHHHHHHH-
Confidence            3333344456677889999999995    4557788899999999999999987   112  67788889999998887 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         205 RTQRERYVALRTATITIQTRFRAYLIAK  232 (1101)
Q Consensus       205 ~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~  232 (1101)
                         |+.|..++.+++.+|+.+|++++|.
T Consensus       734 ---r~~y~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  734 ---RRRYRALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               8899999999999999999999987

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.42  E-value=1.1e-06  Score=75.41  Aligned_cols=69  Identities=30%  Similarity=0.479  Sum_probs=51.1

Q ss_pred             EEEEEEEeecCCCeeEEEECCeecC--------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEE
Q psy8139         566 IKLKVSMAGMPPPTARWLHNGEPLT--------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLV  636 (1101)
Q Consensus       566 ~~l~c~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l  636 (1101)
                      ++|.|.+.|.|.|.+.|++++....        ...++.+.   ..++|.|.++...|.|.|.|.|.|..|.. +.+..|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            3689999999999999998643211        12233332   24689999999999999999999999976 344444


Q ss_pred             E
Q psy8139         637 T  637 (1101)
Q Consensus       637 ~  637 (1101)
                      +
T Consensus        78 ~   78 (79)
T cd05734          78 T   78 (79)
T ss_pred             e
Confidence            3

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.42  E-value=1.4e-06  Score=76.64  Aligned_cols=82  Identities=16%  Similarity=0.270  Sum_probs=60.2

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC-ceE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG-HSI  535 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g-~~~  535 (1101)
                      |..+.+..|+++.|.|.+.+ |.+.+.|++++..+....  ........  ..|.|.++..+|+|.|.|.|.+..+ ...
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   79 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTL   79 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence            45677889999999999987 888999999988765432  11222222  2599999999999999999987654 344


Q ss_pred             EEEEEeec
Q psy8139         536 TKARLRLE  543 (1101)
Q Consensus       536 ~s~~l~V~  543 (1101)
                      .+..|.|.
T Consensus        80 ~~~~l~V~   87 (89)
T cd04979          80 ATYSLNVL   87 (89)
T ss_pred             eEEEEEEe
Confidence            45556553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.41  E-value=1.4e-06  Score=74.03  Aligned_cols=69  Identities=26%  Similarity=0.460  Sum_probs=54.0

Q ss_pred             EEEEEEee-cCCCeeEEEECCeecCCC----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         567 KLKVSMAG-MPPPTARWLHNGEPLTSG----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       567 ~l~c~~~g-~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .|.|.+.+ .|.+.+.|+++|..+...    .++.+.......+|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus         2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            58999875 678999999999888532    2233333345678999999999999999999999998766543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.38  E-value=3e-06  Score=73.35  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=56.2

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCC----ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC--CceeEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG----RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG--EDVASFLV  636 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G--~~~~s~~l  636 (1101)
                      |+++.|.|.+.+.|.+.+.|.+++.......    ...+........|.|.++++.|+|.|.|.|.|..+  ....+..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6788999999999999999998765432111    11111222367899999999999999999999876  45556666


Q ss_pred             EEe
Q psy8139         637 TVT  639 (1101)
Q Consensus       637 ~v~  639 (1101)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>KOG0613|consensus

Probab=98.37  E-value=1.6e-06  Score=105.41  Aligned_cols=396  Identities=19%  Similarity=0.115  Sum_probs=217.0

Q ss_pred             EEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEe
Q psy8139         366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY  445 (1101)
Q Consensus       366 ~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~  445 (1101)
                      .++|+.|..+++...++|.+.........|.....  ....-....+..+..-+..+|.+.+..+....+..+...... 
T Consensus         9 ~lr~~r~~~~~~~~~t~~~~~~~s~l~~~r~~~s~--~~~~~v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~-   85 (1205)
T KOG0613|consen    9 CLRPDRPGKLVFEAKTTYTVDKLSILPDVRDSGSF--IPDYGVLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMV-   85 (1205)
T ss_pred             ccCcccCCCcccccCCCCCccccccChhhccCCCc--cccCcceeccCCcceeeeeeeccccccCCCCcccccchhhcc-
Confidence            78899998888888888988776554444443222  222345667778888899999999988766544333333222 


Q ss_pred             ccCCCCCCeeeecCceeE-----EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         446 QRSPAAAPSFIRALHDTT-----ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       446 ~~~~~~~P~~~~~p~~~~-----v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                          +.++.....+.+..     ........+.-...+.+.+.|. ...+..+......-....+....+.+..+..-+.
T Consensus        86 ----pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~  160 (1205)
T KOG0613|consen   86 ----PATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAW  160 (1205)
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccceeecCceecccc
Confidence                22222222111110     0000111111111111111111 1111111111111111111222333333332232


Q ss_pred             EEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee-CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe
Q psy8139         521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM-GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH  599 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~-g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~  599 (1101)
                      +...|-+.+..+.......+....+............+.... +....+-....|.|.+...|..+|..+..+.......
T Consensus       161 ~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~  240 (1205)
T KOG0613|consen  161 RPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAHYESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSV  240 (1205)
T ss_pred             cCCccCccceeecceEEEEeccCCCcccccccccCCcceeccccceeEEEEEecCCCccchhhhhcccccCCCCcccccc
Confidence            323332222222222223333333333322222222223333 2333333444578899999999999998887777776


Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE  679 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~  679 (1101)
                      ......+.|...-+.+.|.|...+.|..|....          .++.........+....++|..+....++.+..|...
T Consensus       241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~  310 (1205)
T KOG0613|consen  241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE  310 (1205)
T ss_pred             ccchhheeeeEEeecCCCchHHHHhcchhhhcc----------cCCCccccccccCCccccceeeecccCCcccceeeeE
Confidence            666677777777778889998888888776433          2333334444566778899999999999999999888


Q ss_pred             EEcC----CCCCC-------CC---ccc---CCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccccc
Q psy8139         680 YFRP----PGPPG-------KP---QLL---PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV  742 (1101)
Q Consensus       680 ~~~~----~~~p~-------~p---~~~---~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~  742 (1101)
                      ++.+    +++.+       +|   ...   .....-+.+.+++.|.-+...-.....+|.+.-....+..|........
T Consensus       311 ~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (1205)
T KOG0613|consen  311 EAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTV  390 (1205)
T ss_pred             EeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccc
Confidence            8544    22221       11   111   1111335667778887654433344566666655555556655555445


Q ss_pred             CccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       743 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      ....+.+.++.++..|..+|.|.|..|...+.+.+.+
T Consensus       391 ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~v  427 (1205)
T KOG0613|consen  391 TSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTV  427 (1205)
T ss_pred             cCcchhhhhcCcccccccccceeccCCcccccchhhc
Confidence            6678899999999999999999999998666554433

>KOG3515|consensus

Probab=98.36  E-value=3.5e-05  Score=90.65  Aligned_cols=350  Identities=12%  Similarity=0.033  Sum_probs=192.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCee-eecCceeEEccCCeEEEEEEEeccC-CC
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEGIP-TP  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~-~~~p~~~~v~~g~~v~L~C~~~g~p-~~  482 (1101)
                      ...+.+..+...+.+.|.|.|.+.......   +....+.+.    .+|.+ ...+......+++.......+.+.| .+
T Consensus       360 ~~~~~~q~~~~~~~g~v~c~a~~~~~~~~s---ss~~~l~~l----~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~  432 (741)
T KOG3515|consen  360 VISHYAQPSSQQDGGQVTCPADNLELAHSS---SSSFLLPVL----PSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAER  432 (741)
T ss_pred             eEEeeecccchhcCceEEcccccccccccc---ccceecccc----CCchhhhhcccceeeccCccccccCcccCCCccc
Confidence            345677788889999999999987743322   222333322    33333 3334444455555544444333444 45


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM  562 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~  562 (1101)
                      .+.|...+..+.....-.+....+.....+.++...|.|.|.|.+.|+.|.......+.+...|.+....   .......
T Consensus       433 ~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~---~~~~~~~  509 (741)
T KOG3515|consen  433 TFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQ---DQVEGAT  509 (741)
T ss_pred             chhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccc---cccccCC
Confidence            7999999888876544333333332345566788899999999999999998887777777766553221   2224445


Q ss_pred             CCEEEEEEEEeecC--CCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ++++.+.|.....+  .-.+.|.+.+.+.+...  ............+.+.+......|.|.|.+.|..-.+.....+.+
T Consensus       510 ~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~  589 (741)
T KOG3515|consen  510 GNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA  589 (741)
T ss_pred             CCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence            66788899887665  34688888776654211  111111222455667777767789999999882212222333333


Q ss_pred             ecCC---CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeC-CCCC
Q psy8139         639 TDRP---LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYD  714 (1101)
Q Consensus       639 ~~~P---~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~p-P~~~  714 (1101)
                      ...+   ..+.++.........++++|.+                                  ....+....|.. |...
T Consensus       590 ~s~~~v~~~tp~~~~~~~g~v~as~~~~a----------------------------------~~~~~~~~~~~k~p~~~  635 (741)
T KOG3515|consen  590 YSALIVTVRTPNMYTAQEGCVNASDDCVA----------------------------------SGVPSTSFTTAKTPLQT  635 (741)
T ss_pred             cccccccccCCceeeeccCccccccccee----------------------------------cccccceeecccCCCcc
Confidence            3222   1112222222222244444421                                  111223345554 3222


Q ss_pred             CCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcc
Q psy8139         715 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF  794 (1101)
Q Consensus       715 ~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~  794 (1101)
                      -.+ ...|..-+       |.. .   ....+..+-+-.++..|.+.|.+.|..|.+.-+   .....   ..-+..|.+
T Consensus       636 ~~~-~~~~~~~~-------~~~-~---~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~---~~~~~---~t~~~~~~n  697 (741)
T KOG3515|consen  636 TEG-PHIREKAT-------QQG-Q---THSSSEWILNHIDGSDYENGCTTQNLLGSDHVS---GAIHS---GTASVGPIN  697 (741)
T ss_pred             cCC-ceEEEeee-------ecc-c---cccccccccCCcchhhhcceeeecccCCCcccc---ceecC---CcCCCCccc
Confidence            111 11111111       111 0   122233455677888999999999999975433   22221   234455555


Q ss_pred             cc--cccccceeccccCCCCCCcc
Q psy8139         795 IR--ALHDTTALEDEKPRNTNNCD  816 (1101)
Q Consensus       795 ~~--~~~~s~~~~~w~p~~~~~~~  816 (1101)
                      +.  .+...++-+-|.|..+..+.
T Consensus       698 ~~~~~~~~~~i~l~~~p~fdgg~~  721 (741)
T KOG3515|consen  698 LTYDNLTYSTISLEWMPGFDGGLQ  721 (741)
T ss_pred             eEeeeeeeeeeceeeeeccccccc
Confidence            55  44455566778775554443

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.36  E-value=7.5e-07  Score=77.73  Aligned_cols=74  Identities=34%  Similarity=0.690  Sum_probs=60.5

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc-eEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  434 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~-w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~  434 (1101)
                      .++.+++.|+|.+|. .++..+.+|.|++....+.. |..... ......+.|.+|.|++.|.|++.|.|..|.+.+
T Consensus        10 ~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~   84 (85)
T PF00041_consen   10 NISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTV-PGNETSYTITGLQPGTTYEFRVRAVNSDGEGPP   84 (85)
T ss_dssp             EECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEEETTEEEEE
T ss_pred             ECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeee-eeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCC
Confidence            678999999999996 66779999999999877665 444332 234458999999999999999999999987653

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.35  E-value=2e-06  Score=75.95  Aligned_cols=65  Identities=35%  Similarity=0.589  Sum_probs=51.9

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCce
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~  631 (1101)
                      |..+.|.|.+.|+|.|.++|++++..+...  ..+...    .+.|.|.++. ..|.|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV----GGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE----CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            467999999999999999999999988432  233222    4578888876 4899999999999999643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>KOG3515|consensus

Probab=98.34  E-value=7.8e-06  Score=95.99  Aligned_cols=260  Identities=12%  Similarity=0.056  Sum_probs=161.5

Q ss_pred             EEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--eEE
Q psy8139         408 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--KVS  485 (1101)
Q Consensus       408 l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--~v~  485 (1101)
                      ....++...|.|.|.|.|.|..|.....     +...+    ...|.+...-.......+.++.+.|.....|..  .+.
T Consensus       460 ~s~~~v~~~d~g~y~~tatns~gg~~~~-----~~~~~----~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~  530 (741)
T KOG3515|consen  460 GSGVNVSRSDGGSYGLTATNSPGGAQAY-----LLLGV----HTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHH  530 (741)
T ss_pred             cccceeeeccCCcceeeeccCCCceeeE-----Eeecc----ccCCcccccccccccCCCCcccceeeccccccchhhhc
Confidence            3455688889999999999998876421     22122    244444433334455667778999988776654  478


Q ss_pred             EEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee-
Q psy8139         486 WYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM-  562 (1101)
Q Consensus       486 W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~-  562 (1101)
                      |.+.+.+.....  ............+.+.......+|.|.|.+.+..-.+.....+.+..++.....+..  .....+ 
T Consensus       531 ~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~--~~~~~~g  608 (741)
T KOG3515|consen  531 EPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPN--MYTAQEG  608 (741)
T ss_pred             ccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCc--eeeeccC
Confidence            988776543210  000111112235666666666789999999883222333344455444433322211  111111 


Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +..++..|.+.+.+.+.+.|.+++.....+.++....    .....+..+-+.-....|...|.+.|..|.+..+..+.-
T Consensus       609 ~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~  688 (741)
T KOG3515|consen  609 CVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHS  688 (741)
T ss_pred             cccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecccCCCccccceecC
Confidence            2267889988899999999999877644433322111    111223344445556677799999999999888877777


Q ss_pred             ecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139         639 TDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY  680 (1101)
Q Consensus       639 ~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~  680 (1101)
                      -..|..|.++.+......++.|.|. |..++|+. ..+.+.|
T Consensus       689 ~t~~~~~~n~~~~~~~~~~i~l~~~-p~fdgg~~-q~f~~~~  728 (741)
T KOG3515|consen  689 GTASVGPINLTYDNLTYSTISLEWM-PGFDGGLQ-QRFFLKY  728 (741)
T ss_pred             CcCCCCccceEeeeeeeeeeceeee-eccccccc-cceeeeh
Confidence            7788999999999999999999999 66666632 3344433

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.33  E-value=7.8e-06  Score=72.12  Aligned_cols=80  Identities=29%  Similarity=0.418  Sum_probs=63.4

Q ss_pred             CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCC--CceEEEee----cceEEEEEccCCCCC-CeEEEEEEEeCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSG--GRYEITHT----DRYLNLRISDARRAD-RGEYQAHGVNSLG  628 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~sl~i~~l~~~~-~y~y~c~A~N~~G  628 (1101)
                      ...+..|+.+.|.|.+.+.|.| .+.|..++..+..+  .++.+...    +..+.|.|.++...| .|.|.|.|.|..|
T Consensus        10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            4577889999999999877765 67998887776543  56666543    467899999998777 7899999999999


Q ss_pred             CceeEEEE
Q psy8139         629 EDVASFLV  636 (1101)
Q Consensus       629 ~~~~s~~l  636 (1101)
                      .......|
T Consensus        90 ~d~~~i~L   97 (98)
T cd05898          90 SGTAIIQL   97 (98)
T ss_pred             cceEEEEe
Confidence            98766554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.32  E-value=2.7e-06  Score=74.63  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=58.5

Q ss_pred             eEEccCCeEEEEEEEec-----cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         462 TTALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      ..+..|.+..|.|...+     +|.|.+.|++++.++....... . .  ...|.|.++..+|+|.|+|.|.|..|....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~-~--~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V-K--GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e-c--CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            45778999999997643     3578999999999887554332 2 2  238999999999999999999999887666


Q ss_pred             EEEE
Q psy8139         537 KARL  540 (1101)
Q Consensus       537 s~~l  540 (1101)
                      ....
T Consensus        81 ~~t~   84 (92)
T cd05757          81 NVTR   84 (92)
T ss_pred             EEEE
Confidence            5433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.31  E-value=5.5e-06  Score=72.20  Aligned_cols=79  Identities=24%  Similarity=0.424  Sum_probs=62.3

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEE-EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI-THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      .+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++.+.|.|.|.|.|.|..|....+..|.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            456799999999999999999999999988764433322 2223345789999999999999999999999876666554

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.30  E-value=2.9e-06  Score=73.15  Aligned_cols=66  Identities=26%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             eEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         462 TTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      ..+.+|++++|.|.+. +.+.+.+.|+++|..+..        ......|.|.++...|+|.|+|.+.+..|...
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            3688999999999985 456678999999976532        11234899999999999999999999988544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00410 IG_like Immunoglobulin like

Probab=98.29  E-value=1.4e-05  Score=69.43  Aligned_cols=83  Identities=33%  Similarity=0.528  Sum_probs=67.5

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|+|.|.|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            345678899999999999988889999998 7777655566666555567999999999999999999998877766665


Q ss_pred             EEee
Q psy8139         539 RLRL  542 (1101)
Q Consensus       539 ~l~V  542 (1101)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.29  E-value=1.4e-05  Score=69.43  Aligned_cols=83  Identities=33%  Similarity=0.528  Sum_probs=67.5

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|+|.|.|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            345678899999999999988889999998 7777655566666555567999999999999999999998877766665


Q ss_pred             EEee
Q psy8139         539 RLRL  542 (1101)
Q Consensus       539 ~l~V  542 (1101)
                      .|.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5554

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.25  E-value=3.9e-06  Score=73.09  Aligned_cols=74  Identities=24%  Similarity=0.258  Sum_probs=59.4

Q ss_pred             CeEEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+.++|.|.+.+ .|.+.+.|++++..+...  .    ....+.|.|.++++.|+|.|.|.|.|..|....++.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~   83 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT   83 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence            346788999999999975 688999999988665432  1    112468999999999999999999999998877765


Q ss_pred             E
Q psy8139         636 V  636 (1101)
Q Consensus       636 l  636 (1101)
                      |
T Consensus        84 l   84 (85)
T cd05754          84 L   84 (85)
T ss_pred             E
Confidence            4

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.25  E-value=8.3e-06  Score=72.35  Aligned_cols=82  Identities=17%  Similarity=0.236  Sum_probs=60.1

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECC--------eecCCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNG--------EPLTSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g--------~~l~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .++.+.+|+++.|.|.+.+.|.+.+.|++.+        ......+++.... .....+|.|.++++.|+|.|.|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            3568889999999999999999999998532        2222334555432 234578999999999999999999985


Q ss_pred             CCCceeEEEEEE
Q psy8139         627 LGEDVASFLVTV  638 (1101)
Q Consensus       627 ~G~~~~s~~l~v  638 (1101)
                      .+. ...+.|.|
T Consensus        85 ~~~-~~~~~l~v   95 (95)
T cd07701          85 PVK-TSKAYLTV   95 (95)
T ss_pred             cCc-cEEEEEEC
Confidence            333 55555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.25  E-value=6.7e-06  Score=70.82  Aligned_cols=66  Identities=29%  Similarity=0.389  Sum_probs=54.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      ...+..|+++.|.|.+.+ +.+.+.|.++|.++..+ .++.+.    ...|.|.+++..|+|.|+|.|.+..
T Consensus         5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            457888999999999754 67899999999999765 344332    4569999999999999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.24  E-value=1e-05  Score=72.19  Aligned_cols=83  Identities=18%  Similarity=0.348  Sum_probs=59.2

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEE-e-------ecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE-I-------FSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~-~-------~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +.++.+.+|++++|.|.+.+.+.+.+.|++.+.. +       ....++.+.. .+....|+|.+++.+|+|.|.|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            3567789999999999999888899999863221 1       1223444422 23445899999999999999999997


Q ss_pred             CCCceEEEEEEee
Q psy8139         530 RAGHSITKARLRL  542 (1101)
Q Consensus       530 ~~g~~~~s~~l~V  542 (1101)
                      ... ...++.|.|
T Consensus        84 ~~~-~~~~~~~~v   95 (95)
T cd05717          84 MPV-QTAKATVTV   95 (95)
T ss_pred             CCC-ceEEEEEEC
Confidence            653 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.22  E-value=2.6e-06  Score=74.40  Aligned_cols=72  Identities=17%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             eeEEccCCeEEEEEEE-eccCCCeEEEEECCEEee--cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         461 DTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++.++.  ...+..+..  ..+.|.|.++...|+|.|+|.|.|..+..
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3568889999999954 688999999999987542  223333332  23389999999999999999999976543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.21  E-value=3.4e-06  Score=71.51  Aligned_cols=58  Identities=29%  Similarity=0.460  Sum_probs=48.6

Q ss_pred             eEEeeCCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      ..+.+|++++|.|.+.+.|. ..+.|+++|..+..          ....|.|.++ ..|+|.|+|.|.|.
T Consensus        10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            37888999999999999875 57999999987632          2457889999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.21  E-value=1.3e-05  Score=68.71  Aligned_cols=70  Identities=34%  Similarity=0.604  Sum_probs=54.6

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc-eEEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH-SITKARL  540 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~-~~~s~~l  540 (1101)
                      ..+..|++++|.|.+.+.|.+.+.|++++..+....        +  .+.+.++...|.|.|+|.+.+..+. .+.++.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            568899999999999999999999999987775321        1  2777889999999999999996653 2334444


Q ss_pred             e
Q psy8139         541 R  541 (1101)
Q Consensus       541 ~  541 (1101)
                      .
T Consensus        79 ~   79 (80)
T PF13895_consen   79 T   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            4

...

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.21  E-value=1.6e-05  Score=70.23  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=58.5

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      +..+..|+++.|.|.+.+.|.+.+.|.+++..+        ....++.+... ....+|.|.++.+.|.|.|+|.+.. .
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~   84 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M   84 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence            457889999999999999999999999876532        12234443322 2357899999999999999999987 2


Q ss_pred             CCceeEEEEE
Q psy8139         628 GEDVASFLVT  637 (1101)
Q Consensus       628 G~~~~s~~l~  637 (1101)
                      -..+..+.++
T Consensus        85 ~~~~~~~~~~   94 (95)
T cd05882          85 PVRTAKATVT   94 (95)
T ss_pred             ccccEEEEEE
Confidence            2334444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.19  E-value=8.7e-06  Score=65.91  Aligned_cols=63  Identities=40%  Similarity=0.656  Sum_probs=50.7

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      +|++++|.|.+.+.|.+.+.|++++..+..  .....  .....|.|.++...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999998899999999999887762  22222  2334899999999999999999998764

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=98.19  E-value=0.0001  Score=91.04  Aligned_cols=145  Identities=21%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139           3 QCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCM   82 (1101)
Q Consensus         3 ~~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r   82 (1101)
                      ++-++-..+..+++.||++|||++.|+++...    ......||...+|+..++  +..+.-.-.+++.||..+|....|
T Consensus       736 LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~----~k~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~r  809 (1463)
T COG5022         736 LEDMRDAKLDNIATRIQRAIRGRYLRRRYLQA----LKRIKKIQVIQHGFRLRR--LVDYELKWRLFIKLQPLLSLLGSR  809 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccchhh--hcccchHHHhHHHhhHHhHHHhhH
Confidence            35677788899999999999999999977643    345566777777877332  223333447899999999998774


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          83 RQARQQYLALKHATLKQREEFLKLKHATIAIQ-TLYKAKLLMKRDRA--AYTELKQACVSVQQRWRANLTMRKQRAHFLL  159 (1101)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ-~~~R~~~~~~~~r~--~~~~~~~aa~~iQ~~~R~~~~r~~~r~~~~~  159 (1101)
                      ..                  ++.....++.+| ..++    .+..+.  .-.....+++.+|++||.+.+    ++++..
T Consensus       810 ~~------------------~~~~~~~i~~lq~~i~~----~~~~~~~~e~~~~~~~~~L~~~~~rs~~~----~kr~~~  863 (1463)
T COG5022         810 KE------------------YRSYLACIIKLQKTIKR----EKKLRETEEVEFSLKAEVLIQKFGRSLKA----KKRFSL  863 (1463)
T ss_pred             HH------------------HHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHH
Confidence            44                  445555666677 3333    222222  123345567777888777774    444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy8139         160 MKQKASVIQQWYRNTKLMRL  179 (1101)
Q Consensus       160 ~~~aa~~IQ~~~R~~~~rr~  179 (1101)
                      +.+..+.+|..+|--.++|.
T Consensus       864 L~k~~i~~~~~~r~~~a~r~  883 (1463)
T COG5022         864 LKKETIYLQSAQRVELAERQ  883 (1463)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            56666777777776666554

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.19  E-value=7e-06  Score=72.06  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=59.7

Q ss_pred             EEeeCCEEEEEEEEeec-----CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         559 LFEMGEIIKLKVSMAGM-----PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-----p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .+..|.+..|.|...+.     |.|.+.|++++.++....... .   ..+.|.|.++...|+|.|+|.|.|..|.....
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~   81 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN   81 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence            67789999999987643     578999999999987654332 2   36789999999999999999999998876655


Q ss_pred             EEEE
Q psy8139         634 FLVT  637 (1101)
Q Consensus       634 ~~l~  637 (1101)
                      ....
T Consensus        82 ~t~t   85 (92)
T cd05757          82 VTRT   85 (92)
T ss_pred             EEEE
Confidence            4433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.18  E-value=7.8e-06  Score=71.73  Aligned_cols=72  Identities=13%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCEEe-e-------------cCCcEEEEe---cCCeeEEEEeecCCCCCEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-F-------------SSRRQRIVT---DNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~-~-------------~~~~~~~~~---~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +.+..|++++|.|.+.+.+.+.+.|++++... .             ...++....   ..+...|+|.++..+|+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            35678999999999999999999999765322 1             111222222   334568999999999999999


Q ss_pred             EEEEeCCCc
Q psy8139         525 CTATNRAGH  533 (1101)
Q Consensus       525 C~a~n~~g~  533 (1101)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999887654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.17  E-value=5.1e-06  Score=72.45  Aligned_cols=72  Identities=13%  Similarity=0.198  Sum_probs=56.6

Q ss_pred             CceeEEccCCeEEEEEE-EeccCCCeEEEEECCEE-eecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEEeCCCc
Q psy8139         459 LHDTTALEDEKVEFTVQ-VEGIPTPKVSWYKDGFE-IFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTATNRAGH  533 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~~g~  533 (1101)
                      ...+.+.+|+.+.|.|. ..|.|.|.|.|..++.. +....++.+..+   +.|.|.++...|.| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEccccc
Confidence            46678999999999997 69999999999987654 333344433322   48999999999999 799999987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.17  E-value=2.3e-05  Score=69.04  Aligned_cols=74  Identities=39%  Similarity=0.703  Sum_probs=53.8

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         701 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       701 ~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      +.++.|+|.+|...+ +.+.+|.|.+...+...|..+.........+.+.+|.|++.|.|+|.|.+..|.|.++.
T Consensus        14 ~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~   87 (93)
T cd00063          14 STSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE   87 (93)
T ss_pred             CCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence            345555555543332 34678999988776566776655324678899999999999999999999988876654

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.17  E-value=8.4e-06  Score=71.66  Aligned_cols=80  Identities=23%  Similarity=0.268  Sum_probs=58.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC-CceeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG-EDVAS  633 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G-~~~~s  633 (1101)
                      .+.+..|+++.|.|.+.+ |.+.+.|++++..+....  ...+...  ...|.|.++++.|.|.|.|.|.|..+ ....+
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            346788999999999877 888999999988775432  1112211  34589999999999999999987655 33445


Q ss_pred             EEEEEe
Q psy8139         634 FLVTVT  639 (1101)
Q Consensus       634 ~~l~v~  639 (1101)
                      ..|.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            566554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>KOG4258|consensus

Probab=98.11  E-value=5.4e-05  Score=87.73  Aligned_cols=81  Identities=22%  Similarity=0.379  Sum_probs=61.5

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      +.+++.|.|.+|..++|. |++|.|.|+..+...-.....  .........+.+|.|| .|.++|+|..-+|.|.+...+
T Consensus       841 ~~~~v~l~w~EP~~pNGl-i~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~  918 (1025)
T KOG4258|consen  841 EMNSVILRWLEPKEPNGL-ILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESV  918 (1025)
T ss_pred             CcceEEEecCCCCCCCcc-EEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCc
Confidence            567899999999887776 999999999887654333221  1133456678888888 599999999999999987766


Q ss_pred             CcEEe
Q psy8139         778 EPLTV  782 (1101)
Q Consensus       778 ~~~t~  782 (1101)
                      .+...
T Consensus       919 ~~~v~  923 (1025)
T KOG4258|consen  919 IFYVS  923 (1025)
T ss_pred             ceEEe
Confidence            66654

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.11  E-value=1.1e-05  Score=70.72  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECC--EEe----ecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE-eCCCce
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDG--FEI----FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT-NRAGHS  534 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~~~----~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~-n~~g~~  534 (1101)
                      +.+.+|+++.|.|.. +.|.|.+.|++.+  ...    ....++..  .+  ..|.|.++.++|+|.|+|.|. |..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE--RGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec--CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            457889999999996 5788999999832  111    11223322  22  269999999999999999998 465555


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      .....|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            556666664

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.11  E-value=3e-05  Score=67.82  Aligned_cols=83  Identities=13%  Similarity=0.217  Sum_probs=66.3

Q ss_pred             eeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecC-----CeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDN-----DISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~-----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      .+.|..|+++.|.|.+.+.|.|. +.|.+++..+............     -.+.|.+..+...+.|.|+|.|.|..+..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45688999999999999999997 9999988766543321222211     34689999999999999999999999988


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      +.+..|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888877764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.11  E-value=1.2e-05  Score=69.95  Aligned_cols=77  Identities=18%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeccCC--CeEEEEECCEEeec---CCc--EEE-EecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         467 DEKVEFTVQVEGIPT--PKVSWYKDGFEIFS---SRR--QRI-VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~---~~~--~~~-~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      |+++.|.|.+.+.+.  ..+.|..++.....   ...  ... ......+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            688999999987654  47799887753311   111  000 1122346899999999999999999999998888888


Q ss_pred             EEeec
Q psy8139         539 RLRLE  543 (1101)
Q Consensus       539 ~l~V~  543 (1101)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG4258|consensus

Probab=98.09  E-value=1.3e-05  Score=92.73  Aligned_cols=124  Identities=18%  Similarity=0.207  Sum_probs=80.5

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeC--------------CCCCceeeccccc-------CccEEEEcCCCCCce
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--------------GSPYWVRASPHMV-------EDTELMVSGLEPGWR  757 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~--------------~~~~~~~~~~~~~-------~~~~~~i~~L~p~t~  757 (1101)
                      .+.+++.|+|..-....--...+|.+.|++.              ++..|......+.       ...-+.+.+|+|+|.
T Consensus       499 ~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~Tq  578 (1025)
T KOG4258|consen  499 TSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQ  578 (1025)
T ss_pred             eecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccce
Confidence            4678999999873222223488999999865              2356766544322       112458999999999


Q ss_pred             EEEEEEEEcC--CccCCCCCCCCcEEecCCCCCCCCCccc-c-cccccceeccccCCCCCCccccceeee
Q psy8139         758 YQFRITAENV--VGFSEPGPLSEPLTVTYQRSPAAAPSFI-R-ALHDTTALEDEKPRNTNNCDYESKRTF  823 (1101)
Q Consensus       758 Y~~~V~A~n~--~G~g~~S~~s~~~t~~~~~~P~~~p~~~-~-~~~~s~~~~~w~p~~~~~~~~~~~~~~  823 (1101)
                      |-|-|.+...  ++...- ..|.+.-+.+...-|.||... . ..+++.+++.|+||..+|+.+..|.+.
T Consensus       579 YAvfVkT~t~t~~~~~~~-A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~  647 (1025)
T KOG4258|consen  579 YAVFVKTLTVTEAHEAYE-AKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVV  647 (1025)
T ss_pred             eEEEEeeeehhhhccccc-cccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEE
Confidence            9999999843  333221 345555554434444555444 4 444456788999999999987777443

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.05  E-value=1.3e-05  Score=70.11  Aligned_cols=72  Identities=24%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             CeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecC--CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         557 GLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLT--SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ...+.+|..+.|.|.. .|.|.+.+.|.+++.++.  .+.+.  .....++.|.|.+++..|.|.|.|.|.|..+..
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4478889999999965 578999999999987642  22222  233346899999999999999999999987654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.05  E-value=6.1e-05  Score=66.08  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEe--------ecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--------FSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .++++.+|++++|.|.+.+.....+.|++.+..+        ....++.... .+...+|+|.+++..|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4678899999999999998877778888766432        2345666654 456678999999999999999999763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA03376 BARF1; Provisional

Probab=98.04  E-value=0.00016  Score=68.98  Aligned_cols=123  Identities=20%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             eEEccCCeEEEEEEEec---cCCCeEEEEECCE----Ee-e------------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         462 TTALEDEKVEFTVQVEG---IPTPKVSWYKDGF----EI-F------------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g---~p~~~v~W~~~g~----~~-~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      +.+..|+.+.|+|....   .+...|.|++.+.    .+ .            .-.++.+..+.+..+|.|.+++++|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            45678999999998762   2344799999421    11 0            112334444467779999999999999


Q ss_pred             EEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCe
Q psy8139         522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE  587 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~  587 (1101)
                      +|+|............-.|.+..|-.........   ....-+...+.|..-|.|.|.++|..+..
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~---dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS---QFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeeeecceEEEEeccc---cCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9999998765444333333332222111110000   00013456789998899999999987543

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.03  E-value=1.3e-05  Score=65.33  Aligned_cols=61  Identities=26%  Similarity=0.419  Sum_probs=46.2

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCCee--EEEEeecCCCCCEEEEEEE
Q psy8139         467 DEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       467 g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      |++++|.|.+ .+.+.+.+.|.+++..............+...  .|.|.++...|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 88888899999988755443333333332211  3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.98  E-value=2.6e-05  Score=63.02  Aligned_cols=62  Identities=31%  Similarity=0.536  Sum_probs=50.7

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      |+++.|.|.+.+.+.+.+.|++++..+..  ..  ........|.|.++...|.|.|+|.+.|..|
T Consensus         2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        2 GQSVTLTCPAEGDPVPNITWLKDGKPLPE--SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CceEEEEeeCccCCCCeEEEEECCEECCC--CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            77899999988899999999999887762  11  1223356899999999999999999999765

>smart00409 IG Immunoglobulin

Probab=97.97  E-value=0.00012  Score=63.27  Aligned_cols=81  Identities=28%  Similarity=0.573  Sum_probs=65.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +.+..|+++.|.|.+.+.+.+.+.|.++ +..+.....+.........+|.|.++...|.|.|.|.+.|..|.......+
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            4677899999999999988999999998 887765556666555546789999999999999999999887776555555


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        84 ~V   85 (86)
T smart00409       84 TV   85 (86)
T ss_pred             EE
Confidence            44

>smart00410 IG_like Immunoglobulin like

Probab=97.97  E-value=0.00012  Score=63.27  Aligned_cols=81  Identities=28%  Similarity=0.573  Sum_probs=65.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +.+..|+++.|.|.+.+.+.+.+.|.++ +..+.....+.........+|.|.++...|.|.|.|.+.|..|.......+
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            4677899999999999988999999998 887765556666555546789999999999999999999887776555555


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        84 ~V   85 (86)
T smart00410       84 TV   85 (86)
T ss_pred             EE
Confidence            44

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.91  E-value=6.1e-05  Score=64.36  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .+.++..|+++.|.|...+. .+.+.|+++|..+..+.++.....+    |.|.++.++|+|.|.|.+. ..|....
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~   74 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQL   74 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence            46788999999999999876 5599999999988765555544333    8899999999999999987 3344433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.90  E-value=5.5e-05  Score=65.69  Aligned_cols=77  Identities=21%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CCEEEEEEEEeecC--CCeeEEEECCeecCCC---C--ce-EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTSG---G--RY-EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~---~--~~-~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      |+++.|.|.+.+++  ...+.|..++......   .  +. ........+.|.|.+++..|.|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            67789999999866  4578998876543210   1  00 011122367899999999999999999999998887777


Q ss_pred             EEEEe
Q psy8139         635 LVTVT  639 (1101)
Q Consensus       635 ~l~v~  639 (1101)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.88  E-value=0.0002  Score=62.76  Aligned_cols=84  Identities=20%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCCceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGGRYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..+.+..|+.+.|.|.+..+|.|. +.|.+++..+.......+....     -.+.|.+..+...+.|.|+|.|.|..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            345788999999999999999998 9999988766433221112111     2478999999999999999999999998


Q ss_pred             ceeEEEEEEe
Q psy8139         630 DVASFLVTVT  639 (1101)
Q Consensus       630 ~~~s~~l~v~  639 (1101)
                      .+.+..|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888877764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.87  E-value=4.7e-05  Score=65.60  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             EEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      .+.+|++++|.|.+.+ .+.+.+.|+++|..+...        .....+.|.++++.|+|.|+|.|.|..|..
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            5778999999999854 567789999998766421        124679999999999999999999998854

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.85  E-value=0.00011  Score=64.57  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECC--eec----CCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE-eCCCCc
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNG--EPL----TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV-NSLGED  630 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g--~~l----~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~-N~~G~~  630 (1101)
                      +.+.+|+++.|.|.. +.|.|.++|++.+  ...    ..+.++...    .++|.|.++++.|+|.|.|.|. |..|..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            356779999999996 5788999999732  221    112233322    4569999999999999999998 455555


Q ss_pred             eeEEEEEEe
Q psy8139         631 VASFLVTVT  639 (1101)
Q Consensus       631 ~~s~~l~v~  639 (1101)
                      .....|.|.
T Consensus        81 ~~~~~l~v~   89 (91)
T cd05871          81 LAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEe
Confidence            556666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG2128|consensus

Probab=97.85  E-value=0.0015  Score=80.62  Aligned_cols=158  Identities=18%  Similarity=0.147  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8139          69 AVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELK-QACVSVQQRWRAN  147 (1101)
Q Consensus        69 a~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~-~aa~~iQ~~~R~~  147 (1101)
                      ..+.++.++|++.+....-.           ..........-+..|+..||...+...-..+...- ....++|+..||+
T Consensus       480 ~~k~~~~~~~~l~~~~~~~~-----------~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~  548 (1401)
T KOG2128|consen  480 EMKWLAYIYGNLVREAKKWL-----------LEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGF  548 (1401)
T ss_pred             hhhhHHHhhhhhhhhhhccc-----------cHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhcccc
Confidence            34667778887775543222           22233333444557888887755544444443322 2234559999999


Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy8139         148 LTMRKQRAHFLLMKQ---KASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRER---YVALRTATITI  221 (1101)
Q Consensus       148 ~~r~~~r~~~~~~~~---aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~---~~~~~~a~i~i  221 (1101)
                      ..|.+.+....-++.   ....||+.|||++.--....++.....-+..+|++.||+++++...+.   |+....+++.|
T Consensus       549 ~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~i  628 (1401)
T KOG2128|consen  549 STRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKI  628 (1401)
T ss_pred             chHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHH
Confidence            988766655444332   788999999999852222345556667888899999999986644333   44455689999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8139         222 QTRFRAYLIAKNQRDE  237 (1101)
Q Consensus       222 Q~~~Rg~~~R~~~~~~  237 (1101)
                      |+.+|++..|+.++..
T Consensus       629 qs~~r~f~~r~~y~~L  644 (1401)
T KOG2128|consen  629 QSKIRKFPNRKDYKLL  644 (1401)
T ss_pred             HHHHHhcccchHHHHH
Confidence            9999999999888754

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.85  E-value=0.00015  Score=64.59  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCee-c-------CCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP-L-------TSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~-l-------~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      ..+.+..|+++.|.|.+.+.+.+.+.|++.+.. +       ....++.+.. .....+|.|.+++..|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            345788899999999999888899999753221 1       1123554422 234568999999999999999999876


Q ss_pred             CCCceeEEEEE
Q psy8139         627 LGEDVASFLVT  637 (1101)
Q Consensus       627 ~G~~~~s~~l~  637 (1101)
                      .. .+.++.|+
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            43 35555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.84  E-value=5e-05  Score=66.65  Aligned_cols=71  Identities=14%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeec-C-------------CCCceEEEe---ecceEEEEEccCCCCCCeEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-T-------------SGGRYEITH---TDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l-~-------------~~~~~~~~~---~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+..|++++|.|...+.+.+.+.|++++... .             ..+++....   ..+..+|+|.+|+..|+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            5677999999999999999999998655221 1             111222222   2335679999999999999999


Q ss_pred             EEEeCCCC
Q psy8139         622 HGVNSLGE  629 (1101)
Q Consensus       622 ~A~N~~G~  629 (1101)
                      .+.|..+.
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99988765

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.82  E-value=4.4e-05  Score=64.47  Aligned_cols=73  Identities=30%  Similarity=0.461  Sum_probs=49.7

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      |.+...+.......+. +.|.|.+.+.+ .+.++|+ ........  .........+.|.|.++...|.|.|+|.|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            5555555555555555 99999999988 7899999 11111111  1111123345899999999999999999987

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.78  E-value=5.9e-05  Score=65.87  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             CCeEEeeCCEEEEEEE-EeecCCCeeEEEECCee-cCCCCceEEEeecceEEEEEccCCCCCCe-EEEEEEEeCCCC
Q psy8139         556 DGLLFEMGEIIKLKVS-MAGMPPPTARWLHNGEP-LTSGGRYEITHTDRYLNLRISDARRADRG-EYQAHGVNSLGE  629 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~-~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~sl~i~~l~~~~~y-~y~c~A~N~~G~  629 (1101)
                      ..+.+.+|.++.|.|. ..|.|.|.+.|..++.. +..+.++.+.   .++.|.|.+++..|.| .|.|.|.|....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~---~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG---QNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC---CCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            4568889999999997 68999999999976544 3333443332   2588999999999999 899999998654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.77  E-value=9.4e-05  Score=63.37  Aligned_cols=69  Identities=33%  Similarity=0.596  Sum_probs=52.8

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC-ceeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE-DVASFLVT  637 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~  637 (1101)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+..+          ...+.+..+...+.|.|+|.|.|..|. .+.+..|+
T Consensus        10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS----------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE----------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee----------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            6788999999999999989999999988665521          112667888999999999999996653 23344443

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.77  E-value=0.00013  Score=63.93  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             EEccCCeEEEEEEE-e----ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         463 TALEDEKVEFTVQV-E----GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~-~----g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      .+..|.+..|.|.- .    ..+.+.++|++++.++........... +.+.|.|.++.++|+|.|+|.+.+..|...
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            45678889999962 2    346679999999998864432222111 233799999999999999999999876543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.73  E-value=0.00022  Score=62.64  Aligned_cols=80  Identities=19%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             eeEEccCCeEEEEEEEe-----------ccCCCeEEEEECCEEeecCCc-----EEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         461 DTTALEDEKVEFTVQVE-----------GIPTPKVSWYKDGFEIFSSRR-----QRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~-----------g~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      ...+.+|+++.|.|..-           ..+...+.|+|++..+.....     .++...+.  .|.|.++..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence            45688999999999851           122347999999755443221     23443444  8999999999999999


Q ss_pred             EEEEeCCCceEEEEEEee
Q psy8139         525 CTATNRAGHSITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~~~~s~~l~V  542 (1101)
                      |.+.|.......+..|+|
T Consensus        87 C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          87 CVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEECCCCcceEEEEEEEC
Confidence            999998877666665554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.72  E-value=0.00013  Score=59.50  Aligned_cols=61  Identities=30%  Similarity=0.513  Sum_probs=45.6

Q ss_pred             CCEEEEEEEE-eecCCCeeEEEECCeecCCCCceEEEeecc-e-EEEEEccCCCCCCeEEEEEE
Q psy8139         563 GEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDR-Y-LNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       563 g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~-~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      |+.++|.|.+ .+.+...+.|.+++................ . ..|.|.++++.|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6789999999 777889999999987765433222222111 1 13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG4802|consensus

Probab=97.71  E-value=0.00014  Score=77.23  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=89.8

Q ss_pred             eCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc---ccccc--c
Q psy8139         728 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR---ALHDT--T  802 (1101)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~---~~~~s--~  802 (1101)
                      ..+...|..+... .....+.++++.||..|.|+|.|+|..|.-.+|.++...-.+.++.+|.+|.+..   ...++  .
T Consensus       193 e~~~thwQtv~~t-~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~  271 (516)
T KOG4802|consen  193 ELGPTHWQTVEKT-MEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYM  271 (516)
T ss_pred             ccccccceeeeec-CCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEE
Confidence            3344577776653 4455889999999999999999999999877777777776665555566666554   11111  2


Q ss_pred             eeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCc
Q psy8139         803 ALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDY  882 (1101)
Q Consensus       803 ~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~  882 (1101)
                      .+++|-|+..             +-|+-            .|+|.|.--.......  ....+.+.-......+..|.|+
T Consensus       272 ~~v~w~P~~s-------------dlPv~------------~Yki~Ws~~v~s~k~~--m~tks~~~k~thq~si~~L~Pn  324 (516)
T KOG4802|consen  272 LKVVWCPSKS-------------DLPVE------------KYKITWSLYVNSAKAS--MITKSSYVKDTHQFSIKELLPN  324 (516)
T ss_pred             EEEEeCCCCC-------------CCcce------------eeEEEeehhhhhhhhh--cccccceeeccchhhhhhcCCC
Confidence            3456655322             12333            6777664333111100  0000111100001115555588


Q ss_pred             ccce--eeccccccc----CceeecccCCCCccCC
Q psy8139         883 FPEK--TIDESVYGY----DTIVYGYDSDDLDRHY  911 (1101)
Q Consensus       883 t~Y~--V~a~n~~G~----~~~v~~~t~e~~P~~~  911 (1101)
                      ..|-  |+|....|.    ++.+..++....|..+
T Consensus       325 s~Y~VevqAi~y~g~~rLksek~~~F~~T~~~l~~  359 (516)
T KOG4802|consen  325 SSYYVEVQAISYLGSRRLKSEKWMLFNTTLQPLEP  359 (516)
T ss_pred             CeEEEEEEEEEeccCcccccceEEEEeeccCcCCC
Confidence            8888  999888886    6655555544444433

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.70  E-value=0.00024  Score=61.27  Aligned_cols=66  Identities=23%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEeecCCcEEE-EecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRI-VTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~-~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      +.|.|.+.| .|.+.++|+++|..+........ ...++    .+.|.|......+.+.|+|.|.|......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~   73 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG   73 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence            689999987 68889999999988754322111 11221    23677777667788999999998764433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.69  E-value=9.6e-05  Score=65.09  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      |.+...|. ..|..|++++|.|... .+...+.|+++|......   .....+....|.|.++++.|+|.|+|.+.+.
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            44444553 4688999999999886 566789999998754321   1112344558999999999999999999885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.68  E-value=0.0002  Score=65.73  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCE---Ee-----------ecCCcEEEEec--CCeeEEEEeecCCCCCE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF---EI-----------FSSRRQRIVTD--NDISTLIIHQAALMDEG  521 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~---~~-----------~~~~~~~~~~~--~~~~~l~I~~l~~~d~g  521 (1101)
                      .|..+.+..|++++|.|.+.+.+...+.|++...   +.           ....++.+...  .+...|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            4567789999999999999987888999998431   10           11234444432  35679999999999999


Q ss_pred             EEEEEEEeCC
Q psy8139         522 EIKCTATNRA  531 (1101)
Q Consensus       522 ~Y~C~a~n~~  531 (1101)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.64  E-value=0.00022  Score=62.56  Aligned_cols=73  Identities=14%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             EEeeCCEEEEEEEE-e----ecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         559 LFEMGEIIKLKVSM-A----GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~-~----g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .+..|....|.|.. .    ..+.+.+.|++++.++........ ...+.+.|.|.++.++|+|.|+|.|.|..|....
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            45668888999974 2    235679999999999875432211 1122457999999999999999999999776544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.62  E-value=0.00025  Score=59.73  Aligned_cols=64  Identities=22%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             EEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEec---CCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         470 VEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTD---NDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       470 v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ++|+|.. .|.|++.|+|++++..+..... ....+   ...++|.+.....+|.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            6899977 5789999999999998864321 00000   123478888888999999999999988764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.60  E-value=7.8e-05  Score=44.89  Aligned_cols=21  Identities=38%  Similarity=0.782  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHH
Q psy8139         277 HQCAVKIQSLWKMYRVRKKFA  297 (1101)
Q Consensus       277 ~~aa~~iQs~~r~~~~r~~~~  297 (1101)
                      +.||+.||+.||||+.|++|.
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            468999999999999999884

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.60  E-value=0.00026  Score=65.08  Aligned_cols=74  Identities=15%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCE---E--ee-------------cCCcEEEEecC-CeeEEEEeecCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF---E--IF-------------SSRRQRIVTDN-DISTLIIHQAAL  517 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~---~--~~-------------~~~~~~~~~~~-~~~~l~I~~l~~  517 (1101)
                      ..|..+.+.+|++++|.|...+ +.+.+.|++...   +  +.             ...++...... ....|+|.++.+
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3466778999999999999988 777899998431   1  10             01334333332 456899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy8139         518 MDEGEIKCTATNRA  531 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~  531 (1101)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.59  E-value=0.00044  Score=63.03  Aligned_cols=75  Identities=12%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             eecCceeEEccCCeEEEEEEEeccC-CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      ...|..+.+.+|++++|.|.+.+.. ...+.|++..  .   .+.         ...++.....+....|+|.++.++|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3456677899999999999987665 5679999742  1   111         01244443344556899999999999


Q ss_pred             EEEEEEEEeC
Q psy8139         521 GEIKCTATNR  530 (1101)
Q Consensus       521 g~Y~C~a~n~  530 (1101)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.53  E-value=0.00056  Score=62.32  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             cCCeEEEEEEEeccC------------CCeEEEEEC--CE--E-ee---------c--CCcEEEEe---cCCeeEEEEee
Q psy8139         466 EDEKVEFTVQVEGIP------------TPKVSWYKD--GF--E-IF---------S--SRRQRIVT---DNDISTLIIHQ  514 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p------------~~~v~W~~~--g~--~-~~---------~--~~~~~~~~---~~~~~~l~I~~  514 (1101)
                      .|++++|.|......            .+.|.|++.  |.  . +.         .  ..++.+..   ..+..+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999886432            458999984  21  1 10         0  12444432   33567999999


Q ss_pred             cCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         515 AALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +..+|+|.|.|.+.+..........|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999776666666666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG0164|consensus

Probab=97.52  E-value=0.00073  Score=76.77  Aligned_cols=54  Identities=41%  Similarity=0.648  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          40 SKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKA  119 (1101)
Q Consensus        40 ~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~  119 (1101)
                      .-++.||++|||++    +|.+|++++.+++.|+ |||.+                         +.+..+..||+.+||
T Consensus       697 ~lvtllQK~~RG~~----~R~ry~rmka~~~ii~-wyR~~-------------------------K~ks~v~el~~~~rg  746 (1001)
T KOG0164|consen  697 SLVTLLQKAWRGWL----ARQRYRRMKASATIIR-WYRRY-------------------------KLKSYVQELQRRFRG  746 (1001)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHH-------------------------HHHHHHHHHHHHHHh
Confidence            66777888888888    7888888887777777 77754                         334456677777775


Q ss_pred             HHHH
Q psy8139         120 KLLM  123 (1101)
Q Consensus       120 ~~~~  123 (1101)
                      +..|
T Consensus       747 ~k~~  750 (1001)
T KOG0164|consen  747 AKQM  750 (1001)
T ss_pred             hhhc
Confidence            5433

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.51  E-value=0.00074  Score=61.52  Aligned_cols=78  Identities=19%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             cCCeEEEEEEEeccC------CCeEEEEECC-----E-Eee--cCC--------cEEEE---ecCCeeEEEEeecCCCCC
Q psy8139         466 EDEKVEFTVQVEGIP------TPKVSWYKDG-----F-EIF--SSR--------RQRIV---TDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p------~~~v~W~~~g-----~-~~~--~~~--------~~~~~---~~~~~~~l~I~~l~~~d~  520 (1101)
                      .|++++|.|.....+      .+.|.|++..     . .+.  ...        +.++.   ...+..+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999987653      4589999862     1 111  111        11111   123556999999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeec
Q psy8139         521 GEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      |.|.|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999987776777777765

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.51  E-value=0.0007  Score=58.33  Aligned_cols=67  Identities=15%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             EEEEEEEee-cCCCeeEEEECCeecCCCCceE-EEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYE-ITHTDR----YLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      +.|.|.+.| .|.+.++|+++|.++..+.... ....+.    .+.|.+......+.+.|+|.|.|.......
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence            579999987 5888999999999876432211 111111    245777777677889999999998655433

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.49  E-value=0.0012  Score=60.77  Aligned_cols=76  Identities=14%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             cCceeEEccCCeEEEEEEEecc----CCCeEEEEE---------------CCEEee-cC----CcEEEEe--cCCeeEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGI----PTPKVSWYK---------------DGFEIF-SS----RRQRIVT--DNDISTLI  511 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~---------------~g~~~~-~~----~~~~~~~--~~~~~~l~  511 (1101)
                      .+..+.+..|+++.|.|.....    +...|+|..               +|.... ..    ++..+..  ..+..++.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            3556788999999999998653    234799933               233221 11    2333322  23456899


Q ss_pred             EeecCCCCCEEEEEEEEeCCCc
Q psy8139         512 IHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |.+++.+|.|.|+|.+.|..+.
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCc
Confidence            9999999999999999987654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.45  E-value=0.00019  Score=43.22  Aligned_cols=18  Identities=44%  Similarity=0.816  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8139          13 AKTILIQTLWRSKLAMRR   30 (1101)
Q Consensus        13 ~aa~~iQ~~~Rg~~~r~~   30 (1101)
                      +||+.||+.|||+++|++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~   19 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKR   19 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            345555555555555443

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.44  E-value=0.00099  Score=58.48  Aligned_cols=70  Identities=13%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .++.+.+|+++.|.|.+.+.....+.|++.+..+        ..+.++.... ++...+|.|.+++..|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            3567889999999999999877788888755322        2455666554 45566899999999999999999864

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.41  E-value=0.00074  Score=62.74  Aligned_cols=72  Identities=22%  Similarity=0.352  Sum_probs=53.6

Q ss_pred             cCceeEEccCCeEEEEEEEec--cCCCeEEEEEC--CE-E--ee--------------cCCcEEEEecC--CeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKD--GF-E--IF--------------SSRRQRIVTDN--DISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~--g~-~--~~--------------~~~~~~~~~~~--~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|...+  .+.+.+.|++.  +. +  +.              ...++.+....  ....|+|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            355677889999999999987  67778999984  21 1  00              12455554444  567899999


Q ss_pred             cCCCCCEEEEEEEEe
Q psy8139         515 AALMDEGEIKCTATN  529 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n  529 (1101)
                      +..+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.41  E-value=0.00082  Score=56.64  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             EEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         566 IKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       566 ~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      ++|.|... +.|.+.+.|++++.++..........  ....++|.|......+.+.|+|.|.|..+.+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            57899887 56899999999999986432100000  01245788888888999999999999988653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.39  E-value=0.0012  Score=59.39  Aligned_cols=76  Identities=18%  Similarity=0.367  Sum_probs=48.1

Q ss_pred             CCeEEEEEEEeccCC---CeEEEEECCE--Ee---------ec------CCcEEEEe---cCCeeEEEEeecCCCCCEEE
Q psy8139         467 DEKVEFTVQVEGIPT---PKVSWYKDGF--EI---------FS------SRRQRIVT---DNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~---~~v~W~~~g~--~~---------~~------~~~~~~~~---~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      |++++|.|...+...   ..+.|++...  .+         ..      ..+..+..   ..+..+|.|.++...|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            567888887753221   2577776431  11         10      02333321   13456899999999999999


Q ss_pred             EEEEEeCCCceEEEEEEee
Q psy8139         524 KCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l~V  542 (1101)
                      .|.+.|..+.......|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987776555555554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.38  E-value=0.00077  Score=57.69  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ...+..|+.+.|.|...+. .+.+.|.++|.++..+.++....    ..+.|..+.+.|+|.|.|.+. ..|.....+
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~   76 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSE-EEGFQQLVA   76 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence            3477889999999998875 67999999999987665555443    337899999999999999986 445544433

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.38  E-value=0.0006  Score=62.03  Aligned_cols=70  Identities=20%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             EEccCCeEEEEEEEecc-CCCeEEEEECCE-----Eee------------cCCcEEEEecC--CeeEEEEeecCCCCCEE
Q psy8139         463 TALEDEKVEFTVQVEGI-PTPKVSWYKDGF-----EIF------------SSRRQRIVTDN--DISTLIIHQAALMDEGE  522 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~-----~~~------------~~~~~~~~~~~--~~~~l~I~~l~~~d~g~  522 (1101)
                      .+..|++++|.|...+. +...+.|++...     .+.            ...++.+....  +..+|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57789999999999876 667899998432     110            11334433333  56799999999999999


Q ss_pred             EEEEEEeCCC
Q psy8139         523 IKCTATNRAG  532 (1101)
Q Consensus       523 Y~C~a~n~~g  532 (1101)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.36  E-value=0.0011  Score=60.47  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             cCCeEEEEEEEeccC------CCeEEEEECCE------E-e-ec----------CCcEEEEec-CCeeEEEEeecCCCCC
Q psy8139         466 EDEKVEFTVQVEGIP------TPKVSWYKDGF------E-I-FS----------SRRQRIVTD-NDISTLIIHQAALMDE  520 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p------~~~v~W~~~g~------~-~-~~----------~~~~~~~~~-~~~~~l~I~~l~~~d~  520 (1101)
                      .|++++|.|.....|      ...|.|++...      . + ..          ..++.+... .+..+|.|.++..+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999887653      34699998531      1 1 00          123333211 3356899999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeec
Q psy8139         521 GEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      |.|.|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988877777777764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.36  E-value=0.001  Score=59.79  Aligned_cols=68  Identities=22%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCE-----Eee--------------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGF-----EIF--------------SSRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~-----~~~--------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      ..+.+|+++.|.|.....+...++|++...     .+.              ..++..+..++   +|.|.+++..|+|.
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~   84 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF   84 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence            357889999999975433444899999521     111              11233333323   89999999999999


Q ss_pred             EEEEEEeCCC
Q psy8139         523 IKCTATNRAG  532 (1101)
Q Consensus       523 Y~C~a~n~~g  532 (1101)
                      |+|.+.+..+
T Consensus        85 Y~~~v~~~~~   94 (105)
T cd05774          85 YTLQTITTNF   94 (105)
T ss_pred             EEEEEEeCCc
Confidence            9999998764

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.34  E-value=0.00084  Score=57.10  Aligned_cols=68  Identities=34%  Similarity=0.596  Sum_probs=48.8

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      .+++++.|+|++|...++   .+|.+.|......   .|...... .....+.+.+|.|++.|.|+|.|.+..|.
T Consensus        12 ~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~   82 (83)
T smart00060       12 VTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVNGAGE   82 (83)
T ss_pred             EeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence            345589999998754432   6787777755432   35544432 23578999999999999999999998664

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.31  E-value=0.0017  Score=59.93  Aligned_cols=76  Identities=18%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccC----CCeEEEEEC----CEE--ee---------cC----CcEEEEe--cCCeeEEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP----TPKVSWYKD----GFE--IF---------SS----RRQRIVT--DNDISTLII  512 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~----g~~--~~---------~~----~~~~~~~--~~~~~~l~I  512 (1101)
                      .|..+.+..|++++|.|.....+    ...|.|++.    +..  +.         ..    .+..+..  ..+..+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            35677899999999999876433    236999751    111  10         01    1111111  123458999


Q ss_pred             eecCCCCCEEEEEEEEeCCCc
Q psy8139         513 HQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.22  E-value=0.0021  Score=58.71  Aligned_cols=77  Identities=17%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CCeEEEEEEEeccC----------CCeEEEEEC--CEEe--e---------c---CCcEEEE---ecCCeeEEEEeecCC
Q psy8139         467 DEKVEFTVQVEGIP----------TPKVSWYKD--GFEI--F---------S---SRRQRIV---TDNDISTLIIHQAAL  517 (1101)
Q Consensus       467 g~~v~L~C~~~g~p----------~~~v~W~~~--g~~~--~---------~---~~~~~~~---~~~~~~~l~I~~l~~  517 (1101)
                      |++++|.|.....+          ...|.|++.  +...  .         .   .++..+.   ...+..+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78899999886544          256999984  2110  0         0   1233332   123557899999999


Q ss_pred             CCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         518 MDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +|+|.|.|.+....+.......|.|.
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            99999999999877677777777765

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.21  E-value=0.0025  Score=55.70  Aligned_cols=76  Identities=38%  Similarity=0.697  Sum_probs=57.1

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .....++.|+|.++.... ..+..|.|.+.......|............+.|.+|.|++.|.+++.|.+..|.+.++
T Consensus        11 ~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s   86 (93)
T cd00063          11 DVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPS   86 (93)
T ss_pred             EecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCc
Confidence            445799999999985432 3577999999876545666554332355789999999999999999999887766443

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.20  E-value=0.0022  Score=57.37  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             CeEEEEEEEeccC---CCeEEEEECCEE----e-----------ec--CCcEEEEecC-CeeEEEEeecCCCCCEEEEEE
Q psy8139         468 EKVEFTVQVEGIP---TPKVSWYKDGFE----I-----------FS--SRRQRIVTDN-DISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       468 ~~v~L~C~~~g~p---~~~v~W~~~g~~----~-----------~~--~~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      ++++|.|.....+   ...|.|++....    +           ..  ..+..+.... +..+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4688999887654   336999985421    1           01  1111222111 356899999999999999999


Q ss_pred             EEe-CCCceEEEEEEee
Q psy8139         527 ATN-RAGHSITKARLRL  542 (1101)
Q Consensus       527 a~n-~~g~~~~s~~l~V  542 (1101)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            876 5566666666665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.20  E-value=0.002  Score=57.75  Aligned_cols=68  Identities=19%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             EEccCCeEEEEEEEecc--CCCeEEEEECCE---E--ee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         463 TALEDEKVEFTVQVEGI--PTPKVSWYKDGF---E--IF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~--p~~~v~W~~~g~---~--~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .+..|++++|.|...+.  ....+.|++...   +  +.         ...++.....+....|+|.+++++|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998765  456799998321   1  11         12355555555667899999999999999999


Q ss_pred             EEeC
Q psy8139         527 ATNR  530 (1101)
Q Consensus       527 a~n~  530 (1101)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.20  E-value=0.0011  Score=58.21  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+..|++++|.|... .+...+.|+++|......   .....+....+.|.++++.+.|.|+|...|.
T Consensus        12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            577899999999875 667789999998754321   1122344678999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.19  E-value=0.0017  Score=57.85  Aligned_cols=78  Identities=13%  Similarity=0.262  Sum_probs=51.4

Q ss_pred             ccCCeEEEEEEEec-cCCCeEEEEECCEEee-c------------CCc--EEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         465 LEDEKVEFTVQVEG-IPTPKVSWYKDGFEIF-S------------SRR--QRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~-~------------~~~--~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..|++|+|.|.... .....+.|++....+. .            ...  .++....+..+|+|.++..+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999997754 4445789998643211 0            011  122223445689999999999999999999


Q ss_pred             eCCCceE-EEEEEee
Q psy8139         529 NRAGHSI-TKARLRL  542 (1101)
Q Consensus       529 n~~g~~~-~s~~l~V  542 (1101)
                      +..|... ....|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            8876543 2344444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.19  E-value=0.0011  Score=58.52  Aligned_cols=68  Identities=10%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ...|..|++++|.|.... +...+.|+++|...................|.|..++++|+|.|.|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            456889999999998765 45579999988653211000011123345899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.18  E-value=0.0019  Score=56.86  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=55.0

Q ss_pred             eEEeeCCEEEEEEEEe-----------ecCCCeeEEEECCeecCCCCceE---EEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMA-----------GMPPPTARWLHNGEPLTSGGRYE---ITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~-----------g~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      ..+.+|+++.|.|...           ......+.|++++..+.......   .........|.|.++..+|+|.|+|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            4677899999999862           12234899999975554322110   011223668999999999999999999


Q ss_pred             EeCCCCceeEEEEE
Q psy8139         624 VNSLGEDVASFLVT  637 (1101)
Q Consensus       624 ~N~~G~~~~s~~l~  637 (1101)
                      .|.......+..|+
T Consensus        90 rN~t~C~~~~i~l~  103 (104)
T cd05896          90 RNSTYCMKVSMSLT  103 (104)
T ss_pred             CCCCcceEEEEEEE
Confidence            99876555555444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.08  E-value=0.0021  Score=56.74  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEee------------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIF------------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~------------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      |++|+|.|.....+...+.|++......                  ...+..+..+   .+|.|.+++..|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            6889999988776666899998542210                  0122222222   589999999999999999998


Q ss_pred             eCCCce
Q psy8139         529 NRAGHS  534 (1101)
Q Consensus       529 n~~g~~  534 (1101)
                      ...|..
T Consensus        78 ~~~~~~   83 (92)
T cd05741          78 STNGVT   83 (92)
T ss_pred             cCCCcE
Confidence            876543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.05  E-value=0.0012  Score=55.51  Aligned_cols=60  Identities=28%  Similarity=0.521  Sum_probs=42.7

Q ss_pred             CCEEEEEEEEeecC-CCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         563 GEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       563 g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      +..+.|.|.+.+.+ .+.+.|+ .......  ............|.|.++...+.|.|+|.|.|
T Consensus        15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             TEEEEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeEEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            33399999999888 8899999 1111110  11122233467899999999999999999987

...

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.05  E-value=0.0039  Score=57.78  Aligned_cols=76  Identities=18%  Similarity=0.323  Sum_probs=50.5

Q ss_pred             cCceeEEccCCeEEEEEEEeccC----CCeEEEEECCE------Eee----------cC----CcEEEEe--cCCeeEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP----TPKVSWYKDGF------EIF----------SS----RRQRIVT--DNDISTLI  511 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~g~------~~~----------~~----~~~~~~~--~~~~~~l~  511 (1101)
                      .|..+.+..|++++|.|......    ...+.|++...      .+.          ..    .+..+..  ..+..+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            35677889999999999886432    24699986211      110          01    1122221  12346899


Q ss_pred             EeecCCCCCEEEEEEEEeCCCc
Q psy8139         512 IHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |.+++.+|+|.|.|.+.|..+.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999986553

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.03  E-value=0.0066  Score=55.93  Aligned_cols=73  Identities=21%  Similarity=0.275  Sum_probs=53.5

Q ss_pred             cCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCE-----Eee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         458 ALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGF-----EIF--------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~-----~~~--------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      .|..+.+..|++++|.|... ......+.|++...     .+.              ...+..+..+  ....+|.|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            46678899999999999998 45566899998221     111              0123333333  34678999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy8139         516 ALMDEGEIKCTATNR  530 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~  530 (1101)
                      ...|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SGGGEEEEEEEEEES
T ss_pred             CcCcCEEEEEEEEEC
Confidence            999999999999887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>KOG0165|consensus

Probab=97.01  E-value=0.1  Score=60.46  Aligned_cols=220  Identities=16%  Similarity=0.140  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8139           4 CRSDYLNLRAKTILIQTLWRSKLAMRRDERE--FC--------MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQ   73 (1101)
Q Consensus         4 ~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~--~~--------~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ   73 (1101)
                      .+..+-.+.+.....|+--+|+..++++..+  +.        .+..-|..+|..+-|++    .-..-.....+++-+=
T Consensus       419 ~~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~~~~~~~~~~~~~~~~l~aL~~~~~y~~~l----~~~na~~~~~SvicLL  494 (1023)
T KOG0165|consen  419 ERIKYSEFKKSTVILQALVRGWLVRKRVEQRAKIRLLHFTAAAYYHLNALRIQRAYKLYL----AVKNANKQVNSVICLL  494 (1023)
T ss_pred             ccchhHHHHHHHHHHHhcccceeechhhhhcCCHHHHHHHHHHHHHHHHHhhhhhhhHHH----HHHHhccccchhHHHH
Confidence            3455667788888889999999888865432  11        12234566777777777    3333333334555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          74 EWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQ  153 (1101)
Q Consensus        74 ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~  153 (1101)
                      ++.+..+.-+...-.|-......-...........+-..+|...+.+..+...|...    -..+.+|+.|+++.-+...
T Consensus       495 A~L~s~l~~k~~~~~~~~~~~L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~~~~R~~~----I~i~~~~a~~~~~~w~~~~  570 (1023)
T KOG0165|consen  495 AWLRARLQEKRFIQKYHSIKKLEHEVQSCLSQRNRAQSVIQKAVRHFLLRKKQRKFT----IGIIKIQALWRGYSWRKKN  570 (1023)
T ss_pred             HHHHHHHhcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHhhhhhhhh
Confidence            555554433222111111111111111111122233445566666554343333222    2234556666655533211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         154 RAHFLLMKQKASVIQQWYRNTKLMRL-----------------------EASYLHELKAATITIQRRYRANVAMRTQRER  210 (1101)
Q Consensus       154 r~~~~~~~~aa~~IQ~~~R~~~~rr~-----------------------~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~  210 (1101)
                      ..  ....+--..||.+|+-...-+.                       ...++.-...++..+|...+|..+    +..
T Consensus       571 ~~--~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~l~~~~~~~~~~~~n~~~~~a----~si  644 (1023)
T KOG0165|consen  571 DC--TKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKHLEVVTRLSPLCCENMAQSGA----ISI  644 (1023)
T ss_pred             cc--cccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHHhhHHHHhhHHHhhhhhhhch----hhH
Confidence            11  1111223457777775532111                       122333344677779999998888    556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         211 YVALRTATITIQTRFRAYLIAKNQRDE  237 (1101)
Q Consensus       211 ~~~~~~a~i~iQ~~~Rg~~~R~~~~~~  237 (1101)
                      +.....+...+|+.+|.++.++..+..
T Consensus       645 e~~~~~~~~~Lr~~~~~~~i~~~Iqv~  671 (1023)
T KOG0165|consen  645 EKIFVLIRSCLRSIPCMEVIRYAIQVL  671 (1023)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            666677889999999999988877643

>KOG4367|consensus

Probab=97.01  E-value=0.00077  Score=71.68  Aligned_cols=75  Identities=23%  Similarity=0.311  Sum_probs=64.0

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      ....++++|+|..|..+ +.+..||.++....+++.+..+..  +..+..+|.||.-++.|.-||.|+|..|.++.|.
T Consensus       449 ~t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~  523 (699)
T KOG4367|consen  449 CTHNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK  523 (699)
T ss_pred             hccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence            34678999999966433 467899999999888888888776  8899999999999999999999999999977654

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.01  E-value=0.0047  Score=56.30  Aligned_cols=78  Identities=17%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             CCEEEEEEEEeecC------------CCeeEEEEC--Cee---cC-----------CCCceEEEe---ecceEEEEEccC
Q psy8139         563 GEIIKLKVSMAGMP------------PPTARWLHN--GEP---LT-----------SGGRYEITH---TDRYLNLRISDA  611 (1101)
Q Consensus       563 g~~~~l~c~~~g~p------------~~~v~W~~~--g~~---l~-----------~~~~~~~~~---~~~~~sl~i~~l  611 (1101)
                      |++++|.|......            .+.+.|++-  |..   +.           ...++.+..   ..+..+|.|.+|
T Consensus         2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl   81 (112)
T cd05900           2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL   81 (112)
T ss_pred             CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence            78899999887543            468999973  210   10           012333332   335789999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         612 RRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       612 ~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      +.+|+|.|+|.+.+..........|.|.+
T Consensus        82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999998777777777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.99  E-value=0.0038  Score=57.22  Aligned_cols=72  Identities=22%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCee---c-----------CCCCceEEEee--cceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP---L-----------TSGGRYEITHT--DRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~---l-----------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+..|++++|.|...+.+...+.|++....   .           ...+++.+...  ....+|.|.++++.|+|.|.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence            45788899999999999888889999974211   0           11234444332  35778999999999999999


Q ss_pred             EEEEeCCC
Q psy8139         621 AHGVNSLG  628 (1101)
Q Consensus       621 c~A~N~~G  628 (1101)
                      |.+.+..+
T Consensus        87 C~~~~~~~   94 (109)
T cd04983          87 CALSESGG   94 (109)
T ss_pred             EEEecCCC
Confidence            99987643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG0164|consensus

Probab=96.96  E-value=0.013  Score=67.21  Aligned_cols=60  Identities=37%  Similarity=0.631  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         133 LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR  208 (1101)
Q Consensus       133 ~~~aa~~iQ~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r  208 (1101)
                      +..-+..||..|||+++    |.+|++++++++.|+ |||.|+.           +..+-.||+.+||+..|+..+
T Consensus       695 l~~lvtllQK~~RG~~~----R~ry~rmka~~~ii~-wyR~~K~-----------ks~v~el~~~~rg~k~~r~yg  754 (1001)
T KOG0164|consen  695 LPSLVTLLQKAWRGWLA----RQRYRRMKASATIIR-WYRRYKL-----------KSYVQELQRRFRGAKQMRDYG  754 (1001)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHH-----------HHHHHHHHHHHHhhhhccccC
Confidence            33445677778888774    455566777777776 7774432           344555777777776644333

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=96.92  E-value=0.00098  Score=42.66  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHH
Q psy8139         276 RHQCAVKIQSLWKMYRVRKKFA  297 (1101)
Q Consensus       276 ~~~aa~~iQs~~r~~~~r~~~~  297 (1101)
                      ++.+|+.||+.||||+.|++|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999983

Calmodulin-binding motif.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=96.91  E-value=0.0064  Score=55.35  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=55.2

Q ss_pred             CCEEEEEEEEeecC------CCeeEEEECCe---e-----cCC----------CCceEEEe-ecceEEEEEccCCCCCCe
Q psy8139         563 GEIIKLKVSMAGMP------PPTARWLHNGE---P-----LTS----------GGRYEITH-TDRYLNLRISDARRADRG  617 (1101)
Q Consensus       563 g~~~~l~c~~~g~p------~~~v~W~~~g~---~-----l~~----------~~~~~~~~-~~~~~sl~i~~l~~~~~y  617 (1101)
                      |+.++|.|.....|      ...|.|++...   +     +..          ..++.+.. ..+..+|.|.+++..|+|
T Consensus         2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG   81 (106)
T cd05877           2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG   81 (106)
T ss_pred             CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence            78899999887653      45799997431   0     000          12233221 123568999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEec
Q psy8139         618 EYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       618 ~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      .|.|.+.+..|.......|.|.+
T Consensus        82 ~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          82 RYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEecccceEEEEEEEEEE
Confidence            99999999888888888887764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.91  E-value=0.007  Score=54.29  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             eEEEEEEEeccC---CCeEEEEECCE-----Eee-----------c--CCcEEEEe--cCCeeEEEEeecCCCCCEEEEE
Q psy8139         469 KVEFTVQVEGIP---TPKVSWYKDGF-----EIF-----------S--SRRQRIVT--DNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       469 ~v~L~C~~~g~p---~~~v~W~~~g~-----~~~-----------~--~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      +++|.|.....+   ...|.|++...     .+.           .  .++..+..  ..+..+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578899876443   33788988321     111           0  02334432  2345689999999999999999


Q ss_pred             EEEe-CCCceEEEEEEee
Q psy8139         526 TATN-RAGHSITKARLRL  542 (1101)
Q Consensus       526 ~a~n-~~g~~~~s~~l~V  542 (1101)
                      .+.+ ..|.....+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 5565555556655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>KOG4152|consensus

Probab=96.89  E-value=0.18  Score=55.91  Aligned_cols=75  Identities=17%  Similarity=0.314  Sum_probs=51.5

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe----cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT----DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY  680 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~----~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~  680 (1101)
                      ...-..|-++..|.|++.|.|..|.+..+..+...    +.|..|+..... .+-..+.++|++|..+|...|..|....
T Consensus       648 ~~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~yl  726 (830)
T KOG4152|consen  648 KPVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYL  726 (830)
T ss_pred             cccccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhh
Confidence            33445677889999999999999988776555443    334555444332 3345789999999888776777666543

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=96.87  E-value=0.0074  Score=54.92  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=55.1

Q ss_pred             CCEEEEEEEEeecC------CCeeEEEECC---e---ec--CCCCc------e--EEE---eecceEEEEEccCCCCCCe
Q psy8139         563 GEIIKLKVSMAGMP------PPTARWLHNG---E---PL--TSGGR------Y--EIT---HTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       563 g~~~~l~c~~~g~p------~~~v~W~~~g---~---~l--~~~~~------~--~~~---~~~~~~sl~i~~l~~~~~y  617 (1101)
                      |+.++|.|.....+      .+.|.|.+..   .   .+  ..+..      +  .+.   ......+|.|.+++..|+|
T Consensus         2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G   81 (106)
T cd05714           2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG   81 (106)
T ss_pred             CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence            78899999987653      5799999852   1   01  01111      1  111   1235678999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEec
Q psy8139         618 EYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       618 ~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      .|.|.+.|..+.......|.|.+
T Consensus        82 ~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          82 RYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEcCCCceEEEEEEEEEE
Confidence            99999999877777788887764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.85  E-value=0.0048  Score=56.58  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=51.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCe--ecC----------------CCCceEEEeec-ceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGE--PLT----------------SGGRYEITHTD-RYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~--~l~----------------~~~~~~~~~~~-~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|...+ +...+.|++...  ...                ...++...... ...+|.|.+++++|+|
T Consensus         7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            457889999999999988 778999997421  110                01334433322 4578999999999999


Q ss_pred             EEEEEEEeCC
Q psy8139         618 EYQAHGVNSL  627 (1101)
Q Consensus       618 ~y~c~A~N~~  627 (1101)
                      .|.|.+.+..
T Consensus        86 ~Y~Ca~~~~~   95 (110)
T cd05899          86 VYLCASSLGG   95 (110)
T ss_pred             EEEEEeeCCC
Confidence            9999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.85  E-value=0.0045  Score=56.23  Aligned_cols=70  Identities=23%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             EEeeCCEEEEEEEEeec-CCCeeEEEECCee-----c------------CCCCceEEEeec--ceEEEEEccCCCCCCeE
Q psy8139         559 LFEMGEIIKLKVSMAGM-PPPTARWLHNGEP-----L------------TSGGRYEITHTD--RYLNLRISDARRADRGE  618 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~-----l------------~~~~~~~~~~~~--~~~sl~i~~l~~~~~y~  618 (1101)
                      .+..|++++|.|...+. +...+.|++....     +            ....++.+....  ...+|+|.+++..|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46679999999999986 6789999974321     0            011233333332  46789999999999999


Q ss_pred             EEEEEEeCCC
Q psy8139         619 YQAHGVNSLG  628 (1101)
Q Consensus       619 y~c~A~N~~G  628 (1101)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.82  E-value=0.0091  Score=54.20  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CCeEEEEEEEeccC-------CCeEEEEECC-----EEe------------e--cCCcEEEEec---CCeeEEEEeecCC
Q psy8139         467 DEKVEFTVQVEGIP-------TPKVSWYKDG-----FEI------------F--SSRRQRIVTD---NDISTLIIHQAAL  517 (1101)
Q Consensus       467 g~~v~L~C~~~g~p-------~~~v~W~~~g-----~~~------------~--~~~~~~~~~~---~~~~~l~I~~l~~  517 (1101)
                      |++++|.|...-.|       .+.|.|.+..     ...            .  ..++..+...   .+..+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67788888854322       3578888741     111            0  0123333321   2467999999999


Q ss_pred             CCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         518 MDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +|+|.|.|.+............|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999866666666667664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.81  E-value=0.0079  Score=54.05  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +..+|.|.+++..|+|.|+|.+.|..+..+....|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4578999999999999999999998777666666655

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.79  E-value=0.0091  Score=50.42  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=51.3

Q ss_pred             eEEccCCeEEEEEEEeccCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      ..+..|++++|+|..+..+.|  .|+|...+.....      ....+..+|.+..+...|+|..+|.+....-.......
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            357889999999999765555  8999875543221      11223448999999999999999999755333333333


Q ss_pred             Eee
Q psy8139         540 LRL  542 (1101)
Q Consensus       540 l~V  542 (1101)
                      +.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            433

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.78  E-value=0.016  Score=52.84  Aligned_cols=38  Identities=16%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       506 ~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +..+|.|.+++..|+|.|.|.+.+..........|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            45799999999999999999999988777777777765

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.74  E-value=0.0071  Score=56.09  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=52.9

Q ss_pred             ecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC--CEE---ee---------cCCcEEEEe--cCCeeEEEEeecCCCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--GFE---IF---------SSRRQRIVT--DNDISTLIIHQAALMD  519 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g~~---~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d  519 (1101)
                      ..|..+.+..|++++|.|..... ....+.|++.  +..   +.         ...++.+..  ..+..+|+|.++...|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            44667789999999999998754 4567999983  111   10         123455442  3456789999999999


Q ss_pred             CEEEEEEEEeC
Q psy8139         520 EGEIKCTATNR  530 (1101)
Q Consensus       520 ~g~Y~C~a~n~  530 (1101)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999998753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.67  E-value=0.015  Score=56.65  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             eeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEee----------c--CCcEE-EEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIF----------S--SRRQR-IVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~----------~--~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .+.|.+|++++|.|... +...+.++|++....+.          .  .++.. ...+-..+.++|.++...|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45788999999999974 55677899999633221          1  12333 22233456899999999999999998


Q ss_pred             EEeC-CC-ceEEEEEEeeccCC
Q psy8139         527 ATNR-AG-HSITKARLRLEAPP  546 (1101)
Q Consensus       527 a~n~-~g-~~~~s~~l~V~~~p  546 (1101)
                      ...- .| .....+-|.|..+.
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            7653 34 45556677776543

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=96.65  E-value=0.015  Score=53.54  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CeEEeeCCEEEEEEEEeecC----CCeeEEEE---------------CCeecC-CC----CceEEEe--ecceEEEEEcc
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP----PPTARWLH---------------NGEPLT-SG----GRYEITH--TDRYLNLRISD  610 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~---------------~g~~l~-~~----~~~~~~~--~~~~~sl~i~~  610 (1101)
                      .+.+..|+.+.|.|......    ...+.|..               +|.... ..    ++..+..  ..+..++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            34677899999999987642    45899943               222211 00    1222221  23467899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCc
Q psy8139         611 ARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ++.+|.|.|+|.+.|..+..
T Consensus        87 v~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             CCcccCEEEEEEEEcCCCcC
Confidence            99999999999999987643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.64  E-value=0.0077  Score=54.77  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             CeEEeeCCEEEEEEEEeecC-CCeeEEEECC--ee---cC---------CCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-PPTARWLHNG--EP---LT---------SGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g--~~---l~---------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.+.+|++++|.|.+.+.. ...+.|++..  ..   +.         ...++..........|.|.++++.|+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C   88 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC   88 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence            44788899999999987665 6789998632  11   00         1124444444456789999999999999999


Q ss_pred             EEEeC
Q psy8139         622 HGVNS  626 (1101)
Q Consensus       622 ~A~N~  626 (1101)
                      .+.+.
T Consensus        89 a~~~~   93 (106)
T cd04980          89 QQYGT   93 (106)
T ss_pred             EEeCC
Confidence            98754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.61  E-value=0.007  Score=53.50  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      .+..|++++|.|.... +...+.|+++|...................+.|..+++.++|.|+|...
T Consensus        11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            5778999999997765 5568999998865332100001112235578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.61  E-value=0.018  Score=51.22  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CeeEEEEeecCCCCCEEEEEEEEe-CCCceEEEEEEee
Q psy8139         506 DISTLIIHQAALMDEGEIKCTATN-RAGHSITKARLRL  542 (1101)
Q Consensus       506 ~~~~l~I~~l~~~d~g~Y~C~a~n-~~g~~~~s~~l~V  542 (1101)
                      +..+|+|.+++..|+|.|.|.+.| ..|..+....|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            346899999999999999999999 6776666677766

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.61  E-value=0.014  Score=53.36  Aligned_cols=78  Identities=21%  Similarity=0.352  Sum_probs=54.9

Q ss_pred             CCEEEEEEEEeecC----------CCeeEEEEC--CeecC--------------CCCceEEE---eecceEEEEEccCCC
Q psy8139         563 GEIIKLKVSMAGMP----------PPTARWLHN--GEPLT--------------SGGRYEIT---HTDRYLNLRISDARR  613 (1101)
Q Consensus       563 g~~~~l~c~~~g~p----------~~~v~W~~~--g~~l~--------------~~~~~~~~---~~~~~~sl~i~~l~~  613 (1101)
                      |++++|.|.....+          ...+.|++.  +....              ..++..+.   ...+..+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            77889999887644          367999874  21110              01233332   123467899999999


Q ss_pred             CCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         614 ADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      .|+|.|.|.+....+.......|.|.+
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999998777778888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.60  E-value=0.0095  Score=53.61  Aligned_cols=68  Identities=19%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecC--------C-----------CCceEEEeecceEEEEEccCCCCCCeEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------S-----------GGRYEITHTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~--------~-----------~~~~~~~~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+..|+.+.|.|.....+...+.|++......        .           .++..+.   .+++|.|.+++..|+|.|
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y   85 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY   85 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence            46679999999976655556999998532110        0           1122222   256899999999999999


Q ss_pred             EEEEEeCCCC
Q psy8139         620 QAHGVNSLGE  629 (1101)
Q Consensus       620 ~c~A~N~~G~  629 (1101)
                      +|.+.|..+.
T Consensus        86 ~~~v~~~~~~   95 (105)
T cd05774          86 TLQTITTNFQ   95 (105)
T ss_pred             EEEEEeCCcc
Confidence            9999988743

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>TIGR00864 PCC polycystin cation channel protein

Probab=96.57  E-value=3.4  Score=56.74  Aligned_cols=197  Identities=16%  Similarity=0.136  Sum_probs=104.1

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec-----------CceeEEccCCeEEEEEEEeccCCCeEEE
Q psy8139         418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA-----------LHDTTALEDEKVEFTVQVEGIPTPKVSW  486 (1101)
Q Consensus       418 ~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~-----------p~~~~v~~g~~v~L~C~~~g~p~~~v~W  486 (1101)
                      .|..++.|.|..|....+     +++.+..... .-.+...           +....+..+..+.|.-.........+.|
T Consensus      1569 tYtVtLTvtN~~Gs~~~T-----~~i~V~~~I~-GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW 1642 (2740)
T TIGR00864      1569 TFNIIVTAENDVGAAQAS-----IFLFVLQEIE-GLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSW 1642 (2740)
T ss_pred             eEEEEEEEecCCCcccee-----EEEEEeeccc-ceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEE
Confidence            677788899998875432     3444332111 1111111           1112344555666665544444456778


Q ss_pred             EECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEE--EEEEEEeCCCceEEEEEEeeccCCc-cccCCCCCCCeEEeeC
Q psy8139         487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE--IKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMG  563 (1101)
Q Consensus       487 ~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~--Y~C~a~n~~g~~~~s~~l~V~~~p~-~~~~~~~~~~~~v~~g  563 (1101)
                      ...+.......  .....+.  ...+   ...+.|.  ++..|.|..|....+..+.|..|-. +.....   ...+..|
T Consensus      1643 ~~~~~n~~dg~--~~~~tGk--~~~v---t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS---~~~aavn 1712 (2740)
T TIGR00864      1643 NAILDNEPDGP--AFAGSGK--GAKL---NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQAS---DNPAAVN 1712 (2740)
T ss_pred             EEecCCCCCCc--cccccCc--eeEE---ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEecc---CCcccCC
Confidence            65111000000  0011111  1222   2234454  5667889999988887777765321 111111   1144568


Q ss_pred             CEEEEEEEEeecCCCeeEEEECCeecC--CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         564 EIIKLKVSMAGMPPPTARWLHNGEPLT--SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       564 ~~~~l~c~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      .++++.....+.+...+.|...+..-.  ....+         +.+   ......|..++.|.|..|+...+..+.|..+
T Consensus      1713 ~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~---------tHt---f~~~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864      1713 ALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM---------SHS---FPSAGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred             CeEEEEEEecCCCCcEEEEEECCCCCcccCCCce---------EEE---ccCCceEEEEEEEEccccccceeEEEEEEec
Confidence            888888877788888999997653211  11111         111   2222356677788999998887877777754


Q ss_pred             C
Q psy8139         642 P  642 (1101)
Q Consensus       642 P  642 (1101)
                      .
T Consensus      1781 V 1781 (2740)
T TIGR00864      1781 I 1781 (2740)
T ss_pred             c
Confidence            3

Note: this model has been restricted to the amino half because for technical reasons.

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=96.56  E-value=0.0023  Score=40.92  Aligned_cols=18  Identities=44%  Similarity=0.774  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8139          13 AKTILIQTLWRSKLAMRR   30 (1101)
Q Consensus        13 ~aa~~iQ~~~Rg~~~r~~   30 (1101)
                      ++|+.||+.|||++.|++
T Consensus         4 ~aa~~IQa~~Rg~~~r~~   21 (26)
T smart00015        4 RAAIIIQAAWRGYLARKR   21 (26)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            444444444444444443

Calmodulin-binding motif.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.56  E-value=0.016  Score=51.71  Aligned_cols=74  Identities=19%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             EEEEEEEEeecC---CCeeEEEECCee----c-----------CC--CCceEEEeec-ceEEEEEccCCCCCCeEEEEEE
Q psy8139         565 IIKLKVSMAGMP---PPTARWLHNGEP----L-----------TS--GGRYEITHTD-RYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       565 ~~~l~c~~~g~p---~~~v~W~~~g~~----l-----------~~--~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +++|.|.....+   ...|.|++....    +           ..  ..+..+.... ...+|.|.+++..|+|.|.|.+
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v   81 (98)
T cd05718           2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF   81 (98)
T ss_pred             CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence            578999887654   447999984321    0           01  1111221111 4678999999999999999998


Q ss_pred             Ee-CCCCceeEEEEEE
Q psy8139         624 VN-SLGEDVASFLVTV  638 (1101)
Q Consensus       624 ~N-~~G~~~~s~~l~v  638 (1101)
                      .+ ..|.......|.|
T Consensus        82 ~~~~~g~~~~~~~l~V   97 (98)
T cd05718          82 ATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EeCCCCcEEEEEEEEe
Confidence            75 5666666666655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.54  E-value=0.019  Score=53.00  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=49.0

Q ss_pred             CeEEeeCCEEEEEEEEeecC----CCeeEEEEC----Cee--c---C------CCCce----EEE--eecceEEEEEccC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP----PPTARWLHN----GEP--L---T------SGGRY----EIT--HTDRYLNLRISDA  611 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~----g~~--l---~------~~~~~----~~~--~~~~~~sl~i~~l  611 (1101)
                      .+.+..|++++|.|.....+    ...+.|++.    +.+  +   .      ...++    .+.  ...+..+|.|.++
T Consensus         7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v   86 (115)
T cd05880           7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL   86 (115)
T ss_pred             eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence            45788899999999987543    246999741    111  1   0      01122    111  1234678999999


Q ss_pred             CCCCCeEEEEEEEeCCCC
Q psy8139         612 RRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       612 ~~~~~y~y~c~A~N~~G~  629 (1101)
                      ++.|+|.|.|.+.|..+.
T Consensus        87 ~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          87 QPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ChhhCEEEEEEEEeCCCC
Confidence            999999999999987764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.51  E-value=0.013  Score=54.42  Aligned_cols=69  Identities=14%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             CeEEeeCCEEEEEEEEee--cCCCeeEEEEC--Ceec------C-----------CCCceEEEeec--ceEEEEEccCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAG--MPPPTARWLHN--GEPL------T-----------SGGRYEITHTD--RYLNLRISDARR  613 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g--~p~~~v~W~~~--g~~l------~-----------~~~~~~~~~~~--~~~sl~i~~l~~  613 (1101)
                      .+.+..|++++|.|...+  .+.+.+.|++.  +...      .           ...++.+....  ....|+|.++++
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            446778999999999987  67889999973  2111      0           12345554444  467899999999


Q ss_pred             CCCeEEEEEEEe
Q psy8139         614 ADRGEYQAHGVN  625 (1101)
Q Consensus       614 ~~~y~y~c~A~N  625 (1101)
                      .|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>TIGR00864 PCC polycystin cation channel protein

Probab=96.49  E-value=3.1  Score=57.21  Aligned_cols=191  Identities=15%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec-Ccee-EEccCCeEEEEEEEeccCCCeEEEEECCEEee
Q psy8139         417 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA-LHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF  494 (1101)
Q Consensus       417 d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~-p~~~-~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~  494 (1101)
                      ..|..++.|.|..|....     .+.+.|.... ....|... +... .+..|..+.|.-.+.......+.|..++....
T Consensus      1754 G~y~VtVta~N~vss~~~-----s~~V~VqepV-~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~ 1827 (2740)
T TIGR00864      1754 GLHLVTMKAFNELGSANA-----SEEVDVQEPI-SGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK 1827 (2740)
T ss_pred             ceEEEEEEEEccccccce-----eEEEEEEecc-ccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc
Confidence            367788889998875432     2444443222 22223211 1111 34456667666654333334677876543211


Q ss_pred             cCCcEEEEecCCeeEEEEeecCCCCCEEEE--EEEEeCCCceEEEEEEeeccCCcc-ccCCCCCCCeEEeeCCEEEEEEE
Q psy8139         495 SSRRQRIVTDNDISTLIIHQAALMDEGEIK--CTATNRAGHSITKARLRLEAPPTI-RLPKQYEDGLLFEMGEIIKLKVS  571 (1101)
Q Consensus       495 ~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~--C~a~n~~g~~~~s~~l~V~~~p~~-~~~~~~~~~~~v~~g~~~~l~c~  571 (1101)
                      .         +.  ..   ..+..+.|.|+  ..|.|..+....+..+.|+.+..- .....   ...+..|+.+++.+.
T Consensus      1828 ~---------gk--~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as---~~~~~~n~~v~fsa~ 1890 (2740)
T TIGR00864      1828 M---------GK--HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKAS---KKIAAIGEKVEFQIL 1890 (2740)
T ss_pred             c---------cc--ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecc---cccccCCCEEEEEEE
Confidence            1         11  11   13455677775  468899888888888888876532 22211   125567999999999


Q ss_pred             EeecCCCeeEEEECCee-cCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         572 MAGMPPPTARWLHNGEP-LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       572 ~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      ....+...+.|...+.. ...       ..+  .. ..+.-..-..|.+++.|.|..+.......+.|..
T Consensus      1891 l~~GS~Vtf~w~fGdgs~~~~-------t~~--~t-~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864      1891 LAAGSAVNFRLQIGGAAPEVL-------QPG--PR-FSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred             ecCCCceEEEEEeCCCCceee-------cCC--Ce-EEeecCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence            88888889999875422 111       001  11 1122233457889999999999987777776653

Note: this model has been restricted to the amino half because for technical reasons.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.48  E-value=0.02  Score=50.43  Aligned_cols=74  Identities=15%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             eEEEEEEEeccC-CCeEEEEECC----EEee-------------cCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         469 KVEFTVQVEGIP-TPKVSWYKDG----FEIF-------------SSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       469 ~v~L~C~~~g~p-~~~v~W~~~g----~~~~-------------~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +++|.|.....+ ...|+|.+..    ..+.             ..++..+. ......+|.|.++...|+|.|.|.+.+
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            578899876433 2368998742    1111             01233332 123356999999999999999999765


Q ss_pred             -CCCceEEEEEEee
Q psy8139         530 -RAGHSITKARLRL  542 (1101)
Q Consensus       530 -~~g~~~~s~~l~V  542 (1101)
                       ..|...++..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence             5677777777766

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.46  E-value=0.025  Score=48.64  Aligned_cols=63  Identities=19%  Similarity=0.367  Sum_probs=41.7

Q ss_pred             EEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCe------eEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         470 VEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDI------STLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       470 v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~------~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ++|.|.+.|. |.+.|+|+++|..+..... .....+..      +.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            5799999774 8889999999988765432 23223221      23334334455668999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.44  E-value=1.7  Score=46.64  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE-Ee------cCCCCCCccEEEEec--C--CeEEEEeecCCCCCCc
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT-VT------DRPLPPGKAKVVMTL--G--KSVTLSWSEPEDDGGC  671 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~-v~------~~P~~P~~~~~~~~~--~--~sv~lsW~~p~~~~g~  671 (1101)
                      -..+.+.++.++..|..++.+.|.... .....+. +.      .-|.-|.++.+....  -  ++++|.|.+..+..  
T Consensus       127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~--  203 (300)
T PF10179_consen  127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS--  203 (300)
T ss_pred             eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC--
Confidence            457889999999999999987775443 2333333 22      235667777765444  2  79999999643321  


Q ss_pred             ccceeEEEEEcC
Q psy8139         672 KIGNYIVEYFRP  683 (1101)
Q Consensus       672 ~i~~Y~v~~~~~  683 (1101)
                        ..|=|....+
T Consensus       204 --~kYCvy~~~~  213 (300)
T PF10179_consen  204 --IKYCVYRREE  213 (300)
T ss_pred             --ceEEEEEEEe
Confidence              3455554433

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.44  E-value=0.013  Score=52.30  Aligned_cols=76  Identities=22%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             CCeEEEEEEEeccCCC-eEEEEECCE----Eee---c----------CCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         467 DEKVEFTVQVEGIPTP-KVSWYKDGF----EIF---S----------SRRQRIV-TDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~-~v~W~~~g~----~~~---~----------~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      |++++|.|........ .+.|++...    .+.   .          ..+..+. ...+..+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            6789999986544332 589998421    111   0          0111221 1234568999999999999999997


Q ss_pred             Ee-CCCceEEEEEEee
Q psy8139         528 TN-RAGHSITKARLRL  542 (1101)
Q Consensus       528 ~n-~~g~~~~s~~l~V  542 (1101)
                      .+ ..|.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            75 4555555556655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG4802|consensus

Probab=96.43  E-value=0.032  Score=59.92  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=72.7

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCc---eeEEEEEEec---CCCCCCccEEEEecCCeEEEEeecCCCCCCccccee
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGED---VASFLVTVTD---RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNY  676 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~---~~s~~l~v~~---~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y  676 (1101)
                      .....++++.|+.-|.|++.|.|..|..   +++..+....   +|.+|.++.+..+..+.                   
T Consensus       208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG-------------------  268 (516)
T KOG4802|consen  208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDG-------------------  268 (516)
T ss_pred             CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecc-------------------
Confidence            3467888999999999999999988753   3333333332   34555666655432221                   


Q ss_pred             EEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCC
Q psy8139         677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLE  753 (1101)
Q Consensus       677 ~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~  753 (1101)
                                              .-...|.|.|+..  +-||..|.|.|...-..   ....-....-++..+.|++|.
T Consensus       269 ------------------------~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~  322 (516)
T KOG4802|consen  269 ------------------------RYMLKVVWCPSKS--DLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELL  322 (516)
T ss_pred             ------------------------eEEEEEEeCCCCC--CCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcC
Confidence                                    0012344444322  23556666665432210   000000000112233499999


Q ss_pred             CCceEEEEEEEEcCCccCCCC
Q psy8139         754 PGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       754 p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      |+..|.+.|.|....|.+.--
T Consensus       323 Pns~Y~VevqAi~y~g~~rLk  343 (516)
T KOG4802|consen  323 PNSSYYVEVQAISYLGSRRLK  343 (516)
T ss_pred             CCCeEEEEEEEEEeccCcccc
Confidence            999999999999999987653

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.41  E-value=0.016  Score=52.80  Aligned_cols=67  Identities=18%  Similarity=0.325  Sum_probs=46.1

Q ss_pred             EEccCCeEEEEEEEecc-CCCeEEEEECCEE--------e---e-----------cCCcEEEE--ecCCeeEEEEeecCC
Q psy8139         463 TALEDEKVEFTVQVEGI-PTPKVSWYKDGFE--------I---F-----------SSRRQRIV--TDNDISTLIIHQAAL  517 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~--------~---~-----------~~~~~~~~--~~~~~~~l~I~~l~~  517 (1101)
                      .+..|++++|.|...+. ....+.|++....        +   .           ...++.+.  .......|+|.++.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            47789999999998764 3457999983210        0   0           01234332  223456799999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.38  E-value=0.013  Score=52.36  Aligned_cols=68  Identities=18%  Similarity=0.274  Sum_probs=49.1

Q ss_pred             EEeeCCEEEEEEEEeec--CCCeeEEEECC---eec-----------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGM--PPPTARWLHNG---EPL-----------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~--p~~~v~W~~~g---~~l-----------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+..|++++|.|...+.  ....+.|++..   .+.           ....++.........+|+|.++++.|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            45679999999998765  56679998621   111           012355555555677899999999999999999


Q ss_pred             EEeC
Q psy8139         623 GVNS  626 (1101)
Q Consensus       623 A~N~  626 (1101)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8653

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.38  E-value=0.018  Score=53.62  Aligned_cols=73  Identities=16%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             cCceeEEccCCeEEEEEEEeccC------CCeEEEEECCE------Eee--c---------CCcEEEE--ecCCeeEEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP------TPKVSWYKDGF------EIF--S---------SRRQRIV--TDNDISTLII  512 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p------~~~v~W~~~g~------~~~--~---------~~~~~~~--~~~~~~~l~I  512 (1101)
                      .|..+.+..|++++|.|.....+      ...+.|++...      .+.  .         .+++.+.  ...+..+|+|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46677899999999999875332      34689998421      110  0         1244442  1344568999


Q ss_pred             eecCCCCCEEEEEEEEeC
Q psy8139         513 HQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+++.+|+|.|.|.....
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999987664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.35  E-value=0.024  Score=48.66  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      +.|.|.+.+ .|.+.|+|++++..+...........++    .+.|.+......+...|+|.|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            579999966 4888999999998876432111111121    113333333334567999999987654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.28  E-value=0.019  Score=51.30  Aligned_cols=70  Identities=20%  Similarity=0.171  Sum_probs=49.3

Q ss_pred             eEEccCCeEEEEEEEec-cCCCeEEEEECCE-----Ee--------ecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEG-IPTPKVSWYKDGF-----EI--------FSSRRQRIVT--DNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~-----~~--------~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      +.+..|++++|.|.... .+...+.|++...     .+        ....++.+..  ..+..+|+|.++..+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            35778999999998765 3456789998531     11        1123444432  2456689999999999999999


Q ss_pred             EEEeCC
Q psy8139         526 TATNRA  531 (1101)
Q Consensus       526 ~a~n~~  531 (1101)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00060 FN3 Fibronectin type 3 domain

Probab=96.23  E-value=0.016  Score=48.91  Aligned_cols=68  Identities=34%  Similarity=0.618  Sum_probs=45.4

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCC---ceEEcCccccccceEEEcCccCCccEEEEEEEEecCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG  430 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~---~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G  430 (1101)
                      .....++.|+|.+|...++   .+|.+.+......   .|...... .....+.|.+|.+++.|.+++.|.+..|
T Consensus        11 ~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~~~g   81 (83)
T smart00060       11 DVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVNGAG   81 (83)
T ss_pred             EEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence            3455699999998743321   5677766543222   24333222 1246899999999999999999998755

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.22  E-value=0.024  Score=50.10  Aligned_cols=72  Identities=11%  Similarity=0.061  Sum_probs=46.1

Q ss_pred             eEEccCCeEEEEEEEec-cCCCe--EEEEECCEEeecCCcEEE--EecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         462 TTALEDEKVEFTVQVEG-IPTPK--VSWYKDGFEIFSSRRQRI--VTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g-~p~~~--v~W~~~g~~~~~~~~~~~--~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ..+.+|..++|.|.+.| .|.+.  |.|++++..+........  .......++++.--..+|.-.|+|.|.+..+.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            34678999999999876 56665  799999988854321110  00112345666544334444899999987643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.20  E-value=0.019  Score=50.62  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCC------------------CCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS------------------GGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~------------------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      |++++|.|.....+...+.|++.......                  ..+..+.   .+.+|.|.++++.|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccCCchhcEEEEEEEE
Confidence            67889999888777779999985433210                  1112221   24789999999999999999998


Q ss_pred             eCCCC
Q psy8139         625 NSLGE  629 (1101)
Q Consensus       625 N~~G~  629 (1101)
                      +..|.
T Consensus        78 ~~~~~   82 (92)
T cd05741          78 STNGV   82 (92)
T ss_pred             cCCCc
Confidence            87654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PHA03376 BARF1; Provisional

Probab=96.20  E-value=0.082  Score=51.12  Aligned_cols=78  Identities=14%  Similarity=0.110  Sum_probs=47.4

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      .+.+|.|.++++.|.|.|+|........+...   .-+++      ..|-.+...........-+...+.|...|.|.|.
T Consensus        85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~---ehLt~------V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~  155 (221)
T PHA03376         85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ---EHLSV------VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH  155 (221)
T ss_pred             CeEEEEEEeeeecCCceEEEEEEcCCCceeee---eeeee------eecceEEEEeccccCCCCCeeEEEEecCCcCCch
Confidence            44679999999999999999998754332211   01111      0111111111111112245678999999999999


Q ss_pred             EEEEECC
Q psy8139         484 VSWYKDG  490 (1101)
Q Consensus       484 v~W~~~g  490 (1101)
                      ++|..+.
T Consensus       156 ~~Wle~~  162 (221)
T PHA03376        156 VQWLMPE  162 (221)
T ss_pred             heecccc
Confidence            9998754

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.20  E-value=0.014  Score=51.75  Aligned_cols=68  Identities=24%  Similarity=0.356  Sum_probs=45.4

Q ss_pred             ccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCc-EEEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         465 LEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRR-QRIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~-~~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      ..|..++|.|.+.|. |. +.++|+++|..+..... ...... ++    .+.|.+......+.+.|+|.|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999997 53 58999999988765432 111111 11    12344444444489999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.15  E-value=0.041  Score=46.63  Aligned_cols=62  Identities=16%  Similarity=0.272  Sum_probs=41.7

Q ss_pred             EEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         470 VEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       470 v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +.|.|.+. +.|.+.|+|++++..+...........+   ..++|.|..-...|...|+|.|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            57899875 4688899999999988654221111112   23466665555556668999999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.06  E-value=0.02  Score=50.98  Aligned_cols=69  Identities=19%  Similarity=0.338  Sum_probs=48.0

Q ss_pred             eCCEEEEEEEEee-cCCCeeEEEECCeecC--C-----------CCce--EEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         562 MGEIIKLKVSMAG-MPPPTARWLHNGEPLT--S-----------GGRY--EITHTDRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       562 ~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~--~-----------~~~~--~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .|++++|.|.... .....+.|++....+.  .           .+.+  .+.......+|.|.+++..|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            4889999998765 5556899987532211  0           1111  122234468899999999999999999998


Q ss_pred             CCCCc
Q psy8139         626 SLGED  630 (1101)
Q Consensus       626 ~~G~~  630 (1101)
                      ..|..
T Consensus        83 ~~~~~   87 (97)
T cd05775          83 KNGVT   87 (97)
T ss_pred             CCCCe
Confidence            87654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.02  E-value=3  Score=45.71  Aligned_cols=230  Identities=15%  Similarity=0.161  Sum_probs=111.7

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--  482 (1101)
                      +-.+.|.++.-.|+|.|++...+.......   ...+++.+.   -.||.+...+  ..++.|+...-.|.+...=++  
T Consensus       206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~---e~~~~~~v~---~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~S  277 (490)
T PHA03271        206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLL---DKHIYIRVC---QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGS  277 (490)
T ss_pred             eeeEEEEEeecccceEEEEEecCCCCCccc---cceEEEEEE---ecCCCccccC--CccccCCCceEEEEeeeecCCCc
Confidence            357899999999999887776664433221   122333333   2344443332  247889999999988764333  


Q ss_pred             -eEEEEECCEEeecCCcEEEE---ecC--C---eeEEEEeecCCCCCEEEEEEEEeCCCceEEE----EEEeeccCCccc
Q psy8139         483 -KVSWYKDGFEIFSSRRQRIV---TDN--D---ISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEAPPTIR  549 (1101)
Q Consensus       483 -~v~W~~~g~~~~~~~~~~~~---~~~--~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s----~~l~V~~~p~~~  549 (1101)
                       .++|+.+|..+.........   ..+  +   .+++++.+......=..+|.+.=..+.....    +.-.|..+|.+.
T Consensus       278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS  357 (490)
T PHA03271        278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS  357 (490)
T ss_pred             eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence             58999999877543211111   111  1   1233333321122226899876443322222    222333334332


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCeecCCCCc--eE-EEeecceEEEEEcc-CCCC---CCeEEEE
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGR--YE-ITHTDRYLNLRISD-ARRA---DRGEYQA  621 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~--~~-~~~~~~~~sl~i~~-l~~~---~~y~y~c  621 (1101)
                              +....|..   .|.+.--| ...+.|..++.+......  .. -.-.+..+...|.. +..+   ..-.|+|
T Consensus       358 --------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTC  426 (490)
T PHA03271        358 --------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTC  426 (490)
T ss_pred             --------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEE
Confidence                    23333332   34443222 568999987665432100  00 00011112223333 2222   3467999


Q ss_pred             EEEe-CCCCceeEEEEEEecCCCCCCccEEEEe
Q psy8139         622 HGVN-SLGEDVASFLVTVTDRPLPPGKAKVVMT  653 (1101)
Q Consensus       622 ~A~N-~~G~~~~s~~l~v~~~P~~P~~~~~~~~  653 (1101)
                      .+.. +.+-......-.....|..+..+.+..+
T Consensus       427 rL~GYP~~lP~Fe~t~tYDASP~a~~~PmVisI  459 (490)
T PHA03271        427 RLIGYPFDEDKFQASEYYDATPSARGSPMVLTI  459 (490)
T ss_pred             EEeecCCCCCccceeeeecCCCccCCCcEEEEe
Confidence            8853 2222223333334445655555554433

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.01  E-value=0.038  Score=49.53  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             EEEEEEEEeecC---CCeeEEEECCee-----c---C--------C--CCceEEEe--ecceEEEEEccCCCCCCeEEEE
Q psy8139         565 IIKLKVSMAGMP---PPTARWLHNGEP-----L---T--------S--GGRYEITH--TDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       565 ~~~l~c~~~g~p---~~~v~W~~~g~~-----l---~--------~--~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      +++|.|.....+   ...|.|++....     +   .        .  .++..+..  .....+|+|.+++..|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            467888876544   347888873211     0   0        0  02223322  2346789999999999999999


Q ss_pred             EEEe-CCCCceeEEEEEE
Q psy8139         622 HGVN-SLGEDVASFLVTV  638 (1101)
Q Consensus       622 ~A~N-~~G~~~~s~~l~v  638 (1101)
                      .+.| +.|..+....|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6666655666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.00  E-value=0.019  Score=51.83  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEE-------ee---c------------CCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFE-------IF---S------------SRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~-------~~---~------------~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      +..|++++|.|.........+.|++....       +.   .            ..++..........|+|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            56899999999886655567999983311       11   0            11233333345668999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.00  E-value=0.049  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             CeEEeeCCEEEEEEEEeecC----CCeeEEEECCe------ec---------C-CCCce----EEEe--ecceEEEEEcc
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP----PPTARWLHNGE------PL---------T-SGGRY----EITH--TDRYLNLRISD  610 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~g~------~l---------~-~~~~~----~~~~--~~~~~sl~i~~  610 (1101)
                      .+.+..|+.++|.|......    ...+.|++...      .+         . ..+++    .+..  ..+..+|+|.+
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN   86 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence            34678899999999886543    25699975211      00         0 01111    1211  22357899999


Q ss_pred             CCCCCCeEEEEEEEeCCCC
Q psy8139         611 ARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +++.|+|.|.|.+.|..+.
T Consensus        87 v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          87 LQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             CCcccCEEEEEEEEeCCCC
Confidence            9999999999999987653

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.96  E-value=0.037  Score=47.51  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=40.4

Q ss_pred             EEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCC-----eeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      ++|.|.+.| .|.+.|+|+++|..+............+     .+.|.+..-...+...|+|.+.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            579999876 6778999999999875432222222111     12445544345566789999988653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd00098 IgC Immunoglobulin Constant domain

Probab=95.90  E-value=0.031  Score=49.56  Aligned_cols=68  Identities=24%  Similarity=0.316  Sum_probs=46.3

Q ss_pred             eCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCc-eEEEeec--c---eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         562 MGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGR-YEITHTD--R---YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~-~~~~~~~--~---~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .|..+.|.|.+.|. | .+.++|.++|..+..... .......  .   .+.|.+......+.+.|+|.|.+....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            47789999999997 5 478999999998875432 1111111  1   233455554445899999999887553

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=95.89  E-value=0.08  Score=47.09  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEe-CCCCceeEEEEEE
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVN-SLGEDVASFLVTV  638 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N-~~G~~~~s~~l~v  638 (1101)
                      .+.++.|.+|+..|.|.|+|.+.| +.|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            457899999999999999999999 6787777777766

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=95.88  E-value=0.086  Score=45.25  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             EEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecc------eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDR------YLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       566 ~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~------~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      +.|.|.+.|. |.+.|+|+++|..+..... .....++      ...+.+......+...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            5689999875 8899999999998865432 2222222      1334444455667789999999876543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>KOG4367|consensus

Probab=95.87  E-value=0.012  Score=62.82  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             CCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       360 ~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ..+++++|+|..|..+ +.++.||.++.....++.+..+..  ..++-.+|.+|.-++.|.-+|.|.|..|.+..|
T Consensus       450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys  522 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS  522 (699)
T ss_pred             ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCccc
Confidence            5678999999966444 568999999998876666665533  466789999999999999999999999998776

>PTZ00014 myosin-A; Provisional

Probab=95.84  E-value=0.02  Score=70.75  Aligned_cols=42  Identities=14%  Similarity=0.130  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          39 RSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQ   84 (1101)
Q Consensus        39 ~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~   84 (1101)
                      ...++.||++||||+    +|++|++.+.+++.||+.+|+++.++.
T Consensus       777 ~~~~~~iq~~~r~~~----~r~~~~~~~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        777 EPLVSVLEALILKIK----KKRKVRKNIKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467889999999999    899999999999999999999988653

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=95.82  E-value=0.066  Score=45.89  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=41.0

Q ss_pred             EEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDR----YLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       566 ~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      +.|.|.+.+. |.+.|+|+++|..+...........++    .+.+.+......+...|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            4689999865 888999999999886432111111111    2234443333445679999999876654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd00096 Ig Immunoglobulin domain

Probab=95.82  E-value=0.036  Score=45.14  Aligned_cols=62  Identities=35%  Similarity=0.516  Sum_probs=45.4

Q ss_pred             EEEEEEEeccCCCeEEEEECCEEeecCCcE----EEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ----RIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~----~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +.|.|.+.+.+.+.+.|++++.........    ..........|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368999988788899999988765433211    11112334589999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=95.76  E-value=0.047  Score=46.25  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=43.7

Q ss_pred             EEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      +.|.|.+.| .|.+.|+|++++.++...........+   ..++|.|..-...|.-.|+|.|.|..-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            568999886 478899999999998754221111111   245677766666777889999998753

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.67  E-value=3.3  Score=45.74  Aligned_cols=193  Identities=21%  Similarity=0.240  Sum_probs=104.5

Q ss_pred             eeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEE
Q psy8139         364 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       364 sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      ...+-|..+..+|..+ .-|.++              .......|+|..|+..++|.|.=...+..+....+   ..+++
T Consensus       155 ~~~~~~a~ga~Pg~~P-~~y~~~--------------g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~---~~VtV  216 (466)
T PHA03270        155 DPRVRWAEGAGPGARP-RLYSVE--------------GTFPTQRLVIQELTLATQGMYYWARGPADRPHRYG---TWTRV  216 (466)
T ss_pred             CcccccccCCCCCCCC-cccccc--------------CCCCcceEEEEEcccccceEEEEEEecCCCceeee---eEEEE
Confidence            3467777765555444 244442              11334579999999999999999987766643322   22444


Q ss_pred             EeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC---eEEEEECCEEeecCCcEE---EEecCC---eeEEEEee
Q psy8139         444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---KVSWYKDGFEIFSSRRQR---IVTDND---ISTLIIHQ  514 (1101)
Q Consensus       444 ~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~~~~~~~~~---~~~~~~---~~~l~I~~  514 (1101)
                      ...    .+|.+...+  ..++.|+...-.|.+..+=++   .+.|+.|+..+.......   ....++   .+++++..
T Consensus       217 ~~y----r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea  290 (466)
T PHA03270        217 RMF----RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEA  290 (466)
T ss_pred             EEe----cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccc
Confidence            432    455544333  347889999999988654333   589999999886322111   111122   12333222


Q ss_pred             cCCC-CCEEEEEEEEeCCCce-EE----EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCe
Q psy8139         515 AALM-DEGEIKCTATNRAGHS-IT----KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGE  587 (1101)
Q Consensus       515 l~~~-d~g~Y~C~a~n~~g~~-~~----s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~  587 (1101)
                      .... ..=..+|.+.=..+.. .+    ++.-.|..+|.+.+        .+..|.   ..|++.=-| ...+.|..++.
T Consensus       291 ~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv--------~F~dG~---AVCtA~CVPegV~l~W~V~D~  359 (466)
T PHA03270        291 RAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM--------EFGGDE---AVCTAACVPEGVTLAWLLGAD  359 (466)
T ss_pred             cccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE--------EEeCCE---EEEeccccCCCCEEEEEecCC
Confidence            2111 1126899876332222 21    22333444454421        223333   235444322 56899998766


Q ss_pred             ecCC
Q psy8139         588 PLTS  591 (1101)
Q Consensus       588 ~l~~  591 (1101)
                      +...
T Consensus       360 ~~pa  363 (466)
T PHA03270        360 PAPA  363 (466)
T ss_pred             CCCC
Confidence            5543

>KOG0165|consensus

Probab=95.62  E-value=4.4  Score=47.82  Aligned_cols=110  Identities=30%  Similarity=0.458  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHH-------------------------HH
Q psy8139           6 SDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIR--SKTIVIQKYFRGYLLMR-------------------------KE   58 (1101)
Q Consensus         6 ~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~--~aa~~IQ~~~Rg~~~r~-------------------------~~   58 (1101)
                      -+++..+.+++.||..|+.-+--+.....+-.+.  .++.++|+..|+|..+.                         .-
T Consensus       340 ~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~~V~l~L~~~~sgl~T~~~~~~~~Vg~~~  419 (1023)
T KOG0165|consen  340 TRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIRQVSLRLKSAASGLITQKYIRAREVGKHE  419 (1023)
T ss_pred             hHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccceeEEEehhhhccccHHHHHHHHhhcccc
Confidence            3567788999999999999888887776655555  77889999999998430                         00


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          59 RQEYLAMKSSAVKIQEWYRNLQCMRQARQQ--YLALKHATLKQREEFLKLKHATIAIQTLYKAKL  121 (1101)
Q Consensus        59 r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~  121 (1101)
                      +..+-...+.....|+..+|+..++.+...  +....      .....-+..-|+++|..+.+.+
T Consensus       420 ~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~~~~~~~~------~~~~~~~~l~aL~~~~~y~~~l  478 (1023)
T KOG0165|consen  420 RIKYSEFKKSTVILQALVRGWLVRKRVEQRAKIRLLH------FTAAAYYHLNALRIQRAYKLYL  478 (1023)
T ss_pred             cchhHHHHHHHHHHHhcccceeechhhhhcCCHHHHH------HHHHHHHHHHHHhhhhhhhHHH
Confidence            111222235556667788888777654222  11110      1112234455677777777554

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=95.59  E-value=0.14  Score=46.76  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=34.6

Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      +..+|.|.+++..|.|.|+|...+..........|.|.+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            467899999999999999999999888888888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.58  E-value=0.092  Score=46.30  Aligned_cols=65  Identities=15%  Similarity=0.403  Sum_probs=39.4

Q ss_pred             CCeEEEEEEEecc-CCC-eEEEEECCEEeecCCc-EEEEec--CCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         467 DEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRR-QRIVTD--NDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       467 g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~-~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ++.++|.|.+.|. |.. .++|.++|........ .....+  +.-.....-.+...+...|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            6789999999995 443 8999999964322211 111112  111122233445567889999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.58  E-value=0.12  Score=45.16  Aligned_cols=67  Identities=28%  Similarity=0.475  Sum_probs=42.1

Q ss_pred             CCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEE-EecCC----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         467 DEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRI-VTDND----ISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       467 g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~-~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |+.+.+.|.+ .|.|.+.|+|+.++..+........ ...++    .+.|.+..-...+...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999965 6789999999999877721111111 11111    234555544445677899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.58  E-value=0.057  Score=49.55  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=50.1

Q ss_pred             CeEEeeCCEEEEEEEEe-ecCCCeeEEEECCe-----ecC--------------CCCceEEEee--cceEEEEEccCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMA-GMPPPTARWLHNGE-----PLT--------------SGGRYEITHT--DRYLNLRISDARRA  614 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~sl~i~~l~~~  614 (1101)
                      .+.+..|+++.|.|... ......+.|++...     .+.              ...+..+...  ....+|.|.+|++.
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            34778899999999999 55677999997321     010              0122233332  23678999999999


Q ss_pred             CCeEEEEEEEeC
Q psy8139         615 DRGEYQAHGVNS  626 (1101)
Q Consensus       615 ~~y~y~c~A~N~  626 (1101)
                      |+|.|.|.+...
T Consensus        90 DsG~Y~C~v~~~  101 (114)
T PF07686_consen   90 DSGTYFCQVSTS  101 (114)
T ss_dssp             GEEEEEEEEEES
T ss_pred             cCEEEEEEEEEC
Confidence            999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=95.50  E-value=0.11  Score=47.14  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=33.1

Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      +..+|.|.+|++.|.|.|.|..............|.|.+
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            467899999999999999999998776677777887764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.46  E-value=0.049  Score=50.43  Aligned_cols=71  Identities=14%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E-E--ee--------------cCCcEEEEecC--CeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F-E--IF--------------SSRRQRIVTDN--DISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~-~--~~--------------~~~~~~~~~~~--~~~~l~I~~l  515 (1101)
                      |..+.+..|++++|.|...+..  ...+.|++..  . +  +.              ...++......  ....|+|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4556788999999999876433  4568999832  1 1  10              01234443332  3347999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy8139         516 ALMDEGEIKCTATN  529 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n  529 (1101)
                      .++|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.43  E-value=0.083  Score=45.31  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=42.5

Q ss_pred             EEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecc-----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDR-----YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ++|.|.+.| .|.+.++|+++|..+............+     .+.+.+..-...+...|+|.|.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            578999987 5788999999999876432222111111     234555544456678899999887554

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=95.41  E-value=0.086  Score=51.43  Aligned_cols=84  Identities=12%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             eEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecC----------C--CCceE-EEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLT----------S--GGRYE-ITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~----------~--~~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +.+.+|++++|.|... +...+.+.|.+....+.          +  ..+.. +........++|.+++..|+|.|.|..
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence            3677899999999985 65688999998533221          1  12333 233345688999999999999999987


Q ss_pred             Ee-CCC-CceeEEEEEEecC
Q psy8139         624 VN-SLG-EDVASFLVTVTDR  641 (1101)
Q Consensus       624 ~N-~~G-~~~~s~~l~v~~~  641 (1101)
                      .. +.| ..+....|+|++.
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EecCCCCCceeEEEEEEEch
Confidence            43 345 5566677777744

>PTZ00014 myosin-A; Provisional

Probab=95.32  E-value=0.041  Score=67.96  Aligned_cols=43  Identities=9%  Similarity=0.077  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         187 LKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKN  233 (1101)
Q Consensus       187 ~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~~  233 (1101)
                      ....+..||+.|||+++    |+.|++.+.+++.||+.+|++++++.
T Consensus       776 ~~~~~~~iq~~~r~~~~----r~~~~~~~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        776 WEPLVSVLEALILKIKK----KRKVRKNIKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34578889999999888    88888889999999999999998764

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=95.31  E-value=0.041  Score=50.01  Aligned_cols=43  Identities=26%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  764 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A  764 (1101)
                      ..|.|.|...++..-.....  .....++|.+|.|++.|.|+|.|
T Consensus        44 ~~Y~v~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~YCv~V~~   86 (106)
T PF09294_consen   44 LSYNVSYWKNGSNEKKKEIE--TKNSSVTLSDLKPGTNYCVSVQA   86 (106)
T ss_dssp             -EEEEEEEETTTSCEEEEEE--SSSEEEEEES--TTSEEEEEEEE
T ss_pred             eEEEEEEEeCCCccceEEEe--ecCCEEEEeCCCCCCCEEEEEEE
Confidence            46999998888762222222  56677799999999999999999

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=95.08  E-value=0.083  Score=62.11  Aligned_cols=18  Identities=11%  Similarity=-0.221  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8139         133 LKQACVSVQQRWRANLTM  150 (1101)
Q Consensus       133 ~~~aa~~iQ~~~R~~~~r  150 (1101)
                      .....+++|.+-||+..|
T Consensus       405 ~llni~klq~L~nG~~iR  422 (1054)
T COG5261         405 ALLNIVKLQILGNGYEIR  422 (1054)
T ss_pred             HHHHHHHHHHhhcceeee
Confidence            444556666666666654

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=95.07  E-value=0.15  Score=44.91  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             EEEEEEEEeecC-CCeeEEEECCe----ecC-----C--------CCceEEE-eecceEEEEEccCCCCCCeEEEEEE-E
Q psy8139         565 IIKLKVSMAGMP-PPTARWLHNGE----PLT-----S--------GGRYEIT-HTDRYLNLRISDARRADRGEYQAHG-V  624 (1101)
Q Consensus       565 ~~~l~c~~~g~p-~~~v~W~~~g~----~l~-----~--------~~~~~~~-~~~~~~sl~i~~l~~~~~y~y~c~A-~  624 (1101)
                      +++|.|.....+ ...|+|.+...    .+.     .        .++..+. ......++.|.+++..|.|.|+|.+ .
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            467889876433 45799987321    110     0        1122222 2234679999999999999999997 4


Q ss_pred             eCCCCceeEEEEEE
Q psy8139         625 NSLGEDVASFLVTV  638 (1101)
Q Consensus       625 N~~G~~~~s~~l~v  638 (1101)
                      .+.|+...+..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence            56788777777776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=95.06  E-value=0.11  Score=46.25  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             CCEEEEEEEEeecCC-CeeEEEECCee----c----C-C--------CCceEE-EeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         563 GEIIKLKVSMAGMPP-PTARWLHNGEP----L----T-S--------GGRYEI-THTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~-~~v~W~~~g~~----l----~-~--------~~~~~~-~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      |++++|.|....... ..+.|++....    +    . .        ..+..+ .......+|.|.+++..|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            577899998654432 36999874211    0    0 0        011111 12234678999999999999999997


Q ss_pred             E-eCCCCceeEEEEEE
Q psy8139         624 V-NSLGEDVASFLVTV  638 (1101)
Q Consensus       624 ~-N~~G~~~~s~~l~v  638 (1101)
                      . .+.|.......|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            5 45565555555554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=94.96  E-value=0.11  Score=47.94  Aligned_cols=69  Identities=17%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEEC--Ceec------------CCCCceEEEe--ecceEEEEEccCCCCCCeEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLHN--GEPL------------TSGGRYEITH--TDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~--g~~l------------~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+.+..|++++|.|..... ....+.|++.  +...            ...+++.+..  .....+|.|.++.+.|+|.|
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y   87 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY   87 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            4578889999999998754 4678999972  2110            0123455442  33467899999999999999


Q ss_pred             EEEEEe
Q psy8139         620 QAHGVN  625 (1101)
Q Consensus       620 ~c~A~N  625 (1101)
                      .|.+.+
T Consensus        88 ~C~~~~   93 (116)
T cd07706          88 FCALST   93 (116)
T ss_pred             EEEEEC
Confidence            999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.84  E-value=0.13  Score=45.52  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             EEeeCCEEEEEEEEee-cCCCe--eEEEECCeecCCCCceEE--EeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPPT--ARWLHNGEPLTSGGRYEI--THTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~~--v~W~~~g~~l~~~~~~~~--~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .+.+|..++|.|.+.| .|.+.  |.|++++..+........  .......++++.--..++.-.|+|.|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            4567999999999987 45555  799999988864221110  00112345666544444445999999988765

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00096 Ig Immunoglobulin domain

Probab=94.73  E-value=0.14  Score=41.46  Aligned_cols=61  Identities=34%  Similarity=0.513  Sum_probs=45.1

Q ss_pred             EEEEEEeecCCCeeEEEECCeecCCCCc----eEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPLTSGGR----YEITHTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~----~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      .|.|.+.+.+.+.+.|.+++........    ...........+.|.++...+.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            5789998888899999998776543321    111122236779999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=94.68  E-value=0.26  Score=43.45  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             eEEEEEEEecc-CCCeEEEEECCE----Eee-----------c--CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         469 KVEFTVQVEGI-PTPKVSWYKDGF----EIF-----------S--SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       469 ~v~L~C~~~g~-p~~~v~W~~~g~----~~~-----------~--~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .++|.|..... ....|+|.+...    .+.           .  .++..+... ....+|.|.|++.+|+|.|.|...+
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence            57788876532 233578887421    111           0  123333211 2346899999999999999999876


Q ss_pred             C-CCceEE
Q psy8139         530 R-AGHSIT  536 (1101)
Q Consensus       530 ~-~g~~~~  536 (1101)
                      . .|....
T Consensus        82 ~P~g~~~~   89 (96)
T cd05889          82 YPQGSWEK   89 (96)
T ss_pred             CCCCCeEE
Confidence            4 444443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00406 IGv Immunoglobulin V-Type

Probab=94.60  E-value=0.13  Score=43.81  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             eEEEEEEEeccCCC--eEEEEECCE-----Eee-------------cCCcEEEEec--CCeeEEEEeecCCCCCEEEEEE
Q psy8139         469 KVEFTVQVEGIPTP--KVSWYKDGF-----EIF-------------SSRRQRIVTD--NDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       469 ~v~L~C~~~g~p~~--~v~W~~~g~-----~~~-------------~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      +++|.|.......+  .+.|++...     .+.             ...++.+...  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36788877665543  678887321     010             1234444433  5567899999999999999996

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.58  E-value=0.13  Score=46.52  Aligned_cols=66  Identities=18%  Similarity=0.408  Sum_probs=46.0

Q ss_pred             EeeCCEEEEEEEEeecCCCeeEEEEC--C--eec------CC------------CCceEEEeecceEEEEEccCCCCCCe
Q psy8139         560 FEMGEIIKLKVSMAGMPPPTARWLHN--G--EPL------TS------------GGRYEITHTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~p~~~v~W~~~--g--~~l------~~------------~~~~~~~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      +..|+.++|.|.........+.|++-  |  ...      ..            ..++.........+|.|.++++.|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            56799999999987665667999973  2  110      00            12233333345668999999999999


Q ss_pred             EEEEEEEe
Q psy8139         618 EYQAHGVN  625 (1101)
Q Consensus       618 ~y~c~A~N  625 (1101)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=94.56  E-value=0.47  Score=43.23  Aligned_cols=67  Identities=24%  Similarity=0.460  Sum_probs=40.4

Q ss_pred             EEccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcEEEEecCCeeE------EEEeecCCCCCE-EEEEEEEeCC
Q psy8139         463 TALEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQRIVTDNDIST------LIIHQAALMDEG-EIKCTATNRA  531 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~------l~I~~l~~~d~g-~Y~C~a~n~~  531 (1101)
                      ....|..++|.|.+.|. | ...++|++||..+..... .....+...+      |.+. ....|.+ .|+|.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence            44568889999999874 4 358999999998754322 2222221112      2222 2233433 4999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=94.55  E-value=0.12  Score=46.12  Aligned_cols=69  Identities=16%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             EEeeCCEEEEEEEEee-cCCCeeEEEECCee-----c--------CCCCceEEEe--ecceEEEEEccCCCCCCeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPPTARWLHNGEP-----L--------TSGGRYEITH--TDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~-----l--------~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+..|++++|.|.... .+...+.|++....     +        ...+++.+..  .....+|.|.+++..|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5778999999998765 35678999874311     1        0123444432  23467899999999999999998


Q ss_pred             EEeCC
Q psy8139         623 GVNSL  627 (1101)
Q Consensus       623 A~N~~  627 (1101)
                      +.+..
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=94.48  E-value=0.24  Score=43.40  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             ccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcE-EEEecCCeeEEEE---eecCCCCCEEEEEEEEeC
Q psy8139         465 LEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLII---HQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I---~~l~~~d~g~Y~C~a~n~  530 (1101)
                      ..|...+|.|.+.|. | ...++|.++|..+. .... ....++ ..++.+   -.+.+++.-.|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~-d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSK-DWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECC-CCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            346667899999984 3 34689999999876 3211 122222 123332   234567777899998764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=94.48  E-value=0.35  Score=43.86  Aligned_cols=53  Identities=23%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             cceEEEEEEeCCCCCceeecc-cccCccEEEEcCCC--CCceEEEEEEEEcCCccC
Q psy8139         719 VLGYLVEHRRTGSPYWVRASP-HMVEDTELMVSGLE--PGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       719 i~~Y~V~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~--p~t~Y~~~V~A~n~~G~g  771 (1101)
                      -..|.|+|+..+...|..+.. .....+.+-|++..  +...|.+||+|.-+...|
T Consensus        50 ~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~S  105 (107)
T PF01108_consen   50 NVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQTS  105 (107)
T ss_dssp             TEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEEE
T ss_pred             CeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCccC
Confidence            568999999777778988621 22456888887755  788999999998876654

...

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.44  E-value=0.16  Score=46.23  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             EEeeCCEEEEEEEEeec-CCCeeEEEEC--Ce-ec--------CC-----------CCceEEE--eecceEEEEEccCCC
Q psy8139         559 LFEMGEIIKLKVSMAGM-PPPTARWLHN--GE-PL--------TS-----------GGRYEIT--HTDRYLNLRISDARR  613 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~--g~-~l--------~~-----------~~~~~~~--~~~~~~sl~i~~l~~  613 (1101)
                      .+.+|++++|.|...+. ....+.|++-  |. +.        ..           ..++.+.  .......|+|.++++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46779999999998764 3568999972  20 00        00           1233332  223346799999999


Q ss_pred             CCCeEEEEEEEe
Q psy8139         614 ADRGEYQAHGVN  625 (1101)
Q Consensus       614 ~~~y~y~c~A~N  625 (1101)
                      .|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.39  E-value=0.072  Score=42.27  Aligned_cols=51  Identities=22%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             ccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..|++|+|+|...+.   .+.|.+++..+....          ..+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence            579999999976532   399999985554321          134444444 789999999854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.31  E-value=0.45  Score=40.48  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=45.1

Q ss_pred             EEeeCCEEEEEEEEeecCCC--eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         559 LFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+..|++++|.|.....+.|  .+.|...+...-      .....+..+|.+..+...|+|..+|.++-.
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            46679999999999664444  999987654321      111123567889999999999999999643

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=94.28  E-value=0.38  Score=42.32  Aligned_cols=64  Identities=16%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             cCCeEEEEEEEec-cCC-CeEEEEECCEEeecCCcE-EEEecCCeeEEEE---eecCCCCCEEEEEEEEeC
Q psy8139         466 EDEKVEFTVQVEG-IPT-PKVSWYKDGFEIFSSRRQ-RIVTDNDISTLII---HQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       466 ~g~~v~L~C~~~g-~p~-~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I---~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+...+|.|.+.| .|. ..++|.++|..+...... ....+++ .++.+   -.+.+.+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~D-gty~~~s~L~v~~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQD-LSFQKFSYLNFTPEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCC-CcEEEEEEEEEECCCCCeEEEEEEeC
Confidence            3566799999998 343 478999999887543211 1111111 12221   123345666899998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>smart00407 IGc1 Immunoglobulin C-Type

Probab=94.26  E-value=0.27  Score=41.26  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=37.3

Q ss_pred             EEEEEEEecc-CC-CeEEEEECCEEeecCCcE-EEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         470 VEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQ-RIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       470 v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~-~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ++|.|.+.|. |. ..++|+++|..+...... ....+ ++    .+.|.+.....++...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999885 44 589999999874332111 11111 11    1234444445567789999987653

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=94.06  E-value=0.017  Score=63.08  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=12.0

Q ss_pred             ccccccccccccccccccCC
Q psy8139        1068 EIYHPKLMTMRSSQEDLDEA 1087 (1101)
Q Consensus      1068 ~~~~~~~~~~~~~~~~~~~~ 1087 (1101)
                      +.|-|..-|...+.+.++-.
T Consensus       123 ~~WtP~~~t~~~~~~~~~~~  142 (458)
T PF10446_consen  123 EFWTPGATTAATSSSHLDVR  142 (458)
T ss_pred             eeeccccccccccccccccc
Confidence            47778776666655554433

>PHA03269 envelope glycoprotein C; Provisional

Probab=94.02  E-value=9.8  Score=42.82  Aligned_cols=226  Identities=13%  Similarity=0.048  Sum_probs=110.7

Q ss_pred             cceEEEcCccCCccEEEEEEEEecC-CCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVV-GFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~-G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-  482 (1101)
                      ...|+|..|+..|+|.|.=...+.. |....   ...++|.+.    .+|.+...+  ..++.|+...-.|.+..+=++ 
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~---~~~VtV~~y----r~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~  358 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVIN---EHHITVMSY----KRPNITVIG--DPVLLGNPYAAYCKVNKYYPPH  358 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceee---eeEEEEEEe----cCCCccccC--CccccCCCceEEEEeeeecCCC
Confidence            3569999999999999976655422 21111   133444443    445443332  347899999999988654333 


Q ss_pred             --eEEEEECCEEeecCC---cEEEEecCCe---eEEEEeecCCCC--CEEEEEEEEeCCC-ceEE----EEEEeeccCCc
Q psy8139         483 --KVSWYKDGFEIFSSR---RQRIVTDNDI---STLIIHQAALMD--EGEIKCTATNRAG-HSIT----KARLRLEAPPT  547 (1101)
Q Consensus       483 --~v~W~~~g~~~~~~~---~~~~~~~~~~---~~l~I~~l~~~d--~g~Y~C~a~n~~g-~~~~----s~~l~V~~~p~  547 (1101)
                        .++|+.||.++....   .+....+|..   +++++..-...+  .=..+|.+.=..+ ....    ++.-.|..+|.
T Consensus       359 SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~Pt  438 (566)
T PHA03269        359 SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPN  438 (566)
T ss_pred             ceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCe
Confidence              589999998887421   1122222322   233331111111  2257998763322 2221    22233444444


Q ss_pred             cccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECCeecCCCCceEEEe-ecceEEEEEcc---CCCC-CCeEEE
Q psy8139         548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNGEPLTSGGRYEITH-TDRYLNLRISD---ARRA-DRGEYQ  620 (1101)
Q Consensus       548 ~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~~~~~~~-~~~~~sl~i~~---l~~~-~~y~y~  620 (1101)
                      +.        +.+..|.   ..|.+.--|  ...+.|..++.+...+....... .+..+-..|.+   |... ..-.|+
T Consensus       439 IS--------m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYT  507 (566)
T PHA03269        439 VS--------IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYS  507 (566)
T ss_pred             EE--------EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEE
Confidence            32        1233333   346655444  35899998776643322111110 01112233333   3322 236799


Q ss_pred             EEEEe-CCCCceeEEEEEEecCCCCCCccEE
Q psy8139         621 AHGVN-SLGEDVASFLVTVTDRPLPPGKAKV  650 (1101)
Q Consensus       621 c~A~N-~~G~~~~s~~l~v~~~P~~P~~~~~  650 (1101)
                      |.... ..+--..+..-.....|..+..+.+
T Consensus       508 CrL~GYP~~lP~Fsdt~~YDASP~a~~~PvV  538 (566)
T PHA03269        508 CHLDGYPKKFPPFSAVYTYDASSSASTFPLI  538 (566)
T ss_pred             EEEeecCCCCCccceeeeecCCCcccCCcee
Confidence            98753 2222223333333344544444433

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=93.87  E-value=0.36  Score=44.83  Aligned_cols=69  Identities=20%  Similarity=0.303  Sum_probs=46.9

Q ss_pred             CeEEeeCCEEEEEEEEeecC------CCeeEEEECCe------ec---C--------CCCceEEE--eecceEEEEEccC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP------PPTARWLHNGE------PL---T--------SGGRYEIT--HTDRYLNLRISDA  611 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p------~~~v~W~~~g~------~l---~--------~~~~~~~~--~~~~~~sl~i~~l  611 (1101)
                      .+.+..|+.++|.|......      ...+.|++...      .+   .        ..+++.+.  ...+..+|.|.++
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l   87 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA   87 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence            45788899999999865332      35689997321      11   0        01244442  2344678999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy8139         612 RRADRGEYQAHGVN  625 (1101)
Q Consensus       612 ~~~~~y~y~c~A~N  625 (1101)
                      +..|+|.|.|....
T Consensus        88 ~~~Dsg~Y~C~~~~  101 (119)
T cd05712          88 QPEDSGKYFFRVEL  101 (119)
T ss_pred             ChhhCeEEEEEEEc
Confidence            99999999998755

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=93.83  E-value=0.11  Score=46.51  Aligned_cols=68  Identities=16%  Similarity=0.265  Sum_probs=38.6

Q ss_pred             EccCCeEEEEEEEec-cC-CCeEEEEECCEEeecCCcE-E-EEecCC-e---eEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         464 ALEDEKVEFTVQVEG-IP-TPKVSWYKDGFEIFSSRRQ-R-IVTDND-I---STLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g-~p-~~~v~W~~~g~~~~~~~~~-~-~~~~~~-~---~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ...+..++|.|.+.| .| ...|+|+++|..+...... . ....++ -   +.|.+..-.-.+...|+|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            345677999999987 44 4579999999987532110 1 111122 1   122222222223568999987754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA03273 envelope glycoprotein C; Provisional

Probab=93.74  E-value=13  Score=41.87  Aligned_cols=161  Identities=18%  Similarity=0.182  Sum_probs=87.3

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC---
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---  482 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~---  482 (1101)
                      ..|+|..|+..++|.|.-...+..|.....   ..++|...    .+|.+...+  ..++.|+...-.|.+...=++   
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~---~~VtV~~y----r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv  268 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNS---TSVTVSTY----NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSV  268 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeee---eEEEEEEe----cCCcccccC--CccccCCCceEEEEeeeecCCCce
Confidence            349999999999999986655554432211   22333322    455544333  347899999999988654333   


Q ss_pred             eEEEEECCEEeecCC----cEEEEecCC---eeEEEEeecCC-CCCEEEEEEEEeCCCc-eEE----EEEEeeccCCccc
Q psy8139         483 KVSWYKDGFEIFSSR----RQRIVTDND---ISTLIIHQAAL-MDEGEIKCTATNRAGH-SIT----KARLRLEAPPTIR  549 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~----~~~~~~~~~---~~~l~I~~l~~-~d~g~Y~C~a~n~~g~-~~~----s~~l~V~~~p~~~  549 (1101)
                      .+.|+.||.++....    ......++.   .++|++.+... ...=..+|.+.=..+. ...    ++.-.|..+|.+.
T Consensus       269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is  348 (486)
T PHA03273        269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS  348 (486)
T ss_pred             EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE
Confidence            589999999887221    111122222   12333333221 1222689987633222 211    1223344444432


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECC
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNG  586 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g  586 (1101)
                              +.+..|.   ..|.+.=-|  ...+.|..++
T Consensus       349 --------~~F~~G~---AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        349 --------VTVEDGD---AVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             --------EEEeCCE---EEEecccccCCCeeEEEEccC
Confidence                    1233333   346665444  4789998766

>smart00407 IGc1 Immunoglobulin C-Type

Probab=93.41  E-value=0.62  Score=39.01  Aligned_cols=62  Identities=23%  Similarity=0.328  Sum_probs=38.5

Q ss_pred             EEEEEEEeec-C-CCeeEEEECCeecCCCCce-EEEeecc-----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         566 IKLKVSMAGM-P-PPTARWLHNGEPLTSGGRY-EITHTDR-----YLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       566 ~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~-~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      ++|.|.+.|. | .+.+.|+++|.++..+... .....++     .+.|.+......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5799999986 4 4699999999875433211 1111111     2334454445667789999987653

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=93.38  E-value=0.75  Score=41.89  Aligned_cols=67  Identities=19%  Similarity=0.328  Sum_probs=40.6

Q ss_pred             eeCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEeecc------eEEEEEccCCCCCCe-EEEEEEEeCCCC
Q psy8139         561 EMGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITHTDR------YLNLRISDARRADRG-EYQAHGVNSLGE  629 (1101)
Q Consensus       561 ~~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~~~~------~~sl~i~~l~~~~~y-~y~c~A~N~~G~  629 (1101)
                      ..|+.++|.|.+.|. | ...++|.+||..+..+.. .....++      .+.|.+. ...++.+ .|+|.+......
T Consensus        19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             CCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCC
Confidence            357778999999985 4 469999999999864321 1111111      2223333 3334434 499998775433

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=93.33  E-value=0.77  Score=40.44  Aligned_cols=66  Identities=15%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEecc-CCC-eEEEEECCEEeecCCc-EEEEecC--CeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         466 EDEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRR-QRIVTDN--DISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~-~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .|..++|.|.+.|. |.. .++|.++|..+..... .....++  .-.....-.+.+++...|+|.+....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            57889999999884 433 7899999988654311 1111111  11111122334456668999987654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=93.29  E-value=0.42  Score=42.04  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             CCEEEEEEEEeec-CC-CeeEEEECCeecCCCCce-EEEeecc--eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         563 GEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRY-EITHTDR--YLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~-~~~~~~~--~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      ++.++|.|.+.|. |. ..+.|.++|.....+... .....++  -.....-.+.+.+...|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            5678999999995 43 489999998643322111 1111111  1111122344457789999997653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA02982 hypothetical protein; Provisional

Probab=93.12  E-value=0.99  Score=44.43  Aligned_cols=119  Identities=15%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             eeEEccCCeEEEEEEEeccC-CCeEEEEECC-EEee----------c--------CCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         461 DTTALEDEKVEFTVQVEGIP-TPKVSWYKDG-FEIF----------S--------SRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g-~~~~----------~--------~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      ++....++++.|.|...... -....|..+. ..+.          .        ...+.+..++..++|+|.++.+...
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            44566789999999853322 2357788742 2221          1        1345667778889999999999999


Q ss_pred             EEEEEEEEeCCCceEE-EEEEeeccCCccccCCCCCCCeEEee-CCEEEEEEEEeecCCCeeEEEECCee
Q psy8139         521 GEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEM-GEIIKLKVSMAGMPPPTARWLHNGEP  588 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~~~~~~~~~~~~v~~-g~~~~l~c~~~g~p~~~v~W~~~g~~  588 (1101)
                      |.|+|.+....+.... .--|.|+....+         ..... .....+.|-+-....+...|..+|..
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~---------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKEDIL---------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecceEE---------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999999987665443 223333211110         01112 33456778776655544488877754

>KOG1480|consensus

Probab=93.11  E-value=0.067  Score=62.39  Aligned_cols=173  Identities=16%  Similarity=0.253  Sum_probs=99.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCee-------EEEEeecCC-----
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-------TLIIHQAAL-----  517 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~-------~l~I~~l~~-----  517 (1101)
                      ..-|.|+..|.+-.+..+.++.+.|.+...+..  ...-++.-+.......+......+       ...|.....     
T Consensus        22 g~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i--~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~   99 (909)
T KOG1480|consen   22 GDLPHFTTEPKSAYIIKNKPLRLQCKANPATQI--RFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGG   99 (909)
T ss_pred             CCcceeeecCCccceecCCCccceecCCccccc--ccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccC
Confidence            355778888888899999999999998755543  222222222221111111111100       122222222     


Q ss_pred             CCCEEEEEEEEeCCCceEEE-EEEeecc-CCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCc
Q psy8139         518 MDEGEIKCTATNRAGHSITK-ARLRLEA-PPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGR  594 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~~s-~~l~V~~-~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~  594 (1101)
                      -+.+.-+|.|....|...+. +.+.+.+ ...+...|   ....|..+..+.+.|.. .+.|...+.|++++..+.+...
T Consensus       100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p---~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n  176 (909)
T KOG1480|consen  100 PEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSP---VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDAN  176 (909)
T ss_pred             ccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccCh---hhheecccccccccccCcccchhhhhhccccCCCCCcccc
Confidence            23455677787777732221 1122211 11111111   12256667777777754 5888899999999988876443


Q ss_pred             eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      .....   ...+++......+.++|+|.|.|..+..
T Consensus       177 ~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  177 VIRAS---DHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             chhhh---cCCccccchhhhhcccceeeeehhhccc
Confidence            33322   4567888888899999999999987754

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=92.92  E-value=0.32  Score=42.89  Aligned_cols=76  Identities=9%  Similarity=-0.100  Sum_probs=43.0

Q ss_pred             ccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc---eEEcCccccccceEEEcCccCCccEEEEEEEEec
Q psy8139         353 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGLEPGWRYQFRITAENV  428 (1101)
Q Consensus       353 ~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~  428 (1101)
                      .|.|..........|+|..-...+...|..|...+...-...   ..........+.+++|.||+..|+|.|+|...+.
T Consensus         4 tL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~   82 (96)
T cd05889           4 KLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTY   82 (96)
T ss_pred             EEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeC
Confidence            345554444567889998853222234444433321110011   1111111125689999999999999999999775

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>KOG3632|consensus

Probab=92.85  E-value=0.61  Score=56.05  Aligned_cols=155  Identities=19%  Similarity=0.252  Sum_probs=96.1

Q ss_pred             CCeEEEEEEEeCCCCcee-EEEEEEe-cCCCCCCccEEEEecCCeEEEEeecCCCCC-----------------------
Q psy8139         615 DRGEYQAHGVNSLGEDVA-SFLVTVT-DRPLPPGKAKVVMTLGKSVTLSWSEPEDDG-----------------------  669 (1101)
Q Consensus       615 ~~y~y~c~A~N~~G~~~~-s~~l~v~-~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~-----------------------  669 (1101)
                      ..|..++.+..+.|.... ...|.+- ..|..|.++.+.+.+.++..++|-+-..+.                       
T Consensus       643 ~s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf  722 (1335)
T KOG3632|consen  643 HSGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTF  722 (1335)
T ss_pred             CceeeehhhhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHH
Confidence            455556555566665543 2333332 467899999999999999999998532110                       


Q ss_pred             --CcccceeEEEE--------------------------Ec-CCCCCCCCcccCCCCCCCCceEEEEeeCCCC-----CC
Q psy8139         670 --GCKIGNYIVEY--------------------------FR-PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY-----DG  715 (1101)
Q Consensus       670 --g~~i~~Y~v~~--------------------------~~-~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~-----~~  715 (1101)
                        -.+-+.|.+..                          .+ ..|||.+|..+..-+..++..+.++|.||..     .|
T Consensus       723 ~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sn  802 (1335)
T KOG3632|consen  723 MRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSN  802 (1335)
T ss_pred             hccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccC
Confidence              01234444443                          11 1567777777777778899999999999744     45


Q ss_pred             CCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCC-CceEEEEEEEEcCCccCC
Q psy8139         716 GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP-GWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       716 ~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~  772 (1101)
                      |..++||-|+...   .....+.......+.+.+..|.. ...-.|.|+....-|.+-
T Consensus       803 gv~vtgYavyadg---qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv  857 (1335)
T KOG3632|consen  803 GVAVTGYAVYADG---QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV  857 (1335)
T ss_pred             ceeeeeeeeeeCC---ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence            5668999998762   22233332213334445555655 445566777666667643

>KOG4152|consensus

Probab=92.31  E-value=0.2  Score=55.57  Aligned_cols=67  Identities=22%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             EEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCcc
Q psy8139         748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCD  816 (1101)
Q Consensus       748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~  816 (1101)
                      .-..|.+|+.|+|+|.|.|..|.|++|......|.-  +.-|..|.... ..+-..+-+.|.||..++..
T Consensus       650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~--pG~P~apS~~ri~k~~eGi~l~weppt~p~sg  717 (830)
T KOG4152|consen  650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA--PGKPTAPSGARIKKTIEGISLVWEPPTKPGSG  717 (830)
T ss_pred             cccccccccceeeeeeeeeccCCCchhhheeeeecc--CCCCCCcccccccccccceeecccCCCCCCCc
Confidence            345789999999999999999999999888777653  33333444443 33334566789998887654

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=92.31  E-value=0.58  Score=43.25  Aligned_cols=69  Identities=20%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             CeEEeeCCEEEEEEEEeecC--CCeeEEEE--CC-ee--c---C-----------CCCceEEEeec--ceEEEEEccCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP--PPTARWLH--NG-EP--L---T-----------SGGRYEITHTD--RYLNLRISDARR  613 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p--~~~v~W~~--~g-~~--l---~-----------~~~~~~~~~~~--~~~sl~i~~l~~  613 (1101)
                      .+.+..|++++|.|...+..  ...+.|++  .| .+  +   .           ...++......  ....|+|.++++
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            44788899999999876543  46799986  22 11  0   0           01234443322  235799999999


Q ss_pred             CCCeEEEEEEEe
Q psy8139         614 ADRGEYQAHGVN  625 (1101)
Q Consensus       614 ~~~y~y~c~A~N  625 (1101)
                      +|++.|.|.+..
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=92.03  E-value=1.2  Score=39.36  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=37.2

Q ss_pred             CeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         468 EKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       468 ~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ....+.|.+ .|.|.+.|+|+++..... ........++.   .+.|.+......+.-.|+|.+.+..-.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            346688987 689999999998611100 00000111111   235555444445566899999987643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=91.93  E-value=0.39  Score=38.22  Aligned_cols=52  Identities=13%  Similarity=0.209  Sum_probs=35.1

Q ss_pred             EeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      ...|.+++|+|.....   .+.|.+++..+...          ...+.+.+-. .+.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCC
Confidence            3458899999976533   39999998555432          2233344444 789999999854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=91.89  E-value=1.1  Score=39.47  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=37.6

Q ss_pred             cCCeEEEEEEEec-cCC-CeEEEEECCEEeecCCc--EEEEecCCe----eEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         466 EDEKVEFTVQVEG-IPT-PKVSWYKDGFEIFSSRR--QRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       466 ~g~~v~L~C~~~g-~p~-~~v~W~~~g~~~~~~~~--~~~~~~~~~----~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      .+..++|.|.+.| .|. ..|+|.++|..+.....  ......++.    +.|.+..-.-.+...|+|.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            4566899999988 343 57899999987632211  111112221    1222221111245689999987543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.82  E-value=1.2  Score=38.58  Aligned_cols=67  Identities=19%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             CCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEe-ec----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         563 GEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITH-TD----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       563 g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~-~~----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      |..+.+.|.+. +.|.+.|+|+.++..+.......... .+    ..+.|.+..-...+...|+|.|.|..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            56899999665 67899999999987772111111111 11    1245556544445778899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=91.27  E-value=49  Score=41.55  Aligned_cols=72  Identities=13%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             CCCceEEEEeeCCCCC-CCCCcceEEEEEEeCCCC---Cc---eeec-----c-cccCccEEEE--cCC--CCCceEEEE
Q psy8139         699 LDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSP---YW---VRAS-----P-HMVEDTELMV--SGL--EPGWRYQFR  761 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~-~~~~i~~Y~V~~~~~~~~---~~---~~~~-----~-~~~~~~~~~i--~~L--~p~t~Y~~~  761 (1101)
                      .....|.|+|+.|..+ ..+....|.|.|...-.+   .+   ..++     . ..+....+++  .+.  ..++.|.|-
T Consensus       766 ~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~~~~~~~a  845 (863)
T TIGR00868       766 FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIENGTDLFIA  845 (863)
T ss_pred             ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccCCeEEEEE
Confidence            4566799999999773 234478999998754110   00   0111     1 1122233333  332  257899999


Q ss_pred             EEEEcCCcc
Q psy8139         762 ITAENVVGF  770 (1101)
Q Consensus       762 V~A~n~~G~  770 (1101)
                      |+|++..|.
T Consensus       846 i~a~d~~~~  854 (863)
T TIGR00868       846 VQAIDKANL  854 (863)
T ss_pred             EEEEccccc
Confidence            999999875

distributions. found a row in 1A13.INFO that was not parsed out

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=91.22  E-value=25  Score=38.03  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             cccceEEEcCccCCccEEEEEEEEecCC
Q psy8139         403 VEDTELMVSGLEPGWRYQFRITAENVVG  430 (1101)
Q Consensus       403 ~~~~~l~i~~L~p~d~y~y~c~A~n~~G  430 (1101)
                      +..+.++|.+|.|++.|.|.|.|.|..-
T Consensus        12 g~~t~~t~~~L~p~t~YyfdVF~vn~~~   39 (300)
T PF10179_consen   12 GQKTNQTLSGLKPDTTYYFDVFVVNQLT   39 (300)
T ss_pred             CCCceEEeccCCCCCeEEEEEEEEECCC
Confidence            3457899999999999999999999743

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>KOG4228|consensus

Probab=91.09  E-value=0.55  Score=57.99  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=118.4

Q ss_pred             EEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEE-ECCeecCCCCceEEEee
Q psy8139         522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWL-HNGEPLTSGGRYEITHT  600 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~-~~g~~l~~~~~~~~~~~  600 (1101)
                      .|+|.+....|.....+.+.|...|.....+...   ....-..+...|....    ...|+ ........+  +.....
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt---~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~--~~~~~~   71 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVT---GSTATSWVQAELLGST----WPNYYQVIFKALSSG--YGYIDV   71 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCCcccc---cccccceeehhhccCC----ChhhhheeeeEeccC--cceeec
Confidence            3899999988888888888887755433222111   1111111222232222    12222 112222211  222222


Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe----cCCCCCCccEEEEecCCeEEEEeecCCCCCC------
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT----DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGG------  670 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~----~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g------  670 (1101)
                      .....+....+.+.+.+.+  .+.|..|.+..+..+.-.    .++..+............+.++|..+....+      
T Consensus        72 ~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  149 (1087)
T KOG4228|consen   72 DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVGPLAIAS  149 (1087)
T ss_pred             cceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccccccccCC
Confidence            2233344555555555555  666666654332211111    1223333333333444555566665432221      


Q ss_pred             ---cccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEE
Q psy8139         671 ---CKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL  747 (1101)
Q Consensus       671 ---~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~  747 (1101)
                         .+. .+.+......+.|..+.     ...+.++++++|.+|..   ..+..|.+.+...+......+..  ....+.
T Consensus       150 ~~~~~~-~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~~---~~~~~ykl~~~~~d~~~~~~v~~--~~~~~~  218 (1087)
T KOG4228|consen  150 PGLGPP-STYIQITTNANSPIQPG-----EEEEYTTITGSWSPPHA---VSLDTYKLLHLDPDTGYEISVTL--TPPGSG  218 (1087)
T ss_pred             cccCCC-CceEEEeccCCCCCCCC-----cceEEEEEEecCCCCCc---ccchhhhhhhcCCcccceeeeec--cCCCCC
Confidence               222 33333333334343333     35678899999998632   34778888777665443333332  344455


Q ss_pred             EEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      ...++.|...|.++|.+....+.+.+.+....
T Consensus       219 ~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~  250 (1087)
T KOG4228|consen  219 GTGDLGPPSISRFKCAEPDRGPLGSSTAEIEA  250 (1087)
T ss_pred             cccCCCCcccccccccCccccccCCCCcceEE
Confidence            66678888899999988877766554443333

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=91.02  E-value=1  Score=39.53  Aligned_cols=30  Identities=37%  Similarity=0.639  Sum_probs=23.6

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG  592 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~  592 (1101)
                      +...+|.|.+.|. | ...++|.++|..+..+
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~   46 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG   46 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCc
Confidence            4556899999984 4 5789999999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>KOG4427|consensus

Probab=90.69  E-value=0.69  Score=53.92  Aligned_cols=42  Identities=29%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy8139         265 LKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQA  306 (1101)
Q Consensus       265 ~~~~~~~~~~~~~~aa~~iQs~~r~~~~r~~~~~~~~~~~~~  306 (1101)
                      ..++++...+++++||+.||+.||+|..|++|+.-++.....
T Consensus        18 qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~   59 (1096)
T KOG4427|consen   18 QEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDN   59 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667778999999999999999999998766643333

>smart00406 IGv Immunoglobulin V-Type

Probab=90.67  E-value=0.8  Score=38.71  Aligned_cols=57  Identities=25%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             EEEEEEEeecCCC--eeEEEECCe--e---c-------------CCCCceEEEee--cceEEEEEccCCCCCCeEEEEE
Q psy8139         566 IKLKVSMAGMPPP--TARWLHNGE--P---L-------------TSGGRYEITHT--DRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       566 ~~l~c~~~g~p~~--~v~W~~~g~--~---l-------------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      +.|.|.......+  .+.|++...  .   +             ....++.+...  .+..+|.|.++++.|+|.|.|.
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            5678877765543  788876321  1   0             01233443333  4567899999999999999995

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.66  E-value=1.7  Score=37.28  Aligned_cols=63  Identities=24%  Similarity=0.398  Sum_probs=40.0

Q ss_pred             CCeEEEEEEEecc-CCC-eEEEEECCEEeecCCcEEEEe--cCCe----eEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         467 DEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRRQRIVT--DNDI----STLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       467 g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~~~~~~--~~~~----~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      +..++|.|.+.+. |.. .|.|.++|..+..........  .++.    +.|.+.   ..+...|+|.+.....
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            7889999999874 433 699999998876443222111  2221    233333   4556689999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=90.61  E-value=1.1  Score=39.26  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEeecceEEEEE---ccCCCCCCeEEEEEEEeC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITHTDRYLNLRI---SDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i---~~l~~~~~y~y~c~A~N~  626 (1101)
                      |....|.|.+.|. | ...++|.+||.++. +.........++.++.+   -.+.+.+.-.|+|.+.-.
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            5566899999985 3 56889999999886 32221111111222221   134466677788887653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=90.56  E-value=1.4  Score=39.82  Aligned_cols=68  Identities=10%  Similarity=-0.025  Sum_probs=44.7

Q ss_pred             ceeEEccCCeEEEEEEEeccCC---CeEEEEEC--CE-E-ee-----------cCCcEE--EEecCCeeEEEEeecCCCC
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPT---PKVSWYKD--GF-E-IF-----------SSRRQR--IVTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~--g~-~-~~-----------~~~~~~--~~~~~~~~~l~I~~l~~~d  519 (1101)
                      ....+..|..++|.|.+.|...   ..+.|.+.  +. . +.           ...++.  ...+.+..+|++.+|..+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3455777888999999976443   35788873  21 0 00           112222  2223456689999999999


Q ss_pred             CEEEEEEE
Q psy8139         520 EGEIKCTA  527 (1101)
Q Consensus       520 ~g~Y~C~a  527 (1101)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.16  E-value=0.72  Score=41.35  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             EccCCeEEEEEEEeccCCC--eEEEEECCEEeec
Q psy8139         464 ALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFS  495 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~  495 (1101)
                      +..+..++|.|.+.|.-+.  .++|.++|..+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            3346789999999985433  6899999988653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03270 envelope glycoprotein C; Provisional

Probab=89.73  E-value=16  Score=40.59  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=59.7

Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEEE
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARWL  583 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W~  583 (1101)
                      .|+|..+...++|.|+=...+..+...  ....|....+|.+.+.+.     .+..|++..-.|.+..+-   ...+.|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-----AVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            699999999999999988777665433  345566666887766554     566799999999998653   4579999


Q ss_pred             ECCeecCC
Q psy8139         584 HNGEPLTS  591 (1101)
Q Consensus       584 ~~g~~l~~  591 (1101)
                      .||.++..
T Consensus       258 ~ng~~V~~  265 (466)
T PHA03270        258 EGGDEVFA  265 (466)
T ss_pred             eCCccccC
Confidence            99998853

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=89.50  E-value=0.63  Score=37.35  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ...|.|.|...    -.|.|++ |..+....         ..++.+..+..+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            45688999652    3699999 55443211         23788888888999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=88.73  E-value=1.2  Score=40.42  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=49.1

Q ss_pred             CCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCc-cccccceEEEcCcc--CCccEEEEEEEEecCCC
Q psy8139         360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-HMVEDTELMVSGLE--PGWRYQFRITAENVVGF  431 (1101)
Q Consensus       360 ~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~l~i~~L~--p~d~y~y~c~A~n~~G~  431 (1101)
                      ...-...|+|+++.  +..+-..|.|+++..+...|..+.. .........+++..  +...|..+|+|..+...
T Consensus        32 s~nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~  104 (107)
T PF01108_consen   32 SVNFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQT  104 (107)
T ss_dssp             EETTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEE
T ss_pred             EECCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCcc
Confidence            34566899999963  3335678999999777778987621 22344677777755  67889999999875443

...

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=88.70  E-value=1.6  Score=38.57  Aligned_cols=64  Identities=13%  Similarity=0.180  Sum_probs=36.6

Q ss_pred             ccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCcEE-EEecCCeeEEEEe---ecCCC-CCEEEEEEEEeC
Q psy8139         465 LEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIH---QAALM-DEGEIKCTATNR  530 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~---~l~~~-d~g~Y~C~a~n~  530 (1101)
                      ..+..++|.|.+.|. |. ..++|.++|..+..+.... ...+++  ++.+.   .+.++ ....|+|.+...
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d--ty~~~S~L~vt~~~~~~~ysC~V~H~   84 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND--VYSTTSWLTVTKDSLGKKFRCIYKHE   84 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC--EEEEEEEEEECchhCCCeEEEEEEEC
Confidence            345678999999883 43 3689999998865432111 122222  22221   22333 233599998764

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=88.49  E-value=2.5  Score=37.31  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             EccCCeEEEEEEEecc--CC-CeEEEEECCE
Q psy8139         464 ALEDEKVEFTVQVEGI--PT-PKVSWYKDGF  491 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~--p~-~~v~W~~~g~  491 (1101)
                      +..|..++|.|.+.|.  |. ..++|.+++.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            4568889999999988  43 3689999874

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=88.43  E-value=4  Score=35.89  Aligned_cols=31  Identities=29%  Similarity=0.535  Sum_probs=24.7

Q ss_pred             eCCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139         562 MGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG  592 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~  592 (1101)
                      .|...+|.|.+.|. | ...++|.++|..+..+
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~   45 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG   45 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence            46778999999985 4 4589999999987653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=88.26  E-value=0.42  Score=52.74  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=10.1

Q ss_pred             cccccccCCCCCCCccccccCcC
Q psy8139        1006 SSEMSEASNITDDEDEEDEEDSF 1028 (1101)
Q Consensus      1006 ~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
                      .++++|+..-+.||||+|+++..
T Consensus        42 geEaEEEA~~EEdededd~~d~D   64 (458)
T PF10446_consen   42 GEEAEEEAEEEEDEDEDDEDDDD   64 (458)
T ss_pred             hHHHHHHHhhccccccccccccc
Confidence            33444444444444444444333

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=88.26  E-value=2  Score=37.82  Aligned_cols=65  Identities=12%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             eEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         469 KVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       469 ~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...+.|.+ .|.|.+.|+|+++...... .......++.   .+.|.+......+.-.|+|.+.+..-..
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            46789966 5889999999987211100 0001111121   2245554444456668999999876433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=88.19  E-value=2.6  Score=37.59  Aligned_cols=65  Identities=14%  Similarity=0.215  Sum_probs=38.1

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCce-EEEe--ecc---eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRY-EITH--TDR---YLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~-~~~~--~~~---~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      ++.++|.|.+.|. | ...|.|.++|..+..+... ....  ++.   .+.|.+..-...+...|+|.+....
T Consensus        17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            5668999999984 4 5789999999987532111 0111  111   2233333322234678999887643

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=88.15  E-value=2.7  Score=35.98  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=41.2

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEe--ecc----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITH--TDR----YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~--~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +..+.|.|.+.+. | ...|.|.++|..+..+.......  .++    .+.+.+.   ......|+|.+......
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            7889999999985 4 45899999999876543222111  111    2234444   55666899998766443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG4597|consensus

Probab=88.00  E-value=0.91  Score=50.34  Aligned_cols=120  Identities=14%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEeccCCCCC--CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE---CCEEee
Q psy8139         420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK---DGFEIF  494 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~--P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~g~~~~  494 (1101)
                      .++|.-....+...++..    ..+..+.|..+  |.+...|....+..|++.+++|.+.|.+.+.|+|.+   ++..+.
T Consensus       166 iv~C~~~~t~~~~~~~~c----ettm~ptpe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv  241 (560)
T KOG4597|consen  166 IVYCIHGKTWPRVSPDPC----ETTMAPTPEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV  241 (560)
T ss_pred             eEEEeccccCCCCCCCcc----ccccCCCCCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee
Confidence            456665555554443322    12222222222  455666777788999999999999999999999986   332222


Q ss_pred             c--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         495 S--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       495 ~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      .  ...+..........|.|-+-...|+|.|+|.+.+..|.....+.+.+.
T Consensus       242 ~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  242 MRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV  292 (560)
T ss_pred             ecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence            1  111111111233478999999999999999999999988776655543

>PHA03271 envelope glycoprotein C; Provisional

Probab=87.79  E-value=32  Score=38.14  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=53.6

Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEee-ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEE
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRL-EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARW  582 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V-~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W  582 (1101)
                      .+.|.++...|+|.|++...+......  ....+.+ +-||.+.+.+.     .+..|++....|.+..+-   ...+.|
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-----PVL~Ge~YkAtC~vAnYYPP~SvrlrW  282 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-----PVLSGENYKASCIVRHFYPPGSVYVSW  282 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEEE
Confidence            688999999999988776655433322  2233333 34665655443     466799999999998753   357999


Q ss_pred             EECCeecCC
Q psy8139         583 LHNGEPLTS  591 (1101)
Q Consensus       583 ~~~g~~l~~  591 (1101)
                      +.||.++..
T Consensus       283 f~nG~~V~~  291 (490)
T PHA03271        283 RQNGNIATP  291 (490)
T ss_pred             EeCCccccC
Confidence            999988754

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=87.23  E-value=4.3  Score=35.70  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCc-e-EEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGR-Y-EITHTDR----YLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~-~-~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      ++.++|.|.+.|. | ...|+|.++|..+..+.. . .....++    ...|.+..-...+...|+|.+.....
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            4557899999984 4 478999999988643211 1 1111111    12333332222356789999876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=87.17  E-value=2.3  Score=37.48  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             CCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139         563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG  592 (1101)
Q Consensus       563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~  592 (1101)
                      +..++|.|.+.|. | ...++|.++|..+..+
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~   47 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILG   47 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence            4568899999984 4 5688999999887543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG0942|consensus

Probab=87.12  E-value=0.69  Score=55.49  Aligned_cols=18  Identities=17%  Similarity=0.615  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q psy8139          40 SKTIVIQKYFRGYLLMRK   57 (1101)
Q Consensus        40 ~aa~~IQ~~~Rg~~~r~~   57 (1101)
                      ++|+.+|+.||||.+|++
T Consensus        30 ~~av~vQs~~Rg~~~r~~   47 (1001)
T KOG0942|consen   30 KNAVKVQSFWRGFRVRHN   47 (1001)
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            455555555555554443

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=87.10  E-value=0.79  Score=53.93  Aligned_cols=232  Identities=18%  Similarity=0.155  Sum_probs=18.6

Q ss_pred             cceEEEcC--ccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC--
Q psy8139         405 DTELMVSG--LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP--  480 (1101)
Q Consensus       405 ~~~l~i~~--L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p--  480 (1101)
                      ...|.|..  |.++ .|.|.+.+.-..+...  ..+..+++.+...+. .+.+.. .....+..++.+.|.....-+|  
T Consensus        37 ~~~l~ip~~~L~~G-~y~~~~~Vt~~~~~~~--~~~~~~~v~V~~s~l-~~~I~g-G~~~~~~~~~~i~ldgs~S~Dpd~  111 (440)
T PF02010_consen   37 TPQLTIPPYTLPPG-DYTFTLTVTASSNPGL--SSTDSVTVTVEPSPL-VAVIKG-GSSRTVGYNSDITLDGSQSYDPDG  111 (440)
T ss_dssp             SSECEEECES--SC-EEEEEEEEE--BCTTE--EEEEEEEEEEE------------------------------------
T ss_pred             ceEEEeCcccCCCC-CEEEEEEEEEECCCCc--eEEEEEEEEEeeccc-eeEEcC-CccceeecCceEEEeeEEEecccc
Confidence            35677766  4455 6777777762111111  123445555543222 222221 2222333344566655333233  


Q ss_pred             -----CCeEEEEECCEEeecCC----cEEEEecCCeeEEEE--eecCCCCCEEEEEEEEeCCC-ceEEEEEEeecc--CC
Q psy8139         481 -----TPKVSWYKDGFEIFSSR----RQRIVTDNDISTLII--HQAALMDEGEIKCTATNRAG-HSITKARLRLEA--PP  546 (1101)
Q Consensus       481 -----~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~l~I--~~l~~~d~g~Y~C~a~n~~g-~~~~s~~l~V~~--~p  546 (1101)
                           ...+.|.-.........    ............++|  ..+.++..|.+++.+....+ .......+.+..  +|
T Consensus       112 ~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p  191 (440)
T PF02010_consen  112 PPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPP  191 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCC
Confidence                 23567875433221000    000111122235555  45666666777777766554 223333344432  33


Q ss_pred             ccccCCCCCCCeEEeeCCEEEEEEEEee----cCCCeeEEEEC--------CeecCCCCceEEEeecceEEEEEc--cCC
Q psy8139         547 TIRLPKQYEDGLLFEMGEIIKLKVSMAG----MPPPTARWLHN--------GEPLTSGGRYEITHTDRYLNLRIS--DAR  612 (1101)
Q Consensus       547 ~~~~~~~~~~~~~v~~g~~~~l~c~~~g----~p~~~v~W~~~--------g~~l~~~~~~~~~~~~~~~sl~i~--~l~  612 (1101)
                      .+...........+..++.+.|.....+    .....+.|...        ...+.... ...........|.|.  .|.
T Consensus       192 ~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~  270 (440)
T PF02010_consen  192 TVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLE  270 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-cccccccccccccccccccc
Confidence            3333222211223566666666544443    23567888760        01110000 001111123345554  578


Q ss_pred             CCCCeEEEEEEEeCCCCc-eeEEEEEEecCC
Q psy8139         613 RADRGEYQAHGVNSLGED-VASFLVTVTDRP  642 (1101)
Q Consensus       613 ~~~~y~y~c~A~N~~G~~-~~s~~l~v~~~P  642 (1101)
                      ++..|.+++.+.+..|.. .....+.+..+|
T Consensus       271 ~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP  301 (440)
T PF02010_consen  271 PGSTYTFRLTVTDSSGSSGSASISFTVNAPP  301 (440)
T ss_dssp             -------------------------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            888999999998887664 445555554444

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=86.88  E-value=2.8  Score=50.05  Aligned_cols=40  Identities=13%  Similarity=-0.042  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy8139         160 MKQKASVIQQWYRNTKLMRLEA--SYLHELKAATITIQRRYR  199 (1101)
Q Consensus       160 ~~~aa~~IQ~~~R~~~~rr~~~--~~~~~~~~aa~~iQ~~~R  199 (1101)
                      ....++++|...||+..|++..  ...-..+..+...|..+|
T Consensus       405 ~llni~klq~L~nG~~iRkl~~l~~s~~~~hlsv~~~q~L~R  446 (1054)
T COG5261         405 ALLNIVKLQILGNGYEIRKLYSLGKSNCEEHLSVSLFQMLLR  446 (1054)
T ss_pred             HHHHHHHHHHhhcceeeeeeecccccchhHHHHHHHHHHHHH
Confidence            3446789999999998884321  000123445555555555

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=86.70  E-value=3.4  Score=37.87  Aligned_cols=69  Identities=19%  Similarity=0.349  Sum_probs=39.5

Q ss_pred             EccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCcE--EEEecCCeeEEEEe---ecCCC---C-CEEEEEEEEeCCC
Q psy8139         464 ALEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQ--RIVTDNDISTLIIH---QAALM---D-EGEIKCTATNRAG  532 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~--~~~~~~~~~~l~I~---~l~~~---d-~g~Y~C~a~n~~g  532 (1101)
                      +..+..++|.|.+.|. |. ..|+|.+||..+......  .....++ .++.+.   .+.+.   + ...|+|.+.....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~-gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~   93 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENT-STYSISSRLRVSATEWFNPRNTFTCIVQFYGG   93 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCC-CeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence            3356778999999884 44 479999999887543211  1111211 122221   22232   2 4579999887644


Q ss_pred             c
Q psy8139         533 H  533 (1101)
Q Consensus       533 ~  533 (1101)
                      .
T Consensus        94 ~   94 (115)
T cd05769          94 T   94 (115)
T ss_pred             c
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=86.22  E-value=3.1  Score=38.59  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=43.8

Q ss_pred             EEccCCeEEEEEEEec-----cCCCeEEEEECCEEeec--CCcEEE-Eec----------CCeeEEEEeecCCCCCEEEE
Q psy8139         463 TALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFS--SRRQRI-VTD----------NDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~--~~~~~~-~~~----------~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      ...-++++.|+|.+..     .+...|.|..+|..+..  +..... ...          .|..+|.+.....- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            3467889999999865     23346999999886642  111111 000          12234555553333 89999


Q ss_pred             EEEEeCCCceEEEEEEee
Q psy8139         525 CTATNRAGHSITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~~~~s~~l~V  542 (1101)
                      |.+............|..
T Consensus       102 CeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEE
Confidence            999988776666665555

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=86.07  E-value=0.53  Score=47.59  Aligned_cols=11  Identities=27%  Similarity=0.434  Sum_probs=5.3

Q ss_pred             EEEEEEcCCcc
Q psy8139         760 FRITAENVVGF  770 (1101)
Q Consensus       760 ~~V~A~n~~G~  770 (1101)
                      |.+...|..|.
T Consensus       172 ~KC~SCNrlGq  182 (314)
T PF06524_consen  172 FKCQSCNRLGQ  182 (314)
T ss_pred             ccccccccccc
Confidence            34555555553

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=85.99  E-value=2.6  Score=37.74  Aligned_cols=29  Identities=31%  Similarity=0.634  Sum_probs=23.5

Q ss_pred             CCEEEEEEEEeecC--CCeeEEEECCeecCC
Q psy8139         563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTS  591 (1101)
Q Consensus       563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~  591 (1101)
                      +..++|.|.+.|.-  ...++|.++|.++..
T Consensus        16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768          16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             CCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            66799999999854  357899999988754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03273 envelope glycoprotein C; Provisional

Probab=85.47  E-value=35  Score=38.57  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceEEEE--EEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEEE
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSITKA--RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARWL  583 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~--~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W~  583 (1101)
                      .|+|..+...++|.|+=...+..|......  .+....+|.+.+.+.     .+..|++....|.+..+-   ...+.|+
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-----PSLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            599999999999999866555555444434  444466787766554     567799999999998653   4589999


Q ss_pred             ECCeecC
Q psy8139         584 HNGEPLT  590 (1101)
Q Consensus       584 ~~g~~l~  590 (1101)
                      .||.++.
T Consensus       274 ~dg~~V~  280 (486)
T PHA03273        274 KNAKEVD  280 (486)
T ss_pred             eCCeecc
Confidence            9999987

>KOG3632|consensus

Probab=85.18  E-value=1.2  Score=53.59  Aligned_cols=102  Identities=17%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC-Ccc-----C
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV-VGF-----S  771 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~-~G~-----g  771 (1101)
                      +++.++..|+|-+-. .+-     -.+.|-.....     .........+++-+|.|++.|.++|-|.-. .+.     -
T Consensus       682 n~tqtSa~itwvp~n-sn~-----~Hviyln~eE~-----~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v  750 (1335)
T KOG3632|consen  682 NATQTSAMITWVPFN-SNF-----LHVIYLNAEEP-----RPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMV  750 (1335)
T ss_pred             hhhchhhheeeeecC-CCc-----ceeeecCCccC-----CCchhhhhHHHHhccCCCCccceecccccCcCCCcccccc
Confidence            678899999998631 110     11122221111     111134456789999999999999988655 221     1


Q ss_pred             CC---CCCCCcEEecCCCCCCCCCcccc---cccccceeccccCCCC
Q psy8139         772 EP---GPLSEPLTVTYQRSPAAAPSFIR---ALHDTTALEDEKPRNT  812 (1101)
Q Consensus       772 ~~---S~~s~~~t~~~~~~P~~~p~~~~---~~~~s~~~~~w~p~~~  812 (1101)
                      ++   .....+.|+  ...|++||..+.   -.+.+.+.+.|.|+..
T Consensus       751 ~~etr~atv~f~tL--pAGppappldV~vE~g~spg~l~vswrPptl  795 (1335)
T KOG3632|consen  751 PMETRQATVLFRTL--PAGPPAPPLDVKVETGGSPGRLEVSWRPPTL  795 (1335)
T ss_pred             hhhhhccceeeecc--cCCCCCCchheeeecCCCCceeeeeccCcee
Confidence            11   122223333  478888888876   4455677789988655

>PHA02982 hypothetical protein; Provisional

Probab=85.06  E-value=6  Score=39.22  Aligned_cols=106  Identities=10%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             EEeeCCEEEEEEEEee-cCCCeeEEEECC-eecC------------------CCCceEEEeecceEEEEEccCCCCCCeE
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPPTARWLHNG-EPLT------------------SGGRYEITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g-~~l~------------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      ....++++.|.|.... +.-....|..+. ..+.                  ....+.++.++..++|+|..+.+...|.
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            4455888899997432 234467787532 1111                  0124566778889999999999999999


Q ss_pred             EEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139         619 YQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY  680 (1101)
Q Consensus       619 y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~  680 (1101)
                      |+|.|....|......              ....+..+.|.+.|..  .++-..|+-|...+
T Consensus       115 Ytc~~ks~~~k~E~c~--------------kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~  160 (251)
T PHA02982        115 FTCEAKDAEGKEETCE--------------KCLEIQKEDILYVVEE--HNNETIITCFVGSK  160 (251)
T ss_pred             eEEEEecCCCchheeh--------------eeeeEecceEEEEEEe--cCCeEEEEEEEEec
Confidence            9999988766543311              1223335677888883  44444555555444

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=85.05  E-value=0.44  Score=60.29  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=18.6

Q ss_pred             cccccccccCCCCCCCccccccCcCccccccccCCC
Q psy8139        1004 QYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPE 1039 (1101)
Q Consensus      1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1101)
                      .-++.||-..|---|.|+||||+..|.+|++|+++|
T Consensus       140 l~eed~~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~  175 (2849)
T PTZ00415        140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEE  175 (2849)
T ss_pred             cchhhcCcccccccCCcccccccccccccccccccc
Confidence            346667777666555555544444444444443333

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=84.77  E-value=3.3  Score=33.35  Aligned_cols=49  Identities=16%  Similarity=0.252  Sum_probs=35.4

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .+.+.|.|..    .-+|.|.+ |..+....         +.++.+......-.|.|.|.+++
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            4568899965    24599999 54443211         45677888888889999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=84.71  E-value=3.3  Score=36.66  Aligned_cols=29  Identities=17%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             EccCCeEEEEEEEeccC---CCeEEEEECCEE
Q psy8139         464 ALEDEKVEFTVQVEGIP---TPKVSWYKDGFE  492 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~  492 (1101)
                      ...+..++|.|.+.+.-   ...|+|.++|..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            44678899999998843   347999999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1832|consensus

Probab=84.64  E-value=0.57  Score=55.58  Aligned_cols=6  Identities=17%  Similarity=1.049  Sum_probs=2.8

Q ss_pred             HHHHHH
Q psy8139         285 SLWKMY  290 (1101)
Q Consensus       285 s~~r~~  290 (1101)
                      ..||-+
T Consensus       614 ~~w~~~  619 (1516)
T KOG1832|consen  614 PVWRYL  619 (1516)
T ss_pred             cccccc
Confidence            345444

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=84.46  E-value=7  Score=34.52  Aligned_cols=28  Identities=14%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             EeeCCEEEEEEEEeec--C-CCeeEEEECCe
Q psy8139         560 FEMGEIIKLKVSMAGM--P-PPTARWLHNGE  587 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~--p-~~~v~W~~~g~  587 (1101)
                      +..|..++|.|.+.|.  | ...++|.+++.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            3447788999999998  3 46889999874

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []

Probab=84.43  E-value=0.67  Score=48.79  Aligned_cols=32  Identities=34%  Similarity=0.476  Sum_probs=18.7

Q ss_pred             cccCCCCCCCccccccCcCccccccccCCCcc
Q psy8139        1010 SEASNITDDEDEEDEEDSFDFDELFEDNPEEE 1041 (1101)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1101)
                      .|.++-++++.++++|+.+++|.||+|.+++|
T Consensus        36 ~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de   67 (240)
T PF05764_consen   36 QEEEDDEEFESEEEEEDEEEDDSDFDDSEDDE   67 (240)
T ss_pred             cccCCCccccCCCccccccccccccCccccCC
Confidence            44455566666666666665566666665543

They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=84.38  E-value=4.9  Score=35.28  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=38.6

Q ss_pred             EccCCeEEEEEEEecc-CC--CeEEEEECCEEeecCCcEEE----EecCCeeEEEEeecCCCCCE-EEEEEEEeC
Q psy8139         464 ALEDEKVEFTVQVEGI-PT--PKVSWYKDGFEIFSSRRQRI----VTDNDISTLIIHQAALMDEG-EIKCTATNR  530 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~-p~--~~v~W~~~g~~~~~~~~~~~----~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~  530 (1101)
                      +.+|..+++.|.+.+. |.  ..+.|++....+........    ........+++.-. .+|.| .|.|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            4789999999998653 43  46899876555443221110    00111234555543 55555 899998744

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=84.09  E-value=7.8  Score=34.14  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=38.6

Q ss_pred             EEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         565 IIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       565 ~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ...+.|.+. |.|.+.|+|+++...... ........+.   .+.|.+......+.-.|+|.+.|..-..
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            456889884 789999999987211100 0000011111   3456665555566788999999876543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=84.03  E-value=6.2  Score=34.78  Aligned_cols=27  Identities=11%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             cCCeEEEEEEEeccCC--CeEEEEECCEE
Q psy8139         466 EDEKVEFTVQVEGIPT--PKVSWYKDGFE  492 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~--~~v~W~~~g~~  492 (1101)
                      .+..++|.|.+.|.-+  ..|+|.++|..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            4566899999988433  46899999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03269 envelope glycoprotein C; Provisional

Probab=83.94  E-value=27  Score=39.53  Aligned_cols=79  Identities=13%  Similarity=0.077  Sum_probs=57.7

Q ss_pred             eEEEEeecCCCCCEEEEEEEEeCC-Cc--eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeE
Q psy8139         508 STLIIHQAALMDEGEIKCTATNRA-GH--SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTAR  581 (1101)
Q Consensus       508 ~~l~I~~l~~~d~g~Y~C~a~n~~-g~--~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~  581 (1101)
                      -.|+|.++...++|.|.=...+.. +.  ......+.+..+|.+.+.+.     .+..|++..-.|.+..+-   +..+.
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-----PVL~Ge~YkAtC~vA~YYPp~Svrlr  363 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-----PVLLGNPYAAYCKVNKYYPPHSVIVK  363 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence            369999999999999975544322 22  23445666667887766554     567799999999998653   45899


Q ss_pred             EEECCeecCC
Q psy8139         582 WLHNGEPLTS  591 (1101)
Q Consensus       582 W~~~g~~l~~  591 (1101)
                      |+.||.++..
T Consensus       364 Wf~ng~~V~~  373 (566)
T PHA03269        364 WTSNFGNIGK  373 (566)
T ss_pred             EEeCCcccCc
Confidence            9999988874

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=82.51  E-value=9.3  Score=34.24  Aligned_cols=50  Identities=14%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             ceEEEEEEeCCCCCceeecccc-cCccE-----EEEc--CCCCCceEEEEEEEEcCCcc
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHM-VEDTE-----LMVS--GLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      +.|.+.|...+ ..|....... ...++     ..+.  +..-++.|.++|.|.|..|.
T Consensus        38 ~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~~   95 (104)
T PF09067_consen   38 TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQVEATNALGS   95 (104)
T ss_dssp             CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTEE
T ss_pred             CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEEEEeccCCCc
Confidence            34888888877 5676654321 22233     4454  78889999999999999985

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>KOG4427|consensus

Probab=82.16  E-value=12  Score=44.34  Aligned_cols=17  Identities=18%  Similarity=0.262  Sum_probs=12.2

Q ss_pred             CceEEEEEEEEcCCccC
Q psy8139         755 GWRYQFRITAENVVGFS  771 (1101)
Q Consensus       755 ~t~Y~~~V~A~n~~G~g  771 (1101)
                      .-...++|.-+|..|--
T Consensus       736 alKs~IrVkFVNeqGl~  752 (1096)
T KOG4427|consen  736 ALKSVIRVKFVNEQGLD  752 (1096)
T ss_pred             hhhceEEEEEecccCCc
Confidence            44567888888887753

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=81.35  E-value=8.6  Score=33.84  Aligned_cols=68  Identities=12%  Similarity=0.067  Sum_probs=40.2

Q ss_pred             EEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         565 IIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       565 ~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      ...+.|.+. |.|.+.|+|+.+...... .......++.   .+.|.+......+.-.|+|.|.|..-.....
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~   88 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL   88 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            466899776 778999999987211110 0111111111   3456665555567788999999976544443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=80.83  E-value=4.1  Score=32.00  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCC
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      .|-|-+...+|+|.|.|...|..-....+..|.|...+
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            78888999999999999999877666667777776543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=80.19  E-value=9.3  Score=34.69  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=43.5

Q ss_pred             eEEeeCCEEEEEEEEeecCC---CeeEEEE--CCeecC--------------CCCceE--EEeecceEEEEEccCCCCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP---PTARWLH--NGEPLT--------------SGGRYE--ITHTDRYLNLRISDARRADR  616 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~---~~v~W~~--~g~~l~--------------~~~~~~--~~~~~~~~sl~i~~l~~~~~  616 (1101)
                      ..+.+|..++|.|...|...   ..++|.+  +| .+.              ...++.  ...+.+.-+|.+.+|+..|.
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            36677888999999977542   4688876  23 110              112222  22334466899999999999


Q ss_pred             eEEEEEE
Q psy8139         617 GEYQAHG  623 (1101)
Q Consensus       617 y~y~c~A  623 (1101)
                      ..|.|.-
T Consensus        87 a~Y~Ca~   93 (115)
T cd05721          87 DIYFCKI   93 (115)
T ss_pred             eEEEEEe
Confidence            9999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []

Probab=80.01  E-value=0.56  Score=57.06  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=0.0

Q ss_pred             cCCccEEEEEEEEecCC
Q psy8139         414 EPGWRYQFRITAENVVG  430 (1101)
Q Consensus       414 ~p~d~y~y~c~A~n~~G  430 (1101)
                      .+|..+.|++.+....|
T Consensus       185 ~~G~~~~~~l~~r~l~G  201 (787)
T PF03115_consen  185 PVGRPAVFKLTARDLAG  201 (787)
T ss_dssp             -----------------
T ss_pred             cCCCceEEEECHHHcCC
Confidence            34444444444444433

Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1101
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-24
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		4e-17
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-16
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		8e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-15
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-08
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		8e-15
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-07
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-14
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-14
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-12
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-12
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		5e-12
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		6e-12
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		9e-12
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		9e-12
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-10
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		6e-10
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-09
1x5y_A	111	Solution Structure Of The Fibronectin Type-Iii Doma		7e-09
1x5y_A	111	Solution Structure Of The Fibronectin Type-Iii Doma		7e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-08
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-08
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-08
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-08
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		6e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		6e-08
2yuw_A	110	Solution Structure Of 2nd Fibronectin Domain Of Slo		7e-08
2yuw_A	110	Solution Structure Of 2nd Fibronectin Domain Of Slo		7e-08
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		7e-08
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		8e-08
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		1e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-07
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-07
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-07
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-07
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		4e-07
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		8e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-07
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		1e-06
2crz_A	110	Solution Structure Of The Fifth Fniii Domain Of Hum		1e-06
2crz_A	110	Solution Structure Of The Fifth Fniii Domain Of Hum		1e-06
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		3e-06
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		3e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-06
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		4e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		6e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		6e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		1e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		1e-05
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		1e-05
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		2e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		2e-05
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		2e-05
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		2e-05
2lqr_A	108	Nmr Structure Of Ig3 Domain Of Palladin Length = 10		5e-05
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		5e-05
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		1e-04
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		1e-04
2dm2_A	110	Solution Structure Of The First Ig Domain Of Human		1e-04
2e7c_A	118	Solution Structure Of The 6th Ig-Like Domain From H		2e-04
1g1c_A	99	I1 Domain From Titin Length = 99		5e-04

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 127/335 (37%), Gaps = 53/335 (15%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
           A AP F   L +             +V G P P V WY+ G EI +   +  + +     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEI 565
             LII      D    +  ATN+ G     A L +E P  I LPK  E  G +  + GE+
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGV 624
           + +K+  +G P P   W    + + + G Y++  T  + +L   +   R D G Y     
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRXX 684
           N  G D  +  + V D P PP   KV      SV L+W+EP  DGG KI NYIVE     
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKC--- 238
Query: 685 XXXXXXXXXXDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
                                                       T +  W+R       +
Sbjct: 239 -------------------------------------------ATTAERWLRVG--QARE 253
Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 779
           T   V  L     YQFR+ AEN  G S+P   SEP
Sbjct: 254 TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           AP   + + D T    E  + + Q+ G P P + WY+ G E+  SR+ ++ +D    TL 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           +      DEG   C ATN  G   T ++L L+A P        ++     +G  ++L V 
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGED 630
             G P P   W H  + L +     I +T+ Y +L + +  R+   G+Y+    N  G  
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 631 VASFLVTVTDR 641
            A   V + D+
Sbjct: 187 DAILDVEIQDK 197

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 14/243 (5%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
           +VE+T  L V  +  G   Q+   A NV G           + + Q      P FI+ L 
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQEPPRFIKKLE 298
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
            +  + +DE   +  ++ G P  KV WYKD  EI  S + R+     ++ L ++  ++ D
Sbjct: 299 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 358
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
            G+  C A N AG + +   L+++ PP  R      + L    G  + L+  + G PP  
Sbjct: 359 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 415
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
             W  +   L SG +Y+I   +   ++ I +   AD GEYQ    N +G D     +T+ 
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 640 DRP 642
             P
Sbjct: 476 APP 478

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI  L    A   E +    +V+G P  +++WYK+  ++ S+   ++   N++++L+I
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRL---EAPPTI-RLPKQYEDGLLFEMGEIIKL 568
           ++    D GE  C A N  G   + A L +   + PP+  R  K   + L F     +  
Sbjct: 66  NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP----VAF 121
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
           +  + G  P    W  +GE L      + +       L+I    ++  G+Y     N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 629 EDVASFLVTVTDRPLPP----GKAKVVMTLGKSVTL 660
              +S  +T+++  +PP        V + LG+S T 
Sbjct: 182 TASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTF 217

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 14/229 (6%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
           +VE+T  L V  +  G   Q+   A NV G           + + Q    A P FI+ L 
Sbjct: 56  LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQAPPRFIKKLE 106
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
            +  + +DE   +  ++ G P  KV WYKD  EI  S + R+     ++ L ++  ++ D
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
            G+  C A N AG + +   L+++ PP  R      + L    G  + L+  + G PP  
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 223
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
             W  +   L SG +Y+I   +   ++ I +   AD GEYQ    N +G
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Query: 450 AAAPSF--IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           A AP F  ++ +    AL  E   F   V G    K++W KD  EI      ++    + 
Sbjct: 2   AMAPPFFDLKPVSVDLAL-GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           +TL + +    D G+  C A+N AG     A+L ++APP  R  K+ E   + +  E  +
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPP--RFIKKLEPSRIVKQDEHTR 118
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
            +  + G P     W  +   +    ++ ++  +    L + +    D G+Y     N+ 
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTL 654
           G   +S  + V + P+   K   V TL
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETL 205

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 14/229 (6%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
           +VE+T  L V  +  G   Q+   A NV G           + + Q      P FI+ L 
Sbjct: 56  LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQEPPRFIKKLE 106
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
            +  + +DE   +  ++ G P  KV WYKD  EI  S + R+     ++ L ++  ++ D
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
            G+  C A N AG + +   L+++ PP  R      + L    G  + L+  + G PP  
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 223
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
             W  +   L SG +Y+I   +   ++ I +   AD GEYQ    N +G
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Query: 450 AAAPSF--IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           A AP F  ++ +    AL  E   F   V G    K++W KD  EI      ++    + 
Sbjct: 2   AMAPPFFDLKPVSVDLAL-GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           +TL + +    D G+  C A+N AG     A+L ++ PP  R  K+ E   + +  E  +
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP--RFIKKLEPSRIVKQDEHTR 118
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
            +  + G P     W  +   +    ++ ++  +    L + +    D G+Y     N+ 
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTL 654
           G   +S  + V + P+   K   V TL
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETL 205

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDIST 509
           AP+F + L     LE     F   + G P P+VSW++DG  I +S     +I   +  + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
           L I      + G     ATN +G + + A L ++   APP      Q    +    G  +
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF---VQRLQSMTVRQGSQV 121
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           +L+V + G+P P  ++  +G  + S   ++I+      +L I++A   D G Y  +  NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 627 LG 628
           +G
Sbjct: 182 VG 183

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--RIVTDNDIST 509
           AP+F + L     LE     F   + G P P+VSW++DG  I +S     +I   +  + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
           L I      + G     ATN +G + + A L ++   APP      Q    +    G  +
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF---VQRLQSMTVRQGSQV 121
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           +L+V + G+P P  ++  +G  + S   ++I+      +L I++A   D G Y  +  NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 627 LGEDVAS 633
           +G   ++
Sbjct: 182 VGRATST 188

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 5/196 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
           A AP F   L +             +V G P P V WY+ G EI +   +  + +     
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEI 565
             LII      D    +  ATN+ G     A L +E P  I LPK  E  G +  + GE+
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGV 624
           + +K+  +G P P   W    + + + G Y++  T  + +L   +   R D G Y     
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTD 640
           N  G D  +  + V D
Sbjct: 182 NRFGIDQKTVELDVAD 197

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P F++   D T L      F  Q  G P P+++W K G ++ S R + I  D+   +++ 
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 513 HQAALM--DEGEIKCTATNRAGHSITKARLRL-------EAPPTIRLPKQYEDGLLFEMG 563
            Q   +  DE   +CTATN  G   T A+L +          PTI +  Q +   + E G
Sbjct: 68  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK---VVEKG 124
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
               +  +  G P P   W  +    +P  S GR +     R   L+I  +  +D+G+Y+
Sbjct: 125 RTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQL---RSGALQIESSEESDQGKYE 181
Query: 621 AHGVNSLG 628
               NS G
Sbjct: 182 CVATNSAG 189

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 452 APSF-IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDIST 509
           APS   R   +T AL  ++V       G P P++ W K DG    S   Q    +    T
Sbjct: 205 APSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDG----SLSPQWTTAE---PT 257
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKL 568
           L I   +  DEG  +C A N  G    + R+ ++A P  +++    E     ++G  ++ 
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA----DIGSNLRW 313
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
             + AG P PT RWL NGEPL S  R E+   D    LR S     D G YQ    N  G
Sbjct: 314 GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHG 369
Query: 629 EDVASFLVTV 638
              AS  + V
Sbjct: 370 TIYASAELAV 379

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 5/194 (2%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDIST 509
           AP F   L +             +V G P P V WY+ G EI +   +  + +       
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEIIK 567
           LII      D    +  ATN+ G     A L +E P  I LPK  E  G +  + GE++ 
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNS 626
           +K+  +G P P   W    + + + G Y++  T  + +L   +   R D G Y     N 
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 627 LGEDVASFLVTVTD 640
            G D  +  + V D
Sbjct: 182 FGIDQKTVELDVAD 195

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 419
           + R+  ++ WE PE+DGGS +LGY+VE +  GS  W  A+   V+ TE  ++GL  G  Y
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEY 171
Query: 420 QFRITAENVVGFSEPGPLSEPL 441
            FR++A+N  G S+P  LS P+
Sbjct: 172 SFRVSAQNEKGISDPRQLSVPV 193

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
           + R+  ++ WE PE+DGGS +LGY+VE +  GS  W  A+   V+ TE  ++GL  G  Y
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEY 171
Query: 759 QFRITAENVVGFSEPGPLSEPL 780
            FR++A+N  G S+P  LS P+
Sbjct: 172 SFRVSAQNEKGISDPRQLSVPV 193

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI+   D T L      F  Q  G P P+++W K G ++ S R + I  D+   +++ 
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 513 HQAALM--DEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
            Q   +  DE   +CTATN  G   T A+L +    + P   P+I +  Q +   + E  
Sbjct: 67  IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK---VVEKA 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
               +  +  G P P   W  +    +P TS GR +     R   L+I  +  +D+G+Y+
Sbjct: 124 RTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQL---RSGALQIESSEESDQGKYE 180
Query: 621 AHGVNSLG 628
               NS G
Sbjct: 181 CVATNSAG 188

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
             G+PTP ++WYK G ++ S + +    +N    L I   +  D GE  C A+N+ G   
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAK---FENFNKALRITNVSEEDSGEYFCLASNKMGSIR 302
Query: 536 TKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
               +R++A P  +  PK     L+   GE  +L     G P PT +W+ NGEPL S   
Sbjct: 303 HTISVRVKAAPYWLDEPKN----LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP- 357
Query: 595 YEITHTDRYL---NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
               + +R +    +   D + + R  YQ +  N  G  +A+  V+V D
Sbjct: 358 ---PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 16/235 (6%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEIFSS-----RRQRIVTDNDIS 508
           I  L + T  E+ +V      EG P P+++W +  DGF           R  +   +  S
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEII 566
           +L I    L D G   C A +R G       L +E       PK   +  ++    G  I
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----YAPKFISNQTIYYSWEGNPI 118
Query: 567 KLKVSMAGMPPPTARWLHNGE--PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
            +   +   PP +  W  +    P  +    +   T R + L I+     D G Y     
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
           N +G     +++ + D P  P   K++     +  +S+++P+  GG  I +Y V+
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 16/235 (6%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEIFSS-----RRQRIVTDNDIS 508
           I  L + T  E+ +V      EG P P+++W +  DGF           R  +   +  S
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEII 566
           +L I    L D G   C A +R G       L +E       PK   +  ++    G  I
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----YAPKFISNQTIYYSWEGNPI 118
Query: 567 KLKVSMAGMPPPTARWLHNGE--PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
            +   +   PP +  W  +    P  +    +   T R + L I+     D G Y     
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
           N +G     +++ + D P  P   K++     +  +S+++P+  GG  I +Y V+
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
           DT AL  + V       G P P++ W K DG     S+  + ++   +  L I      D
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDG-----SQTSKWLSSEPL--LHIQNVDFED 268
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
           EG  +C A N  G    + R+ + A P  + +    E     ++G  ++     +G P P
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEA----DIGSDLRWSCVASGKPRP 324
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
             RWL +G+PL S  R E++  +    LR S     D G YQ    N  G   AS  +TV
Sbjct: 325 AVRWLRDGQPLASQNRIEVSGGE----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Mouse Myosin-Binding Protein C, Fast-Type Homolog Length = 111

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 426
           ++W PP+  G   + GYLVE+   GS  WV A+   VE     V  L  G R  FR+   
Sbjct: 27  LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 427 NVVGFSEPGPLSEPLTV 443
           N+ G SEP  L +P+T+
Sbjct: 87  NIAGRSEPATLLQPVTI 103

>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Mouse Myosin-Binding Protein C, Fast-Type Homolog Length = 111

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 765
           ++W PP+  G   + GYLVE+   GS  WV A+   VE     V  L  G R  FR+   
Sbjct: 27  LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 766 NVVGFSEPGPLSEPLTV 782
           N+ G SEP  L +P+T+
Sbjct: 87  NIAGRSEPATLLQPVTI 103

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 437 LSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF 494
           ++EP++ +  R+PA    P  +   H  + L           +G P P   WYK  F   
Sbjct: 203 ITEPISSSAPRTPALVQKPLELMVAHTISLL--------CPAQGFPAPSFRWYK--FIEG 252
Query: 495 SSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
           ++R+Q +V ++ +     TLII  A + D G+  C   N  G    +  L + AP + ++
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312
Query: 551 --PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI 608
             P Q  D      G          G P  T  W+ +G+         I H++    LRI
Sbjct: 313 DPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRI 357
Query: 609 SDARRADRGEYQA 621
              ++ D+G YQ 
Sbjct: 358 ESVKKEDKGMYQC 370

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 437 LSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF 494
           ++EP++ +  R+PA    P  +   H  + L           +G P P   WYK  F   
Sbjct: 209 ITEPISSSAPRTPALVQKPLELMVAHTISLL--------CPAQGFPAPSFRWYK--FIEG 258
Query: 495 SSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
           ++R+Q +V ++ +     TLII  A + D G+  C   N  G    +  L + AP + ++
Sbjct: 259 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 318
Query: 551 --PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI 608
             P Q  D      G          G P  T  W+ +G+         I H++    LRI
Sbjct: 319 DPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRI 363
Query: 609 SDARRADRGEYQA 621
              ++ D+G YQ 
Sbjct: 364 ESVKKEDKGMYQC 376

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 485 SWYKDGFEIFSSRRQRIVTDNDIST--LIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
           +++K+G ++  +   RI   N  S   L+       DEG   C   N  G    K  L+L
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-QKHSLKL 303
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
                 +  ++ E  ++ + G+ + +   + G+P P   W HN +PL SGGR  +T +  
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDS-- 360
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
              L I   +  D+G Y     N  G+     LV V 
Sbjct: 361 --GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P F R   D T +      F  Q  G P PK+ W K G ++ S++R  ++  +D S  ++
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVL 65
Query: 513 HQAAL---MDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEM 562
               L    DE   +C A+N  G      RL +    + P   PTI +  Q +   + E 
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK---VVER 122
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARRADRGEY 619
                +  + +G P P   W  +  P+    + GR +   ++    L+I  +  +D+G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 620 QAHGVNSLG 628
           +    NS G
Sbjct: 183 ECVATNSAG 191

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
           + TA   E++ F+ +  G P P +SW+++G  I     ++ +     + L +      D 
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDG 70
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
           G   C ATN+AG    +A L++   P I    Q ++   +E G++  L     G P P  
Sbjct: 71  GPYVCRATNKAGEDEKQAFLQVFVQPHI---IQLKNETTYENGQVT-LVCDAEGEPIPEI 126
Query: 581 RWLH--NGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
            W    +G   T G     GR E+       +L I D + +D G Y     + +G
Sbjct: 127 TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDISTL 510
           AP     L    AL +E   F   VE  P P++SW ++   I     R  I  +  + T+
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 511 IIHQAALMDEGEIKCTATNRAGHSI-TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK-- 567
           +  + +  D+G   CTA N  G ++ +   L+++  P I  P      +  ++ E +K  
Sbjct: 67  LSVEDS--DDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP-----INVKIIEGLKAV 119
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
           L  +  G P P+  W+     L    R  +  +    +LRI + ++ D G+Y+    NSL
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSL 176
Query: 628 G 628
           G
Sbjct: 177 G 177

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 32/213 (15%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
           PL   YQ     +P  I    D    ++E      +VEG P P + W+KDG  + ++ ++
Sbjct: 2   PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 500 RIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK-ARLRLEA--------PP 546
                     L  ++        D GE  C A NR G ++++ A L++          P 
Sbjct: 57  SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 547 TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-- 604
             R+ K   +  L E G          G+P PT  W+ +G PL          + R    
Sbjct: 117 DTRVAKG--ETALLECG-------PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 605 ---NLRISDARRADRGEYQAHGVNSLGEDVASF 634
              NL IS+    D G Y+    N +G   +S+
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 32/213 (15%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
           PL   YQ     +P  I    D    ++E      +VEG P P + W+KDG  + ++ ++
Sbjct: 2   PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 500 RIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK-ARLRLEA--------PP 546
                     L  ++        D GE  C A NR G ++++ A L++          P 
Sbjct: 57  SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 547 TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-- 604
             R+ K   +  L E G          G+P PT  W+ +G PL          + R    
Sbjct: 117 DTRVAKG--ETALLECG-------PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 605 ---NLRISDARRADRGEYQAHGVNSLGEDVASF 634
              NL IS+    D G Y+    N +G   +S+
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200

>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type Myosin-Binding Protein C Length = 110

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
           S+     T+RW PP++ G + + GY++E+   G+  W+ A+  +++ T+  ++GL    +
Sbjct: 18  SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAK 77
Query: 419 YQFRITAENVVGFSEPGPLSEPLTV 443
              R+ A N  G SEP   S+P+ V
Sbjct: 78  IFVRVKAVNAAGASEPKYYSQPILV 102

>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type Myosin-Binding Protein C Length = 110

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
           S+     T+RW PP++ G + + GY++E+   G+  W+ A+  +++ T+  ++GL    +
Sbjct: 18  SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAK 77
Query: 758 YQFRITAENVVGFSEPGPLSEPLTV 782
              R+ A N  G SEP   S+P+ V
Sbjct: 78  IFVRVKAVNAAGASEPKYYSQPILV 102

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 355 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 414
           P   ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   + + E  VSGL 
Sbjct: 17  PVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLT 76
Query: 415 PGWRYQFRITAENVVG-FSEPGPLSEPLT 442
               Y+FR+ A+N  G  S P   S+ +T
Sbjct: 77  EDAAYEFRVIAKNAAGAISPPSEPSDAIT 105

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
           ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   + + E  VSGL     
Sbjct: 21  NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAA 80
Query: 758 YQFRITAENVVG-FSEPGPLSEPLT 781
           Y+FR+ A+N  G  S P   S+ +T
Sbjct: 81  YEFRVIAKNAAGAISPPSEPSDAIT 105

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDISTLI 511
           P F++A  D T  E +      +V G+PTP +SW  DG  +   S  + +V +N + +LI
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 512 IHQAALMDEGEIKCTATNRAGHS 534
           I      D G   C ATNRAG +
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQN 92

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 473 TVQVE----GIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
           TV++E    G P P + W + DG  I  +R+ R    N I  L I      D G  +C A
Sbjct: 221 TVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSYECVA 276
Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
            N  G ++ K +L   A P      Q  + +   M E +  +    G P PT RWL NG+
Sbjct: 277 ENSRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 333
Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           PL +  R +I        L I+    +D G YQ    N  G   +S  ++V
Sbjct: 334 PLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI+   D   +      F  Q  G P P+V+W K G ++ S R + I  D     ++ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
            Q      DE   +C A N  G     A+L +    + P   P I +  Q +   + E  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
               +  + +G P P   W  +    +P  S GR +     R   L+I  +   D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
               NS G
Sbjct: 181 CVATNSAG 188

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI+   D   +      F  Q  G P P+V+W K G ++ S R + I  D     ++ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL-------EAPPTIRLPKQYEDGLLFEMG 563
            Q      DE   +C A N  G     A+L +          P I +  Q +   + E  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
               +  + +G P P   W  +    +P  S GR +     R   L+I  +   D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
               NS G
Sbjct: 181 CVATNSAG 188

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSI 535
           PTP   WYK  F   ++R+Q +V ++ +     TLII  A + D G+  C   N  G   
Sbjct: 243 PTPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 300
Query: 536 TKARLRLEAPPTIRL--PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG 593
            +  L + AP + ++  P Q  D      G          G P  T  W+ +G+      
Sbjct: 301 VETVLTVTAPLSAKIDPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK------ 349
Query: 594 RYEITHTDRYLNLRISDARRADRGEYQA 621
              I H++    LRI   ++ D+G YQ 
Sbjct: 350 --AIGHSESV--LRIESVKKEDKGMYQC 373

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 473 TVQVE----GIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
           TV++E    G P P + W + DG  I  +R+ R    N I  L I      D G  +C A
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSYECVA 277
Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
            N  G ++ K +L   A P      Q  + +   M E +  +    G P PT RWL NG+
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           PL +  R +I        L I+    +D G YQ    N  G   +S  ++V
Sbjct: 335 PLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           + P FI+   D   +      F  Q  G P P+V+W K G ++ S R + I  D     +
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 511 IIHQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFE 561
           +  Q      DE   +C A N  G     A+L +    + P   P I +  Q +   + E
Sbjct: 65  LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK---VVE 121
Query: 562 MGEIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
                 +  + +G P P   W  +    +P TS GR +     R   L+I  +   D+G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQL---RSGGLQIESSEETDQGK 178
Query: 619 YQAHGVNSLG 628
           Y+    NS G
Sbjct: 179 YECVASNSAG 188

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI+   D   +      F  Q  G P P+V+W K G ++ S R + I  D     ++ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
            Q      DE   +C A N  G     A+L +    + P   P I +  Q +   + E  
Sbjct: 67  IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
               +  + +G P P   W  +    +P  S GR +     R   L+I  +   D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
               NS G
Sbjct: 181 CVATNSAG 188

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 15/225 (6%)
Query: 453 PSFIR-ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI-----VTDND 506
           P  IR A  + T      V       G PTP++SW  DG +I ++ R ++     V  + 
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
           +S L I      D G  KC A ++ G +   A+L +   P IR   Q E   +   GE +
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR---QMEKKAIV-AGETL 544
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
            +   +AG P  +  W  +   L    + ++      +   +   R +D+  Y     N 
Sbjct: 545 IVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE--RNSDQATYTCVAKNQ 602
Query: 627 LGEDVASFL---VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDD 668
            G      L   V V  R +P    +    +G+ +TL  S P  D
Sbjct: 603 EGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 42/95 (44%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           ++ P  +  L DTT   D   +F V+  G P P   W KDG  I    + ++  D     
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           L IH+    D G   CT  N AG   +  +L ++A
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 565 IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
           + K  V   G P PTA W  +G+ +T GG+Y+++       L I     +D G Y     
Sbjct: 23  VAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82
Query: 625 NSLGEDVASFLVTV 638
           NS G   +S  +T+
Sbjct: 83  NSAGSVSSSCKLTI 96

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
           F++   +  A+E +       V G P P  +W + G E+   R ++       S L+I  
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGG-SNLLISN 281
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
               D G   C  T +  +    A L +  PP       +   L       I+ + +++G
Sbjct: 282 VTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL---NHPSNLYAYESMDIEFECAVSG 338
Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
            P PT  W+ NG+ +     ++I       NLRI    ++D G YQ    N  G   +S 
Sbjct: 339 KPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSA 395
Query: 635 LVTV 638
            + V
Sbjct: 396 QLIV 399

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 33/209 (15%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS------SRRQRIVTDND 506
           P  +    D    + E      + EG PTP + WYK G  + +      S R  + + + 
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 507 ISTLIIH-QAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
               I+H + +  DEG   C A N  G +++     LE        +Q    ++  +GE 
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD-ASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 566 IKLKVSMA-GMPPPTARWLHNGEPLTS--------GGRYEITHTDRYLNLRISDARRADR 616
             ++     G P PT  W  +G PL          GG+  IT+T           R++D 
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYT-----------RKSDA 177
Query: 617 GEYQAHGVNSLGE---DVASFLVTVTDRP 642
           G+Y   G N +GE   +VA    TV +RP
Sbjct: 178 GKYVCVGTNMVGERESEVAEL--TVLERP 204

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 474 VQVEGIPTPKV----SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
           + V  +PTP      + +K    +FS+      + NDI  + +  A+L D+G+  C A +
Sbjct: 593 IHVGELPTPVCKNLDTLWKLNATMFSN------STNDILIMELKNASLQDQGDYVCLAQD 646
Query: 530 RAG---HSITKARLRLE-APPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWL 583
           R     H + +    LE   PTI   L  Q        +GE I++  + +G PPP   W 
Sbjct: 647 RKTKKRHCVVRQLTVLERVAPTITGNLENQTTS-----IGESIEVSCTASGNPPPQIMWF 701
Query: 584 HNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG-EDVASFLV 636
            + E L       +   +R  NL I   R+ D G Y     + LG   V +F +
Sbjct: 702 KDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human Fibronectin Type Iii Domain Containing Protein 3a Length = 110

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV---EDTELMVSGLEPGWRYQFRI 423
           +RW PP  DGGSP+  Y VE     SP   +  P  V    + E  VS L PG  Y FR+
Sbjct: 28  LRWGPPLVDGGSPISCYSVEM----SPI-EKDEPREVYQGSEVECTVSSLLPGKTYSFRL 82
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            A N +GF   GP SE   +T   +P + PS
Sbjct: 83  RAANKMGF---GPFSEKCDIT--TAPGSGPS 108

>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human Fibronectin Type Iii Domain Containing Protein 3a Length = 110

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV---EDTELMVSGLEPGWRYQFRI 762
           +RW PP  DGGSP+  Y VE     SP   +  P  V    + E  VS L PG  Y FR+
Sbjct: 28  LRWGPPLVDGGSPISCYSVEM----SPI-EKDEPREVYQGSEVECTVSSLLPGKTYSFRL 82
Query: 763 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            A N +GF   GP SE   +T   +P + PS
Sbjct: 83  RAANKMGF---GPFSEKCDIT--TAPGSGPS 108

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
           +  P   P F + + D   +E     F  +VEG P P+V W+KD   +  SR  +I  D 
Sbjct: 35  EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94
Query: 506 DIS-TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           + + +L I +    D+ +  C A N  G +   A L +E
Sbjct: 95  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
           +  P   P F + + D   +E     F  +VEG P P+V W+KD   +  SR  +I  D 
Sbjct: 35  EEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94
Query: 506 DIS-TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           + + +L I +    D+ +  C A N  G +   A L +E
Sbjct: 95  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTA 527
           F  QV G    K +SW+    E  S  +QRI     D+D STL I+ A + D G  KC  
Sbjct: 22  FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 528 TNRAGHSITKA-------RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
           T   G             +L  +  PT   P+++++      GE   +   +    PPT 
Sbjct: 82  TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKE------GEDAVIVCDVVSSLPPTI 132
Query: 581 RWLHNGEP--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG-VNSLGE-DVASFLV 636
            W H G    L    R+ I  ++ YL +R    ++ D G Y+  G + + GE +     V
Sbjct: 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIR--GIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 637 TVTDRPLPPGKAKVV---MTLGKSVTL 660
            V   P    +  +V     LG+SVTL
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTL 216

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 16/119 (13%)
Query: 118 KAKLLMKRDRAAYTE------LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWY 171
           K K+  +  + AY E      L+ AC+ +Q+  R  L MRK+   ++ M++ A  IQ++ 
Sbjct: 746 KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL-MRKK---YMRMRRAAITIQRYV 801
Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLI 230
           R  +  R  A++L   +AA I IQ+  R    M   R+RY  +R ATI +Q   R YL+
Sbjct: 802 RGHQ-ARCYATFLRRTRAAII-IQKFQR----MYVVRKRYQCMRDATIALQALLRGYLV 854

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-----DE 520
           + E  E   +V   P P VSW      ++ +     ++DN  + L  +   ++     DE
Sbjct: 16  QGEDAEVVCRVSSSPAPAVSW------LYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 521 GEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
           G  +C     A   I      + +  PP I +P++  +    E GE +      +G P P
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA-ERGEEMTFSCRASGSPEP 128
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
              W  NG+ +    +Y +  ++  L +R  +   +D G Y     N  GED
Sbjct: 129 AISWFRNGKLIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGED 178

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-----DE 520
           + E  E   +V   P P VSW      ++ +     ++DN  + L  +   ++     DE
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSW------LYHNEEVTTISDNRFAMLANNNLQILNINKSDE 165
Query: 521 GEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
           G  +C     A   I      + +  PP I +P++  +    E GE +      +G P P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA-ERGEEMTFSCRASGSPEP 224
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
              W  NG+ +    +Y +  ++  L +R  +   +D G Y     N  GED
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGED 274

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--N 505
           S A  P  IR   +          F     G P P + W K+G ++  ++ +  V +   
Sbjct: 4   SAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 63
Query: 506 DISTLIIHQA-ALMDEGEIKCTATNRAGHSITK-ARLRL----EAPPTIRLPKQYEDGLL 559
            IS L I    A  D+   +C A N  G +++  A L +    + P    +  Q     +
Sbjct: 64  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 123
Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGE 618
            E+G  + +     G P P   W+ N   +  S  RY +   D +L  +I ++R  D+G+
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFL--QIENSREEDQGK 179
Query: 619 YQAHGVNSLGED 630
           Y+    NS+G +
Sbjct: 180 YECVAENSMGTE 191

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +      G P PT  WL  G+ L++  R+++T T       IS  + +D G Y   
Sbjct: 23  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 623 GVNSLGEDVASFLVTV 638
             NS G+  A F +T+
Sbjct: 83  VENSEGKQEAEFTLTI 98

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +      G P PT  WL  G+ L++  R+++T T       IS  + +D G Y   
Sbjct: 29  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 623 GVNSLGEDVASFLVTV 638
             NS G+  A F +T+
Sbjct: 89  VENSEGKQEAEFTLTI 104

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTA 527
           F  QV G    K +SW+    E  S  +QRI     D+D STL I+ A + D G  KC  
Sbjct: 22  FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 528 TNRAGHSITKA-------RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
           T   G             +L  +  PT   P+++++      GE   +   +    PPT 
Sbjct: 82  TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKE------GEDAVIVCDVVSSLPPTI 132
Query: 581 RWLHNGEP--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG 623
            W H G    L    R+ I  ++ YL +R    ++ D G Y+  G
Sbjct: 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIR--GIKKTDEGTYRCEG 174

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 13/190 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
           A  P  IR   +          F     G P P + W K+G ++  ++ +  V +    I
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 508 STLIIHQA-ALMDEGEIKCTATNRAGHSITK-ARLRL----EAPPTIRLPKQYEDGLLFE 561
           S L I    A  D+   +C A N  G +++  A L +    + P    +  Q     + E
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           +G  + +     G P P   W+ N   +  S  RY +   D +L  +I ++R  D+G+Y+
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFL--QIENSREEDQGKYE 179
Query: 621 AHGVNSLGED 630
               NS+G +
Sbjct: 180 CVAENSMGTE 189

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 419
           LD  V  + W+PP  DGGS V  Y +E R      W   +      T   + GL  G +Y
Sbjct: 22  LDEAVI-LSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRY--TYTTIEGLRAGKQY 78
Query: 420 QFRITAENVVGFSEPGPLSEPLTV 443
           +FRI AEN  G S+P   + P+ +
Sbjct: 79  EFRIIAENKHGQSKPCEPTAPVLI 102

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
           LD  V  + W+PP  DGGS V  Y +E R      W   +      T   + GL  G +Y
Sbjct: 22  LDEAVI-LSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRY--TYTTIEGLRAGKQY 78
Query: 759 QFRITAENVVGFSEPGPLSEPLTV 782
           +FRI AEN  G S+P   + P+ +
Sbjct: 79  EFRIIAENKHGQSKPCEPTAPVLI 102

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLI 511
           P FI+   + +  E        +V G+P P VSWY +G  + S    + IV++  + +LI
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
                  D G   C A NRAG +    +L + A
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDI-ST 509
           AP FI        LE + V+   Q+  IP PK+ W ++   + F++ R  +  DN    T
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
           L+I      D G    +A N AG +    RL + A P   LP
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           S A AP F   L      E   V FT +V G P PK+ W+KDG +I        +  +  
Sbjct: 3   SNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 62
Query: 508 STLIIHQAA--LMDEGEIKCTATNRAGHSITKARLRLEA 544
            T  +H  A  L D+G     A N  G      RL ++A
Sbjct: 63  GTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
           +STL I      D+G   C A++          +R+   P +      E  +   +GE +
Sbjct: 159 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 218
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           ++     G PPP  +W  NG PL S    +  H      L I +    D G Y     N 
Sbjct: 219 RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNP 273
Query: 627 LGEDVASFLVTVTDRPLPP 645
           + ++  S +V++    +PP
Sbjct: 274 ISKEKQSHVVSLVVY-VPP 291

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
           +++R    + W  P +DG SP++ Y++E     +P+ V  +    + T + V GL P   
Sbjct: 30  TVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS 88
Query: 419 YQFRITAENVVG 430
           YQFR+ A N VG
Sbjct: 89  YQFRLCAVNDVG 100

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
           +++R    + W  P +DG SP++ Y++E     +P+ V  +    + T + V GL P   
Sbjct: 30  TVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS 88
Query: 758 YQFRITAENVVG 769
           YQFR+ A N VG
Sbjct: 89  YQFRLCAVNDVG 100

>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           + AP F   L      E   V FT +V G P PK+ W+KDG +I        +  +   T
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 510 LIIHQAA--LMDEGEIKCTATNRAGHSITKARLRLEA 544
             +H  A  L D+G     A N  G      RL ++A
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102

>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human Myosin-Binding Protein C, Fast-Type Length = 118

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
           +  PP IRLP+      + ++GE + L V   G P P   W   G PL +  R  +  +D
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 602 RYLNLRISDARRADRGEYQ 620
                 +  A R+D GEY+
Sbjct: 77  FDTVFFVRQAARSDSGEYE 95

>pdb|1G1C|A Chain A, I1 Domain From Titin Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
           AP     +   T  +     F V+V G P P+  WYK+G +I   R  RI     ++++ 
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--ERSDRIYWYWPEDNVC 62
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            L+I      D   I   A N AG + + A L ++A
Sbjct: 63  ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1101
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-84
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-21
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-80
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-25
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-64
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-22
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-18
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-55
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	9e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-53
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-29
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-45
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-45
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-44
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-50
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-49
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-26
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-47
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-25
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-45
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-44
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-37
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-31
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-44
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-37
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-22
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-42
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-17
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-41
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-41
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-30
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-40
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-40
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-35
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-34
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-20
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-39
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-27
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-39
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-38
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-39
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-37
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-39
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-28
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-38
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-30
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-26
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-38
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-36
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-18
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-37
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-10
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-37
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-22
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-30
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-28
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-36
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-18
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-36
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-33
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-13
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-36
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-15
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-34
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-34
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-34
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-34
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-34
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-22
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-33
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-29
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	2e-33
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	2e-33
2crz_A	110	Fibronectin type-III domain containing protein 3A;	5e-33
2crz_A	110	Fibronectin type-III domain containing protein 3A;	5e-33
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-32
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-18
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-32
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	7e-24
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-11
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-10
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-10
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	4e-32
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-15
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-32
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-32
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-32
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-23
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-31
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-10
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	8e-31
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	8e-31
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-30
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-30
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-17
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	3e-30
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	5e-30
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-30
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-30
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-30
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-30
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-30
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-29
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-16
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	4e-29
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	4e-27
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-29
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-29
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	8e-29
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	9e-29
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	8e-29
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	8e-29
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-28
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-23
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-28
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-28
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-20
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	6e-28
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	6e-28
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-27
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-21
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-27
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-25
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-27
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-21
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-27
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-16
2crm_A	120	Fibronectin type-III domain containing protein 3A;	4e-27
2crm_A	120	Fibronectin type-III domain containing protein 3A;	4e-27
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-27
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-09
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	8e-27
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-26
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-22
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-22
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-22
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	2e-26
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	2e-26
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-26
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	5e-26
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-26
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-26
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-26
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-26
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-14
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-26
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-26
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	5e-26
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	9e-26
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	7e-21
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-26
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-26
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-13
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-26
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-25
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-13
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	2e-25
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	2e-25
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-25
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-21
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-19
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-12
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	5e-25
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-15
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	4e-14
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-13
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-13
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	1e-12
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-25
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-17
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	1e-24
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	1e-24
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-24
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	1e-24
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-24
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-24
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-11
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-24
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-24
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-24
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-13
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-24
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-12
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-24
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-21
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-19
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	7e-24
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	7e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	8e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-11
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-23
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-23
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-23
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-23
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-15
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-23
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-10
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	4e-23
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-22
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	8e-22
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-17
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-23
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-15
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-23
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	8e-23
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-21
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-22
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-22
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-13
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	3e-22
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	5e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-22
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-12
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-22
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-22
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-22
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	5e-22
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	4e-22
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	4e-22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-22
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-21
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-21
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-11
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	8e-21
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	9e-15
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-13
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	9e-13
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-12
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-12
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-20
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-20
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-20
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-20
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-15
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-20
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-20
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-16
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-20
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	8e-20
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-20
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-19
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-16
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-19
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	5e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	5e-08
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	4e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-19
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-10
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-19
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	8e-12
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-19
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-19
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	5e-19
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	5e-19
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	7e-19
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-17
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	6e-14
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	6e-14
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-19
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-16
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-18
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	7e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-06
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	4e-18
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-16
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-15
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-14
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-18
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-17
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-17
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	1e-17
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-17
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-17
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-10
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-17
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-17
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	3e-17
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	3e-17
2ens_A	96	Advanced glycosylation END product-specific recept	5e-17
2ens_A	96	Advanced glycosylation END product-specific recept	2e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-17
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-04
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	9e-17
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-16
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-08
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	1e-16
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	1e-16
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-16
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-16
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	3e-16
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	3e-16
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-14
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-14
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	4e-16
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	4e-16
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	6e-13
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	6e-13
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	5e-16
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-12
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	9e-11
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	6e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-16
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-15
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-12
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	3e-15
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	3e-15
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-15
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-06
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	5e-15
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	5e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-13
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	9e-15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-06
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-14
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-14
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-14
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-14
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	2e-14
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	2e-14
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-14
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	6e-12
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-10
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-08
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	7e-14
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-13
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-04
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-13
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-11
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	1e-13
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	1e-13
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-13
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-13
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	3e-13
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	3e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-12
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	5e-13
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	5e-13
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	6e-13
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	9e-12
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	7e-13
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	5e-11
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	5e-11
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	5e-10
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	7e-13
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-12
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-12
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-11
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	1e-12
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	1e-12
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-12
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-12
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-12
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	2e-12
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-12
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-12
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	2e-12
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	5e-07
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	2e-12
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	8e-12
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-10
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-10
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-12
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-12
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-11
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-11
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-11
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	4e-10
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	3e-12
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	2e-09
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	4e-04
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	6e-04
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	4e-12
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	4e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-11
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	8e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-08
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	2e-11
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	2e-11
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-11
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	3e-11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	3e-11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	5e-11
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	4e-11
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	4e-11
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	6e-11
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	6e-11
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	7e-11
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	7e-11
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	7e-11
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	7e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-08
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-10
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-10
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-10
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	4e-04
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-10
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-10
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	2e-10
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	2e-10
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-10
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	2e-10
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	2e-10
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	2e-10
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-10
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-10
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-10
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-07
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	4e-10
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	4e-10
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	4e-10
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	2e-09
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	5e-10
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	5e-10
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	5e-10
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	2e-09
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	2e-09
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	3e-04
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	3e-04
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	3e-09
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	2e-08
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	3e-07
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	4e-05
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	7e-04
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	8e-04
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-09
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	4e-09
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	5e-09
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	5e-09
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	6e-09
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	7e-09
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-08
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	3e-08
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	3e-08
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	3e-08
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	6e-08
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	3e-04
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	6e-08
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	2e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	1e-07
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	4e-07
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	3e-07
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	4e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	3e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	3e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	6e-06
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	2e-05
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	3e-07
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	3e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	5e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	5e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-06
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-06
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	7e-07
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	9e-07
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-04
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-04
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	1e-06
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	1e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-05
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	2e-06
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	2e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	2e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	2e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	2e-06
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	2e-06
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	5e-06
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-04
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-04
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	2e-06
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	2e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	2e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	2e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	8e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-05
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	1e-05
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	1e-05
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	1e-05
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	1e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	9e-05
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	3e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	3e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	9e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	9e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	9e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	6e-05
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	6e-05
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	6e-05
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	6e-05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	6e-05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	6e-05
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	8e-05
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	1e-04
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	1e-04
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	1e-04
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-04
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-04
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-04
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-04
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	4e-04
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	6e-04
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	7e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  276 bits (708), Expect = 7e-84
 Identities = 75/391 (19%), Positives = 130/391 (33%), Gaps = 69/391 (17%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-------FEIFSSRRQRIVTDN 505
           P  I+ L + T  E+ +V      EG P P+++W +          +     R  +   +
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
             S+L I    L D G   C A +R G       L +E  P     +          G  
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI---YYSWEGNP 117

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHG 623
           I +   +   PP +  W  +   L +      +   T R + L I+     D G Y    
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
            N +G     +++ + D P  P   K++     +  +S+++P+  GG  I +Y V+    
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237

Query: 681 -----------------------------FR---------------------PPGPPGKP 690
                                         R                     P   P  P
Sbjct: 238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP 297

Query: 691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 750
            +     S     F +     + DGG+P+L Y+V++R                   +++ 
Sbjct: 298 SIHGQPSS--GKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILE 354

Query: 751 GLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
            L+    Y+ +ITA N +G+SEP      + 
Sbjct: 355 HLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  100 bits (250), Expect = 1e-22
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR 397
              +   P  P   ++             + +  P+  GG P+  Y V+ +   S  W  
Sbjct: 189 ILALADVPSSPYGVKI---IELSQTTA-KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKI 244

Query: 398 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
              H    T ++++ LEP   Y+ R+ A N  G  +    S+         P   PS
Sbjct: 245 VRSH-GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY---SKIEIFQ--TLPVREPS 295

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 96.4 bits (240), Expect = 3e-21
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
               P   P  P +     S     F +     + DGG+P+L Y+V++R           
Sbjct: 286 FQTLPVREPSPPSIHGQPSS--GKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEK 342

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
                   +++  L+    Y+ +ITA N +G+SEP      + 
Sbjct: 343 KVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  264 bits (676), Expect = 2e-80
 Identities = 91/348 (26%), Positives = 124/348 (35%), Gaps = 54/348 (15%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRI-VTDNDI 507
           A AP F   L +             +V G P P V WY+ G EI     + RI       
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEI 565
             LII      D    +  ATN+ G     A L +E P  I LPK  E         GE+
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-LRISDARRADRGEYQAHGV 624
           + +K+  +G P P   W    + + + G Y++  T  + + +  +   R D G Y     
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPP 684
           N  G D  +  + V D P PP   KV      SV L+W+                     
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWT--------------------- 220

Query: 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
                                     P  DGGS +  Y+VE   T +  W+R       +
Sbjct: 221 -------------------------EPASDGGSKITNYIVEKCATTAERWLRVGQ--ARE 253

Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
           T   V  L     YQFR+ AEN  G S+P   SEP   T +    A  
Sbjct: 254 TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI-TKEDKTRAMN 300

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  106 bits (267), Expect = 2e-25
 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR 397
              +   P PP   ++      + RD   + W  P  DGGS +  Y+VE   T +  W+R
Sbjct: 192 ELDVADVPDPPRGVKVS----DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLR 247

Query: 398 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
                  +T   V  L     YQFR+ AEN  G S+P   SEP   T +    A  
Sbjct: 248 VGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI-TKEDKTRAMN 300

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  214 bits (547), Expect = 4e-64
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 1/191 (0%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           AP   + + D T    E  + + Q+ G P P + WY+ G E+  SR+ ++ +D    TL 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           +      DEG   C ATN  G   T ++L L+A P        ++     +G  ++L V 
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGED 630
             G P P   W H  + L +     I +T+ Y +L + +  R+   G+Y+    N  G  
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

Query: 631 VASFLVTVTDR 641
            A   V + D+
Sbjct: 187 DAILDVEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 93.6 bits (233), Expect = 7e-22
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 9/124 (7%)

Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
            Y     A N VG  E    S  L +   ++                     +   V   
Sbjct: 77  VYTCI--ATNEVGEVE---TSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYI 128

Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-DEGEIKCTATNRAGHSIT 536
           G P P ++W+     + +S    I      + L++         G+ K   +N  G    
Sbjct: 129 GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188

Query: 537 KARL 540
              +
Sbjct: 189 ILDV 192

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           ++GE  +L   + G P P  +W   G+ L    +Y+++   R   L +    + D G Y 
Sbjct: 20  KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79

Query: 621 AHGVNSLGEDVASFLVTVTDRP----LPPGKAKVVMTLGKSVTLS 661
               N +GE   S  + +   P      P K K    +G ++ L 
Sbjct: 80  CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  190 bits (485), Expect = 1e-55
 Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 5/196 (2%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRI-VTDNDI 507
           A AP F   L +             +V G P P V WY+ G EI     + RI       
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED--GLLFEMGEI 565
             LII      D    +  ATN+ G     A L +E P  I LPK  E    +    GE+
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGV 624
           + +K+  +G P P   W    + + + G Y++  T      +  +   R D G Y     
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 625 NSLGEDVASFLVTVTD 640
           N  G D  +  + V D
Sbjct: 182 NRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 99.0 bits (247), Expect = 9e-24
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
            +++ A N  G       +  L V    +    P  +  +    AL  E V   +   G 
Sbjct: 76  VYQVRATNQGGSVS---GTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131

Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
           P P ++W K    I ++   +++      S +  +     D G     A NR G      
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191

Query: 539 RL 540
            L
Sbjct: 192 EL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEIT-HTDRYLNLRISDARRADRGE 618
                  L   + G P P  +W   G+ +   G +Y I      Y  L I+     D   
Sbjct: 17  RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76

Query: 619 YQAHGVNSLGEDVASFLVTVTDRP 642
           YQ    N  G    +  + V    
Sbjct: 77  YQVRATNQGGSVSGTASLEVEVPA 100

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  182 bits (465), Expect = 6e-53
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--RIVTDNDIST 509
           AP+F + L     LE     F   + G P P+VSW++DG  I +S     +I   +  + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
           L I      + G     ATN +G + + A L ++   APP      Q    +    G  +
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQV 121

Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           +L+V + G+P P  ++  +G  + S   ++I+      +L I++A   D G Y  +  NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 627 LGEDVASFLVTV 638
           +G   ++  + V
Sbjct: 182 VGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  115 bits (289), Expect = 2e-29
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A N  G +     +  L V  + +P   P+F++ L   T  +  +V   V+V GIPTP 
Sbjct: 81  KATNGSGQAT---STAELLVKAETAP---PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           V +Y+DG EI SS   +I  + D+ +L+I +A   D G     ATN  G + + A L ++
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHT 600
           +AP   +  +          G     +  ++G P P   W  +G+ +++      +I+ +
Sbjct: 4   QAPTFTQPLQSVV----VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP----GKAKVVMTLGK 656
           D    L I    +A+ G Y     N  G+  ++  + V     PP        + +  G 
Sbjct: 60  DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119

Query: 657 SVTLS 661
            V L 
Sbjct: 120 QVRLQ 124

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  189 bits (481), Expect = 4e-51
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 13/241 (5%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
           +A N +G +     S  LT+         P F            E   F   V G    K
Sbjct: 175 SASNPLGTASS---SAKLTL---SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK 228

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           ++W KD  EI      ++    + +TL + +    D G+  C A+N AG     A+L ++
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
            PP     K+ E   + +  E  + +  + G P     W  +   +    ++ ++  +  
Sbjct: 289 EPPRFI--KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVTL 660
             L + +    D G+Y     N+ G   +S  + V + P     P   + +   G  V L
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHL 404

Query: 661 S 661
            
Sbjct: 405 E 405

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  173 bits (439), Expect = 1e-45
 Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEGIPTP 482
            A NV G       S  L V         P FI+ L  +    +DE   +  ++ G P  
Sbjct: 271 YASNVAGKDS---CSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
           KV WYKD  EI  S + R+     ++ L ++  ++ D G+  C A N AG + +   L++
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
           + PP  R        +    G  + L+  + G PP    W  +   L SG +Y+I   + 
Sbjct: 382 KEPPVFRKKPH---PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVT 659
             ++ I +   AD GEYQ    N +G D     +T+   P              +G+ V 
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST--VVGEEVQ 496

Query: 660 LS 661
           L 
Sbjct: 497 LQ 498

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  173 bits (439), Expect = 1e-45
 Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            AEN VG       S  L +  ++ P   PSF R L D        V F  ++ G    +
Sbjct: 79  KAENSVGAVA---SSAVLVIKERKLP---PSFARKLKDVHETLGFPVAFECRINGSEPLQ 132

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL- 542
           VSWYKDG  +      +    ++++TL I Q      G+  C+A+N  G + + A+L L 
Sbjct: 133 VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS 192

Query: 543 --EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
             E PP   L       +   +GE    K  + G  P    W  +   +  GG Y++T  
Sbjct: 193 EHEVPPFFDLKPV---SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 249

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP--LPPGKAKVVMTLGKSV 658
           +    L +    + D G+Y  +  N  G+D  S  + V + P  +   +   ++   +  
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309

Query: 659 TLS 661
              
Sbjct: 310 RYE 312

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  169 bits (430), Expect = 2e-44
 Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 10/217 (4%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
            P FI  L    A   E +    +V+G P  +++WYK+  ++ S+   ++   N++++L+
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKL 568
           I++    D GE  C A N  G   + A L ++    PP+     +    +   +G  +  
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD---VHETLGFPVAF 121

Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
           +  + G  P    W  +GE L      + +       L+I    ++  G+Y     N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181

Query: 629 EDVASFLVTVTDRPLPP----GKAKVVMTLGKSVTLS 661
              +S  +T+++  +PP        V + LG+S T  
Sbjct: 182 TASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  167 bits (425), Expect = 8e-44
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 13/218 (5%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A N  G +     S  L V         P F +  H    L+   V    +++G P  +
Sbjct: 365 EAHNAAGSAS---SSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 415

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           VSW+KD  E+ S ++ +I+++N ++++ I      D GE +C A+N  G       + L+
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
           APP           ++   GE ++L+ ++ G  P +  W  +   +        I++++ 
Sbjct: 476 APPRFVKKLSDISTVV---GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
              L+ S A  A+ G+Y     N  G       ++V +
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  177 bits (450), Expect = 7e-50
 Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 7/214 (3%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           A P F            E   F   V G    K++W KD  EI      ++    + +TL
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
            + +    D G+  C A+N AG     A+L ++ PP     K+ E   + +  E  + + 
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFI--KKLEPSRIVKQDEHTRYEC 121

Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
            + G P     W  +   +    ++ ++  +    L + +    D G+Y     N+ G  
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 631 VASFLVTVTDRPL---PPGKAKVVMTLGKSVTLS 661
            +S  + V + P+    P   +     G  V L 
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVET--LKGADVHLE 213

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  175 bits (446), Expect = 3e-49
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 13/220 (5%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEG 478
           Q+   A NV G       S  L V         P FI+ L  +    +DE   +  ++ G
Sbjct: 75  QYTCYASNVAGKDS---CSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGG 125

Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
            P  KV WYKD  EI  S + R+     ++ L ++  ++ D G+  C A N AG + +  
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185

Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
            L+++ PP  R      + L    G  + L+  + G PP    W  +   L SG +Y+I 
Sbjct: 186 SLKVKEPPVFRKKPHPVETLK---GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242

Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
             +   ++ I +   AD GEYQ    N +G       +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  107 bits (270), Expect = 8e-26
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A N  G +     S  L V         P F +  H    L+   V    +++G P  +
Sbjct: 173 EAHNAAGSAS---SSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 223

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           VSW+KD  E+ S ++ +I+++N ++++ I      D GE +C A+N  G       + L+
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

Query: 544 A 544
           A
Sbjct: 284 A 284

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  167 bits (424), Expect = 3e-47
 Identities = 52/260 (20%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNG 586
           AT  A  S    R      P ++ P           G  + +   +   P  T  W  +G
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPVAVY----TWEGNQVNITCEVFAYPSATISWFRDG 56

Query: 587 EPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           + L S      +I +T     L ++     D G Y    VN +G++   F++   D P  
Sbjct: 57  QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS 116

Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
           P     V     +  +                                            
Sbjct: 117 PS-IDQVEPYSSTAQVQ------------------------------------------- 132

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE---DTELMVSGLEPGWRYQFR 761
              ++ PE  GG P+L Y  E R  G   W        E   +  + + GL+P   Y  R
Sbjct: 133 ---FDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189

Query: 762 ITAENVVGFSEPGPLSEPLT 781
           + A N  G  E    SE  T
Sbjct: 190 LAALNGKGLGEISAASEFKT 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  102 bits (257), Expect = 7e-25
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 333 VGTD---LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR 389
           +G +      V    P  P   Q+ P S +       ++++ PE  GG P+L Y  E R 
Sbjct: 99  IGQESLEFILVQADTPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRA 153

Query: 390 TGSPYWVRASPHMVE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
            G   W        E   +  + + GL+P   Y  R+ A N  G  E    SE  T
Sbjct: 154 VGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
           +   +    R        ++        E  +V  T +V   P+  +SW++DG  + SS 
Sbjct: 4   AAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN 63

Query: 498 RQR--IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
                I      S L +   +  D G   CTA NR G    +  L     P
Sbjct: 64  YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  161 bits (409), Expect = 1e-45
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 6/190 (3%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           +  +F   +      + E  E   +V   P P VSW     E+ +    R     + + L
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNL 59

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKA--RLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
            I      DEG  +C     A   I      + +  PP I +P++  +      GE +  
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER-GEEMTF 118

Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
               +G P P   W  NG+ +    +Y +  ++    L + +   +D G Y     N  G
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAG 176

Query: 629 EDVASFLVTV 638
           ED     + V
Sbjct: 177 EDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 67.5 bits (165), Expect = 6e-13
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--SGGRYEITHTD 601
           +  T R     ++   F+ GE  ++   ++  P P   WL++ E +T  S  R+ +   +
Sbjct: 1   SMLTFREVVSPQE---FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 57

Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVAS--FLVTVTDRP---LPPGKAKVVMTLGK 656
              NL+I +  ++D G Y+  G      ++     +V V   P   +P          G+
Sbjct: 58  ---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114

Query: 657 SVTLS 661
            +T S
Sbjct: 115 EMTFS 119

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  173 bits (440), Expect = 1e-44
 Identities = 84/435 (19%), Positives = 139/435 (31%), Gaps = 89/435 (20%)

Query: 390 TGSP----YWVR-ASPHMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPL 441
           TG+P     W++        ++ L +  ++    G  YQ      N    +E    S  L
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGM-YQCF--VRNDRESAE---ASAEL 421

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
            +  +  P   P   +A  + T      V       G PTP++SW  DG +I ++ R ++
Sbjct: 422 KLGGRFDP---PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV 478

Query: 502 -----VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED 556
                V  + +S L I      D G  KC A ++ G +   A+L +   P IR  ++   
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA- 537

Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRAD 615
                 GE + +   +AG P  +  W  +   L    + ++        L I +  R +D
Sbjct: 538 ---IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSD 591

Query: 616 RGEYQAHGVNSLGEDV-ASFLVTVTDRP--LPPGKAKVVMTLGKSVTLSWSEPEDDGGCK 672
           +  Y     N  G     S  V V   P  +P    +    +G+ +TL  S         
Sbjct: 592 QATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS--------- 642

Query: 673 IGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP 732
                         PG     P           I W       G  +             
Sbjct: 643 -------------VPGGDL--P---------LNIDW----TLDGQAIS----------ED 664

Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
             +  S      + L +  +E      F   A N+ G  +    + PL V         P
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF---TTPLNVY------VPP 715

Query: 793 SFIRALHDTTALEDE 807
            +I    D    +  
Sbjct: 716 RWILEPTDKAFAQGS 730

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  160 bits (405), Expect = 3e-40
 Identities = 77/483 (15%), Positives = 134/483 (27%), Gaps = 110/483 (22%)

Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
           + C+I                      V  + W     D             +       
Sbjct: 158 IKCLIPSFVADF---------------VEVVSWH---TDEEENYFPGAEYDGKY------ 193

Query: 397 RASPHMVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
                ++   EL +  + P      ++   ++ +        ++   V  +   +A P  
Sbjct: 194 ----LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249

Query: 456 I--RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLI 511
           +        T      +      +G P P   WYK        +   +         TLI
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 309

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           I  A + D G+  C   N  G    +  L + AP + ++          + G        
Sbjct: 310 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQ 366

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
             G P  T  W+ +G+ +                LRI   ++ D+G YQ    N      
Sbjct: 367 YTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAE 416

Query: 632 ASFLVTVTDRPLPP----GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPP 687
           AS  + +  R  PP       +  M  G SV L          C                
Sbjct: 417 ASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK---------CV-------------AG 454

Query: 688 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL 747
           G P   P           I W       G      +  + R     +V  +  +V  + L
Sbjct: 455 GNP--TP----------EISW----ELDGKK----IANNDRYQVGQYVTVNGDVV--SYL 492

Query: 748 MVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL 804
            ++ +     G    ++  A++ VG +E    S  L V           +IR +     +
Sbjct: 493 NITSVHANDGG---LYKCIAKSKVGVAE---HSAKLNVY-------GLPYIRQMEKKAIV 539

Query: 805 EDE 807
             E
Sbjct: 540 AGE 542

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  151 bits (382), Expect = 1e-37
 Identities = 50/245 (20%), Positives = 86/245 (35%), Gaps = 24/245 (9%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A++ VG +E    S  L V           +IR +     +  E +  T  V G P   
Sbjct: 508 IAKSKVGVAE---HSAKLNVY-------GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDS 557

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-DEGEIKCTATNRAGHSITK-ARLR 541
           + W +D   +  +R+Q++  +    TLII       D+    C A N+ G+S      ++
Sbjct: 558 IVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ 614

Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHT 600
           +   P I      E     ++G+ + L  S+ G   P    W  +G+ ++       +  
Sbjct: 615 VMVLPRIIPFAFEE--GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV 672

Query: 601 DRYL-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGK 656
            R    L I     +  G +  H  N  G    +  + V   P   L P         G 
Sbjct: 673 GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAF--AQGS 730

Query: 657 SVTLS 661
              + 
Sbjct: 731 DAKVE 735

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  130 bits (328), Expect = 5e-31
 Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 20/227 (8%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQVEGIPTP 482
            A+N  G+S  G L   + V         P  I  A  +  A   + +     V G   P
Sbjct: 598 VAKNQEGYSARGSLE--VQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649

Query: 483 -KVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
             + W  DG  I               S L I        G   C A N AGH      L
Sbjct: 650 LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
            +  PP   L    +    F  G   K++    G P P   W           + ++  +
Sbjct: 710 NVYVPPRWILEPTDKA---FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DLKKS 765

Query: 601 DRYL----NLRISDARRADRGEYQAHGVNSLGEDVASF-LVTVTDRP 642
           D        L + + ++ + G Y    +N +G  +++  +++V    
Sbjct: 766 DNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  113 bits (283), Expect = 1e-25
 Identities = 44/271 (16%), Positives = 74/271 (27%), Gaps = 45/271 (16%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEG 478
            F   A    G       S+ L      +    P F++   +          E   +  G
Sbjct: 13  LFAAVALIACG-------SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASG 65

Query: 479 IPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMD------EGEIKCTATNRA 531
            P P++ W + DG  +      R ++ +    L+       D           C A N+ 
Sbjct: 66  NPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEVHAQVYACLARNQF 123

Query: 532 GHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK---VSMAGMPPPTARWLHNGE 587
           G  I++   +R             E       G    +K    S          W  + E
Sbjct: 124 GSIISRDVHVRAVVAQYYEADVNKEHV---IRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180

Query: 588 PL-----TSGGRYEITHTDRYLNLRISDARRAD-RGEYQAHGVNSLGEDV---ASFLVTV 638
                     G+Y +  +     L I +    D    YQ    + L  +    A+    V
Sbjct: 181 ENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237

Query: 639 TDRPLPPGKAKVVMTL---------GKSVTL 660
              P+     KVV              ++ L
Sbjct: 238 ITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  100 bits (251), Expect = 9e-22
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 16/205 (7%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-LGYLVEHRRTGSPYWVRASPHMVED 405
           P   P    + P+      T+    P  D   P+ + + ++ +       +  S      
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGD--LPLNIDWTLDGQAISEDLGITTSRVGRRG 676

Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL 465
           + L +  +E      F   A N+ G  +    + PL V         P +I    D    
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQF---TTPLNVY------VPPRWILEPTDKAFA 727

Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGE 522
           +    +   + +G P P+V+W K   +     +    +DN   +  TL +      +EG 
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787

Query: 523 IKCTATNRAGHSITKAR-LRLEAPP 546
             C A N  G  ++    + ++A  
Sbjct: 788 YLCEAINGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.5 bits (201), Expect = 8e-16
 Identities = 36/310 (11%), Positives = 70/310 (22%), Gaps = 58/310 (18%)

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRL--EAPPTIRLPKQYEDGLLFEMGEIIK 567
           + +    L         A    G     A      +  P     K+  + + F      +
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFL--KEPTNRIDFSNSTGAE 58

Query: 568 LKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYL---NLRISDAR-RADRGEYQAH 622
           ++   +G P P   W+  +G  +          +D  L     R  D R       Y   
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118

Query: 623 GVNSLGEDVA-SFLVTVTDRPLPPGK-AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
             N  G  ++    V             K  +  G S  +          C         
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK---------C--------- 160

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
              P                  V  + W     D             +            
Sbjct: 161 -LIPSFVADF------------VEVVSW---HTDEEENYFPGAEYDGKY----------L 194

Query: 741 MVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI--RA 797
           ++   EL +  + P      ++   ++ +        ++   V  +   +A P  +    
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254

Query: 798 LHDTTALEDE 807
               T     
Sbjct: 255 FDMKTYSGSS 264

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  162 bits (411), Expect = 1e-44
 Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 14/225 (6%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
            +R  A +  G        +    T         +F   +      + E  E   +V   
Sbjct: 74  IYRCQATDAKG--------QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125

Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA- 538
           P P VSW     E+ +    R     + + L I      DEG  +C     A   I    
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184

Query: 539 -RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI 597
             + +  PP I +P++  +      GE +      +G P P   W  NG+ +    +Y +
Sbjct: 185 IIVIVNVPPAISMPQKSFNATAER-GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243

Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
             ++    L + +   +D G Y     N  GED     + V  + 
Sbjct: 244 KGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  141 bits (358), Expect = 2e-37
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 14/220 (6%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
            A      +L        E   FT    G P     +   G +I S++R  +  +   S 
Sbjct: 2   MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
           L I+ A + D G  +C AT+  G +      L +    T R  +       F+ GE  ++
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR--EVVSP-QEFKQGEDAEV 118

Query: 569 KVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
              ++  P P   WL++ E +   S  R+ +   +   NL+I +  ++D G Y+  G   
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVE 175

Query: 627 LGEDV--ASFLVTVTDRP---LPPGKAKVVMTLGKSVTLS 661
              ++     +V V   P   +P          G+ +T S
Sbjct: 176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 17/154 (11%)

Query: 401 HMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
            M+ +  L +  +     G  Y+                  E             P+   
Sbjct: 148 AMLANNNLQILNINKSDEG-IYRCE--GRVEAR-------GEIDFRDIIVIVNVPPAISM 197

Query: 458 A--LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQA 515
                + TA   E++ F+ +  G P P +SW+++G  I  + +  +   N  + L +   
Sbjct: 198 PQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNI 255

Query: 516 ALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
              D G   C ATN+AG    +A L++       
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  151 bits (383), Expect = 9e-42
 Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 16/205 (7%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI-VTDNDIST 509
             P F R   D T +      F  Q  G P PK+ W K G ++ + R + I   D   S 
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64

Query: 510 LIIHQAALM-DEGEIKCTATNRAGHSITKARLR-------LEAPPTIRLPKQYEDGLLFE 561
           L I       DE   +C A+N  G      RL            PTI +  Q +     E
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV---E 121

Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLT---SGGRYEITHTDRYLNLRISDARRADRGE 618
                 +  + +G P P   W  +  P+    + GR +   ++    L+I  +  +D+G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 619 YQAHGVNSLGEDV-ASFLVTVTDRP 642
           Y+    NS G    A   + V    
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 99.5 bits (248), Expect = 9e-24
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQ-RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
            A N VG      +S  LTV  + + P   P+                       G P P
Sbjct: 82  VASNNVGEIS---VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP 138

Query: 483 KVSWYKDGFEIFSSR---RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KA 538
           +++W+KD   + +S    R + +    I  L I Q+   D+G+ +C ATN AG   +  A
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPA 198

Query: 539 RLRLEAPP 546
            L +    
Sbjct: 199 NLYVRGTK 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 68.7 bits (168), Expect = 4e-13
 Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 15/130 (11%)

Query: 543 EAPPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
           E PP   R P           G +        G P P   W   G+ +++     I   D
Sbjct: 4   ETPPRFTRTPVD----QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD 59

Query: 602 RYLN-LRISDARRA-DRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA--------KVV 651
              + LRI   R   D   Y+    N++GE   S  +TV      P             V
Sbjct: 60  GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV 119

Query: 652 MTLGKSVTLS 661
           +   ++ T+ 
Sbjct: 120 VERTRTATML 129

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  151 bits (384), Expect = 6e-41
 Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 14/221 (6%)

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV 484
                G      ++  + +           F  A       E E       V     P +
Sbjct: 81  VTAEDGTQSEATVN--VKIF------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132

Query: 485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE- 543
            W   G ++   +  R +  ++ + L I      DEG  +C     A   I    +++  
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

Query: 544 -APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH--T 600
             PPT++  +   +      G+ + L     G P PT  W  +GEP+ +    +  H  +
Sbjct: 192 NVPPTVQARQSIVNATANL-GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
           D    L I +  + D  EY     N  GE  AS  + V  +
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  120 bits (302), Expect = 4e-30
 Identities = 50/220 (22%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPT-PKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
                          E   F  QV G      +SW+    E  S  +QRI     D+D S
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           TL I+ A + D G  KC  T   G        +++      +          F+ GE   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGEDAV 119

Query: 568 LKVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           +   +    PPT  W H G  +      R+ +   +    L+I   ++ D G Y+  G  
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRI 176

Query: 626 SLGEDV--ASFLVTVTDRP---LPPGKAKVVMTLGKSVTL 660
               ++      V V   P              LG+SVTL
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  147 bits (373), Expect = 2e-40
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 29/207 (14%)

Query: 461 DTTALEDEKVEFTVQVEGI----------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
            + AL    ++     EGI             KV+W  +G  I  S R +     +   L
Sbjct: 2   SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF---------- 560
            I++    D+G+      +          L  +A        Q                 
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121

Query: 561 --------EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDA 611
                   + G+ + L  ++ G PPP   WL N + L       +     R     I+  
Sbjct: 122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV 181

Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
             AD G+Y     N  G + + F V+V
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 99.2 bits (247), Expect = 1e-23
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 1/120 (0%)

Query: 427 NVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW 486
           +   + E     + L          A          T  E + +  T  V G P P+VSW
Sbjct: 92  SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151

Query: 487 YKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
            K+   +  +    +  +    +   I+  +  D G+      N+ G   +   + +  P
Sbjct: 152 LKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 563 GEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
            E I+L   +   +      W HNG  +    R +   T   + L+I++    D+G+Y  
Sbjct: 17  AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
              +       +  ++         + + +
Sbjct: 77  ELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  152 bits (386), Expect = 4e-40
 Identities = 54/276 (19%), Positives = 92/276 (33%), Gaps = 27/276 (9%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
           TI W          +     + R             ++    L +S L+PG    +R +A
Sbjct: 152 TIHW----QKNQQDLNPIPGDSRVV-----------VLPSGALQISRLQPGDSGVYRCSA 196

Query: 426 ENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS 485
            N             + +           F++   +  A+E +       V G P P  +
Sbjct: 197 RNPASTRTGNEAE--VRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254

Query: 486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
           W +    I    ++  +     S L+I      D G   C  T +  +    A L +  P
Sbjct: 255 WLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP 312

Query: 546 PTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
           P     P              I+ + +++G P PT  W+ NG+ +     ++I       
Sbjct: 313 PWFLNHPSNLY----AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--- 365

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
           NLRI    ++D G YQ    N  G   +S  + V  
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  139 bits (351), Expect = 2e-35
 Identities = 47/235 (20%), Positives = 77/235 (32%), Gaps = 21/235 (8%)

Query: 437 LSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-- 494
           +S    V      A    F+      TA   + V    +V G P P + W K+  ++   
Sbjct: 110 ISRTAKVMV----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI 165

Query: 495 -SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPK 552
               R  ++       L I +    D G  +C+A N A       A +R+ + P +    
Sbjct: 166 PGDSRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222

Query: 553 QYEDG---LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS 609
            +      ++   G+   L+  ++G PPP+  WL   E +    +          NL IS
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLIS 280

Query: 610 DARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVTLS 661
           +    D G Y            AS  +TV   P     P            +   
Sbjct: 281 NVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA--YESMDIEFE 333

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  134 bits (339), Expect = 7e-34
 Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIV 502
            +      +  F+    D   +    V      E     P + W KDG  +      R  
Sbjct: 13  HHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQ 72

Query: 503 TDND----ISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYED 556
              +    I  ++  +    DEG  +C A+     SI    A++ +  P       +   
Sbjct: 73  QLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE--- 129

Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARR 613
            +   MG+ + LK  + G P PT  W  N + L       R  +  +     L+IS  + 
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG---ALQISRLQP 186

Query: 614 ADRGEYQAHGVNSLGEDVA-SFLVTVTDRPLPPGKAKVVM-------TLGKSVTL 660
            D G Y+    N           V +   P    +   +          GK   L
Sbjct: 187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVL 241

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 94.1 bits (234), Expect = 2e-20
 Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
                         S  LTV         P F+    +  A E   +EF   V G P P 
Sbjct: 293 VVTYKNENIS---ASAELTVL------VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           V+W K+G  +  S   +IV     S L I      DEG  +C A N AG++ + A+L + 
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGG---SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

Query: 544 AP 545
            P
Sbjct: 401 KP 402

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 38/289 (13%), Positives = 68/289 (23%), Gaps = 62/289 (21%)

Query: 527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARWLHN 585
             +    S                        +   G  + L  S       P  +W  +
Sbjct: 3   WGSELESSHHHHHHGGRRSLHFVSEPS---DAVTMRGGNVLLNCSAESDRGVPVIKWKKD 59

Query: 586 GEPLTSGGRYEIT----HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
           G  L  G           +    N+  S   + D G YQ          + S    V   
Sbjct: 60  GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119

Query: 642 PLPPGKAK---VVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPS 698
                 ++   +   +G +V L          C+               G P        
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLK---------CE-------------VIGDPMP------ 151

Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
                 TI W          +     + R             ++    L +S L+PG   
Sbjct: 152 ------TIHW----QKNQQDLNPIPGDSRVV-----------VLPSGALQISRLQPGDSG 190

Query: 759 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDE 807
            +R +A N             + +           F++   +  A+E +
Sbjct: 191 VYRCSARNPASTRTGNEAE--VRILSDPGLHRQLYFLQRPSNVIAIEGK 237

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  150 bits (381), Expect = 1e-39
 Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 12/234 (5%)

Query: 410 VSGLEPGWRYQFRITAENVVG--FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALED 467
           V+  +    Y++  TA+N                           P       D  A   
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227

Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLIIHQAALMDEGEIKC 525
           +           P    +++K+G ++  +   RI   N  S   L+       DEG   C
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287

Query: 526 TATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
              N  G       +L + + P     ++ E  ++ + G+ + +   + G+P P   W H
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYE--QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345

Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           N +PL+  GR  +T +     L I   +  D+G Y     N  G+     LV V
Sbjct: 346 NAKPLSG-GRATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  113 bits (285), Expect = 4e-27
 Identities = 36/243 (14%), Positives = 67/243 (27%), Gaps = 34/243 (13%)

Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQ 499
           L V         P       +    E+        +EG     K SW KDG         
Sbjct: 1   LPVD------KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN 54

Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGL 558
             +  ++  +L+  +    DEG  +C A   AG + ++    R         P +  +  
Sbjct: 55  AALRKDE-GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS--PAKTHEKT 111

Query: 559 LFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLRISDAR 612
             E G   +L   +    P P   W                   R       NL  +   
Sbjct: 112 PIE-GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADV-TDFDRRITAGPDGNLYFTIVT 169

Query: 613 RADR---GEYQAHGVNSLGED---VASFLVTVTDRPLPPGKAK---------VVMTLGKS 657
           + D     +Y     N+  ++   +  + +    +     K +         ++   G  
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229

Query: 658 VTL 660
             +
Sbjct: 230 TMI 232

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  148 bits (374), Expect = 2e-39
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%)

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           P   P F+  L       +  V    +V  I     + WYKD  EI    +      + I
Sbjct: 4   PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGI 60

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
            TL+I + +  D G  +    +  G   ++ +L  EA   + +    +   +      +K
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKK---IALSATDLK 117

Query: 568 LKVSMAGM----------PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG 617
           ++ +  G+                W HNG  +    R +   T   + L+I++    D+G
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 177

Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
           +Y     +       +  ++         + + +
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 211

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  145 bits (366), Expect = 3e-38
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 38/248 (15%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
            + +  ++  G  +       L         A    +  +    AL    ++     EGI
Sbjct: 75  IYEVILKDDRGKDK---SRLKLVDE------AFKELMMEVCKKIALSATDLKIQSTAEGI 125

Query: 480 ----------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
                        KV+W  +G  I  S R +     +   L I++    D+G+      +
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185

Query: 530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM------------------GEIIKLKVS 571
                     L  +A        Q                           G+ + L  +
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 245

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
           + G PPP   WL N + L S     +     R     I+    AD G+Y     N  G +
Sbjct: 246 VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 305

Query: 631 VASFLVTV 638
            + F V+V
Sbjct: 306 TSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  100 bits (250), Expect = 4e-23
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 1/120 (0%)

Query: 427 NVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW 486
           +   + E     + L          A          T  E + +  T  V G P P+VSW
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256

Query: 487 YKDGFEIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
            K+   + S     +  +    +   I+  +  D G+      N+ G   +   + +  P
Sbjct: 257 LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  147 bits (373), Expect = 3e-39
 Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 17/233 (7%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRS-PAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
            +   A+N VG      +   LTV  +   P+  P+                       G
Sbjct: 78  VYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134

Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK- 537
            P P+++W+KD   +  S     +       L I  +   D+G+ +C ATN AG   +  
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP 194

Query: 538 ARLRL---EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
           A L +      P   +     + +    G  + +     G P P  +W+   E LT    
Sbjct: 195 ANLYVRVQNVAPRFSILPMSHEIMP---GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251

Query: 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
             +          +      D   Y    ++SLG   A   +TV   P    K
Sbjct: 252 MPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  141 bits (358), Expect = 3e-37
 Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 19/225 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDIST 509
             P FI+   D   +      F  Q  G P P+V+W K G ++ S R + I   ++  + 
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 510 LIIHQAALM-DEGEIKCTATNRAGHSITKARL-------RLEAPPTIRL-PKQYEDGLLF 560
           L I       DE   +C A N  G     A+L            P I + P+        
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV----V 120

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           E      +  + +G P P   W  +  P+            R   L+I  +   D+G+Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180

Query: 621 AHGVNSLGEDV-ASFLVTVTDRPLPP----GKAKVVMTLGKSVTL 660
               NS G    +   + V  + + P          +  G +V +
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  142 bits (361), Expect = 5e-39
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
             AP     L    AL +E   F   VE  P P++SW ++   I     +  + +N    
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-QL 63

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
           L I      D+G   CTA N  G ++     L+++  P I  P      +    G    L
Sbjct: 64  LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI---NVKIIEGLKAVL 120

Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
             +  G P P+  W+     L    R  +       +LRI + ++ D G+Y+    NSLG
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAV-LESG--SLRIHNVQKEDAGQYRCVAKNSLG 177

Query: 629 EDVASF 634
              +  
Sbjct: 178 TAYSKL 183

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 95.2 bits (237), Expect = 2e-22
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 12/145 (8%)

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
                 L +  +E      +  TA N VG          +           P   R   +
Sbjct: 58  RENGQLLTILSVEDSDDGIYCCTANNGVG--------GAVESCGALQVKMKPKITRPPIN 109

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
              +E  K        G P P VSW K    +  + R  ++      +L IH     D G
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAG 166

Query: 522 EIKCTATNRAGHSITK-ARLRLEAP 545
           + +C A N  G + +K  +L +E  
Sbjct: 167 QYRCVAKNSLGTAYSKLVKLEVEVF 191

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  148 bits (374), Expect = 1e-38
 Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 16/241 (6%)

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE--PLTVTYQRSPAAAPSFI-R 457
                  L ++  E      +   A + + F      S+   L++  + +   APS   +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL 517
              DT AL  + V       G P P++ W K       S+  + ++      L I     
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLD----GSQTSKWLSSE--PLLHIQNVDF 266

Query: 518 MDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP 577
            DEG  +C A N  G    + R+ + A P              ++G  ++     +G P 
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD---TEADIGSDLRWSCVASGKPR 323

Query: 578 PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637
           P  RWL +G+PL S  R E++       LR S     D G YQ    N  G   AS  +T
Sbjct: 324 PAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379

Query: 638 V 638
           V
Sbjct: 380 V 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  116 bits (293), Expect = 4e-28
 Identities = 49/230 (21%), Positives = 71/230 (30%), Gaps = 27/230 (11%)

Query: 452 APSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
            P F      T   E   +EKV  T +    P     W  +G E+      R        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-D 62

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
            +I +     D G  +C ATN  G  ++ +A LR           +  D +    G  + 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEF--SAEERDPVKITEGWGVM 120

Query: 568 LKVSM-AGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG 623
              S     P  + RWL N  P      G R+    T    NL I+    +D G Y    
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG---NLYIAKTEASDLGNYSCFA 177

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAK-------------VVMTLGKSVTL 660
            + +     S     +   L    A+                  G+ VTL
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTL 227

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  105 bits (264), Expect = 2e-24
 Identities = 42/251 (16%), Positives = 68/251 (27%), Gaps = 28/251 (11%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP 482
            A N  G      +S   ++ +                    E   V FT       P  
Sbjct: 80  VATNARGTV----VSREASLRFGFLQ---EFSAEERDPVKITEGWGVMFTCSPPPHYPAL 132

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----- 537
              W  + F  F     R         L I +    D G   C AT+             
Sbjct: 133 SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192

Query: 538 ARLRLEAPPTIRLPKQYEDGLLFEM----GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG 593
           ++L L A    +     +     +     G+++ L+    G P P  +W       TS  
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK- 251

Query: 594 RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKV 650
                 ++    L I +    D G Y+    N  G D     + +  +P           
Sbjct: 252 ---WLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVI--TDT 304

Query: 651 VMTLGKSVTLS 661
              +G  +  S
Sbjct: 305 EADIGSDLRWS 315

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            AEN+ G          + +       A P ++  + DT A     + ++    G P P 
Sbjct: 275 EAENIKGRDT---YQGRIIIH------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPA 325

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           V W +DG  + S  R  +        L   +  L D G  +C A N+ G     A L ++
Sbjct: 326 VRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

Query: 544 A 544
           A
Sbjct: 382 A 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  146 bits (370), Expect = 3e-38
 Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 12/240 (5%)

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA--AAPSFIRA 458
              E   L ++ +E      +     N V   +      PL +              ++ 
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF 211

Query: 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM 518
                A +   V+      G P P + W +   +  + + +R  ++     L I      
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN---GILEIPNFQQE 268

Query: 519 DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
           D G  +C A N  G ++ K +L   A P           +   M E +  +    G P P
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN---DIHVAMEESVFWECKANGRPKP 325

Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           T RWL NG+PL +  R +I        L I+    +D G YQ    N  G   +S  ++V
Sbjct: 326 TYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  123 bits (309), Expect = 3e-30
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 449 PAAAPSFIRALHDTT---ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
           P + P F++           E++KV+ + +V+G P P + W  +G ++      R    +
Sbjct: 2   PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGE 564
             S LI +     D G  +C ATN  G  ++ +A+L+           +    +    G+
Sbjct: 62  G-SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF--KTRTRSTVSVRRGQ 118

Query: 565 IIKLK-VSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
            + L           +  W+ N  P      R+    T    NL I+   ++D G Y   
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVGNYTCV 175

Query: 623 GVNSLGED---VASFLVTVTDRPLPPGKAKVVMT---------LGKSVTL 660
             N++           + + +  +       +            G +V L
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  112 bits (282), Expect = 1e-26
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 34/254 (13%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQV-EGIPT 481
            A N  G      +S    + +    A   +F  R     +    + +            
Sbjct: 81  IATNSFGTI----VSREAKLQF----AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 132

Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH-------- 533
              +W  + +  +   R+ +  +     L I +    D G   C  TN   +        
Sbjct: 133 LSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPT 190

Query: 534 --SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLT 590
              +    +  E  P I +       +  E G  +KL+    G P PT  W   +G+P+ 
Sbjct: 191 PLILRNDGVMGEYEPKIEVQFPET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248

Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGK 647
              R   ++      L I + ++ D G Y+    NS G++VA   +T   +P        
Sbjct: 249 RKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII-- 302

Query: 648 AKVVMTLGKSVTLS 661
             + + + +SV   
Sbjct: 303 NDIHVAMEESVFWE 316

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  143 bits (361), Expect = 9e-38
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 24/241 (9%)

Query: 420 QFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV 476
            +     +  G +    + E      +            +++      LE  +V F +Q 
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 477 E-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATNRAGH 533
           E      KV++  +  EIF   + ++  D +  I  + + +    DEG       +    
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191

Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEM---------------GEIIKLKVSMAGMPPP 578
           + +   L  +    ++   +++                         + LK  +A +   
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251

Query: 579 TA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637
           T   W  +   ++   +++    D    L I++  + D G Y+    +  G+D +   + 
Sbjct: 252 THIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

Query: 638 V 638
            
Sbjct: 310 D 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  138 bits (349), Expect = 4e-36
 Identities = 25/213 (11%), Positives = 65/213 (30%), Gaps = 13/213 (6%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
              P     + +        + F       P  + SW KD      S R  + +  + + 
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF--------- 560
           +      + D G   C  T+  G + +      E    + L  +++   +          
Sbjct: 60  MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119

Query: 561 -EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT--DRYLNLRISDARRADRG 617
            E G++     +          ++ N + +  G +Y++        + + +   +  D G
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179

Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV 650
            Y     +    + ++ ++          +A+ 
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 212

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 85.8 bits (212), Expect = 3e-18
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 420 QFRITAENVVGFSE----------PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
            +    ++    +                E      +      P F+  L       +  
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECN 238

Query: 470 VEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
           V    +V  I     + WYKD  EI    +      + I TL+I + +  D G  +    
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILK 296

Query: 529 NRAGHSITKARLRLEA 544
           +  G   ++ +L  EA
Sbjct: 297 DDRGKDKSRLKLVDEA 312

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  138 bits (350), Expect = 2e-37
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 21/207 (10%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--I 507
               F ++      LE  +V F +Q E      KV++  +  EIF   + ++  D +  I
Sbjct: 1   GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM----- 562
             + + +    DEG       +    + +   L  +    ++   +++            
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 563 ----------GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
                        + LK  +A +   T   W  +   ++   +++    D    L I++ 
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178

Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
            + D G Y+    +  G+D +   +  
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 420 QFRITAENVVGFSE----------PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
            +    ++    +                E      +      P F+  L       +  
Sbjct: 75  TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECN 133

Query: 470 VEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
           V    +V  I     + WYKD  EI    +      + I TL+I + +  D G  +    
Sbjct: 134 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILK 191

Query: 529 NRAGHSITKARLRLEA 544
           +  G   ++ +L  EA
Sbjct: 192 DDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 5/111 (4%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY- 603
            P  +     E   + E G++     +          ++ N + +  G +Y++       
Sbjct: 3   DPFTKSELAVE---ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 59

Query: 604 -LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMT 653
            + + +   +  D G Y     +    + ++ ++          +A+    
Sbjct: 60  IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 110

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  137 bits (347), Expect = 5e-37
 Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 18/208 (8%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDI 507
           A  P  IR   +          F     G P P + W K+G ++    SR   +     I
Sbjct: 4   AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63

Query: 508 STLIIHQAALM-DEGEIKCTATNRAGHSIT-KARLRL-------EAPPTIRLPKQYEDGL 558
           S L I       D+   +C A N  G +++  A L +          P I          
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT---R 120

Query: 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
           + E+G  + +     G P P   W+ N   +                L+I ++R  D+G+
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGK 177

Query: 619 YQAHGVNSLGEDVAS-FLVTVTDRPLPP 645
           Y+    NS+G + +    + V  R +  
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVGT 205

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 96.0 bits (239), Expect = 2e-22
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 402 MVEDTELMVSGLEPGWRYQ----FRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFI 456
           + +   + +  +EP    +    +   AEN VG  +       LT+    ++PA  P   
Sbjct: 57  LEQPGGISILRIEPVRAGRDDAPYECVAENGVG--DAVSADATLTIYEGDKTPAGFPVIT 114

Query: 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA 516
           +            V  T +  G PTP + W K+  ++  S  +  + D     L I  + 
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSR 171

Query: 517 LMDEGEIKCTATNRAGHSITKA-RLRLEAPPTIRLPKQ 553
             D+G+ +C A N  G   +KA  L ++          
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  136 bits (345), Expect = 1e-36
 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 21/219 (9%)

Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSR 497
           PL   YQ     +P  I    D    ++E      +VEG P P + W+KDG  +     +
Sbjct: 2   PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56

Query: 498 RQRIVTDND--ISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRL-EAPPTIRLPKQ 553
             R+   +        +      D GE  C A NR G +++  A L++       R+  +
Sbjct: 57  SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116

Query: 554 YEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLR 607
                    GE   L+     G+P PT  W+ +G PL          + R       NL 
Sbjct: 117 ---DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173

Query: 608 ISDARRADRGEYQAHGVNSLGEDVASF-LVTVTDRPLPP 645
           IS+    D G Y+    N +G   +S+  + V  +    
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  142 bits (359), Expect = 1e-36
 Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 11/221 (4%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIR---ALHDTTALEDEKVEFTVQVEGI 479
            A      +        L V   R  A   PSF+           L    +       G+
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249

Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
           PTP ++WYK G ++ S +      +N    L I   +  D GE  C A+N+ G       
Sbjct: 250 PTPDIAWYKKGGDLPSDK---AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH 599
           +R++A P      +    L+   GE  +L     G P PT +W+ NGEPL S        
Sbjct: 307 VRVKAAPYWLDEPK---NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363

Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
                 +   D + + R  YQ +  N  G  +A+  V+V D
Sbjct: 364 VAGD-TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  123 bits (311), Expect = 3e-30
 Identities = 62/368 (16%), Positives = 108/368 (29%), Gaps = 87/368 (23%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQV-EGIPT 481
            A N  G +    LS  + +      + +P +    L      E   +        G+P+
Sbjct: 95  FARNKFGTA----LSNRIRLQV----SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS 146

Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGHS------ 534
           P + W     E  +  ++     N    L      L D + +  C A     H+      
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN--GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204

Query: 535 ----ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
               +   R   E  P+   P+      +   G  + L+   +G+P P   W   G  L 
Sbjct: 205 FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP 264

Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGK 647
           S  + +  + ++   LRI++    D GEY     N +G    +  V V   P     P  
Sbjct: 265 SD-KAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP-- 319

Query: 648 AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR 707
             +++  G+   L          C+               G P+  P          T++
Sbjct: 320 KNLILAPGEDGRLV---------CRAN-------------GNPK--P----------TVQ 345

Query: 708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFRITA 764
           W       G P+        R             V    ++    +       YQ     
Sbjct: 346 W----MVNGEPLQSAPPNPNRE------------VAGDTIIFRDTQISSRA-VYQ--CNT 386

Query: 765 ENVVGFSE 772
            N  G+  
Sbjct: 387 SNEHGYLL 394

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  116 bits (292), Expect = 7e-28
 Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 28/244 (11%)

Query: 440 PLTVTYQRSPAAAPSFIR-ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR 498
           P+  + Q      P+  + +  D      + +    + +G P P   W ++      ++ 
Sbjct: 4   PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63

Query: 499 QRIVTDNDISTLIIHQ----AALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQ 553
            R+       TL+I           EGE +C A N+ G +++ + RL++   P    PK+
Sbjct: 64  PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLW--PKE 121

Query: 554 YEDGLLFEMGEIIKLKVS-MAGMPPPTARWLHNG-EPLTSGGRYEITHTDRYLNLRISDA 611
             D ++ + G  + L+ +   G+P P   W+ +  EP+T   R    H     +L  S+ 
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNV 178

Query: 612 RRAD-RGEYQAHGVNSLGEDV---ASFLVTVTDRPLPPGKA-----------KVVMTLGK 656
              D + +Y  +        +     F + V        +              ++  G 
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238

Query: 657 SVTL 660
            + L
Sbjct: 239 DLLL 242

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  144 bits (365), Expect = 1e-36
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 21/238 (8%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSS 496
           SE   +  + +  A P    +       E E+   T  ++ + +    +W ++  +    
Sbjct: 197 SEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256

Query: 497 RRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
            +       D      +TL I  A + D G   C A N  G +     L +     I + 
Sbjct: 257 EKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIF 316

Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYL-----N 605
                 +    GE + L V     P P   +W++     T          +         
Sbjct: 317 PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376

Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTL--GKSVTLS 661
           L ++  +  + G Y     NS      +F V V  +P        ++T     +  L 
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-------EILTYDRLVNGMLQ 427

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  121 bits (304), Expect = 9e-29
 Identities = 50/349 (14%), Positives = 86/349 (24%), Gaps = 62/349 (17%)

Query: 316 NQAPLYVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE 373
            +A   V + +A   L  G +  + C IK                          W+   
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-----------------YSTWK--- 247

Query: 374 YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 433
            +     L         G         +      L +S         F   A N  G + 
Sbjct: 248 RENSQTKLQEKYNSWHHGDF-------NYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 434 PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFE 492
              ++  L V           F          + E V+  V+ E  P P+   W      
Sbjct: 301 ---VTTTLEV---VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRT 354

Query: 493 IFSSRRQRIVTDNDI-----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
                     ++N+      S L + +    + G      +N   ++     + +   P 
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414

Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-- 605
           I         L ++      L+   AG P PT  W              +    + LN  
Sbjct: 415 I---------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465

Query: 606 ----------LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
                       I  +     G  +    N +G+  A F          
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  110 bits (277), Expect = 2e-25
 Identities = 34/223 (15%), Positives = 60/223 (26%), Gaps = 15/223 (6%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
                         ED        +   P       K        +  R + D     +I
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKL 568
                      + C+     G S+   +  L+  P  +        +   L   GE   +
Sbjct: 173 KSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231

Query: 569 KVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLN-----LRISDARRADRGEYQAH 622
             ++  +       W           +Y   H   +       L IS AR  D G +  +
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291

Query: 623 GVNSLGEDVASFLVTVTDRP----LPPGKAKVVMTLGKSVTLS 661
             N+ G    +  + V D+      P     V +  G++V L 
Sbjct: 292 ANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.8 bits (217), Expect = 5e-18
 Identities = 43/263 (16%), Positives = 77/263 (29%), Gaps = 44/263 (16%)

Query: 410 VSGLEPGWRY--QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALED 467
           + G    W +     +      G S+P   S            + PS      D      
Sbjct: 1   MRGARGAWDFLCVLLLLLRVQTGSSQP---SVSPGEP------SPPSIHPGKSDLIVRVG 51

Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
           +++       G     V W  +  +           +N  +  I  +A   + G+  CT 
Sbjct: 52  DEIRLLCTDPG----FVKWTFEILDE--------TNENKQNEWITEKAEATNTGKYTCTN 99

Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH--N 585
            +   +SI    + +  P  + L  +    L  +      ++      P  T   L    
Sbjct: 100 KHGLSNSIY---VFVRDPAKLFLVDRS---LYGKEDNDTLVRCP-LTDPEVTNYSLKGCQ 152

Query: 586 GEPLTSGGRYEITHTDRYLNLRISDARRA-DRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
           G+PL    R+          + I   +RA  R           G+ V S    +  RP  
Sbjct: 153 GKPLPKDLRFIPDPK---AGIMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAF 208

Query: 645 PG-------KAKVVMTLGKSVTL 660
                    KA  ++  G+  T+
Sbjct: 209 KAVPVVSVSKASYLLREGEEFTV 231

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.5 bits (172), Expect = 2e-12
 Identities = 19/148 (12%), Positives = 36/148 (24%), Gaps = 29/148 (19%)

Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
            Y F     N    +    ++  + V         P  +      T              
Sbjct: 389 TYTF--LVSNSDVNAA---IAFNVYVNT------KPEIL------TYDRLVNGMLQCVAA 431

Query: 478 GIPTPKVSWYK-------DGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKC 525
           G P P + WY            +     Q + +        +    I  +A    G ++C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491

Query: 526 TATNRAGHSITKARLRLEAPPTIRLPKQ 553
            A N  G +        +     ++   
Sbjct: 492 KAYNDVGKTSAYFNFAFKGNNKEQIHPH 519

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  147 bits (373), Expect = 2e-36
 Identities = 56/386 (14%), Positives = 103/386 (26%), Gaps = 54/386 (13%)

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
            +            +   H       EK+             + +  +        ++ +
Sbjct: 214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 273

Query: 502 VTD----------NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
             D            +STL I      D+G   C A++          +R+   P +   
Sbjct: 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 333

Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
              E  +   +GE +++     G PPP  +W  NG PL S    +  H      L I + 
Sbjct: 334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEV 388

Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTVTDR------PLPPGKAKVVMTLGKSVTLSWSEP 665
              D G Y     N + ++  S +V++                      G + TL+    
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT---- 444

Query: 666 EDDGGCKIGNY----IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
                C +        + ++         +        +           ++ GG+ +  
Sbjct: 445 -----CTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI-- 497

Query: 722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
             V   +         +   +      VS         ++  A N VG  E         
Sbjct: 498 -EVNKNQFALIEGKNKTVSTLVIQAANVSA-------LYKCEAVNKVGRGER---VISFH 546

Query: 782 VTYQRSPAAAPSFIRALHDTTALEDE 807
           VT           I    D    E E
Sbjct: 547 VT-------RGPEITLQPDMQPTEQE 565

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  138 bits (348), Expect = 1e-33
 Identities = 52/246 (21%), Positives = 76/246 (30%), Gaps = 39/246 (15%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A N VG  E         VT           I    D    E E V      +      
Sbjct: 531 EAVNKVGRGER---VISFHVT-------RGPEITLQPDMQPTEQESVSLWCTADRSTFEN 580

Query: 484 VSWYKDGFEIFSSRRQRIVT--------------------DNDISTLIIHQAALMDEGEI 523
           ++WYK G +        + T                     NDI  + +  A+L D+G+ 
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640

Query: 524 KCTATNRAGHSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
            C A +R          +L       PTI      E+     +GE I++  + +G PPP 
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTIT--GNLEN-QTTSIGESIEVSCTASGNPPPQ 697

Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
             W  + E L       +   +R  NL I   R+ D G Y     + LG         + 
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755

Query: 640 DRPLPP 645
                 
Sbjct: 756 GAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  129 bits (325), Expect = 1e-30
 Identities = 42/274 (15%), Positives = 72/274 (26%), Gaps = 47/274 (17%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A + +   +         V     P              A   E+V    +  G P P+
Sbjct: 308 AASSGLMTKK-----NSTFVRVHEKPFV-AFGSGMESLVEATVGERVRIPAKYLGYPPPE 361

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           + WYK+G  + S+   +         L I + +  D G      TN          + L 
Sbjct: 362 IKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416

Query: 544 --APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLT---------- 590
              PP I           ++ G    L  ++  +PPP    W    E             
Sbjct: 417 VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSV 476

Query: 591 -----------------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
                                  +  ++ +          +          Y+   VN +
Sbjct: 477 TNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKV 536

Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
           G         VT  P    +  +  T  +SV+L 
Sbjct: 537 GRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  107 bits (268), Expect = 6e-24
 Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 31/250 (12%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
                     P    +             P         T   +  ++ T + +      
Sbjct: 15  VETRAASVGLPSVSLDL------------PRLSIQKDILTIKANTTLQITCRGQ----RD 58

Query: 484 VSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
           + W     +  S +R  +   +D     TL I +    D G  KC        S+    +
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGE----IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE 596
           +    P I         +     +    +I    S++ +             +  G R  
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 178

Query: 597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP-----GKAKVV 651
                      I     +  G        +     +   + V                + 
Sbjct: 179 WDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235

Query: 652 MTLGKSVTLS 661
           +++G+ + L+
Sbjct: 236 LSVGEKLVLN 245

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  102 bits (254), Expect = 3e-22
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
            Y     A++               +T       AP+    L + T    E +E +    
Sbjct: 639 DYVCL--AQDRKTKKR---HCVVRQLTVL--ERVAPTITGNLENQTTSIGESIEVSCTAS 691

Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
           G P P++ W+KD   +       +   N    L I +    DEG   C A +  G +  +
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749

Query: 538 ARLRLEAPPTI 548
           A   +E     
Sbjct: 750 AFFIIEGAQEK 760

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.4 bits (182), Expect = 1e-13
 Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 19/159 (11%)

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           +    L+      C  T  A   +    L     P + + K     L  +    +++   
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLD---LPRLSIQKDI---LTIKANTTLQITCR 54

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLG 628
             G       WL       S  R E+T          L I      D G Y+     +  
Sbjct: 55  --GQRDLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110

Query: 629 EDVASFLVTVTDRPLPPGKAK------VVMTLGKSVTLS 661
             V    V     P     +       +     K+V + 
Sbjct: 111 ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIP 149

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  135 bits (340), Expect = 7e-36
 Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 20/227 (8%)

Query: 442 TVTYQRSPAAAPSFIRAL----HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
            V+   +   AP +                  V+F     G P P + W K+G E     
Sbjct: 5   FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64

Query: 498 R-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY-- 554
           R       N   +LI+      D+G   C   N  G       L +      R   Q   
Sbjct: 65  RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124

Query: 555 -EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE-----------PLTSGGRYEITHTDR 602
             +      G  ++    +     P  +W+ + E           P     ++   ++  
Sbjct: 125 PANASTVV-GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK 649
              L + +   AD GEY     N +G+   S  +TV  +   PG+ K
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 74.5 bits (183), Expect = 5e-15
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 7/138 (5%)

Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
           A   +++      AP      K  +          +K +    G P PT RWL NG+   
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61

Query: 591 SGGRYEITHTDRYL-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP---- 645
              R           +L +     +D+G Y     N  G    ++ + V +R        
Sbjct: 62  QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQ 121

Query: 646 --GKAKVVMTLGKSVTLS 661
               A     +G  V   
Sbjct: 122 AGLPANASTVVGGDVEFV 139

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  127 bits (320), Expect = 1e-34
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P    +      +     T++W PP+  G   + GYLVE+   GS  WV A+   V
Sbjct: 8   PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 63

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
           E     V  L  G R  FR+   N+ G SEP  L +P+T+   R    + 
Sbjct: 64  ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI---RESGPSS 110

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  127 bits (320), Expect = 1e-34
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P    +      +     T++W PP+  G   + GYLVE+   GS  WV A+   V
Sbjct: 8   PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 63

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
           E     V  L  G R  FR+   N+ G SEP  L +P+T+   R    + 
Sbjct: 64  ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI---RESGPSS 110

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  129 bits (326), Expect = 2e-34
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 17/196 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDNDIS 508
             P  + +           V     +       +   W K+G E+ ++R+     +    
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNM 56

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
              I++    D GE  C   +        A + ++A P I   K+ E+      G+   +
Sbjct: 57  EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENK---NEGQDAMM 112

Query: 569 KVSMAGMPPPTARWLHNGEPLT-----SGGRYEITHTDRYLNLRISD-ARRADRGEYQAH 622
                G P P   W      +      S GR+ I + + Y  L I +     D GEY+ +
Sbjct: 113 YCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172

Query: 623 GVNSLGEDVASFLVTV 638
             NS+G    S ++ V
Sbjct: 173 ATNSIGSASVSTVLRV 188

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  126 bits (318), Expect = 2e-34
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP    +     S+     T+RW PP++ G + + GY++E+   G+  W+ A+  ++
Sbjct: 7   GTSPPTLLTVD----SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI 62

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           + T+  ++GL    +   R+ A N  G SEP   S+P+ V       + PS
Sbjct: 63  DKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV-----KESGPS 108

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  126 bits (318), Expect = 2e-34
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP    +     S+     T+RW PP++ G + + GY++E+   G+  W+ A+  ++
Sbjct: 7   GTSPPTLLTVD----SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI 62

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           + T+  ++GL    +   R+ A N  G SEP   S+P+ V       + PS
Sbjct: 63  DKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV-----KESGPS 108

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  131 bits (330), Expect = 3e-34
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 28/234 (11%)

Query: 449 PAAAPSFIRALH----DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVT 503
              AP + R                V F     G PTP +SW K+G E     R   I  
Sbjct: 8   DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 67

Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFE-- 561
            +   +L++      D G   C   N+ G       L +      R   Q     L    
Sbjct: 68  RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG---LPANQ 124

Query: 562 ---MGEIIKLKVSMAGMPPPTARWLHNGEP------------LTSGGRYEITHTDRYLNL 606
              +G  ++    +     P  +WL + E             +T    +     +  + L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184

Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
           R+++    D GEY     N +G    +F ++V     P    + ++   ++ ++
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG---PRAAEEELVEADEAGSV 235

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 22/164 (13%)

Query: 401 HMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
              +   L++  + P   G  Y      EN  G       +  L V  +RSP        
Sbjct: 67  LRHQQWSLVMESVVPSDRG-NYTC--VVENKFGSIR---QTYTLDV-LERSPHRPILQAG 119

Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS------------RRQRIVTDN 505
              + TA+    VEF  +V     P + W K      S             +     +  
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
               L +   +  D GE  C ATN  G +     L +  P    
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  124 bits (313), Expect = 9e-34
 Identities = 29/95 (30%), Positives = 42/95 (44%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           ++ P  +  L DTT   D   +F V+  G P P   W KDG  I    + ++  D     
Sbjct: 4   SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           L IH+    D G   CT  N AG   +  +L ++A
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
             + K  V   G P PTA W  +G+ +T GG+Y+++       L I     +D G Y   
Sbjct: 21  DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80

Query: 623 GVNSLGEDVASFLVTV 638
             NS G   +S  +T+
Sbjct: 81  VKNSAGSVSSSCKLTI 96

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  128 bits (323), Expect = 1e-33
 Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 17/203 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDND 506
             P  +    D    + E      + EG PTP + WYK G  + +     R  R++  + 
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 507 ---ISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA-PPTIRLPKQYEDGLLFE 561
                 ++  + +  DEG   C A N  G +++  A L +       R        ++  
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS---DVMVA 124

Query: 562 MGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           +GE   ++     G P PT  W  +G PL                L I+  R++D G+Y 
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYV 181

Query: 621 AHGVNSLGEDVASF-LVTVTDRP 642
             G N +GE  +    +TV +RP
Sbjct: 182 CVGTNMVGERESEVAELTVLERP 204

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  133 bits (336), Expect = 1e-33
 Identities = 46/306 (15%), Positives = 87/306 (28%), Gaps = 45/306 (14%)

Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
           + C+I                      V  + W     D             +       
Sbjct: 123 IKCLIPSFVADF---------------VEVVSWH---TDEEENYFPGAEYDGKY------ 158

Query: 397 RASPHMVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
                ++   EL +  + P      ++   ++ +        ++   V  +   ++AP  
Sbjct: 159 ----LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214

Query: 456 IRALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLII 512
              +      +    +      +G P P   WYK        +   +         TLII
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
             A + D G+  C   N  G    +  L + AP + ++          + G         
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQY 331

Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
            G P  T  W+ +G+ +                LRI   ++ D+G YQ    N      A
Sbjct: 332 TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEA 381

Query: 633 SFLVTV 638
           S  + +
Sbjct: 382 SAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  108 bits (271), Expect = 3e-25
 Identities = 48/259 (18%), Positives = 82/259 (31%), Gaps = 34/259 (13%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI---P 480
            A N  G      +S  + V        A  +   ++    +          +       
Sbjct: 83  LARNQFGSI----ISRDVHVRA----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134

Query: 481 TPKVSWYKDGFEIF-----SSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGH- 533
              VSW+ D  E +        +  ++       L I +    D     +C   +R    
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 191

Query: 534 ---SITKARLRLEAPPTIRLPKQY---EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
              S TK RL +  P +   P+     +  L   +   I L     G P P+ RW    E
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251

Query: 588 PLTSGGRYEITHTDRYLN--LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP--- 642
             T      +    + ++  L I DA   D G+Y     NS+G +    ++TVT      
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 311

Query: 643 LPPGKAKVVMTLGKSVTLS 661
           + P      +  G+    +
Sbjct: 312 IDP--PTQTVDFGRPAVFT 328

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  100 bits (251), Expect = 1e-22
 Identities = 36/230 (15%), Positives = 65/230 (28%), Gaps = 29/230 (12%)

Query: 452 APSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDIST 509
            P F++   +          E   +  G P P++ W + DG  +      R ++ +    
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GK 60

Query: 510 LIIHQA------ALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEM 562
           L+            +      C A N+ G  I+    +R             E       
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV---IR 117

Query: 563 GEIIKLK---VSMAGMPPPTARWLHNGEPL-----TSGGRYEITHTDRYLNLRISDARRA 614
           G    +K    S          W  + E          G+Y +  +     L I +    
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPE 174

Query: 615 D-RGEYQAHGVNSLGEDV---ASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
           D    YQ    + L  +    A+    V   P+     +    + K + L
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  133 bits (336), Expect = 2e-33
 Identities = 36/251 (14%), Positives = 67/251 (26%), Gaps = 28/251 (11%)

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
           SP +V+  E ++  L        R  A N +G       +   T+          +    
Sbjct: 187 SPAVVKKEEKVLHELFGT---DIRCCARNELGREC----TRLFTIDL------NQTPQTT 233

Query: 459 LHDTTALEDEKVEFT-VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND------ISTLI 511
           L        E +      V       ++W  +   +       + T +       I    
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           +   A  D G   C+++     S   A + +     I      ED    +  E     V 
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSED-YEIDQYEEFCFSVR 349

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
               P     W  + +      +      D   ++      +   GEY  H  N   +  
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKG----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405

Query: 632 ASFLVTVTDRP 642
             F + +    
Sbjct: 406 KMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  122 bits (307), Expect = 1e-29
 Identities = 19/210 (9%), Positives = 53/210 (25%), Gaps = 9/210 (4%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           +   +             +   V V+        W      +       +  +  + +++
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           I +      GE      + A +      + +       L + Y      +M     L   
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPY----FRKMENQDALVCI 162

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
              +P P   W+       S          +     +         + +    N LG + 
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEESPAVVKKE-EKVL---HELFGTDIRCCARNELGREC 218

Query: 632 ASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
                   ++       ++ + +G+ + + 
Sbjct: 219 TRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  120 bits (301), Expect = 6e-29
 Identities = 36/248 (14%), Positives = 72/248 (29%), Gaps = 31/248 (12%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
             ++              T+ +  S      +         +E++        E +P P 
Sbjct: 121 FIQSEATNY---------TILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPI 170

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           V W     +  S + +           ++H+       +I+C A N  G   T+      
Sbjct: 171 VEWVLCDSQGESCKEESPAVVKKE-EKVLHEL---FGTDIRCCARNELGRECTRLFTIDL 226

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTD- 601
                    Q    L  ++GE + ++  ++         W    + L  G  +E++    
Sbjct: 227 NQTPQTTLPQ----LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282

Query: 602 -----RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMT 653
                R L   +S   R D G Y         +   S LVT+ ++             + 
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEID 339

Query: 654 LGKSVTLS 661
             +    S
Sbjct: 340 QYEEFCFS 347

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  123 bits (312), Expect = 2e-33
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PPGKP  L    ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   +
Sbjct: 10  PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 443
            + E  VSGL     Y+FR+ A+N  G  S P   S+ +T 
Sbjct: 66  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  123 bits (312), Expect = 2e-33
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PPGKP  L    ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   +
Sbjct: 10  PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 782
            + E  VSGL     Y+FR+ A+N  G  S P   S+ +T 
Sbjct: 66  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  122 bits (308), Expect = 5e-33
 Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           PPGP   P+L             +RW PP  DGGSP+  Y VE                 
Sbjct: 8   PPGPCLPPRLQGRP---KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 62

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            + E  VS L PG  Y FR+ A N +GF       +  T     +P + PS
Sbjct: 63  SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT-----APGSGPS 108

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  122 bits (308), Expect = 5e-33
 Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           PPGP   P+L             +RW PP  DGGSP+  Y VE                 
Sbjct: 8   PPGPCLPPRLQGRP---KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 62

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            + E  VS L PG  Y FR+ A N +GF       +  T     +P + PS
Sbjct: 63  SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT-----APGSGPS 108

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  125 bits (315), Expect = 1e-32
 Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 35/220 (15%)

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
                           L  + V+   +  G P  +  W+K   EI +            S
Sbjct: 15  VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------S 65

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTI---RLPKQYEDGLLFEM-- 562
            LI +   + D G   C   N      ++ ++L +   P      +    E  L   +  
Sbjct: 66  ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 563 -------GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD 615
                  G  + L+    G P P  +W  N  PLT   +             +       
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------LYMVPYVDLEH 176

Query: 616 RGEYQAHGVNSLGEDVAS-FLVTVTDRPL---PPGKAKVV 651
           +G Y  H  N      +    + + +      P  K +  
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 85.3 bits (211), Expect = 1e-18
 Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 17/136 (12%)

Query: 424 TAENVVG--FSEPGPLS-----EPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV 476
              N     FS+   L      E    +      +             +    +      
Sbjct: 83  RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142

Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
            G P P   W+K+   +    +            ++    L  +G   C   N      +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193

Query: 537 KA-RLRLEAPPTIRLP 551
           K   + ++    +  P
Sbjct: 194 KKVEIIIDELNNLGHP 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  124 bits (313), Expect = 2e-32
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 21/207 (10%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI--- 507
            + +   +  +    E+  V+ +    G  +P+V W  D  +                  
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 508 -----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRL--EAPPTIRLPKQYEDGLLF 560
                + +        D G   C  +   G+S  + +++L    PP+   P         
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK--PTVNIPSSAT 120

Query: 561 EMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-------NLRISDAR 612
             G    L      G PP    W  +G  + +  +     ++           L      
Sbjct: 121 I-GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179

Query: 613 RADRGEYQAHGVNSLGEDVASFLVTVT 639
            +D GEY     N  G  + S  V + 
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 83.5 bits (206), Expect = 3e-18
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 28/190 (14%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFR 422
            + W+   +D G         ++ T S             T +    +     G  Y   
Sbjct: 35  RVEWK---FDQGDTTRLVCYNNKITASYEDR----VTFLPTGITFKSVTREDTG-TYTC- 85

Query: 423 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPT 481
                  G          + +         PS       ++A    +   T    +G P 
Sbjct: 86  -MVSEEGG---NSYGEVKVKLIVL----VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP 137

Query: 482 PKVSWYKDGFEIFSSRRQRIVTDN-------DISTLIIHQAALMDEGEIKCTATNRAGHS 534
            + +W+KDG  + ++ +      N           L+    +  D GE  C A N  G  
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197

Query: 535 ITKARLRLEA 544
           +T   +R+EA
Sbjct: 198 MTSNAVRMEA 207

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  133 bits (335), Expect = 2e-32
 Identities = 70/445 (15%), Positives = 133/445 (29%), Gaps = 60/445 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP    ++ +S  L   +  + W  P       +L Y +++R   +  W +  P   
Sbjct: 198 KPNPPHNLSVI-NSEELSSIL-KLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDT 254

Query: 404 E--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRALH 460
               +   V  L+P   Y FRI      G       SE  +  TY+  P+ APSF   + 
Sbjct: 255 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKID 314

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
            +       V   +  + +P  + +     +E+  +R +  + +  ++   +      D 
Sbjct: 315 PSHTQGYRTV--QLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDR 372

Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
                T  N  G S             + +P            +     + +   P    
Sbjct: 373 YLATLTVRNLVGKS---------DAAVLTIPA--------CDFQATHPVMDLKAFPKDNM 415

Query: 581 RWLHNGEPLTSGGRYEITHTDRYLNL-RISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
            W+    P  S  +Y +           I+D ++ D   ++ +   +L E    +L+TVT
Sbjct: 416 LWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESK-CYLITVT 474

Query: 640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSL 699
                          G   ++     +                PP      +       +
Sbjct: 475 --------PVYADGPGSPESIKAYLKQA---------------PPSKGPTVRT----KKV 507

Query: 700 DRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
            ++   + W+  P       +  Y + +R                 TE  +S L     Y
Sbjct: 508 GKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD--SSHTEYTLSSLTSDTLY 565

Query: 759 QFRITAENVVGFSEPGPLSEPLTVT 783
             R+ A    G        E    T
Sbjct: 566 MVRMAAYTDEG---GKDGPEFTFTT 587

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  106 bits (266), Expect = 7e-24
 Identities = 38/278 (13%), Positives = 69/278 (24%), Gaps = 67/278 (24%)

Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD-RGEYQAHGVNSLGEDVA 632
            +      W  N   +       I  T    ++  +D    + +          L ++V 
Sbjct: 36  HVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASLNIQLTCNILTFGQLEQNVY 93

Query: 633 SFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIG------------------ 674
              +     P  P     ++  GK +   W +   +   +                    
Sbjct: 94  GITIISGLPPEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKFADCKAK 152

Query: 675 -------------NYIVEY-FR-----------------------PPGPPGKPQLLPDSP 697
                         Y V                             P PP    ++ +S 
Sbjct: 153 RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVI-NSE 211

Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE--DTELMVSGLEPG 755
            L   +  + W  P       +L Y +++R   +  W +  P       +   V  L+P 
Sbjct: 212 ELSSIL-KLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPF 269

Query: 756 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             Y FRI      G       SE  +     +    PS
Sbjct: 270 TEYVFRIRCMKEDGKGYWSDWSEEASG---ITYEDRPS 304

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 66.2 bits (161), Expect = 3e-11
 Identities = 52/360 (14%), Positives = 86/360 (23%), Gaps = 77/360 (21%)

Query: 472 FTVQVEGIPTPKVSW-------YKDGFEIFSSRRQR------IVTDNDISTLIIHQAALM 518
            +  V      +  W        +  F + S              D   S  + +     
Sbjct: 109 LSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYF 168

Query: 519 DEGEIKCTATNRAGH---SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM 575
              E+   A N  G             +  P                   + +  S    
Sbjct: 169 VNIEVWVEAENALGKVTSDHINFDPVYKVKP--------------NPPHNLSVINSEELS 214

Query: 576 PPPTARW----LHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
                 W    + +   L    +Y I    +Y        R  D   +            
Sbjct: 215 SILKLTWTNPSIKSVIIL----KYNI----QY--------RTKDASTWSQIPPEDTASTR 258

Query: 632 ASFLVTVTDRPLPPGKA-----KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP 686
           +SF V      L P        + +   GK     WSE          + I    RP   
Sbjct: 259 SSFTVQD----LKPFTEYVFRIRCMKEDGKGYWSDWSEEA--------SGITYEDRPSKA 306

Query: 687 PGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           P     +  S +       + W+  P ++    +L Y V   R  S        + V  T
Sbjct: 307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNAT 362

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 805
           +L  +      RY   +T  N+VG       +                 ++A      L 
Sbjct: 363 KL--TVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLW 417

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 63.9 bits (155), Expect = 2e-10
 Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
            PP      +       + ++   + W+  P       +  Y + +R             
Sbjct: 494 APPSKGPTVRT----KKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD- 548

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               TE  +S L     Y  R+ A    G        E    T
Sbjct: 549 -SSHTEYTLSSLTSDTLYMVRMAAYTDEG---GKDGPEFTFTT 587

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 62.7 bits (152), Expect = 4e-10
 Identities = 27/173 (15%), Positives = 49/173 (28%), Gaps = 13/173 (7%)

Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASP 400
            +P   P     +  S +       + W+  P ++    +L Y V   R  S        
Sbjct: 301 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----N 356

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
           + V  T+L  +      RY   +T  N+VG       +                 ++A  
Sbjct: 357 YTVNATKL--TVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMDLKAFP 411

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
               L    VE+T   E +    + W     +       +        T +  
Sbjct: 412 KDNMLW---VEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG 461

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  133 bits (334), Expect = 4e-32
 Identities = 73/513 (14%), Positives = 149/513 (29%), Gaps = 58/513 (11%)

Query: 329 TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR 388
            G             P  P  + +              ++W    ++     + Y+V+ R
Sbjct: 145 CGHTCQVPKTLYKGVPLKPRKELRFTELQSG----QLEVKWSSK-FNISIEPVIYVVQRR 199

Query: 389 RTGSPYWVRASP------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
                +                D  + ++ + P   YQFR+ A NV G       S+   
Sbjct: 200 WNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFR 259

Query: 443 VTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-----VEGIPTP--KVSW---YKDGFE 492
            +   S   AP+ +R L ++T   D  V  T+         IP    KV W         
Sbjct: 260 SSKDPSAPPAPANLR-LANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318

Query: 493 IFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
           + + +++R  TD   +++I+ +     +  ++  A    G +  K+    +         
Sbjct: 319 VPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA---KVSLHFTSTH 375

Query: 553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR 612
              +           ++  +        R L  G P    G+ ++    +       +  
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRY 435

Query: 613 RADRGEYQAHGVNSLGEDVASFLVT---VTDRPLPPG-------KAKVVMTLGKSVTLSW 662
                        + G + +S +     +  + L          +     +  K+  + +
Sbjct: 436 HVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFF 495

Query: 663 SEPEDDGGCKIGNYIVEYFRPPGP-----PGKPQLLPDSPSLDRDVFTI--RWEPPEYDG 715
           + P         +  +      G        KP+ L  S  +     T    W+  + + 
Sbjct: 496 TTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANL 555

Query: 716 GSPVLGYLVEHRRTGSPYWVRASPHMV---------EDTELMVSGLEPGWRYQFRITAEN 766
             P+ G+ V      +     + P+ +         +   L V  L P   Y+  +    
Sbjct: 556 YQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLT 615

Query: 767 VVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
             G    GP +     T    P   PS     H
Sbjct: 616 PGG---EGPATIKTFRT----PELPPSSAHRSH 641

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 79.2 bits (194), Expect = 3e-15
 Identities = 59/432 (13%), Positives = 114/432 (26%), Gaps = 78/432 (18%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDV-FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
             P  P   +L   + + D  V  TI W+ PE +   PV  Y V      S   +  +  
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE-EPDIPVHHYKVFWSWMVSSKSLVPTKK 323

Query: 402 MVE------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
                       +++  L+P   Y   + A    G +        L  T   +       
Sbjct: 324 KRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQL 383

Query: 456 IRALHDTTALE----------DEKVEFTVQVEGIPTPKVSWYKDGFEI---FSSRRQRIV 502
           ++        +            +V      +G    KV W K        +  R     
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEA 443

Query: 503 TDNDISTLIIHQAALMDEGEIKCT-------------ATNRAGHSITKARLRLEAPPTIR 549
             ++ +T     + +  E  I                      HS     +    PP   
Sbjct: 444 CAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKA-EAVFFTTPPCSA 502

Query: 550 LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT---------SGGRYEITHT 600
           L  +    +         L   +A     +A ++     +T         +     +T  
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTG- 561

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA-KVVMT------ 653
             +  +  ++     R     + + S  + + S    +T   L P    ++ +       
Sbjct: 562 --F-QVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGG 618

Query: 654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY 713
            G +   ++  PE                PP    +  L    P          ++P   
Sbjct: 619 EGPATIKTFRTPEL---------------PPSSAHRSHLKHRHPH--------HYKPSPE 655

Query: 714 DGGSPVLGYLVE 725
             G P+   L+ 
Sbjct: 656 RYGKPIPNPLLG 667

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  122 bits (307), Expect = 6e-32
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 17/193 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT--DNDIS 508
           A    + A    T  + + V+    VEG+  P + W KDG  + +  +  I     + I 
Sbjct: 1   AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
            L +      D G   C   +     I++   L +E  P      + +D L        +
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT--VEPKD-LAVPPNAPFQ 117

Query: 568 LKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           L     G P P T  W      +                L ++         +     N 
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGG-------PAPSPSVLNVTGVT--QSTMFSCEAHNL 168

Query: 627 LGEDVA-SFLVTV 638
            G   + +  V +
Sbjct: 169 KGLASSRTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 18/116 (15%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP- 482
             E+         +S+P+ +T +      P F     D     +   + + +  G P P 
Sbjct: 78  QVEDGGE----TEISQPVWLTVE----GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
            + W++             +     S  +++   +       C A N  G + ++ 
Sbjct: 130 TIVWWRGT---------TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  122 bits (307), Expect = 8e-32
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
                          E   F  QV G      +SW+    E  S  +QRI     D+D S
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           TL I+ A + D G  KC  T   G        +++      +          F+ GE   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP---QEFKEGEDAV 119

Query: 568 LKVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           +   +    PPT  W H G  +      R+ +   +    L+I   ++ D G Y+  G  
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRI 176

Query: 626 SLGEDVASFLVTVT 639
               ++    + V 
Sbjct: 177 LARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 92.2 bits (229), Expect = 2e-21
 Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 9/120 (7%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
                 G          + V           F  A       E E       V     P 
Sbjct: 80  VVTAEDG----TQSEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT 131

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           + W   G ++   +  R +  ++ + L I      DEG  +C     A   I    +++ 
Sbjct: 132 IIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  131 bits (330), Expect = 1e-31
 Identities = 39/244 (15%), Positives = 70/244 (28%), Gaps = 29/244 (11%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
             +N +        S+P+ +     P        +   T       +  +      P  +
Sbjct: 360 GIQNELSVDH----SDPVILNVLYGP---DDPTISPSYTYYRPGVNLSLSCHAASNPPAQ 412

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
            SW  DG          I        L I      + G   C A N A          + 
Sbjct: 413 YSWLIDG---------NIQQHT--QELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461

Query: 544 APPTIRLPKQYEDGLL-FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
               +  P    +     E  + +            T  W  NG+ L    R ++++ +R
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCE-PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRP----LPPGKAKVVMTLGKS 657
              L + +  R D   Y     NS+  + +    + V   P    + P  +      G +
Sbjct: 521 T--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY--LSGAN 576

Query: 658 VTLS 661
           + LS
Sbjct: 577 LNLS 580

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  128 bits (322), Expect = 1e-30
 Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 22/230 (9%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
           +E  T  ++  P      I + +     + + V FT + E        W+ +   +  S 
Sbjct: 97  NEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSP 155

Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYED 556
           R ++   N   TL +      D    KC   N      +    L +   P    P     
Sbjct: 156 RLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA--PTISPL 211

Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
              +  GE + L    A  PP    W  NG    S              L I +    + 
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-----------ELFIPNITVNNS 260

Query: 617 GEYQAHGVNSLGEDVASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
           G Y     NS      + + T+T    PP           +    +V L+
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  126 bits (318), Expect = 5e-30
 Identities = 41/218 (18%), Positives = 64/218 (29%), Gaps = 24/218 (11%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
            A N          +   T+T   S       I + +     + + V FT + E   T  
Sbjct: 444 QANNSASGHS---RTTVKTITV--SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT- 497

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLR- 541
             W+ +G  +  S R ++   N   TL +      D     C   N    + +    L  
Sbjct: 498 YLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555

Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
           L  P T  +         +  G  + L    A  P P   W  NG P             
Sbjct: 556 LYGPDTPIISPPDSS---YLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV------- 605

Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
               L I+     + G Y     N       S + ++T
Sbjct: 606 ----LFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  124 bits (312), Expect = 3e-29
 Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
             +N V        S+ + +     P    +   +  +T+    E +  +      P  +
Sbjct: 182 ETQNPVS----ARRSDSVILNVLYGP---DAPTISPLNTSYRSGENLNLSCHAASNPPAQ 234

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
            SW+ +G    S+             L I    + + G   C A N            + 
Sbjct: 235 YSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283

Query: 544 -----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
                  P I            E  + + L             W  N + L    R +++
Sbjct: 284 VYAEPPKPFITSNNSNP----VEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLS 338

Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRPLPP--GKAKVVMTLG 655
           + +R   L +    R D G Y+    N L  D     ++ V   P  P    +      G
Sbjct: 339 NDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396

Query: 656 KSVTLS 661
            +++LS
Sbjct: 397 VNLSLS 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  105 bits (262), Expect = 3e-23
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 30/224 (13%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI------------- 507
                E ++V   V          SWYK      + +    V                  
Sbjct: 8   PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67

Query: 508 ---STLIIHQAALMDEGEIKCTATNRAG----HSITKARLRLEAPPTIRLPKQYEDGLLF 560
              ++L+I      D G                +           P+I            
Sbjct: 68  YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP----V 123

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           E  + +            T  W  N + L    R ++++ +R   L + +  R D   Y+
Sbjct: 124 EDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYK 180

Query: 621 AHGVNSLGEDV-ASFLVTVTDRPLPPGKAKVVMTL--GKSVTLS 661
               N +      S ++ V   P  P  + +  +   G+++ LS
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.7 bits (178), Expect = 4e-13
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV 484
            +N V  +     S+P+T+     P    + I +  D++ L    +  +      P+P+ 
Sbjct: 539 IQNSVSANR----SDPVTLDVLYGP---DTPIISPPDSSYLSGANLNLSCHSASNPSPQY 591

Query: 485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           SW  +G     +             L I +    + G   C  +N A          +  
Sbjct: 592 SWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640

Query: 545 P 545
            
Sbjct: 641 S 641

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  123 bits (311), Expect = 7e-31
 Identities = 44/239 (18%), Positives = 65/239 (27%), Gaps = 20/239 (8%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR----ALHDTTALEDEKVEFTVQVEGI 479
           +       S                   AP + R                V F     G 
Sbjct: 91  SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGN 150

Query: 480 PTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
           PTP +SW K+G E     R   I   +   +L++      D G   C   N+ G      
Sbjct: 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210

Query: 539 RLRLEAPPTIRLPKQYEDG--LLFEMGEIIKLKVSMAGMPPPTARWLH----NGEPLTSG 592
            L +      R   Q          +G  ++    +     P  +WL     NG  +   
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 270

Query: 593 GRYEIT---------HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           G   +T                L + +    D GEY     NS+G    S  + V    
Sbjct: 271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  123 bits (310), Expect = 8e-31
 Identities = 42/245 (17%), Positives = 64/245 (26%), Gaps = 34/245 (13%)

Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
           R+                   + VE +     G P     W KDG  +  S R  +    
Sbjct: 3   RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-- 60

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSIT---------------------KARLRLEA 544
               L +  A+  D G   C                                +       
Sbjct: 61  --QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118

Query: 545 PPTIRLPKQYEDGLL-FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
            P    P++ +  LL       ++ +   AG P P+  WL NG       R         
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178

Query: 604 L-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP------GKAKVVMTLGK 656
             +L +     +DRG Y     N  G    ++ + V +R            A     LG 
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238

Query: 657 SVTLS 661
            V   
Sbjct: 239 DVEFH 243

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  124 bits (311), Expect = 7e-31
 Identities = 36/248 (14%), Positives = 61/248 (24%), Gaps = 25/248 (10%)

Query: 438 SEPLTVTYQRSPAAA---PSFIRALHDTTALEDEKVEFT-------VQVEGIPTPKVSWY 487
           ++P T+       AA       R       LE E V          +     P   ++W+
Sbjct: 1   ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60

Query: 488 KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           K+         +          L +  A   D G   CT  N +        LR+     
Sbjct: 61  KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120

Query: 548 IRLPKQYEDGLLFEMGEII----KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
             LP      +L      +     L            +W  +   L              
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK-FLSVRGT 179

Query: 604 LNLRISDARRADRGEYQAHGVNSLGED------VASFLVTVTDRPLPP----GKAKVVMT 653
            +L + D    D G Y+     +               +        P        +  +
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239

Query: 654 LGKSVTLS 661
           LG  +T+ 
Sbjct: 240 LGSRLTIP 247

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 89.7 bits (222), Expect = 2e-19
 Identities = 43/239 (17%), Positives = 69/239 (28%), Gaps = 38/239 (15%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE---FTVQVEGIP 480
           T  N     +   +S  L V    +  A   FI      T      +     +       
Sbjct: 99  TTRNASYCDK---MSIELRV--FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT 153

Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
             K+ WYKD   +     + +      + L++H  AL D G  +C  T            
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITR 212

Query: 541 RLE---------APPTIRLPKQYEDGLLFEMGEIIKL--KVSMA-GMPPPTARW-LHNGE 587
            +E           P I  P +        +G  + +  KV +  G P  T  W   N  
Sbjct: 213 SIELRIKKKKEETIPVIISPLKTIS---ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269

Query: 588 PLTS---------GGRYEITHTDRYL---NLRISDARRADRG-EYQAHGVNSLGEDVAS 633
            + S         G R E +  +       L      R D   +++    N+L      
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 61.2 bits (148), Expect = 6e-10
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 19/136 (13%)

Query: 424 TAENVVGFSEPGPLSEPLTVT-YQRSPAAAPSFIRALHDTTALEDEKVEFTVQV---EGI 479
                    +   ++  + +   ++     P  I  L   +A    ++    +V    G 
Sbjct: 198 VLTFAHE-GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGT 256

Query: 480 PTPKVSWYK----------DGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEG-EIKC 525
           P   + W+            G  +    RQ    +N+      LI       D   + KC
Sbjct: 257 PLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC 316

Query: 526 TATNRAGHSITKARLR 541
              N       +  ++
Sbjct: 317 VVHNTLSFQTLRTTVK 332

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  116 bits (292), Expect = 8e-31
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P  P L            +++W  P        + Y++E     S Y  +      
Sbjct: 7   GPSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-G 61

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           ED    V  L    +Y+F++ A N  G S P  + E  T      P + PS
Sbjct: 62  EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT-----CPDSGPS 107

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  116 bits (292), Expect = 8e-31
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P  P L            +++W  P        + Y++E     S Y  +      
Sbjct: 7   GPSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-G 61

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           ED    V  L    +Y+F++ A N  G S P  + E  T      P + PS
Sbjct: 62  EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT-----CPDSGPS 107

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  114 bits (288), Expect = 2e-30
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
           P T+        AP     +        +   F + V+  PT +V WY +G E+  S + 
Sbjct: 2   PFTLD------HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI 55

Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
                + + TL I      D G  +   TN  G +   A L +   
Sbjct: 56  HYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 22/78 (28%), Positives = 32/78 (41%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+  +  +++   P    +W HNG  L    +   T+T   L L I D    D G Y+A 
Sbjct: 23  GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82

Query: 623 GVNSLGEDVASFLVTVTD 640
             N  GE      + VT 
Sbjct: 83  CTNYKGEASDYATLDVTG 100

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  114 bits (288), Expect = 2e-30
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDND 506
           S    P F++A  D T  E +      +V G+PTP +SW  DG  +      +++  +N 
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           + +LII      D G   C ATNRAG +     L + A  +
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 76.3 bits (188), Expect = 8e-17
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQA 621
           G++ ++   ++G+P P   W  +G+P+     +++    +   +L I      D G Y  
Sbjct: 24  GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPG 646
              N  G++  S  + V  +   P 
Sbjct: 84  IATNRAGQNSFSLELVVAAKESGPS 108

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  115 bits (289), Expect = 3e-30
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
            +++ P  P  P     +    R +  + W  P +DG SP++ Y++E     +P+ V  +
Sbjct: 13  RVRQLPHAPEHPVATLSTVE-RRAI-NLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLA 69

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
               + T + V GL P   YQFR+ A N VG  +    +E +++     P + PS
Sbjct: 70  SVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL-----PESGPS 119

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  114 bits (287), Expect = 5e-30
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P  P     +    R +  + W  P +DG SP++ Y++E     +P+ V  +    
Sbjct: 17  LPHAPEHPVATLSTVE-RRAI-NLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDP 73

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           + T + V GL P   YQFR+ A N VG  +    +E +++     P + PS
Sbjct: 74  KATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL-----PESGPS 119

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  118 bits (296), Expect = 4e-30
 Identities = 35/213 (16%), Positives = 56/213 (26%), Gaps = 22/213 (10%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
            S   A  D    E+E ++ T    G  +P+V W        +            +    
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 509 ----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE--APPTIRLPKQYEDGLLFEM 562
                +        D GE  C  +   G +  +  + L    PP+           +   
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV--PSSVTI- 118

Query: 563 GEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL--------NLRISDARR 613
           G    L      G PP    W  +G  + +    +                +L       
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178

Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
            D GEY     N  G  + S    +    L  G
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 83.1 bits (205), Expect = 5e-18
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 23/190 (12%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
            + W+   +  GS     +  + +  +PY  R        + +  S +      ++    
Sbjct: 32  RVEWK---FVQGSTT-ALVCYNSQITAPYADR---VTFSSSGITFSSVTRKDNGEYTCMV 84

Query: 426 ENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKV 484
               G          + +T        PS       ++     +   T    +G P  + 
Sbjct: 85  SEEGG---QNYGEVSIHLTVL----VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137

Query: 485 SWYKDGFEIFSSRRQ--------RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
           SW+KDG  + ++  +            D     LI       D GE  C A N  G ++ 
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197

Query: 537 KARLRLEAPP 546
                ++A  
Sbjct: 198 SEAAHMDAVE 207

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  115 bits (290), Expect = 5e-30
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
              L    +  P   P F + + D   +E     F  +VEG P P+V W+KD   +  SR
Sbjct: 27  DAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR 86

Query: 498 RQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
             +I  D +   +L I +    D+ +  C A N  G +   A L +E      
Sbjct: 87  HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEG 139

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 72.6 bits (178), Expect = 5e-15
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 6/136 (4%)

Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP----KQYEDGLLFEMGEIIKLKV 570
           +     G    +  N        A L   A     +     K   D  + E G   +   
Sbjct: 5   SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDC 63

Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGE 629
            + G P P   W  +  P+     ++I + +    +L IS+    D  +Y    VNSLGE
Sbjct: 64  KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

Query: 630 DVASFLVTVTDRPLPP 645
              +  + V       
Sbjct: 124 ATCTAELLVETMGKEG 139

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  113 bits (284), Expect = 6e-30
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDISTL 510
           AP     +   T  +     F V+V G P P+  WYK+G +I  S R      ++++  L
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           +I      D   I   A N AG + + A L ++A
Sbjct: 65  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITH 599
            +EAP      +          G     +V + G P P   W  NG  +    R Y    
Sbjct: 2   SMEAPKIFERIQSQT----VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP 57

Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
            D    L I D    D        +N  GE  +   + V  +
Sbjct: 58  EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score =  113 bits (285), Expect = 7e-30
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIV 502
            +      AP FI        LE + V+   Q+  IP PK+ W ++   + F++ R  + 
Sbjct: 7   HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66

Query: 503 TDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
            DN    TL+I      D G    +A N AG +    RL + A P   LP
Sbjct: 67  QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT- 590
           GH         +  P      Q     + E G+ +KL+  ++ +PPP   W  N E +  
Sbjct: 2   GHHHHHHSHEHKRAPMFIYKPQ--SKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQF 58

Query: 591 SGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           +  R  +   +   + L I D  + D G Y    VN  G    +  + VT RP
Sbjct: 59  NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  113 bits (285), Expect = 7e-30
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDN 505
              + AP F   L      E   V FT +V G P PK+ W+KDG +I   S    I  D 
Sbjct: 3   SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62

Query: 506 D-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           D   +L    + L D+G     A N  G      RL ++A  +
Sbjct: 63  DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR--YLNLRISDARRADRGEYQ 620
           G  +     +AG P P   W  +G+ ++    +     D     +L  + +   D G Y 
Sbjct: 23  GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82

Query: 621 AHGVNSLGEDVASFLVTVTDRPLPPG 646
               N  G    +  + V      P 
Sbjct: 83  IMAANPQGRISCTGRLMVQAVNSGPS 108

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  112 bits (281), Expect = 2e-29
 Identities = 23/97 (23%), Positives = 34/97 (35%)

Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT 503
            +      A   +      T  E E   F+   +G P P V+W + G  + +S R ++ T
Sbjct: 6   HHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 65

Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
               ST  I      DEG       N  G    +  L
Sbjct: 66  TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +      G P PT  WL  G+ L++  R+++T T       IS  + +D G Y   
Sbjct: 29  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88

Query: 623 GVNSLGEDVASFLVTV 638
             NS G+  A F +T+
Sbjct: 89  VENSEGKQEAEFTLTI 104

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  112 bits (281), Expect = 4e-29
 Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 47/157 (29%)

Query: 626 SLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPG 685
           S G   AS  + + DRP PP   K+    G++V L+W+                      
Sbjct: 2   SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWT---------------------- 39

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
                                   PP+ DG + + GY ++     S  W     H    T
Sbjct: 40  ------------------------PPKDDGNAAITGYTIQKADKKSMEWFTVIEH-YHRT 74

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
              ++ L  G  Y FR+ +EN+ G SE   +++   V
Sbjct: 75  SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  105 bits (265), Expect = 4e-27
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 335 TDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 394
             +   I   PGPP   ++      +  +   + W PP+ DG + + GY ++     S  
Sbjct: 8   ASIDIQIIDRPGPPQIVKIE----DVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63

Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
           W     H    T   ++ L  G  Y FR+ +EN+ G SE   +++   V
Sbjct: 64  WFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  110 bits (278), Expect = 5e-29
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDI 507
               P FI+   + +  E        +V G+P P VSWY +G  + S    +++  +  +
Sbjct: 2   AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            +LI       D G   C A NRAG +    +L + A
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQA 621
           G   ++   ++G+P P   W  NG  + S   +++  +++   +L     R +D G Y  
Sbjct: 20  GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79

Query: 622 HGVNSLGEDVASFLVTVTDR 641
              N  GE   +  + V  +
Sbjct: 80  VAKNRAGEATFTVQLDVLAK 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  118 bits (296), Expect = 7e-29
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 15/197 (7%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P+    + + +    + V    QVEG    +  W     E  ++  +     +     + 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLA 217

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
           +  + ++   + C A N  G +    ++ +  P +++L                 +  S+
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHT-------AVEMHHWCIPFSV 270

Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-------LRISDARRADRGEYQAHGVN 625
            G P P+ RWL NG  L           +   N       LR++     + G Y     N
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330

Query: 626 SLGEDVASFLVTVTDRP 642
             G+  AS +    D P
Sbjct: 331 PFGQASASIMAAFMDNP 347

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  110 bits (278), Expect = 8e-29
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASP 739
             PP  P +P +     +       + W P   +GG P+  + VE+++      W+ A+ 
Sbjct: 15  LSPPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATS 69

Query: 740 HM-VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            +      + ++GLE G  Y+FR+ A N++G SEP   S P  V       + PS
Sbjct: 70  AIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV-----SGSGPS 119

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  110 bits (278), Expect = 9e-29
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 402
           PP  P +P +     +       + W P   +GG P+  + VE+++      W+ A+  +
Sbjct: 17  PPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAI 71

Query: 403 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                 + ++GLE G  Y+FR+ A N++G SEP   S P  V       + PS
Sbjct: 72  PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV-----SGSGPS 119

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score =  110 bits (276), Expect = 8e-29
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASPH 401
           P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W      +  
Sbjct: 7   PSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
              +  + + GL+P   Y  R+ A N  G  E    SE  T
Sbjct: 62  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score =  110 bits (276), Expect = 8e-29
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASPH 740
           P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W      +  
Sbjct: 7   PSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
              +  + + GL+P   Y  R+ A N  G  E    SE  T
Sbjct: 62  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score =  110 bits (277), Expect = 1e-28
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRA 737
              P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W      
Sbjct: 5   SSGPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           +     +  + + GL+P   Y  R+ A N  G  E    SE  T      P   PS
Sbjct: 60  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-----PVREPS 110

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score =  110 bits (277), Expect = 1e-28
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASP 400
            P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W      + 
Sbjct: 7   GPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
               +  + + GL+P   Y  R+ A N  G  E    SE  T      P   PS
Sbjct: 62  EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-----PVREPS 110

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  120 bits (302), Expect = 2e-28
 Identities = 21/211 (9%), Positives = 54/211 (25%), Gaps = 11/211 (5%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           +   +             +   V V+        W      +       +  +  + +++
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
           I +      GE      + A +      + +       L + Y      +M     L   
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPY----FRKMENQDALVCI 162

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
              +P P   W+       S            +             + +    N LG + 
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGREC 218

Query: 632 AS-FLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
              F + +   P      ++ + +G+ + + 
Sbjct: 219 TRLFTIDLNQTPQTTLP-QLFLKVGEPLWIR 248

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  119 bits (300), Expect = 3e-28
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 33/249 (13%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
             ++         +   +++           + R + +  AL           E +P P 
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALV-------CISESVPEPI 170

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA-RLRL 542
           V W     +  S + +           ++H+       +I+C A N  G   T+   + L
Sbjct: 171 VEWVLCDSQGESCKEESPAV-VKKEEKVLHEL---FGTDIRCCARNELGRECTRLFTIDL 226

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEIT--- 598
              P   LP+     L  ++GE + ++     +       W    + L  G  +E++   
Sbjct: 227 NQTPQTTLPQ-----LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 599 ---HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVM 652
                 R L   +S   R D G Y         +   S LVT+ ++             +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEI 338

Query: 653 TLGKSVTLS 661
              +    S
Sbjct: 339 DQYEEFCFS 347

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  104 bits (261), Expect = 2e-23
 Identities = 36/292 (12%), Positives = 76/292 (26%), Gaps = 51/292 (17%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
           F + WE    +  +      +E            +  M+      VS +       +  +
Sbjct: 258 FGLTWE---LENKA------LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH---DTTALEDEKVEFTVQVEGIPT 481
           +      S        +T+           FI A +   D    + E+  F+V+ +  P 
Sbjct: 309 SSKHPSQSAL------VTIV-------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ 355

Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
            + +W          ++      ++  ++          GE    A N          L 
Sbjct: 356 IRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411

Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-------NGEPLTSGGR 594
           +   P +                  +      G P P+  W           E +T G  
Sbjct: 412 IRRKPQV-----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVW 460

Query: 595 YEITHTDRY----LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
               +   +     +  ++ +        +    NSLG    + L+      
Sbjct: 461 NRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 1e-09
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
           ++   AEN             L +         P  +         E    + +   +G 
Sbjct: 392 EYIFHAENDDAQFT---KMFTLNIRR------KPQVLA--------EASASQASCFSDGY 434

Query: 480 PTPKVSWYKDG-----------FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
           P P  +W K               +++ +  R V    +S+  ++ +  +    +KC A 
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494

Query: 529 NRAGHSITKARLRLEAPPTI 548
           N  G S     L    P   
Sbjct: 495 NSLGTSCETILLNSPGPFPF 514

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  108 bits (272), Expect = 3e-28
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDIST 509
           A P+F  +L D +  E + V  +++V+G P P VSW ++   +    RR     +  +  
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           L I  A   D G   C A N  G    +ARL +  
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLT-SGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           G+ + + + + G P P   WL N +P+     R+          LRI  A R D G Y  
Sbjct: 20  GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79

Query: 622 HGVNSLGEDVASFLVTV 638
             VN  G       + V
Sbjct: 80  KAVNEYGARQCEARLEV 96

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  111 bits (280), Expect = 4e-28
 Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 15/196 (7%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           P       +    E + +                 W  + F +F +  +R         L
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARL--------RLEAPPTIRLPKQYEDGLLFEM 562
            I      D+G   C  ++ +      ++         R   P    +  Q++D      
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM- 127

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+ + L+    G P P  RW    EP+ S      +       L+I + +  D G Y+  
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECE 183

Query: 623 GVNSLGEDVASFLVTV 638
             N  G+D     + V
Sbjct: 184 AENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
              +            PL    +R+        +    D  AL  + V       G P P
Sbjct: 84  FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
            + W K    + S+    I T    + L I    L DEG  +C A N  G    +AR+ +
Sbjct: 144 DIRWRKVLEPMPSTA--EISTSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

Query: 543 EA 544
           +A
Sbjct: 200 QA 201

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  108 bits (271), Expect = 6e-28
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGPP KPQ+      + ++  T+ W+P    G  P   Y++E          +   + V
Sbjct: 15  LPGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
           + T   V GL P   Y F + A N  G S+P P+S+P+  T    P++ 
Sbjct: 70  KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR-TQDSGPSSG 117

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  108 bits (271), Expect = 6e-28
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGPP KPQ+      + ++  T+ W+P    G  P   Y++E          +   + V
Sbjct: 15  LPGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
           + T   V GL P   Y F + A N  G S+P P+S+P+  T    P++ 
Sbjct: 70  KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR-TQDSGPSSG 117

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  112 bits (282), Expect = 2e-27
 Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 22/228 (9%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTP 482
           T             +  L V        A S+     + T +E ++      +       
Sbjct: 69  TELEDPMAGS---TTIHLYV-----KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA---- 538
            VS  ++G      +     +       II +A ++D     C        S +      
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178

Query: 539 -RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE---PLTSGGR 594
                  PP I+L       L+   GE  ++  S           L  G+    +     
Sbjct: 179 VNRVHPEPPQIKLEPS---KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235

Query: 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           ++  +  +   L ++     D G Y     N +G   A+    V +  
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 93.5 bits (232), Expect = 6e-21
 Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           AP    +  +      E V       G     V W       ++        ++  STL 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD-----PESPGSTLT 54

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL--K 569
              A   + G  +CT         T   L ++ P            +    G+   L   
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLL--AQEVTVVEGQEAVLPCL 112

Query: 570 VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ--AHGVNSL 627
           ++       +   +  G               R     I  A+  D   Y      VN  
Sbjct: 113 IT-DPALKDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTM-VNGR 168

Query: 628 GEDVASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
                   + V      P       +K+V   G++  + 
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIV 207

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 88.1 bits (218), Expect = 4e-19
 Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 3/119 (2%)

Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG---F 491
              S  + +   R     P           +  E  +                K G    
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228

Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
           EI  +   +      +  L ++     D G   C A+N  G        ++        
Sbjct: 229 EIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score =  106 bits (266), Expect = 3e-27
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
           LTV        AP+    L + T    E +E +    G P P++ W+KD   +       
Sbjct: 3   LTVL----ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--G 56

Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
           IV  +    L I +    DEG   C A +  G +  +A   +E     
Sbjct: 57  IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE I++  + +G PPP   W  + E L       +   D   NL I   R+ D G Y   
Sbjct: 25  GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQ 82

Query: 623 GVNSLGEDVASFLVTVTDRPLPP 645
             + LG         +       
Sbjct: 83  ACSVLGCAKVEAFFIIEGAQEKT 105

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  106 bits (266), Expect = 3e-27
 Identities = 22/100 (22%), Positives = 34/100 (34%)

Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
            S ++ P  I+   D      E VE   +V G      +W K   +I  S   ++    +
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
            S L I  A     G       N+ G    +  L +   P
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  101 bits (253), Expect = 2e-25
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
            + P I    Q+ +      GE ++L   + G  P T  W+   + +      ++ +++ 
Sbjct: 5   SSGPQII---QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
              L I  AR+   G Y     N LG   A   +TV D+P PP
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  106 bits (266), Expect = 3e-27
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 527 ATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN 585
           ++  +G       +R +  PP IRLP+      + ++GE + L V   G P P   W   
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61

Query: 586 GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           G PL +  R  +  +D      +  A R+D GEY+        +D A+  + V ++ 
Sbjct: 62  GAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 430 GFSEPGPLSEPLTVTYQRSPAAAPSFIRALH---DTTALEDEKVEFTVQVEGIPTPKVSW 486
                G L++P+T+   R  A  P      H          E++   V  +G P P+V W
Sbjct: 2   SSGSSGTLAQPVTI---REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58

Query: 487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
            K G  +  + R  + T +  +   + QAA  D GE + +            R+R+    
Sbjct: 59  TKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  105 bits (265), Expect = 4e-27
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 402
            PG P KP +      +    F I W+PP+ +GG+ +  Y+VE     +   W       
Sbjct: 17  KPGIPVKPSVKGK---IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-- 71

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
               E +   L PG  Y+ R+   +  G S     SE L V        + 
Sbjct: 72  GATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPAVSGPSS 119

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  105 bits (265), Expect = 4e-27
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 741
            PG P KP +      +    F I W+PP+ +GG+ +  Y+VE     +   W       
Sbjct: 17  KPGIPVKPSVKGK---IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-- 71

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
               E +   L PG  Y+ R+   +  G S     SE L V        + 
Sbjct: 72  GATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPAVSGPSS 119

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  108 bits (271), Expect = 5e-27
 Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 29/207 (14%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRI---------V 502
             F+    + T           Q++     P+V W +DG  +  +   +           
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTI-RLPKQYEDGLLF 560
               +S L I    L D G+ +C         ++    + LE  P     P+        
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT----V 118

Query: 561 EMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
                  L     G P P    WL +  PL +   +    +     L +          +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-----LHVPGLN--KTSSF 171

Query: 620 QAHGVNSLGEDV-ASFLVTVTDRPLPP 645
                N+ G     +  +TV    LP 
Sbjct: 172 SCEAHNAKGVTTSRTATITV----LPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 76.1 bits (187), Expect = 8e-16
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 28/185 (15%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFR 422
            + W       G  +     +  +T  P         +  ++L ++ L+    G +YQ  
Sbjct: 34  EVHW----LRDGQILELA--DSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG-QYQ-- 84

Query: 423 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
                          S+P  V  +      P F+    D T   +     + Q +G P P
Sbjct: 85  CLVFLGHQTFV----SQPGYVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEP 136

Query: 483 -KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
             + W +D   + ++               +H   L       C A N  G + ++    
Sbjct: 137 VDLLWLQDAVPLATAPGH-------GPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATI 189

Query: 542 LEAPP 546
              P 
Sbjct: 190 TVLPQ 194

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 20/133 (15%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTD 601
           E  P +  P      +    G    L+  +     PP   WL +G+ L      +     
Sbjct: 1   EESPFVGNPGN----ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL 56

Query: 602 RYL---------NLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRP---LPPGKA 648
                        LRI+  + +D G+YQ          V     V +   P     P   
Sbjct: 57  GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP--E 114

Query: 649 KVVMTLGKSVTLS 661
              +       LS
Sbjct: 115 DRTVAANTPFNLS 127

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  108 bits (271), Expect = 8e-27
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
                 P  P +    P        ++++ PE  GG P+L Y  E R  G   W      
Sbjct: 3   LAQADTPSSPSIDQVEPYSST--AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60

Query: 741 MVE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPS 793
             E   +  + + GL+P   Y  R+ A N  G  E    S      T      +AP 
Sbjct: 61  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFKTQPVREPSAPK 114

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  107 bits (268), Expect = 2e-26
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
                P  P +    P        ++++ PE  GG P+L Y  E R  G   W       
Sbjct: 4   AQADTPSSPSIDQVEPYSST--AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61

Query: 403 VE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPS 454
            E   +  + + GL+P   Y  R+ A N  G  E    S      T      +AP 
Sbjct: 62  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFKTQPVREPSAPK 114

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 95.3 bits (237), Expect = 3e-22
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
            R P  P     +      D +   +     + DGGSP+  YLV +R   S  W      
Sbjct: 107 VREPSAPKLEGQM----GEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEIRL 160

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                 +M+  L+    Y+  + AEN  G S+    +  +  T
Sbjct: 161 PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA---AHFVFRT 200

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 95.3 bits (237), Expect = 3e-22
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 299 IIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYC------------------- 339
             E +   ++   +++ +     +     I GL   T  Y                    
Sbjct: 43  KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET-TYAVRLAALNGKGLGEISAASE 101

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
              +P   P  P+L       D +   +     + DGGSP+  YLV +R   S  W    
Sbjct: 102 FKTQPVREPSAPKL-EGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEI 158

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                   +M+  L+    Y+  + AEN  G S+    +  +  T
Sbjct: 159 RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA---AHFVFRT 200

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  110 bits (276), Expect = 2e-26
 Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 26/223 (11%)

Query: 460 HDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFE--IFSSRRQRIVTDNDISTLIIHQAA 516
               +  +E       +        ++WYKD  +  + + +  RI    +   L    A 
Sbjct: 13  IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAK 70

Query: 517 LMDEGEIKCTATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLK------ 569
           + D G   C   N +     K   + +E  P +    Q        +     L       
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130

Query: 570 VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629
                   P  +W  + +PL     +     DR   L + +     RG Y  H   +   
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLG 187

Query: 630 D------VASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
                  V  F+    ++P  P         + + LG  + L 
Sbjct: 188 KQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLI 230

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 99.4 bits (247), Expect = 1e-22
 Identities = 49/332 (14%), Positives = 81/332 (24%), Gaps = 57/332 (17%)

Query: 339 CVIKKPP----GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 394
           C  ++          +  + P   + +    TI W     D     +      R      
Sbjct: 6   CKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWY---KDDSKTPVSTEQASRIHQHKE 62

Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            +   P  VED     SG      Y       N         +          +      
Sbjct: 63  KLWFVPAKVED-----SG-----HYYC--VVRNSSYCLR---IKISAKF--VENEPNLCY 105

Query: 455 FIRALHDTTALEDEKVEFT------VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
             +A+                     + E    PK+ WYKD   +           +   
Sbjct: 106 NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--- 162

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---------APPTIRLPKQYEDGLL 559
            LI+   A    G   C A+             +E           P I  P    + + 
Sbjct: 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA--NETME 220

Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN------------LR 607
            ++G  I+L  ++ G     A W  NG  +               N            L 
Sbjct: 221 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 280

Query: 608 ISDARRAD-RGEYQAHGVNSLGEDVASFLVTV 638
           IS+      +  +     N+ G D A   +  
Sbjct: 281 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  103 bits (258), Expect = 2e-26
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P  P L  +      +  T+ W+ P      P  GY++E        +        
Sbjct: 6   SGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--G 62

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           ++T   V GL     Y  R+ A N  G S     S+   +  Q S  + PS
Sbjct: 63  KETMCTVDGLHFNSTYNARVKAFNKTGVSPY---SKT--LVLQTSEGSGPS 108

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  103 bits (258), Expect = 2e-26
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P  P L  +      +  T+ W+ P      P  GY++E        +        
Sbjct: 6   SGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--G 62

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           ++T   V GL     Y  R+ A N  G S     S+   +  Q S  + PS
Sbjct: 63  KETMCTVDGLHFNSTYNARVKAFNKTGVSPY---SKT--LVLQTSEGSGPS 108

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score =  103 bits (258), Expect = 3e-26
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           +     P  P +           F +       DGG+P+L Y+V++R             
Sbjct: 3   EASMREPSPPSIH--GQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKV 59

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
                 +++  L+    Y+ +ITA N +G+SEP              P          H
Sbjct: 60  QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-MPP---KPNIIKDHHHHHH 114

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score =  102 bits (257), Expect = 5e-26
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 7/117 (5%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P  P +           F +       DGG+P+L Y+V++R               
Sbjct: 5   SMREPSPPSIH--GQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQG 61

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
               +++  L+    Y+ +ITA N +G+SEP              P          H
Sbjct: 62  NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-MPP---KPNIIKDHHHHHH 114

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  103 bits (258), Expect = 3e-26
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P           +      + W  P  D     L Y V + + G       +    
Sbjct: 17  LPSAPRDVVA----SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP 72

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
            + ++ +  L P   Y FR+ A+N  G  E    S PL V  Q     + 
Sbjct: 73  GEMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVETQPESGPSS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  103 bits (258), Expect = 3e-26
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P           +      + W  P  D     L Y V + + G       +    
Sbjct: 17  LPSAPRDVVA----SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP 72

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
            + ++ +  L P   Y FR+ A+N  G  E    S PL V  Q     + 
Sbjct: 73  GEMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVETQPESGPSS 119

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score =  102 bits (257), Expect = 4e-26
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
             +    F  AL D   LE         +  +  P V W      +    +  +  +  +
Sbjct: 4   GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAM 62

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
             L++      D G   C      G   T A L + A P+
Sbjct: 63  LELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
             P   +  +  +D  + E G    L+  ++ +  P  +W +    L  G +Y +     
Sbjct: 6   SGPVRFQ--EALKDLEVLE-GGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGA 61

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
            L L + + R  D G Y      S G+   S  +TVT  P  P  
Sbjct: 62  MLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGPSS 102

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score =  102 bits (256), Expect = 4e-26
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           S ++    +  L D T    +++    ++         W K+G  +  S R ++V    I
Sbjct: 3   SGSSGLKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRI 60

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
             L+I  A   DEG+          +    A++ + + P+
Sbjct: 61  HKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+ I LK  ++   P    W  NG P+    R ++    R   L I++A   D G+Y   
Sbjct: 22  GKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF- 78

Query: 623 GVNSLGEDVASFLVTVTDRP 642
                        V V   P
Sbjct: 79  -APDAYNVTLPAKVHVISGP 97

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  103 bits (258), Expect = 4e-26
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP   +L   +  LD+ V  + W P   D  SP+  +++E+        +      V
Sbjct: 16  VPNPPFDLEL---TDQLDKSV-QLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70

Query: 404 EDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
             T+      L P   Y FR+ A N +G S P   SE    T    P   P+   +
Sbjct: 71  SGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPTSGPS 125

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  103 bits (258), Expect = 4e-26
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P PP   +L   +  LD+ V  + W P   D  SP+  +++E+        +      V
Sbjct: 16  VPNPPFDLEL---TDQLDKSV-QLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70

Query: 743 EDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
             T+      L P   Y FR+ A N +G S P   SE    T    P   P+   +
Sbjct: 71  SGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPTSGPS 125

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  105 bits (265), Expect = 5e-26
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PPGK  L+  + +      ++ WE PE+DGGS +LGY+VE +  GS  W   +   V
Sbjct: 102 RPLPPGKITLMDVTRN----SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--V 155

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
           + TE  ++GL  G  Y FR++A+N  G S+P  LS P+  
Sbjct: 156 KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  105 bits (263), Expect = 9e-26
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGPP   ++      + +   T+ W+PP  DGGS +  Y+VE R +    +   + +  
Sbjct: 5   TPGPPQDLKV----KEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-C 59

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
             T   V  L+ G  Y FR+ AEN  G   P   +E             P  I  
Sbjct: 60  HKTSWKVDQLQEGCSYYFRVLAENEYGIGLP---AETAESVKASERPLPPGKITL 111

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 90.9 bits (226), Expect = 7e-21
 Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 51/162 (31%)

Query: 624 VNSLGEDVASFLVTVT---DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
            N  G  + +         +RPLPPGK  ++     SV+LSW +PE              
Sbjct: 82  ENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEH------------- 128

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
                                            DGGS +LGY+VE +  GS  W   +  
Sbjct: 129 ---------------------------------DGGSRILGYIVEMQTKGSDKWATCAT- 154

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
            V+ TE  ++GL  G  Y FR++A+N  G S+P  LS P+  
Sbjct: 155 -VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 35/158 (22%), Positives = 45/158 (28%), Gaps = 50/158 (31%)

Query: 640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSL 699
           D P PP   KV      SVTL+W  P                                  
Sbjct: 4   DTPGPPQDLKVKEVTKTSVTLTWDPPLL-------------------------------- 31

Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 759
                         DGGS +  Y+VE R +    +   + +    T   V  L+ G  Y 
Sbjct: 32  --------------DGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYY 76

Query: 760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
           FR+ AEN  G   P   +E             P  I  
Sbjct: 77  FRVLAENEYGIGLP---AETAESVKASERPLPPGKITL 111

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score =  102 bits (256), Expect = 5e-26
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           +   + I+ L D      E VE   ++    TP V W KD   I  S++  +V +  ++ 
Sbjct: 6   SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           L+I  A+L D GE  C            A L +E   +
Sbjct: 65  LVIRGASLKDAGEYTCEVEASKS----TASLHVEEKAS 98

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
             P  I   K  ED  +   GE ++L+  ++    P   WL + + +    +Y++     
Sbjct: 6   SGPAAII--KPLEDQWVAP-GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
              L I  A   D GEY      S      +  + V ++   P
Sbjct: 62  MAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEKASGP 100

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  102 bits (255), Expect = 6e-26
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
            APSF   L D   +E +       V G P P+++W  +G  I  +R      +  ++ L
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAEL 66

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLR 541
            I  A   D G   C A N  G     A + 
Sbjct: 67  HIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
           +     +E  P+     +  D  + E G+   L+ S+ G P P   WL NG+P+      
Sbjct: 2   SSGSSGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58

Query: 596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
                     L I DA   D G Y     N+LG+   S  VTV
Sbjct: 59  ---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score =  102 bits (255), Expect = 6e-26
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
             + A  F   L +    E     FT + E  P   V+W K   E+ +S + +   +   
Sbjct: 4   GSSGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLT 62

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
             L I      D     C      G + ++A+L ++   +
Sbjct: 63  LRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRS 98

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
                        P  T  W      L + G+++ +     L L IS   +AD   Y   
Sbjct: 23  KGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC- 80

Query: 623 GVNSLGEDVASFLVTVTDRPLPP 645
               +G+  +   + V  R   P
Sbjct: 81  ---DIGQAQSRAQLLVQGRRSGP 100

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score =  101 bits (254), Expect = 1e-25
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDIS 508
                 I  L D    E     F  ++       V W+ D   + ++    I        
Sbjct: 11  GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
            L + Q AL D G I       AG     A LR+   P++
Sbjct: 71  VLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSV 106

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 65.1 bits (159), Expect = 7e-13
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
           + +   ++    + + +  ED  + E G     +  ++        W  +  PL +    
Sbjct: 3   SGSSGLVQGRR-VHIIEDLEDVDVQE-GSSATFRCRISPANYEPVHWFLDKTPLHANELN 60

Query: 596 EITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           EI      Y  L +      D G          G+  AS  + VT++P
Sbjct: 61  EIDAQPGGYHVLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKP 104

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score =  100 bits (251), Expect = 2e-25
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP    +   + +    V T+ W+        PV  Y +++R  G+    +     V
Sbjct: 7   GPKPPIDLVV---TETTATSV-TLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-V 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             T   + GL P   Y FR+ A N +G   P   SE +         + PS
Sbjct: 59  ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPP---SEAVRAR--TGEQSGPS 104

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score =  100 bits (251), Expect = 2e-25
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P PP    +   + +    V T+ W+        PV  Y +++R  G+    +     V
Sbjct: 7   GPKPPIDLVV---TETTATSV-TLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-V 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             T   + GL P   Y FR+ A N +G   P   SE +         + PS
Sbjct: 59  ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPP---SEAVRAR--TGEQSGPS 104

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  111 bits (279), Expect = 3e-25
 Identities = 49/332 (14%), Positives = 83/332 (25%), Gaps = 67/332 (20%)

Query: 473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTATN 529
            V+V   P     W   G    +  R  +       +   +I        +G +      
Sbjct: 97  YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156

Query: 530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL 589
             GH  T+        P     +  E       G+    + S  G      R    G  +
Sbjct: 157 VLGHPCTR-------TPHFLRIQNVE----VNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205

Query: 590 TSGGRYEITHTDRY---LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
                 EI  T       +  + +  + D G+Y+       G  ++++   V   P    
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP---- 261

Query: 647 KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTI 706
                                                P P   PQL     +       I
Sbjct: 262 -------------------------------------PVPIAPPQLASVGAT----YLWI 280

Query: 707 RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN 766
           +      +G  P++   VE+       W    P  V+ T   +  L+P   Y+  +    
Sbjct: 281 QLNANSINGDGPIVAREVEYCTASGS-WNDRQP--VDSTSYKIGHLDPDTEYEISVLLTR 337

Query: 767 VVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 797
                  G     L   T    P   P  +  
Sbjct: 338 PGEGG-TGSPGPALRTRTKCADPMRGPRKLEV 368

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 99.5 bits (247), Expect = 2e-21
 Identities = 55/500 (11%), Positives = 113/500 (22%), Gaps = 72/500 (14%)

Query: 330 GLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR 389
           G+ +      V+K+PP P   PQL     +       I+      +G  P++   VE+  
Sbjct: 247 GVGISNYAELVVKEPPVPIAPPQLASVGAT----YLWIQLNANSINGDGPIVAREVEYCT 302

Query: 390 TGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRS 448
                W    P  V+ T   +  L+P   Y+  +           G     L   T    
Sbjct: 303 ASGS-WNDRQP--VDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCAD 358

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
           P   P  +        ++    + T++ E  P          + +      ++     + 
Sbjct: 359 PMRGPRKLEV----VEVKSR--QITIRWE--PFGYNVTRCHSYNLTVHYCYQVGGQEQVR 410

Query: 509 TLIIHQAA-----LMDEG-------EIKCTATNRAGH---SITKARLRLEAPPTIRLPKQ 553
             +                       +K    N  G         +   + P  +     
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESI 470

Query: 554 YEDGLLFEM-----------GEIIKLKVSM--AGMPPPTARWLHNGEPLTSGG---RYEI 597
                  ++           G I   +++        P     +    ++  G    +  
Sbjct: 471 QGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLF 530

Query: 598 THTDRYLN--LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG--KAKVVMT 653
                       I            A      G    +   T    P  P       +  
Sbjct: 531 FGLYPGTTYSFTIR-----------ASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQ 579

Query: 654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY 713
              +VT+        G   +  Y +       P    +              I ++    
Sbjct: 580 TDNTVTVMLKPAHSRGA-PVSVYQIVV-EEERPRRTKKTTEILKC---YPVPIHFQNASL 634

Query: 714 DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
                            +        +         + L P   Y+    A +       
Sbjct: 635 LNSQYYFAAEFPADSLQAAQPFTIGDNK-TYNGYWNTPLLPYKSYRIYFQAASRAN---G 690

Query: 774 GPLSEPLTVTYQRSPAAAPS 793
               + + V  + +    P 
Sbjct: 691 ETKIDCVQVATKGAATPKPV 710

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 93.7 bits (232), Expect = 1e-19
 Identities = 56/488 (11%), Positives = 118/488 (24%), Gaps = 84/488 (17%)

Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIR-----WEPPEYDGGSPVLGYLVEHR 388
            +  + ++     P G+   L      + D   I              G   +   V + 
Sbjct: 44  PSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNG 103

Query: 389 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 448
             G+P W  +           ++ +   W   +++  E +    +     + + V     
Sbjct: 104 PLGNPIWNISGDPTRTWNRAELA-ISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH-- 160

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF---SSRRQRIVTDN 505
           P         + +      +   F     G        +  G ++        +   +  
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGE 564
            I++  +      D G+ +C      G  I+  A L ++ PP    P Q           
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA--------S 272

Query: 565 IIKLKVSMAGMPPPTARWLHNGEPL-------TSGGRYEITHTDRYLNLRISDARRADRG 617
           +    + +            +G  +       T+ G +         + +I         
Sbjct: 273 VGATYLWIQLNANS---INGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEY 329

Query: 618 EYQ--AHGVNSLGEDVASFLVTVTDRPLPPGKA----KVVMTLGKSVTLSWSEPEDDGG- 670
           E           G       +    +   P +     +VV    + +T+ W     +   
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389

Query: 671 CKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 730
           C   N  V Y    G                                             
Sbjct: 390 CHSYNLTVHYCYQVGG------------------------------------------QE 407

Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPA 789
                 +        +  ++ L P      ++   N  G       S+ L V T +  P 
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG---RKE-SQELIVQTDEDLPG 463

Query: 790 AAPSFIRA 797
           A P+    
Sbjct: 464 AVPTESIQ 471

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 70.6 bits (172), Expect = 2e-12
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 11/128 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               PG         S   +   ++W  P    G  +  Y + ++   S        +  
Sbjct: 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQS 516

Query: 743 E-------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI 795
                   +T  +  GL PG  Y F I A    GF   GP +     T   +P+     +
Sbjct: 517 GRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF---GPPATNQFTTKISAPSMPAYEL 573

Query: 796 RALHDTTA 803
               + T 
Sbjct: 574 ETPLNQTD 581

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  107 bits (268), Expect = 5e-25
 Identities = 63/464 (13%), Positives = 111/464 (23%), Gaps = 121/464 (26%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PP    L  +  +    V T+ WE         + GY +    T           + 
Sbjct: 1   PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54

Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
            D +      L PG  Y   +        S P        +         P+ +R  +  
Sbjct: 55  ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIP----AVPPPTDLRFTNIG 107

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD--E 520
                      V     P+  ++ +   +    +           S    +   L +   
Sbjct: 108 PD------TMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSD---NAVVLTNLLP 158

Query: 521 G---EIKCTATNRAGHS---ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
           G    +  ++      S     + +  L++P  I       +                  
Sbjct: 159 GTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSF---------------- 202

Query: 575 MPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHG---------- 623
               T  W+     +T    Y I  H + +      D     R                 
Sbjct: 203 ----TVHWIAPRATITG---YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 255

Query: 624 ---VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
              +N   E         +     P   +VV     S+ +SW  P               
Sbjct: 256 IVALNGREESPLLI-GQQSTVSDVPRDLEVVAATPTSLLISWDAPA-------------- 300

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
                                                 V  Y + +  TG    V+    
Sbjct: 301 ------------------------------------VTVRYYRITYGETGGNSPVQEFTV 324

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
               +   +SGL+PG  Y   + A    G S     S+P+++ Y
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPISINY 366

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 44/283 (15%), Positives = 77/283 (27%), Gaps = 76/283 (26%)

Query: 581 RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG-------------VNSL 627
            W  +  P  +G R   T T+      + +   AD+                    V   
Sbjct: 22  SWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDD 81

Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY------- 680
            E V      +   P PP   +       ++ ++W+ P       + N++V Y       
Sbjct: 82  KESVPISDTIIPAVP-PPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEE 137

Query: 681 --------------------------FR-------PPGPP--GKPQLLPDSPS------L 699
                                                  P  G+ +   DSP+      +
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 197

Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 759
             + FT+ W  P     + + GY + H         R          + ++ L PG  Y 
Sbjct: 198 TANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYV 253

Query: 760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
             I A N            PL +  Q + +  P  +  +  T 
Sbjct: 254 VSIVALNGRE-------ESPLLIGQQSTVSDVPRDLEVVAATP 289

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
           A+ G      L          P   +++  +P+       I W+ P       V  Y + 
Sbjct: 258 ALNGREESPLLIGQQSTVSDVPRDLEVVAATPT----SLLISWDAPA----VTVRYYRIT 309

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
           +  TG    V+        +   +SGL+PG  Y   + A    G S     S+P+++ Y
Sbjct: 310 YGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPISINY 366

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 328 ITGLNVGTD----LYCVIKKPPGPP--GKPQLLPDSPS------LDRDVFTIRWEPPEYD 375
           +T L  GT+    +  V ++    P  G+ +   DSP+      +  + FT+ W  P   
Sbjct: 153 LTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR-- 210

Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435
             + + GY + H         R          + ++ L PG  Y   I A N        
Sbjct: 211 --ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE----- 263

Query: 436 PLSEPLTVTYQRSPAAAPSFIRALHDTT 463
               PL +  Q + +  P  +  +  T 
Sbjct: 264 --ESPLLIGQQSTVSDVPRDLEVVAATP 289

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 14/137 (10%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
            +        +   I     PP   +     P    D   + W PP       +  +LV 
Sbjct: 77  TVKDDKESVPISDTIIPAVPPPTDLRFTNIGP----DTMRVTWAPPP---SIDLTNFLVR 129

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
           +    +   V        D  ++++ L PG  Y   +++      S P           Q
Sbjct: 130 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-------LRGRQ 182

Query: 447 RSPAAAPSFIRALHDTT 463
           ++   +P+ I     T 
Sbjct: 183 KTGLDSPTGIDFSDITA 199

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 28/215 (13%), Positives = 49/215 (22%), Gaps = 71/215 (33%)

Query: 642 PLPPGKAKVVMTLGKS-VTLSWSEPEDDGGCKIGNYIVEY-------------------- 680
             PP    +        +T+SW          I  Y +                      
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 681 --------------FR-------------------PPGPPGKPQLLPDSPSLDRDVFTIR 707
                                                 PP   +     P    D   + 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP----DTMRVT 114

Query: 708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 767
           W PP       +  +LV +    +   V        D  ++++ L PG  Y   +++   
Sbjct: 115 WAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 171

Query: 768 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
              S P           Q++   +P+ I     T 
Sbjct: 172 QHESTP-------LRGRQKTGLDSPTGIDFSDITA 199

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 10/107 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PP    L  +  +    V T+ WE         + GY +    T           + 
Sbjct: 1   PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54

Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
            D +      L PG  Y   +        S P        +     P
Sbjct: 55  ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPAVPPP 98

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  105 bits (263), Expect = 6e-25
 Identities = 45/332 (13%), Positives = 81/332 (24%), Gaps = 46/332 (13%)

Query: 321 YVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRW----EPPEY 374
            V+    + G  +G    L C ++ P                   V  + W    E    
Sbjct: 3   VVQAPTQVPGF-LGDSVTLPCYLQVPNMEVTH-------------VSQLTWARHGESGSM 48

Query: 375 DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFRITAENVVGF 431
                  G      +       R    +  +  L + GL     G  Y            
Sbjct: 49  AVFHQTQGPSYSESKRLEFVAARLGAEL-RNASLRMFGLRVEDEGN-YTCLFVT------ 100

Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDG 490
              G  S  + +       A P     +       +           G P  +++W+ D 
Sbjct: 101 FPQGSRSVDIWLRVL----AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156

Query: 491 FEIFSSRRQRIVTDNDI---STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
             + ++ +        +   S  I+  ++ +D   + C   + +        + L     
Sbjct: 157 GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216

Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNL 606
             +     D   +       L       P PT   W     PL                L
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----AVAQGA--QL 270

Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
            I    +        +  N+LG   A   V V
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 83.6 bits (206), Expect = 2e-17
 Identities = 28/238 (11%), Positives = 62/238 (26%), Gaps = 33/238 (13%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTP-----KVSWYKDGFEI---------------- 493
            ++A         + V     ++          +++W + G                   
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 494 --FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRL 550
                   R+  +   ++L +    + DEG   C        S +    LR+ A P    
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN-- 120

Query: 551 PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL---NLR 607
             + +   L      +   VS  G PP    W  +   + +  +     +          
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 608 ISDARRADRGEY--QAHGVNSLGEDVASFLVTV--TDRPLPPGKAKVVMTLGKSVTLS 661
           +  + + D      +    +     + +  +TV         G            TL+
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT 238

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 99.2 bits (247), Expect = 1e-24
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG------------ 391
              PP  P +   S   D  V  +RW  P  + G P++ + V++R  G            
Sbjct: 2   STYPPTPPNVTRLS---DESV-MLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNI 56

Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451
                + +  + +     V+ L+P   Y+FRI A      ++    S    +     P A
Sbjct: 57  PYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL----QPGA 112

Query: 452 A 452
           A
Sbjct: 113 A 113

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 99.2 bits (247), Expect = 1e-24
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG------------ 730
              PP  P +   S   D  V  +RW  P  + G P++ + V++R  G            
Sbjct: 2   STYPPTPPNVTRLS---DESV-MLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNI 56

Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 790
                + +  + +     V+ L+P   Y+FRI A      ++    S    +     P A
Sbjct: 57  PYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL----QPGA 112

Query: 791 A 791
           A
Sbjct: 113 A 113

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-----VRA 398
            PGPP    +   S    R V T+++ P  YDG + +  +LVE +            +  
Sbjct: 17  LPGPPTNLGI---SNIGPRSV-TLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 71

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
             +  +   + V  L P   Y FR+   N+VG S P   S  +  T Q  P++ 
Sbjct: 72  LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-TLQSGPSSG 124

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-----VRA 737
            PGPP    +   S    R V T+++ P  YDG + +  +LVE +            +  
Sbjct: 17  LPGPPTNLGI---SNIGPRSV-TLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 71

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
             +  +   + V  L P   Y FR+   N+VG S P   S  +  T Q  P++ 
Sbjct: 72  LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-TLQSGPSSG 124

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 448 SPAAAPSFIRALHD-TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
           S ++  +F + L       +  +V F V++   P  +V WYK+G EI  S +        
Sbjct: 3   SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
              L I+   + D+ E        AG       L + + P+
Sbjct: 62  QRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSGPS 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 543 EAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
            +       L   Y+     + G  ++  V +A  P    +W  NG+ +    +Y   H 
Sbjct: 5   SSGAAFAKILDPAYQ----VDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHK 59

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
                L I++ +  D  EY      + G++  S  + V   P
Sbjct: 60  GCQRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSGP 97

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
             +     ++ + D T    E+  F  +V         WYK+G E+  S+R  I      
Sbjct: 4   GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
             L+I      DEG+        A      A+L         
Sbjct: 63  HKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
            E    K  ++     T +W  NG  +    R  I+H  R+  L I D R  D G+Y   
Sbjct: 23  AEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81

Query: 623 GVNSLGEDVASFLVTVTDRP 642
                     S  +   +  
Sbjct: 82  PDGYALS--LSAKLNFLEIK 99

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P  P++     +  ++  T++W+ P  D GS +  +++E    G         +M 
Sbjct: 17  EPDIPNPPRIA----NRTKNSLTLQWKAP-SDNGSKIQNFVLE-WDEGKGNGEFCQCYMG 70

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
              +  ++ L P    +FR++A N  G S     SE   V Y  S  + PS
Sbjct: 71  SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEE--VLYYTSGCSGPS 116

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P  P++     +  ++  T++W+ P  D GS +  +++E    G         +M 
Sbjct: 17  EPDIPNPPRIA----NRTKNSLTLQWKAP-SDNGSKIQNFVLE-WDEGKGNGEFCQCYMG 70

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              +  ++ L P    +FR++A N  G S     SE   V Y  S  + PS
Sbjct: 71  SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEE--VLYYTSGCSGPS 116

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
             +      + L     LE E   F   +     +    W   G  + SS R +      
Sbjct: 4   GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR 63

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
              L++ +AA  D GE+  +         +KA L +      
Sbjct: 64  KYILVVREAAPSDAGEVVFS----VRGLTSKASLIVRERSGP 101

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 563 GEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           GE    +  ++       A W   G+ + S  R++ T   R   L + +A  +D GE   
Sbjct: 23  GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82

Query: 622 HGVNSLGEDVASFLVTVTDRPLPP 645
               S+    +   + V +R  P 
Sbjct: 83  ----SVRGLTSKASLIVRERSGPS 102

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 97.1 bits (242), Expect = 4e-24
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           +    F + L    A E        ++       V W K    +    R  +  D     
Sbjct: 6   SGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           L IH  ++ D GE  C      G   T A L + A P 
Sbjct: 64  LQIHDLSVADAGEYSC----MCGQERTSATLTVRALPA 97

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
             P      +  +     E G    L+  ++        W    E L  GGRY +     
Sbjct: 6   SGPARFT--QDLKTKEASE-GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGT 60

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
              L+I D   AD GEY        G++  S  +TV   P
Sbjct: 61  RCELQIHDLSVADAGEYSC----MCGQERTSATLTVRALP 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 96.2 bits (240), Expect = 5e-24
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
               +      E   V++  ++E      +V+WY    ++ +S +  I  ++ ++ L + 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63

Query: 514 QAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
               +D+G  +C   N  G   + A L ++   
Sbjct: 64  DITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           G  +K    +      T   W      L +  +YEIT+ D    L + D  + D G Y+ 
Sbjct: 16  GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75

Query: 622 HGVNSLGEDVASFLVTV 638
             VN  GED +   + V
Sbjct: 76  KVVNDYGEDSSYAELFV 92

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  102 bits (255), Expect = 6e-24
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 14/203 (6%)

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
              A  +     +    ED+       +   +    VS  +              +    
Sbjct: 86  KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH- 144

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKA-----RLRLEAPPTIRLPKQYEDGLLFEM 562
               IH+A  +   + +C+A       ++ +     +  +  PP + L     + +    
Sbjct: 145 -GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA--ELVRIR- 200

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN---LRISDARRADRGEY 619
           GE  ++  S + +      +L +     +  +    H +RY     L +        G Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260

Query: 620 QAHGVNSLGEDVASFLVTVTDRP 642
                N  G+   S    V +  
Sbjct: 261 SCVASNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 93.9 bits (233), Expect = 5e-21
 Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 22/219 (10%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           + P    ++ +        V       G     V W         S    + +D   S L
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGP-----PSPHWTLYSDGSSSIL 53

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK- 569
             + A   + G  +CT             L ++ P         E  ++    +   L  
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE--VVVFEDQDALLPC 111

Query: 570 VSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
           +    +       +   G PL     Y  +         I  A+     +YQ   +    
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGR 168

Query: 629 EDV-ASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
           + +  S  + V      P       A++V   G++  + 
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIV 207

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 87.7 bits (217), Expect = 5e-19
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 7/134 (5%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
           +A           +S  + +  Q+     P+      +   +  E  +       +    
Sbjct: 162 SALMGGR----KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF 217

Query: 484 VSWYKDGFEIFSSRRQRIVTDNDI---STLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
             + +      +  +Q    +N      TL + Q      G   C A+N  G   T    
Sbjct: 218 DVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277

Query: 541 RLEAPPTIRLPKQY 554
           R+           +
Sbjct: 278 RVVESAGNSHHHHH 291

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 96.7 bits (241), Expect = 7e-24
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P     +  S         + W PP  +    +  + V   R G       +    
Sbjct: 17  LPSAPRDVVPVLVSSR----FVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQP 71

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
              +L V  L+P   Y FR+ A N  G   PG  S+P+ V     P + PS
Sbjct: 72  GSLQLTVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVA--TQPESGPS 117

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 96.7 bits (241), Expect = 7e-24
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P     +  S         + W PP  +    +  + V   R G       +    
Sbjct: 17  LPSAPRDVVPVLVSSR----FVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQP 71

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              +L V  L+P   Y FR+ A N  G   PG  S+P+ V     P + PS
Sbjct: 72  GSLQLTVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVA--TQPESGPS 117

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  102 bits (256), Expect = 8e-24
 Identities = 56/350 (16%), Positives = 91/350 (26%), Gaps = 48/350 (13%)

Query: 309 TADNQFENQAPLYVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFT 366
           T   Q        V++ +++ G  +GTD  L+C    P                   +  
Sbjct: 5   TGGQQMGRDPSQVVQVNDSMYGF-IGTDVVLHCSFANPLPSV--------------KITQ 49

Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTG----SPYWVRAS--PHMVEDTELMVSGLEP---GW 417
           + W+              + +   G    +PY  R         D  + +S LE    G 
Sbjct: 50  VTWQ---KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGV 106

Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIRALHDTTALEDEKVEFTVQV 476
            Y               G     L +T    P          L      +D+ +  T   
Sbjct: 107 -YICEFATFPT------GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS 159

Query: 477 -EGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
             G P   VSW         +   R    T   IS   +  +    +  + C        
Sbjct: 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR 219

Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSG 592
                 L ++  P + +     DG  +     +KL       PP T   W      L  G
Sbjct: 220 FKESLTLNVQYEPEVTIEGF--DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG 277

Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
              +                 +  G Y     N +G       V +T+  
Sbjct: 278 VEAQNRTL-----FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 64.4 bits (156), Expect = 5e-11
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 16/128 (12%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEGIPTP 482
                +   +    S  L V Y       P   I        L+   V+ T + +  P  
Sbjct: 212 IVNYHMDRFKE---SLTLNVQY------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPA 262

Query: 483 -KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
            +  W      +     + +   N  +            G   C ATN  G    +  + 
Sbjct: 263 TEYHWTTLNGSL----PKGVEAQNR-TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317

Query: 542 LEAPPTIR 549
           +     + 
Sbjct: 318 ITEAAALE 325

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P     PQ+   S +       + WE P    G+ V  Y +E         +       
Sbjct: 7   GPDQCKPPQVTCRSAT----CAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICYC---G 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                 + GL P   Y  R+ A +VVG      +   +T      P++ PS
Sbjct: 59  PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT-----PPSSGPS 104

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P     PQ+   S +       + WE P    G+ V  Y +E         +       
Sbjct: 7   GPDQCKPPQVTCRSAT----CAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICYC---G 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                 + GL P   Y  R+ A +VVG      +   +T      P++ PS
Sbjct: 59  PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT-----PPSSGPS 104

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score =  101 bits (252), Expect = 2e-23
 Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 40/274 (14%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGI-PTPK---VSWYKDGFEIFSSRRQRIVTDNDI 507
           A +     +    L  +    T  V G  P P     +W KD              +N+ 
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENNT 51

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           +TL +  A   + G  K T  +    +  ++ + L     + +               ++
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111

Query: 568 LKVS---MAGMPPP-----TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
           L  +     G  P         W    + + +             ++ I +      G Y
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVY 160

Query: 620 QAHGVNSLGEDVASFLVTVTDRPLPPGK---AKVVMTLGKSVTLSWSEPEDDGGCKIG-- 674
                    +  AS    +    +   +       + LG  ++L++   ED  G   G  
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMP 220

Query: 675 NYIVEY--FRPPGPPGKPQLLPDSPSLDRDVFTI 706
           N  ++Y  +        P L+        + F+I
Sbjct: 221 NLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSI 254

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 67.5 bits (164), Expect = 4e-12
 Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 44/246 (17%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-- 477
            +++T ++    +      E      + +       I             VE    V+  
Sbjct: 66  SYKVTVQDTDTMTS----VESEVFLMEEAEL--IVNITEPQHFYVSSQTDVELHATVKFS 119

Query: 478 -GIPTPKV-----SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531
            G           SW K    I ++             + I +      G         +
Sbjct: 120 GGKTPADNYELHYSWSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGES 168

Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA--------GMPPPTAR-- 581
             S   A  ++       + +   +     +G  I L   ++        GMP  T +  
Sbjct: 169 EDSAASASTKIMLATMN-VDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227

Query: 582 WLHNGE----PLTSGGRYEITHTDRYL----NLRISDARRADRGEYQAHGVNSLGEDVAS 633
           W    E    P   G           +    +L    A   D  ++          +  +
Sbjct: 228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287

Query: 634 FLVTVT 639
             V  +
Sbjct: 288 VEVAAS 293

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 95.2 bits (237), Expect = 2e-23
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
            ++   +        A+  E+V  T ++   P  +V W KDG E+  S    +  ++ + 
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDG 557
            L++    L D GE  C   + +        + +  PP   +      G
Sbjct: 69  RLVLPAVQLEDSGEYLCEIDDES----ASFTVTVTEPPVRIIYSGPSSG 113

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
           +    I  P            E + L       P    RW  +GE +       +   D 
Sbjct: 9   DVSSWIVYPSGKVYVAAVR-LERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
              L +   +  D GEY       + ++ ASF VTVT+ P
Sbjct: 67  VRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPP 102

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
            A     + L+       E   F +++   P     W   G  + +S    I+ D     
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           LI+H   L   GE+   A N    + + A L+++ 
Sbjct: 62  LILHNCQLGMTGEVSFQAAN----TKSAANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           A   I + K      +F  GE    ++ ++  P    +W   G+PL +    EI    + 
Sbjct: 2   AMALIEVEKPLYGVEVFV-GETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 604 LNLRISDARRADRGEYQA 621
             L + + +    GE   
Sbjct: 60  HILILHNCQLGMTGEVSF 77

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 97.5 bits (243), Expect = 4e-23
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRA 398
           +++  P  P    +   +         I WE    D  SP+L Y ++   + +P  W  A
Sbjct: 1   IVQDVPNAPKLTGITCQADKA-----EIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAA 54

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
              +       V  + P   Y FR+ A N +G S P   S+  T T    P   P  +  
Sbjct: 55  YEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT-TQPDVPFKNPDNVVG 113

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 96.3 bits (240), Expect = 1e-22
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM 741
            P  P    +   +         I WE    D  SP+L Y ++   + +P  W  A   +
Sbjct: 5   VPNAPKLTGITCQADKA-----EIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKV 58

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
                  V  + P   Y FR+ A N +G S P   S+  T T    P   P  +  
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT-TQPDVPFKNPDNVVG 113

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 94.0 bits (234), Expect = 8e-22
 Identities = 30/208 (14%), Positives = 49/208 (23%), Gaps = 70/208 (33%)

Query: 638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV------------------- 678
           V D P  P    +         + W +   D    I +Y +                   
Sbjct: 2   VQDVPNAPKLTGITCQ-ADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59

Query: 679 --------------EY-FR-------------------------PPGPPGKPQLLPDSPS 698
                          Y FR                         P   P         P+
Sbjct: 60  NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN 119

Query: 699 LDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGW 756
                  I W P PE +  +P   Y V  +R      W   +        ++++      
Sbjct: 120 ----NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175

Query: 757 RYQFRITAENVVGFSEPGPLSEPLTVTY 784
           +Y  ++ A N  G      ++    V Y
Sbjct: 176 KYLIKVVAINDRG---ESNVAAEEVVGY 200

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 9/104 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPY-WVRASPH 401
           P   P         P+       I W P PE +  +P   Y V  +R      W   +  
Sbjct: 104 PFKNPDNVVGQGTEPN----NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF 159

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
                 ++++      +Y  ++ A N  G      ++    V Y
Sbjct: 160 DWRQNNIVIADQPTFVKYLIKVVAINDRG---ESNVAAEEVVGY 200

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 94.4 bits (235), Expect = 5e-23
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
           LTV      A    F   L +  A E        ++       V W+K    +    R  
Sbjct: 13  LTVR-----ALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHS 65

Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
           +  D     L I      D GE  C      G   T A L + A P+
Sbjct: 66  LRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 529 NRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
           +      T A L     P      +   +    E G    L+  ++ M P    W    E
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFT--EGLRNEEATE-GATAVLRCELSKMAPVE--WWKGHE 56

Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
            L  G R+ +        L+I      D GEY        G++  S ++TV   P  P
Sbjct: 57  TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGP 110

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 93.5 bits (233), Expect = 6e-23
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDN 505
           S ++     + L DTTA   E+VE   +V       V W+K+G EI      R RI  + 
Sbjct: 3   SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
               LII  A   D  E     T       + A+L ++  
Sbjct: 62  KKHILIIEGATKADAAEYSVMTTGGQ----SSAKLSVDLK 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQ 620
           GE ++L+  ++       +W  NGE +  G   RY I    +   L I  A +AD  EY 
Sbjct: 22  GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80

Query: 621 AHGVNSLGEDVASFLVTVTDRPLPP 645
                      +S  ++V  +  P 
Sbjct: 81  V----MTTGGQSSAKLSVDLKSGPS 101

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 92.8 bits (231), Expect = 8e-23
 Identities = 13/90 (14%), Positives = 22/90 (24%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
            P  + A               V   G P P  +W         +    +   +  +++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLR 541
              A   D G  K    N  G       + 
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
            P I    +    +  + G    L+V   G P PTA W              +       
Sbjct: 2   KPKILTASR---KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           ++    A+RAD G Y+    N LGED A F V V
Sbjct: 59  SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               PG+P ++  + +   +   ++W PP+   G  +LGY +++ R              
Sbjct: 4   GSSGPGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-K 59

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           +D    V+GL  G  Y FR+ A+N  G  E     E    T +       S
Sbjct: 60  DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRTPEDLS-GPSS 106

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               PG+P ++  + +   +   ++W PP+   G  +LGY +++ R              
Sbjct: 4   GSSGPGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-K 59

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           +D    V+GL  G  Y FR+ A+N  G  E     E    T +       S
Sbjct: 60  DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRTPEDLS-GPSS 106

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 97.3 bits (242), Expect = 2e-22
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 461 DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
             +  ++E V    +V  +P      W+ +G    +S            +  I  A++ D
Sbjct: 10  WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVND 59

Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPP 578
            GE +C     +G S             +++  +      F  GE + L+  +       
Sbjct: 60  SGEYRCQRGL-SGRSDPIQLEIHRGWLLLQVSSRV-----FTEGEPLALRCHAWKDKLVY 113

Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
              +  NG+        +  H +   NL I     +  G Y   G+       A   VTV
Sbjct: 114 NVLYYRNGKAF------KFFHWNS--NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV 165

Query: 639 TDRPLPPG---KAKVVMTLGKSVTLS 661
            +    P         +  G  VTLS
Sbjct: 166 KELFPAPVLNASVTSPLLEGNLVTLS 191

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 86.1 bits (213), Expect = 1e-18
 Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 19/207 (9%)

Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEI 493
              S+P+ +   R        +  +      E E +              V +Y++G   
Sbjct: 70  SGRSDPIQLEIHR-----GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124

Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQ 553
                         S L I +  +   G   C+   +  ++     + ++      +   
Sbjct: 125 KFFHWN--------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNA 176

Query: 554 YEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR 613
                L E G ++ L      +       L+        G   +   +     +I  ARR
Sbjct: 177 SVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSF---YMGSKTLRGRNTSSEYQILTARR 232

Query: 614 ADRGEYQAHGVNSLGEDV-ASFLVTVT 639
            D G Y        G  +  S  + + 
Sbjct: 233 EDSGLYWCEAATEDGNVLKRSPELELQ 259

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 21/125 (16%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP- 482
           +      ++     S  ++VT +         + A   +  LE   V  + + + +    
Sbjct: 149 SGMGKHRYT-----SAGISVTVKELFP--APVLNASVTSPLLEGNLVTLSCETKLLLQRP 201

Query: 483 ----KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
                 S+Y         +  R    +  S   I  A   D G   C A    G ++ K 
Sbjct: 202 GLQLYFSFYMGS------KTLRGRNTS--SEYQILTARREDSGLYWCEAATEDG-NVLKR 252

Query: 539 RLRLE 543
              LE
Sbjct: 253 SPELE 257

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
             +  P   +   + T   D     +    G P P + W KDG  + +   +    +N  
Sbjct: 4   GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-- 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
             L I  A L D G   C A+  +G +   A + ++       P
Sbjct: 62  GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.2 bits (159), Expect = 8e-13
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
            PP IR            +     L     G P PT  W  +G  + T   R +      
Sbjct: 7   GPPVIRQGPVN---QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG- 62

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
              L+I  A+  D G Y        GE   S  + V +  +P 
Sbjct: 63  --VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPV 103

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 92.3 bits (229), Expect = 3e-22
 Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 12/119 (10%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-- 400
                P  P +  +  +   D  T+ W          +  Y +++          +    
Sbjct: 11  DYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNS 67

Query: 401 -------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
                    ++     V GL+ G RY F + A N  G     P          +S  ++
Sbjct: 68  VDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPSS 126

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 91.9 bits (228), Expect = 5e-22
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 12/118 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--- 739
               P  P +  +  +   D  T+ W          +  Y +++          +     
Sbjct: 12  YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSV 68

Query: 740 ------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
                   ++     V GL+ G RY F + A N  G     P          +S  ++
Sbjct: 69  DSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPSS 126

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 97.1 bits (241), Expect = 4e-22
 Identities = 26/202 (12%), Positives = 59/202 (29%), Gaps = 17/202 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
                        ED        +      + S  +   +   +     V +      I 
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL-TFVPNPKAGITIK 150

Query: 513 HQAALMDEGEIKCTATNRAGHSITKA-----RLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           +         ++C A        +       R  ++A P + +P+      L + G+   
Sbjct: 151 NVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPET---SHLLKKGDTFT 207

Query: 568 LKVSMAGMPPP-TARWLHNGEPLTSGGRYEIT-------HTDRYLNLRISDARRADRGEY 619
           +  ++  +     + WL          + +         + +R   L IS AR  D G +
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267

Query: 620 QAHGVNSLGEDVASFLVTVTDR 641
             +  N+ G    +  + V ++
Sbjct: 268 MCYANNTFGSANVTTTLKVVEK 289

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 68.2 bits (166), Expect = 2e-12
 Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 31/232 (13%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
           S+P     + SP   PS   A  +      + +  T          V W    +      
Sbjct: 1   SQPSASPGEPSP---PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---- 49

Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDG 557
               + +N  +  I  +A     G   C+ +N    SI    + +  P  + L       
Sbjct: 50  ---EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFLVGL---P 100

Query: 558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRA-D 615
           L  +      ++  +          +  +G+ L +   +     +    + I + +RA  
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF---VPNPKAGITIKNVKRAYH 157

Query: 616 RGEYQAHGVNSLGEDV-ASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
           R   +              F + V +           +   ++  G + T+ 
Sbjct: 158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASP 739
             P   P   ++   S +       + W          + GY   +R + S   + +A+ 
Sbjct: 113 LDPMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATI 168

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
                    ++ LE    Y+F++ + +    SE   L +  T 
Sbjct: 169 EGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM- 402
             PP  P +      L  +   +RW  P  + G P++ + V++R  G    W   + ++ 
Sbjct: 2   TYPPTPPNVT----RLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 56

Query: 403 ----------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPA 450
                      +     V+ L+P   Y+FRI A      ++    S    +       P 
Sbjct: 57  YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116

Query: 451 AAPSFIRA 458
             P  +  
Sbjct: 117 PVPELLEI 124

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 94.9 bits (236), Expect = 4e-22
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM- 741
             PP  P +      L  +   +RW  P  + G P++ + V++R  G    W   + ++ 
Sbjct: 2   TYPPTPPNVT----RLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 56

Query: 742 ----------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPA 789
                      +     V+ L+P   Y+FRI A      ++    S    +       P 
Sbjct: 57  YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116

Query: 790 AAPSFIRA 797
             P  +  
Sbjct: 117 PVPELLEI 124

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 94.5 bits (235), Expect = 5e-22
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM 402
           P   P   ++   S +       + W          + GY   +R + S   + +A+   
Sbjct: 115 PMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG 170

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
                  ++ LE    Y+F++ + +    SE   L +  T 
Sbjct: 171 AHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 91.7 bits (228), Expect = 4e-22
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P +        +L      + W+ P  +   P+ GY VE++        R +    
Sbjct: 17  VPDTPTRLVF----SALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNP 70

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             T ++V  L P   Y FR+ A++  G+       E +      S  + PS
Sbjct: 71  AQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE---REGVITI--ESQVSGPS 116

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 91.7 bits (228), Expect = 4e-22
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P +        +L      + W+ P  +   P+ GY VE++        R +    
Sbjct: 17  VPDTPTRLVF----SALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNP 70

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             T ++V  L P   Y FR+ A++  G+       E +      S  + PS
Sbjct: 71  AQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE---REGVITI--ESQVSGPS 116

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 93.9 bits (233), Expect = 4e-22
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 23/187 (12%)

Query: 462 TTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
           T      K+  T  +    T      W K G  +                      +   
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQ 60

Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
            GE  C        +   A ++L  PP ++  K  E       GE   L      +PP T
Sbjct: 61  WGEYSCVFLPEPMGT---ANIQLHGPPRVKAVKSSEHINE---GETAMLVCKSESVPPVT 114

Query: 580 A-RWLHNGEPL------TSGGRYEITHTDRYLNLRISDARRA-DRGEYQAHGVNSLGEDV 631
              W    +         S  R+ ++ +     L I +     D G+Y+ +G +S G D 
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174

Query: 632 ASFLVTV 638
           A   + V
Sbjct: 175 AIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 64.3 bits (156), Expect = 9e-12
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 8/99 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIF------SSRRQRIVT 503
             P            E E      + E +P     +WYK            S  R  + +
Sbjct: 82  GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141

Query: 504 DNDISTLIIHQAAL-MDEGEIKCTATNRAGHSITKARLR 541
               S L I    +  D G+ +C  T+  G       LR
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 93.9 bits (233), Expect = 7e-22
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 29/198 (14%)

Query: 463 TALEDEKVEFT---VQVEGIPTPKVSWYKDG------------FEIFS-----SRRQRIV 502
           TA   E+V  T    +V   P  +VSW+K G             ++            I 
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM 562
              +   L++  A +  +G   C           +  L +  P T+ +  +      F  
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ---FPD 118

Query: 563 GEIIKLKVSMAGMPPPTARWLHNG----EPLTSGGRYEITHTDRYLNLRI-SDARRADRG 617
             ++ +  ++   P P  +WL        P  + G       D  L++ +     +    
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK-EKDGSLSVAVDLSLPKPWHL 177

Query: 618 EYQAHGVNSLGEDVASFL 635
                G N   E    ++
Sbjct: 178 PVTCVGKNDKEEAHGVYV 195

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 65.4 bits (159), Expect = 4e-12
 Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 4/86 (4%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK----DGFEIFSSRRQRIVTDND 506
              +       +   +   +  T  V   P P V W      +     ++       D  
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS 162

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAG 532
           +S  +           + C   N   
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 18/106 (16%)

Query: 573 AGMPPPTARWLHNGEPLTS-----------------GGRYEITHTDRYLNLRISDARRAD 615
           +  P     W   G                       G ++I  +     L ++ A  + 
Sbjct: 19  SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78

Query: 616 RGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK-VVMTLGKSVTL 660
            G Y         E      ++V         ++         +T+
Sbjct: 79  DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 89.8 bits (223), Expect = 1e-21
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
             +  P  ++   + T   D       +  G P P +SW K+GF       +  + +   
Sbjct: 4   GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-- 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
            TL I    + D G   C AT+ +G +   A L 
Sbjct: 62  GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
            PP I             +     LK    G P P   WL  G        R  I     
Sbjct: 7   GPPIILQGPAN---QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG- 62

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
              L+I + R +D G Y     +S GE   S ++ VT+
Sbjct: 63  --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 448 SPAAAPSFI---RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD 504
           S ++ P  I   +     T    E+V  T ++        +WYKDG ++  S    +  D
Sbjct: 3   SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMD 61

Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
                LI+ +A + D GE +C     +        + ++ P 
Sbjct: 62  GRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTVQDPS 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.5 bits (173), Expect = 7e-15
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
             P  I  P+           E + L   ++      A W  +G+ +       +    R
Sbjct: 6   SGPVHILSPQDKVSLTFTT-SERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGR 63

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
              L + +A+  D GE++           A F VTV D   P 
Sbjct: 64  KHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQDPSGPS 102

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 96.9 bits (240), Expect = 4e-21
 Identities = 43/327 (13%), Positives = 74/327 (22%), Gaps = 55/327 (16%)

Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPP------------------EYD 375
           G +  C  +    P G       S       F +   PP                    D
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435
           G  PV    V             +      +      +        R+T   ++G ++  
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG-NQSQ 272

Query: 436 PLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS 495
              + +T+         P+    L      E  +V    +        ++          
Sbjct: 273 ETLQTVTIYS------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR 326

Query: 496 SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEAPPTIRLP 551
           ++     T  D            +     C+AT      +        LR+   P +   
Sbjct: 327 AQLLLKATPED------------NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER 374

Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
               +    E            G P P  + L +G      G                  
Sbjct: 375 DCPGNWTWPE-NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTV 420

Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
            R   G Y     ++ GE      V V
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 81.5 bits (200), Expect = 3e-16
 Identities = 46/295 (15%), Positives = 77/295 (26%), Gaps = 43/295 (14%)

Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEIF 494
           +    +T   +P        A   +     + +    QVEG        V   +   E+ 
Sbjct: 75  TAKTFLTVYWTP---ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL- 130

Query: 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR----- 549
             +R+  V +    T  +            C           +      AP  ++     
Sbjct: 131 --KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188

Query: 550 -LPKQYEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSGGRYEITHTDRYLN 605
             P Q     + E+     +  S+ G+ P            + L     Y     D +  
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY---GNDSFSA 245

Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG---KAKVVMTLGKSVTLSW 662
                    D G  +      LG      L TVT    P       K  ++ G  VT+  
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVK- 304

Query: 663 SEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS 717
                   C+           P        +P  P   R    ++   PE +G S
Sbjct: 305 --------CEAH---------PRAKVTLNGVPAQPLGPRAQLLLK-ATPEDNGRS 341

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.0 bits (165), Expect = 7e-12
 Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 23/155 (14%)

Query: 394 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN-VVGFSEPGPLSEPLTVTYQRSPAAA 452
             V A P      +L++          F  +A   V G       +  L V Y       
Sbjct: 316 NGVPAQPL-GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY------G 368

Query: 453 PSFIRALH--DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           P         + T  E+ +     Q  G P P++   KDG           VT +     
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD----- 423

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
                    EG   C A +  G    +  + + +P
Sbjct: 424 --------LEGTYLCRARSTQGEVTREVTVNVLSP 450

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 24/216 (11%), Positives = 53/216 (24%), Gaps = 25/216 (11%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
                    V  T          +          +   ++ +     +  +   + + ++
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIE-------TPLPKKELLLPGNNRKVYELSNVQED 60

Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-- 578
            +  C +    G S  K  L +   P     +         +G+ + L+  + G  P   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 579 -TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ--------AHGVNSLGE 629
            T   L   + L    R         +   +   R      +           G+     
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175

Query: 630 DVASFLVTVTDRPLPPGKAKVVMTL--GKSVTLSWS 663
             A + +     P  P +      L      T+  S
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS 211

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 94.9 bits (236), Expect = 8e-21
 Identities = 62/477 (12%), Positives = 101/477 (21%), Gaps = 135/477 (28%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PP    L  +  +    V T+ WE         + GY +    T           + 
Sbjct: 2   PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 55

Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHD 461
            D +      L PG  Y   +              S P++ T               + D
Sbjct: 56  ADQSSCTFDNLSPGLEYNVSVYTVK------DDKESVPISDTIIPEVPQLTDLSFVDITD 109

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYK------DGFEIF------SSRRQRIVTDNDIST 509
           ++                    + W         G+ I                D+ +  
Sbjct: 110 SSIG------------------LRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151

Query: 510 LIIHQAALMDEG---EIKCTATNRAGHS---ITKARLRLEAPPTIRLPKQYEDGLLF--- 560
             +     ++ G   +I        G S       +  +  P  +R      D +     
Sbjct: 152 YTVTG---LEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA 208

Query: 561 --EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG- 617
                ++    V     P      +       S     +T      NL          G 
Sbjct: 209 PPPSIDLTNFLVRY--SPVKNEEDVAELSISPSDNAVVLT------NLL--------PGT 252

Query: 618 EYQAH--GVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGN 675
           EY      V    E         T     P           S T+ W  P          
Sbjct: 253 EYVVSVSSVYEQHESTPLRGRQKTG-LDSPTGIDFSDITANSFTVHWIAPR--------- 302

Query: 676 YIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 735
                                                    + + GY + H         
Sbjct: 303 -----------------------------------------ATITGYRIRHHPEHFSGRP 321

Query: 736 RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
           R          + ++ L PG  Y   I A N    S          +  Q + +A  
Sbjct: 322 REDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-------LIGQQSTVSAHH 371

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 76.4 bits (188), Expect = 9e-15
 Identities = 30/226 (13%), Positives = 52/226 (23%), Gaps = 70/226 (30%)

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
           V    E V      + + P        V     S+ L W+         I  Y +     
Sbjct: 79  VKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLNSS---TIIGYRITVVAA 134

Query: 681 ------------------------------FR-------------------PPGPPGKPQ 691
                                                                 PP   +
Sbjct: 135 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLR 194

Query: 692 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
                P    D   + W PP       +  +LV +    +   V        D  ++++ 
Sbjct: 195 FTNIGP----DTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 247

Query: 752 LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
           L PG  Y   +++      S P           Q++   +P+ I  
Sbjct: 248 LLPGTEYVVSVSSVYEQHESTP-------LRGRQKTGLDSPTGIDF 286

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 15/127 (11%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
           ++   +  T L    K     P        + +     FT+ W  P     + + GY + 
Sbjct: 260 SVYEQHESTPLRGRQKTGLDSPTGIDFSDITAN----SFTVHWIAPR----ATITGYRIR 311

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
           H         R          + ++ L PG  Y   I A N    S          +  Q
Sbjct: 312 HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-------LIGQQ 364

Query: 447 RSPAAAP 453
            + +A  
Sbjct: 365 STVSAHH 371

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 70.2 bits (172), Expect = 9e-13
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 14/132 (10%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
            +             +    PP   +     P    D   + W PP       +  +LV 
Sbjct: 169 TLINGGESAPTTLTQQTAVPPPTDLRFTNIGP----DTMRVTWAPPP---SIDLTNFLVR 221

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
           +    +   V        D  ++++ L PG  Y   +++      S P           Q
Sbjct: 222 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-------LRGRQ 274

Query: 447 RSPAAAPSFIRA 458
           ++   +P+ I  
Sbjct: 275 KTGLDSPTGIDF 286

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 29/195 (14%), Positives = 48/195 (24%), Gaps = 62/195 (31%)

Query: 657 SVTLSWSEPEDDGGCKIGNYIVEY----------------------------------FR 682
            +T+SW          I  Y +                                      
Sbjct: 19  VLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVS 75

Query: 683 -------PPGPPGKPQLLPDSPS--------LDRDVFTIRWEPPEYDGGSPVLGYLVEHR 727
                      P    ++P+ P         +      +RW P      S ++GY +   
Sbjct: 76  VYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVV 132

Query: 728 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 787
             G    +             V+GLEPG  Y   +      G S P       T   Q++
Sbjct: 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-------TTLTQQT 185

Query: 788 PAAAPSFIRALHDTT 802
               P+ +R  +   
Sbjct: 186 AVPPPTDLRFTNIGP 200

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 14/137 (10%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
            +        +   I            +  + S       +RW P      S ++GY + 
Sbjct: 78  TVKDDKESVPISDTIIPEVPQLTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRIT 130

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
               G    +             V+GLEPG  Y   +      G S P       T   Q
Sbjct: 131 VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-------TTLTQ 183

Query: 447 RSPAAAPSFIRALHDTT 463
           ++    P+ +R  +   
Sbjct: 184 QTAVPPPTDLRFTNIGP 200

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 13/113 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PP    L  +  +    V T+ WE         + GY +    T           + 
Sbjct: 2   PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 55

Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
            D +      L PG  Y   +              S P++ T           
Sbjct: 56  ADQSSCTFDNLSPGLEYNVSVYTVK------DDKESVPISDTIIPEVPQLTDL 102

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 93.0 bits (230), Expect = 2e-20
 Identities = 28/232 (12%), Positives = 55/232 (23%), Gaps = 28/232 (12%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP 482
           T     G               +      PS I   ++    +   ++    +       
Sbjct: 108 TVTTKNGDCV--------QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN 159

Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
            ++WYK+  E+     +          LIIH   L D G   C              +  
Sbjct: 160 NITWYKNNQELIIDGTKYS---QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216

Query: 543 EAPPTIRLPKQYEDGLLF------EMGEIIKLKVSMAGMP----PPTARWLHNGEPLTSG 592
               T+   + +   L+        +GE   +  +              W +    +   
Sbjct: 217 CKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276

Query: 593 GRYEITHTDRYLN-----LRISDARRADRGE-YQAHGVNSLGEDVASFLVTV 638
                +            L   +      G  Y   G N   +   +  V +
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 90.7 bits (224), Expect = 1e-19
 Identities = 43/275 (15%), Positives = 71/275 (25%), Gaps = 34/275 (12%)

Query: 457 RALHDTTALEDEKVEFTVQVEG---------IPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
               +  A   E                        V+W K G       R+  V +   
Sbjct: 34  GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG-- 89

Query: 508 STLIIHQAALMDEGEI-KCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
             L I      D      CT T + G  +    R  +  PP+  +P+ YE G   + G  
Sbjct: 90  -DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSC-IPETYELGTHDKYGID 147

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           +   +           W  N + L   G           NL I +    D G Y  +   
Sbjct: 148 LYCGIL-YAKHYNNITWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHY 203

Query: 626 SLGEDVASFLVTVTDRP--LPPGKA--------KVVMTLGKSVTLS---WSEPEDDGGCK 672
                    +V+       +P            K+ +T+G+   ++    S         
Sbjct: 204 DDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVL 263

Query: 673 IGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR 707
           I       +      G   +L  S  +        
Sbjct: 264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 11/130 (8%), Positives = 18/130 (13%), Gaps = 10/130 (7%)

Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
                    +   +     +            +           E    T          
Sbjct: 200 YVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLV 259

Query: 484 ----VSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEI-KCTATNRAGH 533
               + W      I                   +TL          G    C   N    
Sbjct: 260 DDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319

Query: 534 SITKARLRLE 543
                 + LE
Sbjct: 320 KTLTTTVVLE 329

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P PP  P       ++  +   + W+PP  DGGS V  Y +E R      W   +    
Sbjct: 9   EPEPPRFPI----IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA--KS 62

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
             T   + GL  G +Y+FRI AEN  G S+P   + P+ +            +       
Sbjct: 63  RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIV 122

Query: 803 ALEDEKPRNTNNCDYESKRTFQ 824
             +     N +N  ++  + + 
Sbjct: 123 RGKGTVSSNYDNYVFDIWKQYY 144

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 94.5 bits (235), Expect = 5e-20
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
                P PP  P       ++  +   + W+PP  DGGS V  Y +E R      W   +
Sbjct: 5   ADVPEPEPPRFPI----IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL 459
                 T   + GL  G +Y+FRI AEN  G S+P   + P+ +                
Sbjct: 61  --KSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK---------- 108

Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
                  DE+ +       + +   ++  D ++ +  +   I  D+
Sbjct: 109 RRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDH 154

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 24/97 (24%), Positives = 37/97 (38%)

Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT 503
            +     A P FI   + T   E +   F  +V     P V+W+KD  E+  S +     
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY 533

Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
           + +   L I++    D+GE    A N  G       L
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 65.2 bits (159), Expect = 7e-11
 Identities = 17/79 (21%), Positives = 26/79 (32%)

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
             G+       +    PP   W  +   L    +Y   +      L I+  +  D+GEY 
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554

Query: 621 AHGVNSLGEDVASFLVTVT 639
               NS G       + VT
Sbjct: 555 VRAKNSYGTKEEIVFLNVT 573

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 86.0 bits (213), Expect = 2e-20
 Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 450 AAAPSFIRALH----DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTD 504
             AP +                  V+F     G P P + W K+G E     R       
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
           N   +LI+      D+G   C   N  G       L 
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-TD 601
            AP      K  +          +K +    G P PT RWL NG+      R       +
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           ++ +L +     +D+G Y     N  G    ++ + V
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
                A  +  A        + +V      +V+WYKDG ++ SS + R+        L++
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            QA   + GE  C     AG      RL++  
Sbjct: 71  QQAGQAEAGEYSC----EAGGQQLSFRLQVAG 98

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
                    +     +  E G    L   +A        W  +G+ L+S  +  +     
Sbjct: 6   SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL 643
              L +  A +A+ GEY        G    SF + V  +  
Sbjct: 65  TRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVAGQCF 101

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 95.6 bits (238), Expect = 4e-20
 Identities = 66/311 (21%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 29   RRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQ 88
             R ++    +R+  I IQK  RG+L     R++Y+ M+ +A+ IQ + R      QAR  
Sbjct: 762  IRADK----LRAACIRIQKTIRGWL----MRKKYMRMRRAAITIQRYVR----GHQARCY 809

Query: 89   YLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANL 148
                          FL+   A I IQ   +  ++ KR    Y  ++ A +++Q   R  L
Sbjct: 810  A------------TFLRRTRAAIIIQKFQRMYVVRKR----YQCMRDATIALQALLRGYL 853

Query: 149  TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208
               K +   +L + K+ +IQ+  R      L   + H    A + +Q  YR  +A R  +
Sbjct: 854  VRNKYQ--MMLREHKSIIIQKHVR----GWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907

Query: 209  ERYVALRT--ATITIQTRFRAYLIAKNQR-----DEYAELKQARRFRFKLNLRKYERVIE 261
            +  +  R+      +       ++   ++      EY  L +       L +       +
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN---NLEITYSTETEK 964

Query: 262  LLKLKREQERQEKYRHQCAVKIQSL-WKMYRVRKKFADIIEQKKQAKKTADNQFENQAPL 320
            L          E+       ++ SL  ++ ++RK+      +KK  ++ AD        L
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 321  YVRLEEAITGL 331
               L+E  T L
Sbjct: 1025 VSELKEQNTLL 1035

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 82.8 bits (205), Expect = 4e-16
 Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 48   YFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLK 107
            +FR   +   E+     ++++ ++IQ+  R                      R+++++++
Sbjct: 750  FFRAGQVAYLEKIRADKLRAACIRIQKTIR------------------GWLMRKKYMRMR 791

Query: 108  HATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVI 167
             A I IQ   +      R  A +    +A + +Q+  R    M   R  +  M+     +
Sbjct: 792  RAAITIQRYVRGHQA--RCYATFLRRTRAAIIIQKFQR----MYVVRKRYQCMRDATIAL 845

Query: 168  QQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRA 227
            Q   R   L+R +   +     + I IQ+  R  +A    R  Y     A + +Q  +R 
Sbjct: 846  QALLRG-YLVRNKYQMMLREHKSII-IQKHVRGWLA----RVHYHRTLKAIVYLQCCYRR 899

Query: 228  YLIAKNQRDEYAELKQARRFRFKLNLRKYE---RVIEL-LKLKREQERQEKYRHQCAVKI 283
             +     + E  +LK   R   +          ++++L  K+  + +  +    +     
Sbjct: 900  MM----AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955

Query: 284  QSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLN 332
             +        +   + +   ++  K A N+  +      +L + +    
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 36/286 (12%)

Query: 1    MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
              +C + +L      I+IQ   R  +  +R +     +R  TI +Q   RGYL+  K + 
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQC----MRDATIALQALLRGYLVRNKYQM 860

Query: 61   EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQ--------REEFLKLKHATIA 112
                 K  ++ IQ+  R         +    LK     Q        + E  KLK    +
Sbjct: 861  MLREHK--SIIIQKHVRGWLARVHYHRT---LKAIVYLQCCYRRMMAKRELKKLKIEARS 915

Query: 113  IQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWY- 171
            ++   K              L+   + +Q++        K      L+++  ++   +  
Sbjct: 916  VERYKKLH----------IGLENKIMQLQRKIDEQNKEYKS-----LLEKMNNLEITYST 960

Query: 172  RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYL-- 229
               KL           + A     R       +   R+     +T   TI+     Y   
Sbjct: 961  ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 230  IAKNQRDEYAELKQARRFRFKLNLRKYERVIELLK-LKREQERQEK 274
              +   +   +    +  + +LN R +++  E+ + ++++   + K
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDN 505
           +     +  L D      ++VE  V+V      +V W K+G E+        R R   D 
Sbjct: 6   SGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDG 64

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
               LI       D G  +            +A L +E  
Sbjct: 65  KRHILIFSDVVQEDRGRYQVITNGGQ----CEAELIVEEK 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG----GRYEIT 598
             P  I      ED  +F  G+ +++ V ++        W+ NG  LT       RY   
Sbjct: 6   SGPVLIV--TPLEDQQVFV-GDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFK 61

Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
              +   L  SD  + DRG YQ               + V ++
Sbjct: 62  KDGKRHILIFSDVVQEDRGRYQV----ITNGGQCEAELIVEEK 100

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 84.3 bits (209), Expect = 8e-20
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
               +F +              F  + E     KV W + G +I +S +  + T+    T
Sbjct: 6   KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARL 540
           L + +    D+G         AG S  K  L
Sbjct: 65  LTVREVGPADQGSYAV----IAGSSKVKFDL 91

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G     +           RW   G  +++  +Y +        L + +   AD+G Y   
Sbjct: 23  GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAV- 80

Query: 623 GVNSLGEDVASFLVTVT 639
                G     F + V 
Sbjct: 81  ---IAGSSKVKFDLKVI 94

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 91.4 bits (226), Expect = 9e-20
 Identities = 28/217 (12%), Positives = 53/217 (24%), Gaps = 40/217 (18%)

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-----------------DN 505
              + + VE T       + +  W           +   +T                 D 
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
               LII    + D     C   ++    +      L A     L            G+ 
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHL----------LQGQS 113

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           + L +       P+ +          GG+           L +S     D G +    + 
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 163

Query: 626 SLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSW 662
           +  +      + V         + V    G+ V  S+
Sbjct: 164 NQKKVEFKIDIVVLAFQKAS--SIVYKKEGEQVEFSF 198

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 77.5 bits (190), Expect = 4e-15
 Identities = 32/244 (13%), Positives = 60/244 (24%), Gaps = 31/244 (12%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
           DT  L+ + +  T++     +P V       +     +          TL + Q  L D 
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDS 154

Query: 521 GEIKCTATNRAGHSITKARLRLEA---PPTIRLPKQYEDGLL--------FEMGEIIKLK 569
           G   CT          K  + + A     +I   K+ E             ++    +L 
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214

Query: 570 VSMAGMPPP----TARWLHNGEPLTSGGRYEITHTDRYLNLRIS----DARRADRGEYQA 621
                        T    +    +    +       + L L ++      + A  G    
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGK--AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
                 G+      + V            +V       + LS      +         V 
Sbjct: 275 ALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVW 334

Query: 680 YFRP 683
              P
Sbjct: 335 VLNP 338

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 27/272 (9%), Positives = 58/272 (21%), Gaps = 54/272 (19%)

Query: 390 TGSP----YWVRASPHMVEDTE-LMVSGLEP---GWRYQFRITAENVVGFSE------PG 435
                            ++  + L VS LE    G  +    T        E        
Sbjct: 121 PPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG-TWTC--TVLQNQKKVEFKIDIVVL 177

Query: 436 PLSEPLTVTYQRSPAAAP-SFIRALHDTTALEDEKVEFTVQVEGIPTPKV--SWYKDGFE 492
              +  ++ Y++       SF  A          ++ +  +        +          
Sbjct: 178 AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS 237

Query: 493 IFSSRRQRI--VTDNDISTLIIHQAALM--DEGEIKCTATNRAGHSITKARLRLEAPPTI 548
           +    +     +       L + QA       G +      + G    +  L +      
Sbjct: 238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-- 295

Query: 549 RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA--RWLHNGEPLTSGGRYEITHTDRYLNL 606
                              L   + G   P          +      R            
Sbjct: 296 --------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-----------E 330

Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           +       + G +Q    +S G+ +    + V
Sbjct: 331 KAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 38/212 (17%)

Query: 463 TALEDEKVEFTVQVEGIPTPK----VSWYKDGFEIFSSRRQRIVTDNDI----------- 507
              + E      +    P  +    + W     +     +  I+   D            
Sbjct: 11  EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70

Query: 508 -------------STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
                        +++ +    L D G  +C      G +  K  L +   P+    + +
Sbjct: 71  RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG--TRCF 128

Query: 555 EDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR 613
            DG   E+G   KLK     G  P    W    +  T    +    T     + + +A  
Sbjct: 129 VDGSE-EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASS 185

Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
              G Y     N +G D     + V     PP
Sbjct: 186 EYSGTYSCTVQNRVGSDQCMLRLDVV----PP 213

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 76.6 bits (188), Expect = 9e-16
 Identities = 40/225 (17%), Positives = 61/225 (27%), Gaps = 34/225 (15%)

Query: 341 IKKPPGP----PGKPQLLP---DSPSLDRDVFTIRW--EPPEYDGGSPVLGYLVEHRRTG 391
           I  P        G+   LP        D+    I W   P +      V+      +   
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62

Query: 392 S---PYWVRAS----PHMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPL 441
           +       R           D  + V+ L+    G  YQ +   +   G +    L   L
Sbjct: 63  NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGT-YQCK--VKKAPGVANKKFL---L 116

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQR 500
           TV         PS  R   D +       +   +  EG    +  W K            
Sbjct: 117 TV------LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL 170

Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
               +    + +  A+    G   CT  NR G      RL +  P
Sbjct: 171 AEMTS--PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 93.8 bits (232), Expect = 2e-19
 Identities = 67/493 (13%), Positives = 115/493 (23%), Gaps = 92/493 (18%)

Query: 328 ITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEH 387
             G     D+               L         D   +RWEP        +LG+++ +
Sbjct: 448 TKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFY 507

Query: 388 RRT--------------GSPYWVRA---------SPHMVEDTELMVSGLEPGWRYQFRIT 424
           +                GS  W             P        ++ GL+P  +Y   + 
Sbjct: 508 KEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVK 567

Query: 425 AENVVGFSEP--GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFT----VQVEG 478
                       G  S+ + V   ++ A  PS       + +    ++           G
Sbjct: 568 TLVTFSDERRTYGAKSDIIYV---QTDATNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG 623

Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
             T  + +++   E                           E   K   +     +    
Sbjct: 624 NITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683

Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
                    ++  ++      FE      + V        +   + N         +E  
Sbjct: 684 SCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV 743

Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDV---ASFLVTVTDRPL-----PPGKAKV 650
                L   IS  R       +    N    +     +  V+    P        G    
Sbjct: 744 VNKESLV--ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801

Query: 651 VMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEP 710
            +     V L W EP++  G  I  Y V Y R               +L+R         
Sbjct: 802 EIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGC------- 853

Query: 711 PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 770
                                                 + GL PG  Y  RI A ++ G 
Sbjct: 854 -------------------------------------RLRGLSPG-NYSVRIRATSLAG- 874

Query: 771 SEPGPLSEPLTVT 783
              G  +EP    
Sbjct: 875 --NGSWTEPTYFY 885

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 66.1 bits (160), Expect = 5e-11
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 32/217 (14%)

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMT--LGKSVTLSW 662
            LR+      + G Y  + +++       +  +  +  +  GK        L  S     
Sbjct: 384 KLRLIRGETLEIGNYSFYALDNQN-LRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKM 442

Query: 663 SE-PEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
            E     G  +  +  ++            L         D   +RWEP        +LG
Sbjct: 443 EEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLG 502

Query: 722 YLVEHRRT--------------GSPYWVRA---------SPHMVEDTELMVSGLEPGWRY 758
           +++ ++                GS  W             P        ++ GL+P  +Y
Sbjct: 503 FMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQY 562

Query: 759 QFRITAENVVGFSEP--GPLSEPLTVTYQRSPAAAPS 793
              +             G  S+ + V   ++ A  PS
Sbjct: 563 AIFVKTLVTFSDERRTYGAKSDIIYV---QTDATNPS 596

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 56.5 bits (135), Expect = 5e-08
 Identities = 33/224 (14%), Positives = 52/224 (23%), Gaps = 57/224 (25%)

Query: 623 GVNSLGEDVASFLVTVT---DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
                     S ++ V      P  P     V      + L W  P D  G  I +Y+V 
Sbjct: 573 SDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVF 631

Query: 680 YFR-------------------------------------PPGPPGKPQLLPDSPSLDRD 702
           + R                                                   P  D  
Sbjct: 632 WERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQ 691

Query: 703 V--------FTIRWEPPEYDG-----GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
           +        F   +E   ++       S     L +    G+    R    +V    L++
Sbjct: 692 ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVI 751

Query: 750 SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           SGL     Y+  + A N      P            R+   A +
Sbjct: 752 SGLRHFTGYRIELQACNQDT---PEERCSVAAYVSARTMPEAKA 792

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 321 YVRLEEAITGLNVGTDLYCVIKKP-PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--- 376
           +    E+          Y          P     +     L+   F   +E   ++    
Sbjct: 658 WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL--KELEESSFRKTFEDYLHNVVFV 715

Query: 377 --GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
              S     L +    G+    R    +V    L++SGL     Y+  + A N      P
Sbjct: 716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT---P 772

Query: 435 GPLSEPLTVTYQRSPAAAPS 454
                       R+   A +
Sbjct: 773 EERCSVAAYVSARTMPEAKA 792

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 34/199 (17%), Positives = 61/199 (30%), Gaps = 21/199 (10%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS------------ 508
                ED  V   V    +     +WYK           R V +++++            
Sbjct: 8   PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67

Query: 509 ----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGE 564
               +L+     + D G      T+                P  +   Q  +  + E  +
Sbjct: 68  YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE-LD 126

Query: 565 IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
            + L   ++       +WL N + L    R  ++  +    LRI   +R D GEYQ    
Sbjct: 127 SVTL-TCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEIS 183

Query: 625 NSLGE-DVASFLVTVTDRP 642
           N +      S  + +   P
Sbjct: 184 NPVSVRRSNSIKLDIIFDP 202

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 84.7 bits (209), Expect = 2e-19
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 13/105 (12%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ---------- 499
           +    F++A           VE   +  G P P++ W+ +G        Q          
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 500 ---RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
                   +  ST+ I      D G  +C A+N    +      R
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 527 ATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN 585
           +++   H  +    R       ++ P   +      +G  ++L     G P P  +W   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMAGFVQAPLSQQ----RWVGGSVELHCEAVGSPVPEIQWWFE 58

Query: 586 GE-------PLTSGGRYEITHTD-RYLN-----LRISDARRADRGEYQAHGVNSLGEDVA 632
           G+        L  G R +  H    Y       + I      D G Y+    N    +  
Sbjct: 59  GQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118

Query: 633 SFLVTVT 639
           +    V 
Sbjct: 119 TRAPRVK 125

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 89.5 bits (221), Expect = 2e-19
 Identities = 48/366 (13%), Positives = 98/366 (26%), Gaps = 47/366 (12%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFT-VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
           +P   P+   A    T+L  + V  T   VE      V W        S   +       
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG-- 59

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
              L++    L D G   C    R   ++    L ++ PP       +    L  +  + 
Sbjct: 60  -RRLLLRSVQLHDSGNYSCYRAGRPAGTVH---LLVDVPPEEPQLSCFRKSPLSNV--VC 113

Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           +            A  L      +    ++        + + S       G+   +    
Sbjct: 114 EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY---- 169

Query: 627 LGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP 686
                    + V               +G       S+ +         +       P P
Sbjct: 170 ------IVSMCVASS------------VGSKF----SKTQ--------TFQGCGILQPDP 199

Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           P    +   + +      ++ W+ P  ++     L + + +R   S  +       ++  
Sbjct: 200 PANITVTAVARNPRW--LSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ-H 256

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 805
             ++     G R+  ++ A+   G  E    S     T      + P+         AL 
Sbjct: 257 HCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALT 316

Query: 806 DEKPRN 811
             K  +
Sbjct: 317 TNKDDD 322

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
            P PP    +   + +      ++ W+ P  ++     L + + +R   S  +       
Sbjct: 196 QPDPPANITVTAVARNPRW--LSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKD 253

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
           ++    ++     G R+  ++ A+   G  E    S     T      + P+        
Sbjct: 254 LQ-HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPM 312

Query: 463 TA 464
            A
Sbjct: 313 QA 314

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 29/267 (10%), Positives = 58/267 (21%), Gaps = 52/267 (19%)

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
           L     P   + +     L    G+ + L    +      T  W+       S       
Sbjct: 1   LAPRRCPAQEVARGVLTSLP---GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG 57

Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSV 658
              R   L +   +  D G Y  +     G    +  + V   P  P  +    +   +V
Sbjct: 58  MGRR---LLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111

Query: 659 TLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 718
              W  P           ++   +    P +    P                        
Sbjct: 112 VCEW-GPRSTPSL-TTKAVLLVRKFQNSPAEDFQEP------------------------ 145

Query: 719 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
                 ++ +    +  +           +         Y   +   + VG       + 
Sbjct: 146 -----CQYSQESQKFSCQ-----------LAVPEGDSSFYIVSMCVASSVGSKFSKTQTF 189

Query: 779 PLTVTYQRSPAAAPSFIRALHDTTALE 805
                 Q  P A  +      +   L 
Sbjct: 190 QGCGILQPDPPANITVTAVARNPRWLS 216

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 451 AAPSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDIS 508
            + +F + L       +  K+  TV++      +V W K+G EI  S  +    +     
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
           TL I Q +L D+   +C              L
Sbjct: 73  TLTISQCSLADDAAYQCVVGGEK----CSTEL 100

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 533 HSITKARLRLEAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
           H    + +  +       +L   Y+   + + G  I+L V +A       +WL NG+ + 
Sbjct: 3   HHHHHSSMDEKKSTAFQKKLEPAYQ---VSK-GHKIRLTVELAD-HDAEVKWLKNGQEIQ 57

Query: 591 -SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
            SG +Y          L IS    AD   YQ      +G +  S  + V +
Sbjct: 58  MSGSKYIFESIGAKRTLTISQCSLADDAAYQC----VVGGEKCSTELFVKE 104

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGP    Q +  SP+       I WEPP Y  G PV GY +      +          V
Sbjct: 7   GPGPVENLQAVSTSPT----SILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEV 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 449
           +     + GL+    Y  R  A N  G   PG  ++ +TV T   S 
Sbjct: 59  DGLSYKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVVTLSDSG 102

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGP    Q +  SP+       I WEPP Y  G PV GY +      +          V
Sbjct: 7   GPGPVENLQAVSTSPT----SILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEV 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 788
           +     + GL+    Y  R  A N  G   PG  ++ +TV T   S 
Sbjct: 59  DGLSYKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVVTLSDSG 102

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P   QL     +    V    W PP +  G  +  Y+VE+ R+GS  W   +    
Sbjct: 7   GPDAPRNLQLSLPREA--EGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMW---ASQRA 60

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                 +  L     Y  R+ A    G    G  S+  ++T     +   S
Sbjct: 61  ASNFTEIKNLLVNTLYTVRVAAVTSRG---IGNWSDSKSIT-TIKGSGPSS 107

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P   QL     +    V    W PP +  G  +  Y+VE+ R+GS  W   +    
Sbjct: 7   GPDAPRNLQLSLPREA--EGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMW---ASQRA 60

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                 +  L     Y  R+ A    G    G  S+  ++T     +   S
Sbjct: 61  ASNFTEIKNLLVNTLYTVRVAAVTSRG---IGNWSDSKSIT-TIKGSGPSS 107

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 90.6 bits (224), Expect = 7e-19
 Identities = 40/260 (15%), Positives = 63/260 (24%), Gaps = 60/260 (23%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR---------------------YEITHTD 601
           G  +   V   G   P      +GE L   G+                     ++   ++
Sbjct: 233 GTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASE 292

Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
                       +  G                       RP         + +G  V L 
Sbjct: 293 SPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352

Query: 662 WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
           W+ P+D GG +   Y V   +           P+S        ++R+             
Sbjct: 353 WTPPQDSGGREDIVYSVTCEQ---------CWPESGECGPCEASVRYSE----------- 392

Query: 722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
                            PH +  T + VS LEP   Y F + A N V        S    
Sbjct: 393 ----------------PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS---GLVTSRSFR 433

Query: 782 VTYQRSPAAAPSFIRALHDT 801
                     P  +R    +
Sbjct: 434 TASVSINQTEPPKVRLEGRS 453

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 86.4 bits (213), Expect = 2e-17
 Identities = 28/133 (21%), Positives = 39/133 (29%), Gaps = 18/133 (13%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS------- 392
              +PP  P     +     +      +RW PP+  GG   + Y V   +          
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKV-----ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGP 383

Query: 393 -PYWVRASPHMVE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
               VR S        T + VS LEP   Y F + A N V        S           
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS---GLVTSRSFRTASVSIN 440

Query: 450 AAAPSFIRALHDT 462
              P  +R    +
Sbjct: 441 QTEPPKVRLEGRS 453

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 75.2 bits (184), Expect = 6e-14
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 10/101 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P K +L   S +      ++ W  P       V  Y V +R+ G            
Sbjct: 440 NQTEPPKVRLEGRSTTS----LSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRR--T 492

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           E   + +  L P   Y  ++ A    G    G  S+     
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEG---QGAGSKVHEFQ 530

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 75.2 bits (184), Expect = 6e-14
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 10/101 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P K +L   S +      ++ W  P       V  Y V +R+ G            
Sbjct: 440 NQTEPPKVRLEGRSTTS----LSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRR--T 492

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           E   + +  L P   Y  ++ A    G    G  S+     
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEG---QGAGSKVHEFQ 530

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 84.3 bits (208), Expect = 9e-19
 Identities = 23/200 (11%), Positives = 45/200 (22%), Gaps = 40/200 (20%)

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI--------------- 507
              + + VE T       + +  W           +   +T                   
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 508 --STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
               LII    + D     C   ++    +      L A     L            G+ 
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHL----------LQGQS 114

Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
           + L +       P+ +          GG+           L +S     D G +    + 
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 164

Query: 626 SLGEDVASFLVTVTDRPLPP 645
           +  +      + V       
Sbjct: 165 NQKKVEFKIDIVV--LAFQK 182

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQA 515
           + A  DT  L+ + +  T++     +P V               + +      TL + Q 
Sbjct: 101 LTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR--------GKNIQGG--KTLSVSQL 150

Query: 516 ALMDEGEIKCTATNRAGHSITKARLRLEA-PPT 547
            L D G   CT          K  + + A    
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 87.1 bits (215), Expect = 1e-18
 Identities = 27/228 (11%), Positives = 54/228 (23%), Gaps = 23/228 (10%)

Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT---TALEDEKVEFTVQV 476
           ++  T  +  G          + V           F+    +       E  ++    +V
Sbjct: 65  EYFCTHNDSRGLETDERKRLYIFVPDPTVG-----FLPNDAEELFIFLTEITEITIPCRV 119

Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
              P   V+ ++            +  D+      I      ++    C  T       +
Sbjct: 120 TD-PQLVVTLHEKK----GDVALPVPYDHQRGFSGIF-----EDRSYICKTTIGDREVDS 169

Query: 537 KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG---- 592
            A        +           +   GE I L   + G       W +  +         
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229

Query: 593 -GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
                         L I  A   D G Y  +   S+ +      + +T
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 70.5 bits (172), Expect = 4e-13
 Identities = 25/197 (12%), Positives = 49/197 (24%), Gaps = 19/197 (9%)

Query: 473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
           T  +    +  V W +   E       +       S L +     +D GE  CT  +  G
Sbjct: 17  TFVLTCSGSAPVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75

Query: 533 -HSITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP 588
             +  + RL +  P            E  +       I +       P            
Sbjct: 76  LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR-VTDPQLVVTLHEKKGD 134

Query: 589 LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP--- 645
           +     Y         + +   +   +   Y         E  +        +       
Sbjct: 135 VALPVPY---------DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVS 185

Query: 646 -GKAKVVMTLGKSVTLS 661
               + V+  G+++TL 
Sbjct: 186 VNAVQTVVRQGENITLM 202

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 13/120 (10%)

Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
           LTV Y       P  +        LE         V G P P + W  +G  +  S+   
Sbjct: 3   LTVYY------PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIH 53

Query: 501 IVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED 556
           +    +       L+ ++    + G     A N  G +           P          
Sbjct: 54  VEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
            L +  PP +   ++ E  L       I+  V   G PPPT  WLHNG+PL       + 
Sbjct: 2   ALTVYYPPRVVSLEEPELRL----EHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVE 55

Query: 599 HTDRYLN----LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           +          L  +     + G Y     N LG    +        P P 
Sbjct: 56  YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 106

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGP    +    SP+      T+ WE P    G  +  Y + +   G+          V
Sbjct: 17  LPGPAPNLRAYAASPT----SITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD---V 68

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                 ++GL+    Y FR+ A N  G   PG  +  + V 
Sbjct: 69  SSHSYTINGLKKYTEYSFRVVAYNKHG---PGVSTPDVAVR 106

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGP    +    SP+      T+ WE P    G  +  Y + +   G+          V
Sbjct: 17  LPGPAPNLRAYAASPT----SITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD---V 68

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                 ++GL+    Y FR+ A N  G   PG  +  + V 
Sbjct: 69  SSHSYTINGLKKYTEYSFRVVAYNKHG---PGVSTPDVAVR 106

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 29/193 (15%)

Query: 451 AAPSFIRALH--DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDI 507
           A P  +  L       L+++ V  T Q    P    + W+ +G  I +  +         
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------- 51

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
                 +A   D GE  C     +        L +     +      E    F+ GE I 
Sbjct: 52  -PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVLFEWLVLQTPHLE----FQEGETIM 104

Query: 568 LK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
           L+  S    P     +  NG+                    I  A  +  G+Y   G   
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFSHLDP--------TFSIPQANHSHSGDYHCTGNIG 156

Query: 627 LGEDVASFLVTVT 639
                +S  VT+T
Sbjct: 157 YTL-FSSKPVTIT 168

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 18/101 (17%)

Query: 435 GPLSEP--LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGF 491
             LS+P  LTV ++         ++        E E +          P  KV+++++G 
Sbjct: 73  TSLSDPVHLTVLFE------WLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125

Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
               S            T  I QA     G+  CT      
Sbjct: 126 SQKFSHLD--------PTFSIPQANHSHSGDYHCTGNIGYT 158

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 17/126 (13%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDR 602
           APP   L  +     + +  + + L    A  P   + +W HNG  + +  +        
Sbjct: 1   APPKAVLKLEPPWINVLQ-EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ-------- 51

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL-- 660
                   A   D GEY      +   D     +TV    L      +    G+++ L  
Sbjct: 52  --PSYRFKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQEGETIMLRC 107

Query: 661 -SWSEP 665
            SW + 
Sbjct: 108 HSWKDK 113

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 64/202 (31%)

Query: 624 VNSLGE-DVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-- 680
           +        A  +VT  +   PP +A+V      ++T+SW    +     I  + V+   
Sbjct: 94  LKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTET----ITGFQVDAVP 149

Query: 681 ------------------------------FR-------------------PPGPPGKPQ 691
                                                                  P   +
Sbjct: 150 ANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLR 209

Query: 692 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
            L  +P    +   + W+PP     + + GY++++ + GSP            TE  ++G
Sbjct: 210 FLATTP----NSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG 261

Query: 752 LEPGWRYQFRITAENVVGFSEP 773
           LEPG  Y   + A      SEP
Sbjct: 262 LEPGTEYTIYVIALKNNQKSEP 283

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 29/233 (12%), Positives = 53/233 (22%), Gaps = 74/233 (31%)

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
            +         ++        P   K       S++  W+ P       +  Y V     
Sbjct: 3   HHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQ----LTGYRVRVTPK 58

Query: 681 ------------------------------FR---------------------PPGPPGK 689
                                                                   PP +
Sbjct: 59  EKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRR 118

Query: 690 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
            ++            TI W          + G+ V+         ++ +    +     +
Sbjct: 119 ARVT----DATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRT-IKPDVRSYTI 169

Query: 750 SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
           +GL+PG  Y+  +   N    S P        V    +   APS +R L  T 
Sbjct: 170 TGLQPGTDYKIYLYTLNDNARSSP-------VVIDASTAIDAPSNLRFLATTP 215

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 75.6 bits (186), Expect = 6e-15
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
            +      + +          P   + L  +P    +   + W+PP     + + GY+++
Sbjct: 184 TLNDNARSSPVVIDASTAIDAPSNLRFLATTP----NSLLVSWQPPR----ARITGYIIK 235

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
           + + GSP            TE  ++GLEPG  Y   + A      SEP
Sbjct: 236 YEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 283

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
                   P   +    +P+      + +W PP       + GY V          ++  
Sbjct: 16  FQGPAIPAPTDLKFTQVTPT----SLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEI 67

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL 459
               + + ++VSGL    +Y+  + A      S P   ++ +  T +    + P   R  
Sbjct: 68  NLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRP---AQGVVTTLE--NVSPPRRARVT 122

Query: 460 HDTT 463
             T 
Sbjct: 123 DATE 126

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP + ++            TI W          + G+ V+         ++ +    
Sbjct: 112 NVSPPRRARVT----DATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRT-IKP 162

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
           +     ++GL+PG  Y+  +   N    S P        V    +   APS +R L  T 
Sbjct: 163 DVRSYTITGLQPGTDYKIYLYTLNDNARSSP-------VVIDASTAIDAPSNLRFLATTP 215

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 79.0 bits (195), Expect = 6e-18
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
            ++ S    +        + ++   ++       ++W +DG ++  S R RI  +     
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----E 55

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPPT 547
           + +  +   D G   C  ++ +G   T   +   +A P+
Sbjct: 56  VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 78.6 bits (194), Expect = 9e-18
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           +  +  +  +     L   G++++L+  +      +  WL +G  L    R  IT     
Sbjct: 2   SSGSSGVEVES---FLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGE--- 54

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
             + + D+  AD G Y     +  G D   F V V+D   P G
Sbjct: 55  -EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL-PSG 95

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 85.3 bits (210), Expect = 1e-17
 Identities = 44/332 (13%), Positives = 81/332 (24%), Gaps = 57/332 (17%)

Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
           + C + +               +L        W   + D   P+   L E+R +     +
Sbjct: 27  IKCPLFEHFLKFNYSTAHSAGLTL-----IWYWTRQDRDLEEPINFRLPENRISKEKDVL 81

Query: 397 RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI 456
              P ++ D     +G      Y       N    S+         +   +  +   S +
Sbjct: 82  WFRPTLLND-----TG-----NYTC--MLRNTTYCSK-----VAFPLEVVQKDSCFNSPM 124

Query: 457 RALHDTTALEDEKVEFT-----VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           +       +E      T             P ++WY   ++I +          +   L 
Sbjct: 125 KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLS 180

Query: 512 IHQAALMDEGEIKCTATNRAG----------HSITKARLRLEAPPTIRLPKQYEDGLLFE 561
              A + + G   C  T                      +   PP I  P  +      E
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVV-YEKE 239

Query: 562 MGEIIKLK----VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL----------NLR 607
            GE + +      S          W  +G+           +                L 
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299

Query: 608 ISDARRADRG-EYQAHGVNSLGEDVASFLVTV 638
           I      D    Y  H  ++ GE   +  V  
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 19/124 (15%)

Query: 441 LTVTYQRSPAAAPSFIRALHDTTALE---DEKVEFTVQV----EGIPTPKVSWYKDGFEI 493
           + V       A P  I + +D    E    E++     V          +V W  DG + 
Sbjct: 213 VKVV-GSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271

Query: 494 FSSRRQRIVT----------DNDISTLIIHQAALMDEG-EIKCTATNRAGHSITKARLRL 542
                   +           +     L I +    D      C A +  G     A+++ 
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

Query: 543 EAPP 546
           + P 
Sbjct: 332 KVPA 335

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 5/88 (5%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLRISDARRADRG 617
              +K   S A     T  W    +             +  +      L        D G
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92

Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPP 645
            Y     N+      +F + V  +    
Sbjct: 93  NYTCMLRNTTYCSKVAFPLEVVQKDSCF 120

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND-----I 507
              I  L   T   D        V+G P P + W+ +G  +  S+               
Sbjct: 4   APTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
             L +     M+ G+    A N  G    +        P I
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI----- 597
              PTI   +             I   V   G P P  +W +NG  L             
Sbjct: 2   HFAPTITFLESPTSD----HHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVT 55

Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
            HT+ +  L++ +    + G+Y     N  G+D           P
Sbjct: 56  NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDV--FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
                 P   P      R      + W+PPE      + GY++E  R GS  W    P +
Sbjct: 4   GSSGLSP---PRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLE-GRQGSQGWEVLDPAV 58

Query: 403 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
              +TEL+V GL     Y+FR+ A      S+P       T     S  + PS
Sbjct: 59  AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSN-----TANVSTSGLSGPS 106

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 684 PGPPGKPQLLPDSPSLDRDV--FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
                 P   P      R      + W+PPE      + GY++E  R GS  W    P +
Sbjct: 4   GSSGLSP---PRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLE-GRQGSQGWEVLDPAV 58

Query: 742 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              +TEL+V GL     Y+FR+ A      S+P       T     S  + PS
Sbjct: 59  AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSN-----TANVSTSGLSGPS 106

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHM 402
            PGPP                  + W+PP    G  +L Y + HR   +           
Sbjct: 27  VPGPPMGILFPEVRT----TSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
               +   +GL+P   Y FRITA+   G    G  +E L VT      + PS
Sbjct: 82  PSARQYTATGLKPESVYLFRITAQTRKG---WGEAAEALVVT--TEKRSGPS 128

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHM 741
            PGPP                  + W+PP    G  +L Y + HR   +           
Sbjct: 27  VPGPPMGILFPEVRT----TSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
               +   +GL+P   Y FRITA+   G    G  +E L VT      + PS
Sbjct: 82  PSARQYTATGLKPESVYLFRITAQTRKG---WGEAAEALVVT--TEKRSGPS 128

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 81.4 bits (200), Expect = 2e-17
 Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 14/195 (7%)

Query: 463 TALEDEKVEFTVQVEGIPTPKVSWY-KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
           T  +++ V        I    VS   +   + F     RI  D+      I    +   G
Sbjct: 20  TENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAG 77

Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF-EMGEIIKL--KVSMAGMPPP 578
            + C A        +   + +     I          +   +GE + L            
Sbjct: 78  MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137

Query: 579 TARWLHNGEPLTSGG---RYEITHTDRYLN-----LRISDARRADRGEYQAHGVNSLGED 630
              W +            R   T +   +      L I    R+D+G Y     + L   
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197

Query: 631 VASFLVTVTDRPLPP 645
             S  V V + P+  
Sbjct: 198 KNSTFVRVHEDPIEG 212

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 10/117 (8%)

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV--SWYKDGFEIFSSR-- 497
            +            +   H       EK+             +  +W     +    +  
Sbjct: 95  YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 154

Query: 498 -RQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
            R             +STL I      D+G   C A++          +R+   P  
Sbjct: 155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDND- 506
            P  +    D    + E      + EG PTP + WYK G  + +     R  R++  +  
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 507 --ISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPP 546
                ++  + +  DEG   C A N  G +++  A L + A  
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH--- 599
           + PP I   +   D L+   GE   L     G P PT  W   GE + +      +H   
Sbjct: 7   DFPPRIV--EHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 600 ----TDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRP 642
               +  +L +      R D G Y     N LGE V     + V    
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 82.4 bits (203), Expect = 3e-17
 Identities = 37/271 (13%), Positives = 62/271 (22%), Gaps = 43/271 (15%)

Query: 375 DGGSPVLGYLVEHRRTG---SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 431
           DG  PV    V         +P     +        + V+  + G   +           
Sbjct: 28  DGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT-QRLTCAVILGNQS 86

Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF 491
            E     + +T+         P+    L      E  +V    +        ++      
Sbjct: 87  QE---TLQTVTIYS------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 137

Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG----HSITKARLRLEAPPT 547
               ++     T  D            +     C+AT        H      LR+   P 
Sbjct: 138 LGPRAQLLLKATPED------------NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185

Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR 607
           +       +    E            G P P  + L +G      G              
Sbjct: 186 LDERDCPGNWTWPE-NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE------------- 231

Query: 608 ISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
                R   G Y     ++ GE      V V
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 60.5 bits (146), Expect = 6e-10
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 22/125 (17%)

Query: 424 TAEN-VVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH--DTTALEDEKVEFTVQVEGIP 480
           +A   V G       +  L V Y       P         + T  E+ +     Q  G P
Sbjct: 160 SATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNP 213

Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
            P++   KDG           VT +              EG   C A +  G    +  +
Sbjct: 214 LPELKCLKDGTFPLPIGESVTVTRD-------------LEGTYLCRARSTQGEVTREVTV 260

Query: 541 RLEAP 545
            + +P
Sbjct: 261 NVLSP 265

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 78.1 bits (192), Expect = 3e-17
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG----YLVEHRRTGSPYWVRAS 399
           P   P  P +      +      + W+  + +           + +E        +    
Sbjct: 15  PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                 T  +V GLEP   Y+FR+   +  G  E    S  ++V    +  + PS
Sbjct: 71  TG--YATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 78.1 bits (192), Expect = 3e-17
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG----YLVEHRRTGSPYWVRAS 738
           P   P  P +      +      + W+  + +           + +E        +    
Sbjct: 15  PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70

Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                 T  +V GLEP   Y+FR+   +  G  E    S  ++V    +  + PS
Sbjct: 71  TG--YATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P    ++            + W+PP    G  +  Y++ +    +          +
Sbjct: 8   PTSAPKDLTVITREGK--PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETI 64

Query: 404 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                   +  L     Y FRI A N  G    GPLS+P+         + PS
Sbjct: 65  SGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFRTL--KVSGPS 112

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P    ++            + W+PP    G  +  Y++ +    +          +
Sbjct: 8   PTSAPKDLTVITREGK--PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETI 64

Query: 743 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                   +  L     Y FRI A N  G    GPLS+P+         + PS
Sbjct: 65  SGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFRTL--KVSGPS 112

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
           S       +             V  T +V   P+P++ W KDG          +      
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG--------VPLPLPPS- 56

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
             LI+ +    D+G   C AT+ +        + +
Sbjct: 57  PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
                + +  +   G     G  + L   +   P P   W+ +G PL        +    
Sbjct: 8   LEEVQLVVEPE---GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP----SPV-- 58

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
              L + +    D+G Y     +S      S  V+++
Sbjct: 59  ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
            P  + +  +    LL   G++++L+  +      +  WL +G  L    R  IT     
Sbjct: 8   QPWGVPVEVES---LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE--- 60

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
             + + D+  AD G Y     +  G D   F V V+
Sbjct: 61  -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 71.4 bits (175), Expect = 3e-15
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
           T+  Q  P         +        + ++   ++       ++W +DG ++  S R RI
Sbjct: 2   TLPEQAQP---WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRI 57

Query: 502 VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
             +     + +  +   D G   C  ++ +G   T   + 
Sbjct: 58  TGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 79.6 bits (195), Expect = 6e-17
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 30/194 (15%)

Query: 465 LEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEI 523
           + D + + +V +        ++W+KDG  I            D     +   A    G  
Sbjct: 12  VYDYQEDGSVLLTCDAEAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMY 64

Query: 524 KCTATNRAG-------------HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
           +C  +                  +   A  + +A          +             KV
Sbjct: 65  QCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKV 124

Query: 571 SMAG---------MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           S++G          P     W HN + +      +   +D         +     G Y  
Sbjct: 125 SISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 184

Query: 622 HGVNSLGEDVASFL 635
           +   S  ED   +L
Sbjct: 185 YPRGSKPEDANFYL 198

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 3/83 (3%)

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
             ++    V  T      P  ++ W  +   I      + +  ++    +   + L   G
Sbjct: 123 KVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 180

Query: 522 EIKCTATNRAGHSITKARLRLEA 544
              C              L L A
Sbjct: 181 YYVCYPRGSKP-EDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 7/97 (7%)

Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
                   W  +G+ +      +           +    +  RG YQ  G  +  + +  
Sbjct: 26  DAEAKNITWFKDGKMIGFLTEDKKK-------WNLGSNAKDPRGMYQCKGSQNKSKPLQV 78

Query: 634 FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGG 670
           +    +        AK             S+  ++ G
Sbjct: 79  YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMG 115

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 76.7 bits (189), Expect = 9e-17
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           R P  P    + P   S+      + W PPE      V GY + +             + 
Sbjct: 26  RVPEVPSSLHVRPLVTSI-----VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDY- 78

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
            +     +  L+P   Y   + A N VG     PL E      +   P++ 
Sbjct: 79  -KQRYYTIENLDPSSHYVITLKAFNNVGEGI--PLYESAVTRPHTSGPSSG 126

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           + P  P    + P   S+      + W PPE      V GY + +             + 
Sbjct: 26  RVPEVPSSLHVRPLVTSI-----VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDY- 78

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
            +     +  L+P   Y   + A N VG     PL E      +   P++ 
Sbjct: 79  -KQRYYTIENLDPSSHYVITLKAFNNVGEGI--PLYESAVTRPHTSGPSSG 126

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 12/114 (10%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDGF-EIFSSRRQRI-- 501
           S ++   FI      T    E + F  +V+       P + W+K  + ++ S   + +  
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 502 ------VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
                  +      + I +A     G  +C  T +         L +       
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 563 GEIIKLKVSMAGMP---PPTARWLHN---------GEPLTSGGRYEITHTDRYLNLRISD 610
           GE I     +        PT +W            G+ L     +E         ++I  
Sbjct: 22  GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 81

Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
           A+    G Y+         D  SF + V +       
Sbjct: 82  AKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 118

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P      ++   SPS      ++ W  P    G  VL Y V++   G+           
Sbjct: 7   GPPAVSDIRVTRSSPS----SLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT 61

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            +    + GL+ G  Y  ++ A +  G    GP  +      Q    + PS
Sbjct: 62  SENRAELRGLKRGASYLVQVRARSEAG---YGPFGQE--HHSQTQLDSGPS 107

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P      ++   SPS      ++ W  P    G  VL Y V++   G+           
Sbjct: 7   GPPAVSDIRVTRSSPS----SLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT 61

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            +    + GL+ G  Y  ++ A +  G    GP  +      Q    + PS
Sbjct: 62  SENRAELRGLKRGASYLVQVRARSEAG---YGPFGQE--HHSQTQLDSGPS 107

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 401
            P  P    + P +  +      + W PP  +    V GY++ +   GSPY   VR    
Sbjct: 17  VPDQPSSLHVRPQTNCI-----IMSWTPPL-NPNIVVRGYIIGYGV-GSPYAETVRVDSK 69

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                   +  LE    Y   + A N  G     PL E  T    RS  + PS
Sbjct: 70  ---QRYYSIERLESSSHYVISLKAFNNAGEGV--PLYESATT---RSITSGPS 114

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 740
            P  P    + P +  +      + W PP  +    V GY++ +   GSPY   VR    
Sbjct: 17  VPDQPSSLHVRPQTNCI-----IMSWTPPL-NPNIVVRGYIIGYGV-GSPYAETVRVDSK 69

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                   +  LE    Y   + A N  G     PL E  T    RS  + PS
Sbjct: 70  ---QRYYSIERLESSSHYVISLKAFNNAGEGV--PLYESATT---RSITSGPS 114

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 400
           P  PP   Q    S         I W      ++   +    Y V  +          + 
Sbjct: 4   PMMPPVGVQASILSHDT----IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA 59

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRAL 459
           +       +V+GL+P   Y+F +              S      T++  P + P  +  +
Sbjct: 60  N-ATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELVPTSPPKDVTVV 115

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 739
           P  PP   Q    S         I W      ++   +    Y V  +          + 
Sbjct: 4   PMMPPVGVQASILSHDT----IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA 59

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRAL 798
           +       +V+GL+P   Y+F +              S      T++  P + P  +  +
Sbjct: 60  N-ATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELVPTSPPKDVTVV 115

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PP    ++            + W+PP    G  + GY++ +    +          V
Sbjct: 105 PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 404 EDTELM--VSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
               L   +  L     Y F+I A N  G    GP+SE +     ++ 
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFRTPKAH 206

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PP    ++            + W+PP    G  + GY++ +    +          V
Sbjct: 105 PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161

Query: 743 EDTELM--VSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
               L   +  L     Y F+I A N  G    GP+SE +     ++ 
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFRTPKAH 206

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-----WVRA 398
            P  PG+      S +    V  + W  P    G  +  Y V +              + 
Sbjct: 98  VPSEPGRLAFNVVSST----VTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKV 152

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPAAAPSF 455
                ++  L++  L     Y++ + A N  G    GP  E +    T  + P + P  
Sbjct: 153 LVDNPKNRMLLIENLRESQPYRYTVKARNGAG---WGPEREAIINLATQPKRPMSIPII 208

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-----WVRA 737
            P  PG+      S +    V  + W  P    G  +  Y V +              + 
Sbjct: 98  VPSEPGRLAFNVVSST----VTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKV 152

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPAAAPSF 794
                ++  L++  L     Y++ + A N  G    GP  E +    T  + P + P  
Sbjct: 153 LVDNPKNRMLLIENLRESQPYRYTVKARNGAG---WGPEREAIINLATQPKRPMSIPII 208

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
             G P  P                 W PP        +GY V++   G            
Sbjct: 5   DLGAPQNPNAKAAGSRK----IHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLD-S 55

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
           +   + ++ L P   Y+ ++ A    G    GP S  ++    +   + P  +  
Sbjct: 56  KVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCRTHQEVPSEPGRLAF 107

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
             G P  P                 W PP        +GY V++   G            
Sbjct: 5   DLGAPQNPNAKAAGSRK----IHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLD-S 55

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
           +   + ++ L P   Y+ ++ A    G    GP S  ++    +   + P  +  
Sbjct: 56  KVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCRTHQEVPSEPGRLAF 107

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 79.1 bits (195), Expect = 5e-16
 Identities = 39/218 (17%), Positives = 65/218 (29%), Gaps = 25/218 (11%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           +P   P     +  S +       + W+  P ++    +L Y V   R  S        +
Sbjct: 3   RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NY 58

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
            V  T+L  +      RY   +T  N+VG S+    +                 ++A   
Sbjct: 59  TVNATKL--TVNLTNDRYLATLTVRNLVGKSDA---AVLTIPACDFQATHPVMDLKAFPK 113

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
              L    VE+T   E +    + W     +       +        T +      + E 
Sbjct: 114 DNML---WVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGN---LAES 167

Query: 522 ---EIKCTATNRAGH---SITKARLRLEAP---PTIRL 550
               I  T     G       KA L+   P   PT+R 
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRT 205

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 26/190 (13%), Positives = 39/190 (20%), Gaps = 62/190 (32%)

Query: 657 SVTLSWSE-PEDDGGCKIGNYIVEYFR--------------------------------- 682
           +V L W   P  +   KI +Y V   R                                 
Sbjct: 24  TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNL 83

Query: 683 -----------------PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 725
                               P    +  P    L      + W  P       +L + V 
Sbjct: 84  VGKSDAAVLTIPACDFQATHPVMDLKAFPKDNML-----WVEWTTPRESVKKYILEWCVL 138

Query: 726 HRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
             +      W +           +   L     Y   +T     G   PG          
Sbjct: 139 SDKAPCITDWQQEDGT--VHRTYLRGNLAESKCYLITVTPVYADG---PGSPESIKAYLK 193

Query: 785 QRSPAAAPSF 794
           Q  P+  P+ 
Sbjct: 194 QAPPSKGPTV 203

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P   P     +  S +       + W+  P ++    +L Y V   R  S        + 
Sbjct: 4   PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYT 59

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 801
           V  T+L  +      RY   +T  N+VG S+    +                 ++A    
Sbjct: 60  VNATKL--TVNLTNDRYLATLTVRNLVGKSDA---AVLTIPACDFQATHPVMDLKAFPKD 114

Query: 802 TAL 804
             L
Sbjct: 115 NML 117

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 63.3 bits (154), Expect = 9e-11
 Identities = 27/207 (13%), Positives = 49/207 (23%), Gaps = 63/207 (30%)

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGK--SVTLSWSEPEDDGGCKIGNYIVEY- 680
            N +G+  A+ L               +    K   + + W+ P +     +  YI+E+ 
Sbjct: 81  RNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRES----VKKYILEWC 136

Query: 681 ---------------------------FRP---------------PGPPGK-----PQLL 693
                                                        PG P        Q  
Sbjct: 137 VLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAP 196

Query: 694 PDSP------SLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMVEDTE 746
           P          + ++   + W+    D     +  Y + +R                 TE
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS--SHTE 254

Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEP 773
             +S L     Y  R+ A    G  + 
Sbjct: 255 YTLSSLTSDTLYMVRMAAYTDEGGKDG 281

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 7/93 (7%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPH 401
            PP      +      +       + W+    D     +  Y + +R             
Sbjct: 195 APPSKGPTVRTKKVGKN----EAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS 250

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
               TE  +S L     Y  R+ A    G  + 
Sbjct: 251 --SHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 281

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 10/100 (10%)

Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
            +             +    +       G P P   W+K+   +    ++          
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTI 548
            ++    L  +G   C   N      +K   + ++    +
Sbjct: 52  YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           +   I +            G  + L+    G P P  +W  N  PLT   +         
Sbjct: 2   SKLQICVEPT---SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------- 51

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTVTD 640
               +       +G Y  H  N      +    + + +
Sbjct: 52  --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 27/185 (14%)

Query: 461 DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
                + E V  T             W+ +G     +           S+L I  A   D
Sbjct: 13  WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62

Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPP 578
            GE KC        S             ++   +         G+ + L+          
Sbjct: 63  SGEYKCQHQQ-VNESEPVYLEVFSDWLLLQASAEV-----VMEGQPLFLRCHGWRNWDVY 116

Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVT 637
              +  +GE L         + +   N+ I++A   D G Y   G     +       +T
Sbjct: 117 KVIYYKDGEALKY------WYENH--NISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168

Query: 638 VTDRP 642
           V   P
Sbjct: 169 VIKAP 173

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEI 493
              SEP+ +            +        +E + +             KV +YKDG   
Sbjct: 73  VNESEPVYLEVFSDW-----LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG--- 124

Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIR 549
                + +    +   + I  A + D G   CT         ++   + +   P  +
Sbjct: 125 -----EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 563 GEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
           GE + L  +        + +W HNG                  +L I +A+  D GEY+ 
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKC 68

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
                   +     V      L      V+   G+ + L    W   
Sbjct: 69  QHQQVNESEPVYLEVFSDWLLLQASAEVVME--GQPLFLRCHGWRNW 113

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 80.4 bits (197), Expect = 1e-15
 Identities = 37/251 (14%), Positives = 68/251 (27%), Gaps = 31/251 (12%)

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV-SWYKDG---------- 490
           +       +  P  +      T      V      +     K  S YK            
Sbjct: 102 SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS 161

Query: 491 ---FEIFSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
                   + R R+    T   + +++I+Q  L D G+  C A + +  +   A L++  
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221

Query: 545 PPTIRLPKQYEDGLLF------EMGEIIKLKVSMAGMPPPTARWLHNG-EPLTSGGRYEI 597
           P    + +     + F      E+  + K     +            G       GR  +
Sbjct: 222 PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL 281

Query: 598 TH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP-----PGKAKV 650
                D   ++ I+  R+ D G Y     +       S +                   V
Sbjct: 282 NPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341

Query: 651 VMTLGKSVTLS 661
               G SV + 
Sbjct: 342 KGVAGSSVAVL 352

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.0 bits (157), Expect = 8e-11
 Identities = 35/261 (13%), Positives = 69/261 (26%), Gaps = 36/261 (13%)

Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF 491
           S+           +Q       +  R+      +    V          +  + ++    
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWE 370

Query: 492 EIFSSRRQRIVT-------------------DNDISTLIIHQAALMDEGEIKCTATNRAG 532
              + R   +V                     N   T+I++Q    D G   C       
Sbjct: 371 GAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL 430

Query: 533 HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPPTARWLHNGEP 588
              T     +E  P +++P          +GE +K+                +W + G  
Sbjct: 431 WRTTVEIKIIEGEPNLKVPGNVT----AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486

Query: 589 LT------SGGRYEITHTD-RYLNLRISDARRADRGEYQ-AHGVNSLGEDVASFLVTVTD 640
                       +     + R ++L ++   RAD G Y           + A+  V V +
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546

Query: 641 RPLPPGKAKVVMTLGKSVTLS 661
           R    G   V +    +    
Sbjct: 547 RK-AAGSRDVSLAKADAAPDE 566

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 64.6 bits (156), Expect = 1e-10
 Identities = 33/268 (12%), Positives = 61/268 (22%), Gaps = 44/268 (16%)

Query: 454 SFIRALHDTTALEDEKVEFTVQVE---GIPTPKVSWYKDGFE------IFSSRRQRIVTD 504
           S I    +  ++E   V  T            +  W + G        I S         
Sbjct: 2   SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61

Query: 505 NDIS----------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
              +           + I Q +  D G  KC     +        L +   P +    + 
Sbjct: 62  GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV 121

Query: 555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL------------TSGGRYEITHTD- 601
               L      I             + +   G                  GR  +     
Sbjct: 122 YTVDLGRT-VTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180

Query: 602 --RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVT 659
                ++ I+  R +D G+Y     +    +  +  + V           +      SVT
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL----RGSVT 236

Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPP 687
              +        ++ N      R     
Sbjct: 237 FHCALGP-----EVANVAKFLCRQSSGE 259

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDND---- 506
            P  I +     AL  EK +    +   P P +++W      + S    R   +      
Sbjct: 13  GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 507 --ISTLIIHQAALMDEGEI-KCTATNRAGHSITKARLRLEAPP 546
             ISTL I      D   I  CTA N  G      RL+ +   
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 30/122 (24%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLT 590
           G S +   L +  PP I   +          GE  ++K  +   PPP    W      L 
Sbjct: 1   GSSGSSGTLTVNGPPIISSTQTQH----ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56

Query: 591 SG--GRYEITHTDRYLN----LRISDARRADRG-EYQAHGVNSLGEDVASFLVTVTDRPL 643
           SG  GRY +            L IS+  RAD    Y     NS G D     +      +
Sbjct: 57  SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116

Query: 644 PP 645
             
Sbjct: 117 SG 118

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 10/110 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           PGP G         +       + W+ P    G  + GY +                   
Sbjct: 18  PGPVGHLSFSEILDT----SLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNV 72

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             E  V+GL     Y   + A    G    G +S          P + PS
Sbjct: 73  TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSAS--TISSGVPPSGPS 117

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 10/110 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           PGP G         +       + W+ P    G  + GY +                   
Sbjct: 18  PGPVGHLSFSEILDT----SLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNV 72

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             E  V+GL     Y   + A    G    G +S          P + PS
Sbjct: 73  TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSAS--TISSGVPPSGPS 117

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P      +      +      ++ W+ PE   G  +L Y +++           S    
Sbjct: 10  APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKA 63

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             T   VSGL+PG RY F++ A    G    G  S+ + V  +    + PS
Sbjct: 64  VTTRATVSGLKPGTRYVFQVRARTSAG---CGRFSQAMEV--ETGKPSGPS 109

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P      +      +      ++ W+ PE   G  +L Y +++           S    
Sbjct: 10  APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKA 63

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             T   VSGL+PG RY F++ A    G    G  S+ + V  +    + PS
Sbjct: 64  VTTRATVSGLKPGTRYVFQVRARTSAG---CGRFSQAMEV--ETGKPSGPS 109

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 32/194 (16%)

Query: 461 DTTALEDEKVEFTVQ--VEGIPTPKVSWYK-----------DGFEIFSSRRQRIVTDNDI 507
           +T     + +   +           + W K              E F  +    +  N  
Sbjct: 8   ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-- 65

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
            TL I      D+   K +  +  G ++ +    L+    +  PK      +        
Sbjct: 66  GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK------ISWTCINTT 119

Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
           L   +     P      +G+ L    R           +       +   +++    N +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKV 168

Query: 628 GEDVASFLVTVTDR 641
            ++ +   V+  ++
Sbjct: 169 SKESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 349 GKPQLLP-DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
           G+   L   S  +  D+  I+WE          +      R+    +  + +  + ++  
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWE---KTSDKKKIAQF---RKEKETFKEKDTYKLFKNGT 67

Query: 408 LMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
           L +  L+         ++++  +  G +    L +   +  Q    + P          +
Sbjct: 68  LKIKHLKTDDQDI---YKVSIYDTKGKNV---LEKIFDLKIQE-RVSKPK--------IS 112

Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
                   T +V     P+++ Y+DG  +  S+R           +I H+       + K
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFK 161

Query: 525 CTATNRAGHSITKARLR 541
           CTA N+     +   + 
Sbjct: 162 CTAGNKVSKESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 15/99 (15%)

Query: 574 GMPPPTARWLHNGEPLT----SGGRYEITHTDRYL-----NLRISDARRADRGEYQAHGV 624
                  +W    +          +      D Y       L+I   +  D+  Y+    
Sbjct: 27  SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86

Query: 625 NSLGEDVAS--FLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
           ++ G++V    F + + +R   P     +     + TL+
Sbjct: 87  DTKGKNVLEKIFDLKIQERVSKP----KISWTCINTTLT 121

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 71.0 bits (174), Expect = 5e-15
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P K +++  +P+       I W+ P     S V  Y + +  TG    V+      
Sbjct: 4   VSSVPTKLEVVAATPT----SLLISWDAPM--SSSSVYYYRITYGETGGNSPVQEFTVPY 57

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
             +   +SGL PG  Y   + A              P+++ Y
Sbjct: 58  SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINY 98

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 71.0 bits (174), Expect = 5e-15
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P K +++  +P+       I W+ P     S V  Y + +  TG    V+      
Sbjct: 4   VSSVPTKLEVVAATPT----SLLISWDAPM--SSSSVYYYRITYGETGGNSPVQEFTVPY 57

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
             +   +SGL PG  Y   + A              P+++ Y
Sbjct: 58  SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINY 98

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 71.9 bits (176), Expect = 5e-15
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 9/107 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND------ 506
                 LH    +    + F+V  +G P P + W  +G  +  +                
Sbjct: 3   MPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 507 -ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
               L ++Q   ++ G     A N  G +           P    P+
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 16/130 (12%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI------- 597
            P         +         I   V   G P P+ RWL NG  L               
Sbjct: 3   MPASVQLHTAVEMHH----WCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAA 56

Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL---PPGKAKVVMTL 654
             T R+  LR++     + G Y     N  G+  AS +    D P    P        + 
Sbjct: 57  NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNST 116

Query: 655 GKSVTLSWSE 664
                    E
Sbjct: 117 SGDPVEKKDE 126

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 462 TTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
            + LE + V    Q    P      W+ +   I S             +  I  A + D 
Sbjct: 17  YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDS 66

Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPT 579
           GE +C     +  S    +L +     +    ++     F+  + I L+  S        
Sbjct: 67  GEYRCQTNL-STLSDP-VQLEVHIGWLLLQAPRWV----FKEEDPIHLRCHSWKNTALHK 120

Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTV 638
             +L NG+           H +   +  I  A   D G Y   G+         +  +T+
Sbjct: 121 VTYLQNGKDRKY------FHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

Query: 639 T 639
           T
Sbjct: 173 T 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 14/100 (14%)

Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEI 493
             LS+P+ +            +         E++ +       +     KV++ ++G + 
Sbjct: 76  STLSDPVQLEVHIGWL-----LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130

Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
                      +  S   I +A L D G   C     + +
Sbjct: 131 KYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 16/107 (14%)

Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
            + + LK   A  P   + +W HN   ++S             +  I  A   D GEY+ 
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRC 71

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
               S   D     + V    L     + V      + L   SW   
Sbjct: 72  QTNLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P K +++  +P+       I W+         V  Y + +  TG    V+      
Sbjct: 7   VSSVPTKLEVVDATPT----SLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPG 61

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
             +   +SGL+PG  Y   + A +          + P+++ Y
Sbjct: 62  YYSTATISGLKPGVDYTITVYAYDTFFPG--YEPNSPISINY 101

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P K +++  +P+       I W+         V  Y + +  TG    V+      
Sbjct: 7   VSSVPTKLEVVDATPT----SLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPG 61

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
             +   +SGL+PG  Y   + A +          + P+++ Y
Sbjct: 62  YYSTATISGLKPGVDYTITVYAYDTFFPG--YEPNSPISINY 101

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           PG P   +  P+S +       + W PP       +  Y + ++        R +     
Sbjct: 18  PGQPLNFKAEPESET----SILLSWTPPR---SDTIANYELVYKDGEHGEEQRITIE--P 68

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            T   + GL+P   Y FR+ A +  G    G  +  ++       ++ PS
Sbjct: 69  GTSYRLQGLKPNSLYYFRLAARSPQG---LGASTAEISAR--TMQSSGPS 113

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           PG P   +  P+S +       + W PP       +  Y + ++        R +     
Sbjct: 18  PGQPLNFKAEPESET----SILLSWTPPR---SDTIANYELVYKDGEHGEEQRITIE--P 68

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            T   + GL+P   Y FR+ A +  G    G  +  ++       ++ PS
Sbjct: 69  GTSYRLQGLKPNSLYYFRLAARSPQG---LGASTAEISAR--TMQSSGPS 113

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 11/114 (9%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPH 740
            P   P        + +       ++W      +  +P+ G+ + +R T S         
Sbjct: 7   GPVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62

Query: 741 MVE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
           MVE       +S L+P   Y  ++   N  G       S  +   T  RS  ++
Sbjct: 63  MVEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICETKARSGPSS 113

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P   P        + +       ++W      +  +P+ G+ + +R T S         M
Sbjct: 8   PVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 63

Query: 403 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
           VE       +S L+P   Y  ++   N  G       S  +   T  RS  ++
Sbjct: 64  VEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICETKARSGPSS 113

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P        +  +        T+ W  PE   G  +L Y + +       +  +S    
Sbjct: 7   GPSTVPIMHQVSATMR----SITLSWPQPEQPNG-IILDYEIRYYEKEHNEFN-SSMARS 60

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
           +     + GL PG  Y  ++ A  V G    G  S  +   T   S  ++
Sbjct: 61  QTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQTLTDSGPSS 107

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P        +  +        T+ W  PE   G  +L Y + +       +  +S    
Sbjct: 7   GPSTVPIMHQVSATMR----SITLSWPQPEQPNG-IILDYEIRYYEKEHNEFN-SSMARS 60

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
           +     + GL PG  Y  ++ A  V G    G  S  +   T   S  ++
Sbjct: 61  QTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQTLTDSGPSS 107

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 55/466 (11%), Positives = 111/466 (23%), Gaps = 86/466 (18%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWE--PPEYDGGSPVLGYLVEHRRTGSPYWVR 397
             +     P  P++L  S         ++W      +   S V  + ++  R  S   V+
Sbjct: 77  NEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV-IWEIKVLRKESMELVK 135

Query: 398 ASPHMVEDTELMVSGLE--------PGWRYQFRITAE-NVVGFSEPGPLSEPLTVTYQRS 448
              H                         +   I    + + FS     S+      ++ 
Sbjct: 136 LVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDW--SPVKQI 193

Query: 449 PAAAPSFIRAL-HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
                S  +    D   L    + F    +      +  + +   I        +   +I
Sbjct: 194 SWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNI 253

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
           S                         +I    +    PP                    +
Sbjct: 254 S----------VSASSGTNVVFTTEDNIFGTVIFAGYPP----------------DTPQQ 287

Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
           L      +      W + G      G    ++T     L  S + +  R +         
Sbjct: 288 LNCETHDLKEIICSW-NPGRVTALVGPRATSYT-----LVESFSGKYVRLKRA------- 334

Query: 628 GEDVASFLVTVTDRPLPPGKA-----KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR 682
            E   +    +  + LP  +           LG+S +       +               
Sbjct: 335 -EAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKV------------- 380

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASP 739
            P  P   ++   + +       + W  P  +         +E +++ S      V    
Sbjct: 381 YPHTPTSFKVKDINST----AVKLSWHLPG-NFAKINFLCEIEIKKSNSVQEQRNVTIQG 435

Query: 740 HMVEDTELMVSGLEPGWRYQFRI--TAENVVGFSEPGPLSEPLTVT 783
                  + +  L P   Y FRI  + E    +S+    S      
Sbjct: 436 VENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKW---SNKKQHL 478

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 53/449 (11%), Positives = 103/449 (22%), Gaps = 94/449 (20%)

Query: 369 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 428
           W+ P   G        +E R            + +E T + +  L  G  Y+  I + + 
Sbjct: 16  WKAPSGTGRGTDYEVCIEQRSRSC--------YQLEKTSIKIPALSHG-DYEITINSLHD 66

Query: 429 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK 488
            G S          V+        P     L  +       +       G   P  S   
Sbjct: 67  FGSSTSKFTLNEQNVSL------IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVI 120

Query: 489 DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI----TKARLRLEA 544
              ++       +V      T +  +  L             A H +        L    
Sbjct: 121 WEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSG 180

Query: 545 PPTI--------------RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
                                K +    +  +G  I                  N   + 
Sbjct: 181 LEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH 240

Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV 650
             G        +  N+ +S            + V +  +++   ++     P  P +   
Sbjct: 241 LDGE---NVAIKIRNISVSA-------SSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290

Query: 651 VMTLGKSVTLSWSEPEDDG--GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRW 708
                K +  SW+        G +  +Y +      G   + +      +          
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVE-SFSGKYVRLKRAEAPTN---------- 339

Query: 709 EPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVV 768
                                             E  +L+   L     Y F + A N +
Sbjct: 340 ----------------------------------ESYQLLFQMLPNQEIYNFTLNAHNPL 365

Query: 769 GFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
           G S+    S  L    ++     P+  + 
Sbjct: 366 GRSQ----STILVNITEKVYPHTPTSFKV 390

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 56.4 bits (135), Expect = 3e-08
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 331 LNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHR 388
                +++  +     PP  PQ L    + D       W P       G     Y +   
Sbjct: 265 FTTEDNIFGTVIFAGYPPDTPQQLNCE-THDLKEIICSWNPGRVTALVGPRATSYTLVES 323

Query: 389 RTGSPYWV-RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
            +G    + RA     E  +L+   L     Y F + A N +G S+    S  L    ++
Sbjct: 324 FSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ----STILVNITEK 379

Query: 448 SPAAAPSFIRA 458
                P+  + 
Sbjct: 380 VYPHTPTSFKV 390

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 71.3 bits (174), Expect = 4e-14
 Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 17/195 (8%)

Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
             A   + V  T    G  +P  SW      I S    ++  +   STL ++  +  +E 
Sbjct: 11  YLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67

Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP---P 578
              CTAT  +       ++ + + P              E G+ I +K S+A + P    
Sbjct: 68  SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP---LEAGKPITVKCSVADVYPFDRL 124

Query: 579 TARWLHNGEPLTSGGRYEITHTDRY----LNLRISDARRADRGEYQAHGVNSLGEDVASF 634
               L     + S    E           L +  +                 + E  +  
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184

Query: 635 LVTVTDRPL----PP 645
            V    + L     P
Sbjct: 185 TVRQAVKELQVYISP 199

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRA 614
           E   L ++G+ + L  S  G   P   W    +   +G   ++T+      L ++     
Sbjct: 8   ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFG 64

Query: 615 DRGEYQAHGVNSLGEDVASFLVTVTDRPLPP-GKAKVVMTLGKSVTLSWSEPEDDGGCKI 673
           +   Y         +      V +   P  P       +  GK +T+          C +
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVK---------CSV 115

Query: 674 GNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 733
            +        P    +  LL     +    F    +    +  S  + +       G   
Sbjct: 116 ADV------YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL 169

Query: 734 WVRASPHMVE 743
             RA  H+ E
Sbjct: 170 VCRAKLHIDE 179

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 71.2 bits (174), Expect = 7e-14
 Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA 737
             Y   P PP    ++         +  + W  P       +L Y +++R   +  W + 
Sbjct: 98  PVYKVKPNPPHNLSVINSEEL--SSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQI 154

Query: 738 SPHMVED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSF 794
            P       +   V  L+P   Y FRI      G       SE  +  TY+  P+  PSF
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP    ++         +  + W  P       +L Y +++R   +  W +  P   
Sbjct: 103 KPNPPHNLSVINSEEL--SSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDT 159

Query: 404 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSF 455
               +   V  L+P   Y FRI      G       SE  +  TY+  P+  PSF
Sbjct: 160 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PP KP+ L      +       W+    +       + ++       +    +      +
Sbjct: 7   PPEKPKNL-SCIVNEGKKMRCEWDGGR-ETHLET-NFTLKSEWATHKFADCKAKRDTPTS 63

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
             +          +  + AEN +G      ++       + +P    S I 
Sbjct: 64  CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN 114

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           PP KP+ L      +       W+    +       + ++       +    +      +
Sbjct: 7   PPEKPKNL-SCIVNEGKKMRCEWDGGR-ETHLET-NFTLKSEWATHKFADCKAKRDTPTS 63

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 796
             +          +  + AEN +G      ++       + +P    S I 
Sbjct: 64  CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN 114

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 33/190 (17%)

Query: 462 TTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
              LE + V    Q    P      W+ +   I S             +  I  A + D 
Sbjct: 17  YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDS 66

Query: 521 GEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMP 576
           GE +C    +   S     ++LE       ++ P+       F+  + I L+  S     
Sbjct: 67  GEYRC----QTQLSTLSDPVQLEVHIGWLLLQAPRWV-----FKEEDPIHLRCHSWKNTA 117

Query: 577 PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFL 635
                +L NG+           H +   +  I  A   D G Y   G+         +  
Sbjct: 118 LHKVTYLQNGKGRKY------FHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169

Query: 636 VTVTDRPLPP 645
           +T+T      
Sbjct: 170 ITITQGLAVS 179

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 18/102 (17%)

Query: 435 GPLSEP--LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGF 491
             LS+P  L V            +         E++ +             KV++ ++G 
Sbjct: 76  STLSDPVQLEVHI-------GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128

Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
                           S   I +A L D G   C     + +
Sbjct: 129 GRKYFHHN--------SDFYIPKATLKDSGSYFCRGLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 16/107 (14%)

Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
            + + LK   A  P   + +W HN   ++S             +  I  A   D GEY+ 
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRC 71

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
               S   D     + V    L     + V      + L   SW   
Sbjct: 72  QTQLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 22/186 (11%), Positives = 46/186 (24%), Gaps = 26/186 (13%)

Query: 464 ALEDEKVEFTVQV--EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-------TLIIHQ 514
                 +   +          +V W +    +   +R+        +        L I  
Sbjct: 8   GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67

Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
               D G    T  +  G  I    L L     +  P  Y +           L   +  
Sbjct: 68  LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWEC------SNATLTCEVLE 121

Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
                 +     E L S  +  +++                R  ++   VN + ++    
Sbjct: 122 GTDVELKLYQGKEHLRSLRQKTMSYQW-----------TNLRAPFKCKAVNRVSQESEME 170

Query: 635 LVTVTD 640
           +V   +
Sbjct: 171 VVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 45/203 (22%)

Query: 353 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 412
           L   +  +  D+  +RW      G + V     E +R   P+    +  ++ + +L +  
Sbjct: 16  LNIPNFQMTDDIDEVRW----ERGSTLV----AEFKRKMKPFLKSGAFEILANGDLKIKN 67

Query: 413 LEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
           L     G    + +T  +  G      L++ L +       + P       + T      
Sbjct: 68  LTRDDSGT---YNVTVYSTNGTRI---LNKALDLRIL-EMVSKPMIYWECSNAT------ 114

Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
              T +V      ++  Y+    + S R+             +           KC A N
Sbjct: 115 --LTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVN 161

Query: 530 RAGHSITKARLRLEAPPTIRLPK 552
           R                 +  P+
Sbjct: 162 RVSQESEM--------EVVNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 562 MGEIIKLKVSMAGMPPPTA--RWLHNGEPLTS--GGRYEITHTDRYL-----NLRISDAR 612
           +G  I L +    M       RW      +            +  +      +L+I +  
Sbjct: 10  LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69

Query: 613 RADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
           R D G Y     ++ G  + +  + +        K  +      + TL+
Sbjct: 70  RDDSGTYNVTVYSTNGTRILNKALDLRILE-MVSKPMIYWE-CSNATLT 116

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 74.7 bits (184), Expect = 1e-13
 Identities = 23/270 (8%), Positives = 75/270 (27%), Gaps = 30/270 (11%)

Query: 5   RSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLA 64
           R+              L +     ++   E          +Q +   +    K+ ++   
Sbjct: 754 RASEQTKSDYLKRANELVQWIND-KQASLESRDFGDSIESVQSFMNAH-KEYKKTEKPPK 811

Query: 65  MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMK 124
            +    +++  Y       Q + + +  +           ++     A++     +   +
Sbjct: 812 GQ-EVSELEAIYN----SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK--AEQEHAE 864

Query: 125 RDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYL 184
             R      K+  V +Q+  R    + K+  ++   K       +              +
Sbjct: 865 ALRIELKRQKKIAVLLQKYNR----ILKKLENWATTKSVYLGSNE----------TGDSI 910

Query: 185 HELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQA 244
             ++A    ++       ++  Q    +    A +T         + + +   +A+    
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTG 970

Query: 245 RRFRFKLNLRKYERVIELLKLKREQERQEK 274
                 +     E     L  + E+ ++ +
Sbjct: 971 ------VKSSA-ETYKNTLLAELERLQKIE 993

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 30/253 (11%), Positives = 79/253 (31%), Gaps = 22/253 (8%)

Query: 31  DEREFCMIRSKTIV-IQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQY 89
           +ER     +S  +    +  +     ++   E      S   +Q +        +  ++ 
Sbjct: 752 EERASEQTKSDYLKRANELVQWIN-DKQASLESRDFGDSIESVQSFMN----AHKEYKKT 806

Query: 90  LALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLT 149
                           + ++      L K +  +        E+     ++++  + +  
Sbjct: 807 EKPPKGQEVSE--LEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA- 863

Query: 150 MRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRE 209
               R      K+ A ++Q++ R  K +   A      K+  +       +  A++ + +
Sbjct: 864 -EALRIELKRQKKIAVLLQKYNRILKKLENWA----TTKSVYLGSNETGDSITAVQAKLK 918

Query: 210 RYVALRTATITIQTRFRAYLIAKNQRDEYA------ELKQARRFRFKLNLRKYERVIELL 263
              A      +++ +  + L++   +          EL + +   F       +   E  
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 978

Query: 264 K--LKREQERQEK 274
           K  L  E ER +K
Sbjct: 979 KNTLLAELERLQK 991

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 55.4 bits (134), Expect = 1e-07
 Identities = 14/194 (7%), Positives = 55/194 (28%), Gaps = 13/194 (6%)

Query: 1   MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
            +Q   +  +       +Q+   +    ++ E+           ++  +       + + 
Sbjct: 776 DKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEV--SELEAIYNSL----QTKL 829

Query: 61  EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAK 120
             +  +            +     A +   A +      R E  + K   + +Q   +  
Sbjct: 830 RLIKREPFVAPAGLTPNEIDSTWSALE--KAEQEHAEALRIELKRQKKIAVLLQKYNR-- 885

Query: 121 LLMKRDRAAYTELKQACVSVQQRWRANLTMRKQ-RAHFLLMKQKASVIQQWYRNTKLMRL 179
             + +    +   K   +   +   +   ++ + +       +  S+  Q   +   +  
Sbjct: 886 --ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILA 943

Query: 180 EASYLHELKAATIT 193
           + + L+      +T
Sbjct: 944 QLTELNYNGVPELT 957

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 12/144 (8%), Positives = 34/144 (23%), Gaps = 46/144 (31%)

Query: 172 RNTKLMRLEASYLHELKAATITIQ-----RRYRANVAMRTQRERYVALRTATITIQTRFR 226
           R   L +LE     E   +    +     +        +           +  ++Q+   
Sbjct: 743 RAGVLAQLEEERASEQTKSDYLKRANELVQWIND----KQASLESRDFGDSIESVQSFMN 798

Query: 227 AYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSL 286
           A+           E K+  +                             + Q   +++++
Sbjct: 799 AHK----------EYKKTEKPP---------------------------KGQEVSELEAI 821

Query: 287 WKMYRVRKKFADIIEQKKQAKKTA 310
           +   + + +          A  T 
Sbjct: 822 YNSLQTKLRLIKREPFVAPAGLTP 845

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
             + W+PP      P+ G LV   R   P            T L ++ LEP   Y+ RI 
Sbjct: 18  AVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIV 73

Query: 425 AENVVGFSEP 434
           A N   +S P
Sbjct: 74  ARNGQQYSPP 83

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
             + W+PP      P+ G LV   R   P            T L ++ LEP   Y+ RI 
Sbjct: 18  AVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIV 73

Query: 764 AENVVGFSEP 773
           A N   +S P
Sbjct: 74  ARNGQQYSPP 83

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 344 PPGPPGKP-QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
                G   +L+   P        + W           L Y +        +       M
Sbjct: 8   AESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-----M 58

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
           V +  ++++ L+P   Y  R+     +G   PGP S      ++ SP + PS 
Sbjct: 59  VLEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPD--HEFRTSPPSGPSS 106

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 683 PPGPPGKP-QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
                G   +L+   P        + W           L Y +        +       M
Sbjct: 8   AESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-----M 58

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
           V +  ++++ L+P   Y  R+     +G   PGP S      ++ SP + PS 
Sbjct: 59  VLEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPD--HEFRTSPPSGPSS 106

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP    L  ++P    D   + W PP       VL Y + +         ++     
Sbjct: 7   GRSPPSNLALASETP----DSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPG 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             + + +  L+   +Y+  ++A    G       SE ++ T Q +  + PS
Sbjct: 59  ARSHVTLPDLQAATKYRVLVSAIYAAGR------SEAVSATGQTACPSGPS 103

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP    L  ++P    D   + W PP       VL Y + +         ++     
Sbjct: 7   GRSPPSNLALASETP----DSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPG 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             + + +  L+   +Y+  ++A    G       SE ++ T Q +  + PS
Sbjct: 59  ARSHVTLPDLQAATKYRVLVSAIYAAGR------SEAVSATGQTACPSGPS 103

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 69.6 bits (169), Expect = 4e-13
 Identities = 29/239 (12%), Positives = 45/239 (18%), Gaps = 61/239 (25%)

Query: 460 HDTTALEDEKVEFT---VQVEGIPTPKVSWYKDGFEIFSSRRQRI--------------- 501
            +        VE             P +SW K      S++  +                
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 502 --------------VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA-------RL 540
                         V +    TL +      D G   C     +  +           ++
Sbjct: 70  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
               P         E   + E G  I +             W        +         
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDE-GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188

Query: 601 DRYL---------------------NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
                                    NL I  A+  D G          GE  A    T+
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 67.2 bits (163), Expect = 2e-12
 Identities = 35/239 (14%), Positives = 63/239 (26%), Gaps = 30/239 (12%)

Query: 326 EAITGLNVGTDLYCVIKKPPGPPGKPQ---LLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 382
           E   G  V  +L C  +        P    L   SP     VF   +    + G      
Sbjct: 13  EVHAGGTV--ELPCSYQLANDTQ-PPVISWLKGASPDRSTKVFKGNYN---WQGEGLGFV 66

Query: 383 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
               ++ +   +  RAS   +    L ++ + P    ++          +E G  ++ + 
Sbjct: 67  ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126

Query: 443 VTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD------------- 489
           +       +    +         E   +  T          V+WY               
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQ 186

Query: 490 --------GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
                   G   FSS      + +    L+I  A + D G + C      G        
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P   P        S +       ++W   P  +  +P+ G+ + +R T S         +
Sbjct: 4   PITGPHIAYTEAVSDT----QIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59

Query: 403 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           VE      M+  L+P   Y  ++   N  G       S  +   
Sbjct: 60  VEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P   P        S +       ++W   P  +  +P+ G+ + +R T S         +
Sbjct: 4   PITGPHIAYTEAVSDT----QIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59

Query: 742 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           VE      M+  L+P   Y  ++   N  G       S  +   
Sbjct: 60  VEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 69.9 bits (170), Expect = 6e-13
 Identities = 30/266 (11%), Positives = 59/266 (22%), Gaps = 60/266 (22%)

Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
            +      W  N   +       I  T   +      +    +          L ++V  
Sbjct: 37  HVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI-QLTCNILTFGQLEQNVYG 95

Query: 634 FLVTVTDRPLPPGKAKVVMTLGKSVTLS-----------------------WSEPEDDGG 670
             +     P  P     ++  GK +                          +++ +    
Sbjct: 96  ITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRD 155

Query: 671 CKIGNYI-------VEY-FR-----------------------PPGPPGKPQLLPDSPSL 699
                 +       V                             P PP    ++      
Sbjct: 156 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL- 214

Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPHMVEDTELMVSGLEPGWR 757
              +  + W  P       +L Y +++R   +  W  +         +   V  L+P   
Sbjct: 215 -SSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTE 272

Query: 758 YQFRITAENVVGFSEPGPLSEPLTVT 783
           Y FRI      G       SE  +  
Sbjct: 273 YVFRIRCMKEDGKGYWSDWSEEASGI 298

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 66.4 bits (161), Expect = 9e-12
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 401
            P PP    ++         +  + W  P       +L Y +++R   +  W  +     
Sbjct: 199 KPNPPHNLSVINSEEL--SSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDT 255

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               +   V  L+P   Y FRI      G       SE  +  
Sbjct: 256 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 28/184 (15%), Positives = 45/184 (24%), Gaps = 55/184 (29%)

Query: 636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL--- 692
           +        P   +V      +++L W  P          Y + Y  P G   + ++   
Sbjct: 1   INAGTDLDNPKDLEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPVD 56

Query: 693 -------------------------------------LPDSP------SLDRDVFTIRWE 709
                                                +  SP       +  +  T+ W 
Sbjct: 57  STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT 116

Query: 710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG 769
           PP     S V  Y V +           +      T   +  L PG  Y   I +     
Sbjct: 117 PPR----SRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFE 171

Query: 770 FSEP 773
            SEP
Sbjct: 172 ESEP 175

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 17/115 (14%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P   ++   + +      ++RW  P     +    Y + +            P  V
Sbjct: 6   DLDNPKDLEVSDPTET----TLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--V 55

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
           + T  ++ GL+ G  Y   + AE     S+P       T     +   +P  I  
Sbjct: 56  DSTSFILRGLDAGTEYTISLVAEKGRHKSKP-------TTIKGSTVVGSPKGISF 103

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 17/115 (14%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P   ++   + +      ++RW  P     +    Y + +            P  V
Sbjct: 6   DLDNPKDLEVSDPTET----TLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--V 55

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
           + T  ++ GL+ G  Y   + AE     S+P       T     +   +P  I  
Sbjct: 56  DSTSFILRGLDAGTEYTISLVAEKGRHKSKP-------TTIKGSTVVGSPKGISF 103

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 17/119 (14%)

Query: 328 ITGLNVGTD----LYCVIKKPPGPP--GKPQLLPDSP------SLDRDVFTIRWEPPEYD 375
           + GL+ GT+    L     +    P   K   +  SP       +  +  T+ W PP   
Sbjct: 62  LRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-- 119

Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
             S V  Y V +           +      T   +  L PG  Y   I +      SEP
Sbjct: 120 --SRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 175

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 25/204 (12%), Positives = 44/204 (21%), Gaps = 65/204 (31%)

Query: 625 NSLGEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY- 680
           +S      S  +      +    P     V     S+ L W+         I  Y +   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSS---TIIGYRITVV 59

Query: 681 --------------------------------FR-------------------PPGPPGK 689
                                                                   PP  
Sbjct: 60  AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119

Query: 690 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
            +     P        + W PP       +  +LV +    +   V        D  +++
Sbjct: 120 LRFTNIGPD----TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 172

Query: 750 SGLEPGWRYQFRITAENVVGFSEP 773
           + L PG  Y   +++      S P
Sbjct: 173 TNLLPGTEYVVSVSSVYEQHESTP 196

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 14/120 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P     +  + S       +RW P      S ++GY +     G    +       
Sbjct: 22  EVPQPTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 74

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
                 V+GLEPG  Y   +      G S P       T   Q++    P+ +R  +   
Sbjct: 75  SVGYYTVTGLEPGIDYDISVYTVKNGGESTP-------TTLTQQTAVPPPTDLRFTNIGP 127

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 14/120 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P     +  + S       +RW P      S ++GY +     G    +       
Sbjct: 22  EVPQPTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 74

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
                 V+GLEPG  Y   +      G S P       T   Q++    P+ +R  +   
Sbjct: 75  SVGYYTVTGLEPGIDYDISVYTVKNGGESTP-------TTLTQQTAVPPPTDLRFTNIGP 127

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP   +     P        + W PP       +  +LV +    +   V       
Sbjct: 113 AVPPPTDLRFTNIGPD----TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 165

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
            D  ++++ L PG  Y   +++      S P
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTP 196

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 401
           P G P    +   + S       + W+PP      G  ++ Y V  R   S   ++    
Sbjct: 8   PSGFPQNLHVTGLTTS----TTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNI-- 60

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              DT   ++GL+P   Y  ++ A    G    GPLS  +   
Sbjct: 61  -TTDTRFTLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 740
           P G P    +   + S       + W+PP      G  ++ Y V  R   S   ++    
Sbjct: 8   PSGFPQNLHVTGLTTS----TTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNI-- 60

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              DT   ++GL+P   Y  ++ A    G    GPLS  +   
Sbjct: 61  -TTDTRFTLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P K +++  +P+       I W+       S V  Y + +  TG    V+      
Sbjct: 4   VSSVPTKLEVVAATPT----SLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPG 55

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
             +   +SGL PG  Y   + A              P ++ Y
Sbjct: 56  SSSTATISGLSPGVDYTITVYAYYSYYDLYYS--YSPSSINY 95

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P K +++  +P+       I W+       S V  Y + +  TG    V+      
Sbjct: 4   VSSVPTKLEVVAATPT----SLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPG 55

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
             +   +SGL PG  Y   + A              P ++ Y
Sbjct: 56  SSSTATISGLSPGVDYTITVYAYYSYYDLYYS--YSPSSINY 95

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P K +++  +P+       I W+ P       V  Y + +  TG    V+      
Sbjct: 28  VSDVPTKLEVVAATPT----SLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPG 79

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
             +   +SGL+PG  Y   + A   +     G  S+P+++ Y
Sbjct: 80  SKSTATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINY 119

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P K +++  +P+       I W+ P       V  Y + +  TG    V+      
Sbjct: 28  VSDVPTKLEVVAATPT----SLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPG 79

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
             +   +SGL+PG  Y   + A   +     G  S+P+++ Y
Sbjct: 80  SKSTATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINY 119

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P   Q    S +       ++W+ PE   G  + GY V +    + +      H V
Sbjct: 18  PSSAPRDVQARMLSST----TILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNV 72

Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            D     +  L P   Y  ++ A   +G    GPLS  + V       + PS
Sbjct: 73  ADSQITTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVI--TQTGSGPS 119

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P   Q    S +       ++W+ PE   G  + GY V +    + +      H V
Sbjct: 18  PSSAPRDVQARMLSST----TILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNV 72

Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            D     +  L P   Y  ++ A   +G    GPLS  + V       + PS
Sbjct: 73  ADSQITTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVI--TQTGSGPS 119

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 58/430 (13%), Positives = 110/430 (25%), Gaps = 57/430 (13%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 421
           F +RW   +   G+  + +  ++++TG   W++ S                L      + 
Sbjct: 23  FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 80

Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
           RI AE     S      E  + T  R     P  +    +  A+       T        
Sbjct: 81  RIRAEKE-NTSSW---YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWAL 136

Query: 482 PKVSW-YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
             +S+ Y       SS  +  + +      I     L  E                KA L
Sbjct: 137 DGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK---LSPETTYCLKV---------KAAL 184

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
                  +  P       +       +             +W    +   +   +++   
Sbjct: 185 LTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKW----DYTYANMTFQVQWL 240

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV-VMTLGKSVT 659
             +L     +     +       V +                   G   + V     + T
Sbjct: 241 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVF-------PQNVFQKGIYLLRVQASDGNNT 293

Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV 719
             WSE                 +    P    +   S S       I    P+  G +PV
Sbjct: 294 SFWSEEI---------KFDTEIQAFLLPPVFNIRSLSDSF-----HIYIGAPKQSGNTPV 339

Query: 720 -----LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG-FSEP 773
                L Y +      S    +      + T++ V  L+P   Y  +  A  +    ++ 
Sbjct: 340 IQDYPLIYEIIFWENTSNAERKII---EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKS 396

Query: 774 GPLSEPLTVT 783
              S+ +   
Sbjct: 397 SVFSDAVCEK 406

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 52.3 bits (124), Expect = 5e-07
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-----LGYLVEHRRTGSPYWVRA 398
              PP    +   S S       I    P+  G +PV     L Y +      S    + 
Sbjct: 309 FLLPPVF-NIRSLSDSF-----HIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKI 362

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTVT 444
                + T++ V  L+P   Y  +  A  +    ++    S+ +   
Sbjct: 363 I---EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 66.2 bits (161), Expect = 2e-12
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 9/140 (6%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P +  +       +     I+W  P+    S +  Y++  R   S    + +       
Sbjct: 2   GPVEVFITETPSQPNS--HPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLN 56

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 466
              + GL+PG  Y+ ++ +    G  E    +     T   S     + +     T    
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEV---TRFDFTTTSTSTPVTSNTVTGE-TTPFSP 112

Query: 467 DEKVEFTVQVEGIPTPKVSW 486
                 +V      +  VSW
Sbjct: 113 LVATSESVTEITASSFVVSW 132

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 64.7 bits (157), Expect = 8e-12
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P +  +       +     I+W  P+    S +  Y++  R   S    + +       
Sbjct: 2   GPVEVFITETPSQPNS--HPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLN 56

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              + GL+PG  Y+ ++ +    G  E    +     T   S     +
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEV---TRFDFTTTSTSTPVTSN 101

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  P           +     F + W          V G+ VE+  +      +      
Sbjct: 109 PFSPLVATSESVTEITASS--FVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPS 162

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
             T + +  L PG +Y   +   +  G    
Sbjct: 163 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 193

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  P           +     F + W          V G+ VE+  +      +      
Sbjct: 109 PFSPLVATSESVTEITASS--FVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPS 162

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
             T + +  L PG +Y   +   +  G    
Sbjct: 163 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 193

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
              P +  +   S +    V  + W PP     + V   L+++   G             
Sbjct: 15  IDGPTQILVRDVSDT----VAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPP 66

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
            ++  V  L PG RY+  I+A      S+    S     T       AP  +R    T 
Sbjct: 67  LSQYSVQALRPGSRYEVSISAVRGTNESDA---SSTQFTT----EIDAPKNLRVGSRTA 118

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
              P +  +   S +    V  + W PP     + V   L+++   G             
Sbjct: 15  IDGPTQILVRDVSDT----VAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPP 66

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
            ++  V  L PG RY+  I+A      S+    S     T       AP  +R    T 
Sbjct: 67  LSQYSVQALRPGSRYEVSISAVRGTNESDA---SSTQFTT----EIDAPKNLRVGSRTA 118

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 34/200 (17%), Positives = 47/200 (23%), Gaps = 61/200 (30%)

Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV----- 678
           V    E  AS     T+    P   +V      S+ L W   E +       Y V     
Sbjct: 88  VRGTNESDASSTQFTTE-IDAPKNLRVGSRTATSLDLEWDNSEAE----AQEYKVVYSTL 142

Query: 679 -----------------------------EY-FR-------PPGPP--GKPQLLPDSPS- 698
                                        EY              P     +   DSP  
Sbjct: 143 AGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRD 202

Query: 699 -----LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 753
                      ++ W         P+  Y +    +         P   + T   ++ LE
Sbjct: 203 LMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVP--RDRTSYTLTDLE 256

Query: 754 PGWRYQFRITAENVVGFSEP 773
           PG  Y   ITAE     S  
Sbjct: 257 PGAEYIISITAERGRQQSLE 276

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 24/222 (10%), Positives = 51/222 (22%), Gaps = 75/222 (33%)

Query: 637 TVTDRPLP--PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-------------- 680
                P+   P +  V         + W+ P       +   +++Y              
Sbjct: 8   GGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAK----VDFILLKYGLVGGEGGKTTFRL 63

Query: 681 -------------------FR-------------------PPGPPGKPQLLPDSPSLDRD 702
                                                       P   ++   + +    
Sbjct: 64  QPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTAT---- 119

Query: 703 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPHMVEDTELMVSGLEPGWRYQF 760
              + W+  E    +    Y V +       +  V     +   T+  ++ L PG  Y  
Sbjct: 120 SLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGV 175

Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
            I+A            S P T+   R+   +P  +     + 
Sbjct: 176 GISAVM------NSKQSIPATMN-ARTELDSPRDLMVTASSE 210

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
           A+ G N               P   ++   + +       + W+  E    +    Y V 
Sbjct: 87  AVRGTNESDASSTQFTTEIDAPKNLRVGSRTAT----SLDLEWDNSE----AEAQEYKVV 138

Query: 387 HRRTGSPYW--VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           +       +  V     +   T+  ++ L PG  Y   I+A            S P T+ 
Sbjct: 139 YSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM------NSKQSIPATMN 192

Query: 445 YQRSPAAAPSFIRALHDTT 463
             R+   +P  +     + 
Sbjct: 193 -ARTELDSPRDLMVTASSE 210

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 10/108 (9%)

Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
           A+             +     P    +   S        ++ W         P+  Y + 
Sbjct: 179 AVMNSKQSIPATMNARTELDSPRDLMVTASSE----TSISLIWTKAS----GPIDHYRIT 230

Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
              +         P   + T   ++ LEPG  Y   ITAE     S  
Sbjct: 231 FTPSSGISSEVTVP--RDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 67.7 bits (164), Expect = 3e-12
 Identities = 42/317 (13%), Positives = 74/317 (23%), Gaps = 41/317 (12%)

Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
           P P++ W          R+QR+      S + +                  +   + +  
Sbjct: 33  PEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVE 92

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH 599
           LR   P     P    +           L            +W    E            
Sbjct: 93  LRAGYP-----PAIPHNLSCLMNLTTSSL----------ICQWEPGPETHLP-------- 129

Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVT 659
           T   L    S      +G+     V   G+   S                + +    ++ 
Sbjct: 130 TSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLL---LYQNMGIWVQAENALG 186

Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGS 717
            S S                      PP    +   P++         + WEP +     
Sbjct: 187 TSMSPQL--------CLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI 238

Query: 718 PVLGYLVEHRRT-GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 776
                 + H+   G   W    P  +E  +  + GL P   Y  +I              
Sbjct: 239 N-QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDW 297

Query: 777 SEPLTVTYQRSPAAAPS 793
           S  L +    +   A +
Sbjct: 298 SPSLELR---TTERAAA 311

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 59.6 bits (143), Expect = 2e-09
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPY 394
           D   V+K  P         P++         + WEP +           + H+   G   
Sbjct: 196 DPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHIN-QKCELRHKPQRGEAS 254

Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           W    P  +E  +  + GL P   Y  +I              S  L +    +   A +
Sbjct: 255 WALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR---TTERAAA 311

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 23/223 (10%), Positives = 51/223 (22%), Gaps = 42/223 (18%)

Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
               P P   W    E    G +  ++   +   + +            +    +  + +
Sbjct: 29  SHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQIL 88

Query: 632 ASFLVTVTDRPLPPGKAKVVMTLGK-SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKP 690
               +     P  P     +M L   S+   W EP  +      ++ ++ F+  G     
Sbjct: 89  DQVELRAGYPPAIPHNLSCLMNLTTSSLICQW-EPGPETHLPT-SFTLKSFKSRGNC--- 143

Query: 691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 750
                           + +              ++                     +   
Sbjct: 144 ----------------QTQGDSI----------LDCVPKDGQSHCS----------IPRK 167

Query: 751 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            L         + AEN +G S    L        +  P    +
Sbjct: 168 HLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRT 210

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 7/114 (6%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PP  P  L    +L       +WEP   +   P    L   +  G+      S       
Sbjct: 98  PPAIPHNLSCLMNLTTSSLICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPK 156

Query: 407 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           +      +    L         + AEN +G S    L        +  P    +
Sbjct: 157 DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRT 210

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
            T+ W PP     + + GY + +  +  P   +        T + ++GL PG  Y   + 
Sbjct: 18  ITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVY 73

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
           A            S PL  T           
Sbjct: 74  ALKDNQ------ESPPLVGTQTTGGHHHHHH 98

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
            T+ W PP     + + GY + +  +  P   +        T + ++GL PG  Y   + 
Sbjct: 18  ITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVY 73

Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
           A            S PL  T           
Sbjct: 74  ALKDNQ------ESPPLVGTQTTGGHHHHHH 98

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 62.8 bits (152), Expect = 5e-12
 Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 10/110 (9%)

Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFS---SRRQRIVTDND---- 506
           +   H       EK+             +   W     +        R            
Sbjct: 12  LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71

Query: 507 -ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYE 555
            +STL I      D+G   C A++          +R+   P +      E
Sbjct: 72  FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 121

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 20/113 (17%)

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA--RWLHNGEPLTSG---GR 594
           + L     I L            GE + L  +            W +            R
Sbjct: 10  VVLSPSHGIELSV----------GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 59

Query: 595 YEITHTDRYLN-----LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
              T +   +      L I    R+D+G Y     + L     S  V V ++P
Sbjct: 60  DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 37/334 (11%), Positives = 111/334 (33%), Gaps = 16/334 (4%)

Query: 11   LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYL-LMRKERQEYLAMKSSA 69
            +    I  Q   R  LA R+   +          IQ   R ++ +               
Sbjct: 791  ITDVIIAFQAQCRGYLA-RKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPL 849

Query: 70   VKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAA 129
            +K+      +Q   +  Q+    +     + +E  +        + L + KL  + +  A
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 130  YTELKQACVSVQQRWRANL---------TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLE 180
              E  +  ++ +++    +            ++     L  +K  + QQ     + +  E
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ--LQAEKKKMQQQMLDLEEQLEEE 967

Query: 181  ASYLHELKAATITIQRRYR-ANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYA 239
             +   +L+   +T   + +     +    ++   L      ++ R         + +E A
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 240  ELKQARRFRFKLNLRKYERVIELLKLKRE--QERQEKYRHQCAVKIQSLWKMYRVRKKFA 297
            +     + + +  + + E  ++  +  R+  ++ + K   + +   + + ++     +  
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 298  DIIEQKKQAKKTADNQFENQAPLYVRLEEAITGL 331
              + +K++  + A  + E++        + I  L
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 32/272 (11%), Positives = 90/272 (33%), Gaps = 28/272 (10%)

Query: 48   YFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLK 107
            +FR  +L   E +  L +    +  Q   R       AR+ +   +           +  
Sbjct: 774  FFRTGVLAHLEEERDLKITDVIIAFQAQCR----GYLARKAFAKRQ-----------QQL 818

Query: 108  HATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVI 167
             +   IQ   ++   M      +  L      + +  R    M+ +       K++    
Sbjct: 819  ESIFCIQYNVRS--FMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKA 876

Query: 168  QQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQ-RERYVALRTATITIQTRFR 226
            +      +L  LE  +    +   + +Q + +A   +  +  E  V L      ++    
Sbjct: 877  EA-----ELKELEQKHTQLCEEKNL-LQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930

Query: 227  AYLI-AKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQS 285
                  + + +   +L+  ++ + +  +   E  +E  +  R++ + EK       KI+ 
Sbjct: 931  EMEARIEEEEERSQQLQAEKK-KMQQQMLDLEEQLEEEEAARQKLQLEK--VTADGKIKK 987

Query: 286  LWKMYRVRKKFADIIEQKKQAKKTADNQFENQ 317
            +     + +   + + ++++  +   +     
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 37/224 (16%)

Query: 121 LLMKRDRAAYTELKQACVSVQQR-------WRANLTMRKQRAHFL---------LMKQKA 164
           L        + + KQAC+ + +        +R   +    R   L          +    
Sbjct: 736 LAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVI 795

Query: 165 SVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTR 224
              Q   R   L R   +   +   +   IQ   R+ +           L      +   
Sbjct: 796 IAFQAQCR-GYLARKAFAKRQQQLESIFCIQYNVRSFMN-VXHWPWM-XLFFXIXPLLKV 852

Query: 225 FRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQ 284
            R     + + +E    K              ER  +     +E E++     +    +Q
Sbjct: 853 TRQEEEMQAKDEELQRTK--------------ERQQKAEAELKELEQKHTQLCEEKNLLQ 898

Query: 285 SLWKMYRVRKKFADIIEQKKQAKKTADNQFENQA-PLYVRLEEA 327
              +        A+ +  +  AKK    + E     +  R+EE 
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKK---QELEEILHEMEARIEEE 939

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.3 bits (158), Expect = 1e-11
 Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 57/246 (23%)

Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQV---EGIPTPKVSW---------------YK 488
           RS    P    +         E V     V   E     +V W               Y 
Sbjct: 1   RSQGL-PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYY 59

Query: 489 DGFEIFSSR-RQRIVTDNDIS----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
               + + R + R     D      +L++      DEG   C    +    + K  + L 
Sbjct: 60  SNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP---TARWLHNGEPLTSGGRYEITHT 600
             P      +    L   +G+  +++ S+            W+ +    T         +
Sbjct: 120 VLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173

Query: 601 DRYLN------------------------LRISDARRADRGEYQAHGVNSLGEDVASFLV 636
           +                            +++   + +D+G Y         E   + ++
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233

Query: 637 TVTDRP 642
            V    
Sbjct: 234 HVVQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 32/253 (12%), Positives = 63/253 (24%), Gaps = 56/253 (22%)

Query: 340 VIKKPP---GPPGKPQLLP--DSPSLDRDVFTIRW--EPPEYDGGSPVLGYLVEHRRTGS 392
           +    P      G+  L+      + ++ V  + W     + D    VL Y         
Sbjct: 8   LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67

Query: 393 PYWVRASPH---MVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
            +  R+         D  L++  ++    G  Y   I         +   +     V   
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGI-YTCEI-------RLKNESMVMKKPVELW 119

Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---KVSWYKDG------------- 490
             P           D      +  +    ++        KV+W                 
Sbjct: 120 VLPEEP-------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYD 172

Query: 491 -------FEIFSSRRQRIVTDNDIS----TLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
                  F+     R R+    DIS    ++ +      D+G   C+       S     
Sbjct: 173 SNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232

Query: 540 LR-LEAPPTIRLP 551
           L  ++      + 
Sbjct: 233 LHVVQDEFQRTIS 245

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 33/223 (14%), Positives = 57/223 (25%), Gaps = 25/223 (11%)

Query: 437 LSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEI 493
            +    +T   +P        A   +     + +    QVEG        V   +   E+
Sbjct: 74  STAKTFLTVYWTP---ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL 130

Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH--------SITKARLRLEAP 545
              +R+  V +    T  +            C                +    +L+    
Sbjct: 131 ---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187

Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA---RWLHNGEPLTSGGRYEITHTDR 602
           P    P Q     + E+     +  S+ G+ P +          + L     Y     D 
Sbjct: 188 P--ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY---GNDS 242

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           +           D G  +      LG      L TVT    P 
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 23/214 (10%), Positives = 55/214 (25%), Gaps = 25/214 (11%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
                    V  T          +              ++ +     +  +   + + ++
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIET-------PLPKKELLLPGNNRKVYELSNVQED 60

Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-- 578
            +  C +    G S  K  L +   P     +         +G+ + L+  + G  P   
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVYWTP--ERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 579 -TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY--------QAHGVNSLGE 629
            T   L   + L    R         +   +   R      +        +  G+     
Sbjct: 119 LTVVLLRGEKELK---REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175

Query: 630 DVASFLVTVTDRPLPPGK--AKVVMTLGKSVTLS 661
             A + +     P  P +  +  V+ +    T+ 
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV 209

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDG-FEIFSSRRQRI------ 501
              F+    D        + F+ +V G      P V W+K    ++ S   Q +      
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 502 --VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
              +   +  L I  A     G  +C  + +     +   L
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 563 GEIIKLKVSMAGMP---PPTARWLHNGE---PLTSGGRYEITHTDR------YLNLRISD 610
           G  I     +AG     PP  +W            G   ++  +           L I+D
Sbjct: 19  GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78

Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
           A+ A  G Y+         D ++F +TV +
Sbjct: 79  AQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 12/104 (11%)

Query: 440 PLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSR 497
           PL       P+      +      +      V F    +   P   + W +       SR
Sbjct: 2   PLAA-----PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR 56

Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
                 D +   L I      D G   CT +N        A L 
Sbjct: 57  A----MDFN-GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
             P  + + +Q         G  +     + +  P  T  W             +     
Sbjct: 7   SKPIMVTVEEQ--RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI- 63

Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
               L I + + +D G Y   G N    D  +  + V
Sbjct: 64  ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 16/115 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIR--WEPPEYDGGSP---VLGYLVEHRRTGSPYWVRA 398
           P  PP   Q +  +         +R  W             V  Y V  R + S      
Sbjct: 18  PMLPPVGVQAVALTHD------AVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
           S           +GL+P   Y+F +              S      TY+ S  ++
Sbjct: 72  SED-TTSLSYTATGLKPNTMYEFSVMVTKNRR---SSTWSMTAHATTYEASGPSS 122

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 16/115 (13%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIR--WEPPEYDGGSP---VLGYLVEHRRTGSPYWVRA 737
           P  PP   Q +  +         +R  W             V  Y V  R + S      
Sbjct: 18  PMLPPVGVQAVALTHD------AVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
           S           +GL+P   Y+F +              S      TY+ S  ++
Sbjct: 72  SED-TTSLSYTATGLKPNTMYEFSVMVTKNRR---SSTWSMTAHATTYEASGPSS 122

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 401
           P  PP K   +    +       + W PP  D   G  +  Y V +         R    
Sbjct: 18  PSAPPQKVMCVSMGST----TVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVD 72

Query: 402 MV--EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 458
            +  E +   + GLE    Y+  + A   VG   PGP S P+ V T +  P+  P  + +
Sbjct: 73  GISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLVRTDEDVPSGPPRKVES 129

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 740
           P  PP K   +    +       + W PP  D   G  +  Y V +         R    
Sbjct: 18  PSAPPQKVMCVSMGST----TVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVD 72

Query: 741 MV--EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 797
            +  E +   + GLE    Y+  + A   VG   PGP S P+ V T +  P+  P  + +
Sbjct: 73  GISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLVRTDEDVPSGPPRKVES 129

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
            P  PP    L   +P        + W+P      +    YLV                 
Sbjct: 7   GPLPPPRALTLAAVTP----RTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQ 57

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           V   E+++ GLEPG  Y+  + +      SE             R+P + PS
Sbjct: 58  VGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEA-------RGIRARTPTSGPS 102

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
            P  PP    L   +P        + W+P      +    YLV                 
Sbjct: 7   GPLPPPRALTLAAVTP----RTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQ 57

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           V   E+++ GLEPG  Y+  + +      SE             R+P + PS
Sbjct: 58  VGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEA-------RGIRARTPTSGPS 102

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 19/117 (16%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPH 401
              PP        S         + WE        PV    V +  +  G      A  +
Sbjct: 7   GLAPPRHLGFSDVSHD----AARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGN 58

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
               T  M+  L     Y  R+T     G       S  LT       A +PS   +
Sbjct: 59  ---ATSAMLGPLSSSTTYTVRVTCLYPGG------GSSTLTGRVTTKKAPSPSSGPS 106

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 19/117 (16%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPH 740
              PP        S         + WE        PV    V +  +  G      A  +
Sbjct: 7   GLAPPRHLGFSDVSHD----AARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGN 58

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
               T  M+  L     Y  R+T     G       S  LT       A +PS   +
Sbjct: 59  ---ATSAMLGPLSSSTTYTVRVTCLYPGG------GSSTLTGRVTTKKAPSPSSGPS 106

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
             I WE P+      V  Y V +                E+    + GL PG  Y   + 
Sbjct: 18  IKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73

Query: 425 AENVVGFSEP 434
           A +    S+P
Sbjct: 74  ALHDDMESQP 83

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
             I WE P+      V  Y V +                E+    + GL PG  Y   + 
Sbjct: 18  IKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73

Query: 764 AENVVGFSEP 773
           A +    S+P
Sbjct: 74  ALHDDMESQP 83

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P + ++   + +       I W PP      PV G+ + +     P          
Sbjct: 2   RLDAPSQIEVKDVTDT----TALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTE 53

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
           ++ +  +  L+P   Y+  + +      S P
Sbjct: 54  DENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P + ++   + +       I W PP      PV G+ + +     P          
Sbjct: 2   RLDAPSQIEVKDVTDT----TALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTE 53

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
           ++ +  +  L+P   Y+  + +      S P
Sbjct: 54  DENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHRRTGSPYWVRASPHM 402
           P   P    +     +   D   IRW  P        ++GY + H    +         +
Sbjct: 18  PSVAPLNVTV---FLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV 74

Query: 403 VED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            ++ +   +S          RI A    G    GP S+P+ +       + PS
Sbjct: 75  GQNGSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKIFI--PAHSGPS 122

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHRRTGSPYWVRASPHM 741
           P   P    +     +   D   IRW  P        ++GY + H    +         +
Sbjct: 18  PSVAPLNVTV---FLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV 74

Query: 742 VED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            ++ +   +S          RI A    G    GP S+P+ +       + PS
Sbjct: 75  GQNGSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKIFI--PAHSGPS 122

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 431 FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG 490
            S  G   + +TV            I            + E T Q EG P  +V W    
Sbjct: 99  ISYGGADYKRITVKVNAPYNKINQRI----LVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154

Query: 491 FEIFSSRRQRIVTDND------ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            ++ S +     +  +       STL I+           CT           A L +  
Sbjct: 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TNEIFYCTFRRLDPEENHTAELVIPE 211

Query: 545 PPTIRLPKQ 553
            P    P +
Sbjct: 212 LPLAHPPNE 220

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 24/211 (11%), Positives = 46/211 (21%), Gaps = 32/211 (15%)

Query: 463 TALEDEKVEFTVQVEGIPTP-----KVSWYKDGFEIFSSRRQRIVTDNDIS--------- 508
                  +    +             V W  +   I              S         
Sbjct: 12  VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71

Query: 509 ---------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLL 559
                     L I    L D G  +C   +  G    +  +++ AP      +       
Sbjct: 72  KDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVD-- 128

Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS---DARRADR 616
             +    +L     G P     W  +   + SG               ++          
Sbjct: 129 -PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187

Query: 617 GEYQAHGVNSLGEDVASFLVTVTDRPL--PP 645
             +         E+  +  + + + PL  PP
Sbjct: 188 EIFYCTFRRLDPEENHTAELVIPELPLAHPP 218

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 8/91 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
                    +   + S     F + W          V G+ VE+  +      +      
Sbjct: 5   SHLVATSESVTEITAS----SFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPS 56

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
             T + +  L PG +Y   +   +  G    
Sbjct: 57  TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 87

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 8/91 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
                    +   + S     F + W          V G+ VE+  +      +      
Sbjct: 5   SHLVATSESVTEITAS----SFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPS 56

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
             T + +  L PG +Y   +   +  G    
Sbjct: 57  TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 87

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 17/106 (16%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----------RRQRI 501
               +  L D    + E   F++ +  I      W+ +G E+ S+           R RI
Sbjct: 8   TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65

Query: 502 VTDNDISTLIIHQAALMDEG-EIKCTATNRAGHSITKARLRLEAPP 546
                   LI+H     D G  +  +           A L ++   
Sbjct: 66  EQKGLQHRLILHAVKHQDSGALVGFSCPGVQ----DSAALTIQESS 107

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 22/113 (19%)

Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS----------GGRY 595
            T RL    ED  +++ GE     + ++ +   T  W  NGE L S            RY
Sbjct: 7   GTARLVAGLEDVQVYD-GEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRY 63

Query: 596 EITHTDRYLNLRISDARRADRGEY---QAHGVNSLGEDVASFLVTVTDRPLPP 645
            I        L +   +  D G        GV        S  +T+ +   P 
Sbjct: 64  RIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQD------SAALTIQESSGPS 110

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
             + W  P+    +    ++++++ +              +    ++GL+PG  Y   I 
Sbjct: 18  LRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                        S PL+  +         
Sbjct: 74  GVKGGH------RSNPLSAEFTTGGHHHHH 97

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
             + W  P+    +    ++++++ +              +    ++GL+PG  Y   I 
Sbjct: 18  LRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73

Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                        S PL+  +         
Sbjct: 74  GVKGGH------RSNPLSAEFTTGGHHHHH 97

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P   P    L   +         I W+PP      G  + GY + +R+      V  +  
Sbjct: 18  PSAAPQNLSLEVRNSK----SIMIHWQPPAPATQNG-QITGYKIRYRKASRKSDVTETLV 72

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAP 453
                  ++ GL+ G  Y FR+ A  + G    GP ++ L+  T++       
Sbjct: 73  SGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAETFESDLDETR 122

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
           P   P    L   +         I W+PP      G  + GY + +R+      V  +  
Sbjct: 18  PSAAPQNLSLEVRNSK----SIMIHWQPPAPATQNG-QITGYKIRYRKASRKSDVTETLV 72

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAP 792
                  ++ GL+ G  Y FR+ A  + G    GP ++ L+  T++       
Sbjct: 73  SGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAETFESDLDETR 122

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
              P   +++  +P+       I W+            Y + +  TG    V+       
Sbjct: 4   SDVPRDLEVVAATPT----SLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGP 55

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGP---LSEPLTVTYQRSPAAAPS 454
                +SGL+PG  Y   + A         GP      P+++ Y R+    PS
Sbjct: 56  VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINY-RTEIDKPS 107

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
              P   +++  +P+       I W+            Y + +  TG    V+       
Sbjct: 4   SDVPRDLEVVAATPT----SLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGP 55

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGP---LSEPLTVTYQRSPAAAPS 793
                +SGL+PG  Y   + A         GP      P+++ Y R+    PS
Sbjct: 56  VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINY-RTEIDKPS 107

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 19/114 (16%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYW--VRASP 400
           P  PPG          +      + WE     +  S V GY V +R +       +  + 
Sbjct: 18  PSQPPGNVVWNATDTKV-----LLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK 72

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
              E        L     Y   + A    G    G  SE + +   R  ++ PS
Sbjct: 73  TSAELV------LPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 19/114 (16%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYW--VRASP 739
           P  PPG          +      + WE     +  S V GY V +R +       +  + 
Sbjct: 18  PSQPPGNVVWNATDTKV-----LLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK 72

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              E        L     Y   + A    G    G  SE + +   R  ++ PS
Sbjct: 73  TSAELV------LPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P GPP    L P +         + W+ P  E   G  + GY + +R        + S  
Sbjct: 15  PDGPPMDVTLQPVTSQS----IQVTWKAPKKELQNG-VIRGYQIGYRENSPGSNGQYSIV 69

Query: 402 MV----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
            +    +     +  L+   +Y   + A N  G    GP S  +   T +  P++ 
Sbjct: 70  EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINATTLESGPSSG 122

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
           P GPP    L P +         + W+ P  E   G  + GY + +R        + S  
Sbjct: 15  PDGPPMDVTLQPVTSQS----IQVTWKAPKKELQNG-VIRGYQIGYRENSPGSNGQYSIV 69

Query: 741 MV----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
            +    +     +  L+   +Y   + A N  G    GP S  +   T +  P++ 
Sbjct: 70  EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINATTLESGPSSG 122

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDND---- 506
           P         +A+    V FT          ++  W  D   +  +  +           
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 507 ----ISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARL 540
                + L +       EG  +C  +N  G S +  A L
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 11/87 (12%)

Query: 563 GEIIKLKVSMAGMPPP--TARWLHNGEPLTSGGRYEITHTDRYLN--------LRISDAR 612
           G  +    S A       T  W  + E L         H              LR+ +  
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 613 RADRGEYQAHGVNSLGEDVAS-FLVTV 638
               G YQ    N  G   +    +T+
Sbjct: 85  FTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 63.9 bits (156), Expect = 3e-10
 Identities = 22/273 (8%), Positives = 75/273 (27%), Gaps = 25/273 (9%)

Query: 5    RSDYLNLRAKTILIQTLWRSKLA-----MRRDEREFCMIRSKTIVIQKYFRGYLLMRKER 59
            R   L           L R+         ++   E          +Q +   +    K+ 
Sbjct: 758  REQRLGSEQ--TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKT 814

Query: 60   QEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKA 119
            ++    +    +++  Y +L    Q + + +  +           ++     A++     
Sbjct: 815  EKPPKGQ-EVSELEAIYNSL----QTKLRLIKREPFVAPAGLTPNEIDSTWSALEK--AE 867

Query: 120  KLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRL 179
            +   +  R      K+  V +Q+  R    +        +                 ++ 
Sbjct: 868  QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 927

Query: 180  EASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYA 239
              ++  E +    +++ +  +++     +   +         + +            ++ 
Sbjct: 928  LEAFDGECQ----SLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF------FAQQWT 977

Query: 240  ELKQARRFRFKLNLRKYERVIELLKLKREQERQ 272
             +K +        L + ER+ ++  L       
Sbjct: 978  GVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 20/208 (9%), Positives = 56/208 (26%), Gaps = 29/208 (13%)

Query: 119 AKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMR 178
           A++   R++     L           RA   + +                 W       +
Sbjct: 752 ARIEEAREQR----LGSEQTKSDYLKRA-NELVQ-----------------WIN----DK 785

Query: 179 LEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEY 238
             +    +   +  ++Q    A+   +   +           ++  + +           
Sbjct: 786 QASLESRDFGDSIESVQSFMNAHKEYKKTEKP--PKGQEVSELEAIYNSLQTKLRLIKRE 843

Query: 239 AELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFAD 298
             +  A     +++           +       + K + + AV +Q   ++ +  + +A 
Sbjct: 844 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 903

Query: 299 IIEQKKQAKKTADNQFENQAPLYVRLEE 326
                  + +T D+    QA     LE 
Sbjct: 904 TKSVYLGSNETGDSITAVQA-KLKNLEA 930

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 32/321 (9%), Positives = 88/321 (27%), Gaps = 59/321 (18%)

Query: 19  QTLWRSKLAMRRDEREFCMIRSKTIVIQK----------YFRGYLLMR--KERQEYLAMK 66
             L  +      D ++      K + I            +FR   L R  + R++ L   
Sbjct: 706 YLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLG-- 763

Query: 67  SSAVKIQEWYRNLQC-----MRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKL 121
           S   K     R  +       +QA  +                    +  ++Q+   A  
Sbjct: 764 SEQTKSDYLKRANELVQWINDKQASLES--------------RDFGDSIESVQSFMNAHK 809

Query: 122 LMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEA 181
             K+                ++      + +  A +  ++ K  +I++       +    
Sbjct: 810 EYKK---------------TEKPPKGQEVSELEAIYNSLQTKLRLIKRE----PFVAPAG 850

Query: 182 SYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAEL 241
              +E+ +    +++  + +      R      +   + +Q   R     +N     +  
Sbjct: 851 LTPNEIDSTWSALEKAEQEHAEAL--RIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908

Query: 242 KQARRFRFKLN-----LRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKF 296
             +      +      L+  E      +    Q   +       +   +   +  + ++ 
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968

Query: 297 ADIIEQKKQAKKTADNQFENQ 317
                Q+    K++   ++N 
Sbjct: 969 DTFFAQQWTGVKSSAETYKNT 989

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSPYWVRASP 400
           P  PP    L   +         + W PP      G   + GY + HR+T     +    
Sbjct: 28  PSAPPQNVSLEVVNSR----SIKVSWLPPPSGTQNG--FITGYKIRHRKTTRRGEMETLE 81

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               +   + +GLE G +Y F+++A  V G    GP S   T  
Sbjct: 82  --PNNLWYLFTGLEKGSQYSFQVSAMTVNG---TGPPSNWYTAE 120

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSPYWVRASP 739
           P  PP    L   +         + W PP      G   + GY + HR+T     +    
Sbjct: 28  PSAPPQNVSLEVVNSR----SIKVSWLPPPSGTQNG--FITGYKIRHRKTTRRGEMETLE 81

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
               +   + +GLE G +Y F+++A  V G    GP S   T  
Sbjct: 82  --PNNLWYLFTGLEKGSQYSFQVSAMTVNG---TGPPSNWYTAE 120

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 58.1 bits (140), Expect = 4e-10
 Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 47/171 (27%)

Query: 623 GVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR 682
           G +    D  +             K        ++V L+WS P      +     V    
Sbjct: 1   GSSGSSGDEET--KAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPE-- 56

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
                                               + GY V    TG     + S ++ 
Sbjct: 57  ------------------------------------LYGYEVLISSTGKDGKYK-SVYVG 79

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           E+T + ++ L+P   Y  ++ AE        G  SE    T   + +  P 
Sbjct: 80  EETNITLNDLKPAMDYHAKVQAEYNSI---KGTPSEAEIFT---TLSCEPD 124

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 27/123 (21%)

Query: 344 PPGPPGKPQLLPDSPSLDRDV----FTIRWEPPEYDGGS--------PVLGYLVEHRRTG 391
                 KP           D+      + W PP               + GY V    TG
Sbjct: 17  LLSNIVKPVAS--------DIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG 68

Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451
                + S ++ E+T + ++ L+P   Y  ++ AE        G  SE    T   + + 
Sbjct: 69  KDGKYK-SVYVGEETNITLNDLKPAMDYHAKVQAEYNSI---KGTPSEAEIFT---TLSC 121

Query: 452 APS 454
            P 
Sbjct: 122 EPD 124

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P +  +   S S      ++ WE         V  Y + +              + 
Sbjct: 18  PSEAPTEVGVKVLSSS----EISVHWEHVL---EKIVESYQIRYWAAHDKEEAANRVQVT 70

Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                  +  L P  +Y   + A N  G    GP S+ +    +   A+ PS
Sbjct: 71  SQEYSARLENLLPDTQYFIEVGACNSAG---CGPPSDMIEAFTK--KASGPS 117

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P +  +   S S      ++ WE         V  Y + +              + 
Sbjct: 18  PSEAPTEVGVKVLSSS----EISVHWEHVL---EKIVESYQIRYWAAHDKEEAANRVQVT 70

Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                  +  L P  +Y   + A N  G    GP S+ +    +   A+ PS
Sbjct: 71  SQEYSARLENLLPDTQYFIEVGACNSAG---CGPPSDMIEAFTK--KASGPS 117

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 12/114 (10%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRAS 399
            P  PP   Q    S         I W      ++   +    Y V  +        +  
Sbjct: 7   GPMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYK 61

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
                    +V+GL+P   Y+F +              S      T++ S  ++
Sbjct: 62  NANATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELSGPSS 112

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 12/113 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 739
           P  PP   Q    S         I W      ++   +    Y V  +        +   
Sbjct: 8   PMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYKN 62

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
                   +V+GL+P   Y+F +              S      T++ S  ++
Sbjct: 63  ANATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELSGPSS 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 1/88 (1%)

Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
               A   + +      +     KV       ++ S      V+  +   L   +  + D
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQVED 312

Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPT 547
            G   C A     +      L++     
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL 340

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+ + ++               + E + S G           +L     +  D G Y  +
Sbjct: 261 GDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQVEDGGVYTCY 319

Query: 623 GVNSLGEDVASFLVTVTDRPLPPG 646
            +     +  S  + V +  L   
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGH 343

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P PP +  +    P   +    I+W PP       G   L Y +  +   +  W      
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA- 161

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 444
             + TE  +  L PG +Y  ++  +   G+ S     S    + 
Sbjct: 162 -GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAW---SPATFIQ 201

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 740
           P PP +  +    P   +    I+W PP       G   L Y +  +   +  W      
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA- 161

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 783
             + TE  +  L PG +Y  ++  +   G+ S     S    + 
Sbjct: 162 -GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAW---SPATFIQ 201

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PPGKP++     S +++ FT  W P   DGG P   Y + + R G         ++    
Sbjct: 3   PPGKPEIF-KCRSPNKETFTCWWRPGT-DGGLPT-NYSLTYHREGETLMHECPDYITGGP 59

Query: 407 E---LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
                          Y   + A N +G S    L   +T   Q  P
Sbjct: 60  NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDP 105

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           PPGKP++     S +++ FT  W P   DGG P   Y + + R G         ++    
Sbjct: 3   PPGKPEIF-KCRSPNKETFTCWWRPGT-DGGLPT-NYSLTYHREGETLMHECPDYITGGP 59

Query: 746 E---LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
                          Y   + A N +G S    L   +T   Q  P
Sbjct: 60  NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDP 105

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 38 IRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALK 93
          +R+  I IQK  RG+L     R+ YL M+ +A+ +Q + R      QAR     L+
Sbjct: 4  LRAACIRIQKTIRGWL----LRKRYLCMQRAAITVQRYVR----GYQARCYAKFLR 51

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 187 LKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQAR 245
           L+AA I IQ+  R        R+RY+ ++ A IT+Q   R Y      R     L++ +
Sbjct: 4   LRAACIRIQKTIR----GWLLRKRYLCMQRAAITVQRYVRGYQ----ARCYAKFLRRTK 54

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 11 LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMK 66
          LRA  I IQ   R  L  +R    +  ++   I +Q+Y RGY      R     ++
Sbjct: 4  LRAACIRIQKTIRGWLLRKR----YLCMQRAAITVQRYVRGYQ----ARCYAKFLR 51

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 133 LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAAT 191
           L+ AC+ +Q+  R        R  +L M++ A  +Q++ R     R  A +L   KAAT
Sbjct: 4   LRAACIRIQKTIR----GWLLRKRYLCMQRAAITVQRYVRG-YQARCYAKFLRRTKAAT 57

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 105 KLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKA 164
           KL+ A I IQ   +  LL KR    Y  +++A ++VQ+  R        R +   +++  
Sbjct: 3   KLRAACIRIQKTIRGWLLRKR----YLCMQRAAITVQRYVRGYQ----ARCYAKFLRRTK 54

Query: 165 SVI 167
           +  
Sbjct: 55  AAT 57

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 24/73 (32%)

Query: 65  MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKL--- 121
           ++++ ++IQ+  R                      R+ +L ++ A I +Q   +      
Sbjct: 4   LRAACIRIQKTIR------------------GWLLRKRYLCMQRAAITVQRYVRGYQARC 45

Query: 122 ---LMKRDRAAYT 131
               ++R +AA T
Sbjct: 46  YAKFLRRTKAATT 58

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
             + W  P         GYL+     G        P     T   + GL P   Y  R+ 
Sbjct: 24  ALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLP--GGITSHQLLGLFPSTSYNARLQ 77

Query: 425 AENVVGFSEP 434
           A        P
Sbjct: 78  AMWGQSLLPP 87

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
             + W  P         GYL+     G        P     T   + GL P   Y  R+ 
Sbjct: 24  ALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLP--GGITSHQLLGLFPSTSYNARLQ 77

Query: 764 AENVVGFSEP 773
           A        P
Sbjct: 78  AMWGQSLLPP 87

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 14/116 (12%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P  P  L      +     + W+PP+    +PV  Y ++    G+P     +P      
Sbjct: 7   GPDGPTQLRALNLTEGFA-VLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETP--GSAV 59

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
           +  +  L     Y   +        + P             +   AP  + A   T
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEAKEVT 108

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 14/116 (12%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P  P  L      +     + W+PP+    +PV  Y ++    G+P     +P      
Sbjct: 7   GPDGPTQLRALNLTEGFA-VLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETP--GSAV 59

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 801
           +  +  L     Y   +        + P             +   AP  + A   T
Sbjct: 60  DYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEAKEVT 108

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 53.7 bits (128), Expect = 6e-09
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P G  G  ++         +   I+W  P+    S +  Y++  R   S    + +    
Sbjct: 2   PLGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPG 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSE 433
                 + GL+PG  Y+ ++ +    G  E
Sbjct: 59  HLNSYTIKGLKPGVVYEGQLISIQQYGHQE 88

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 53.7 bits (128), Expect = 6e-09
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P G  G  ++         +   I+W  P+    S +  Y++  R   S    + +    
Sbjct: 2   PLGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPG 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSE 772
                 + GL+PG  Y+ ++ +    G  E
Sbjct: 59  HLNSYTIKGLKPGVVYEGQLISIQQYGHQE 88

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 7e-09
 Identities = 20/82 (24%), Positives = 31/82 (37%)

Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
                 E   V+F  + +G P P + W      + S++    +T     TL +  A + D
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQD 452

Query: 520 EGEIKCTATNRAGHSITKARLR 541
            G   C A N  G+    A L 
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLH 474

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLT--SGGRYE 596
                        Q         G  ++      G PPP   WL      ++  S GR  
Sbjct: 380 FTCRRARIRDRKAQQVFVDE---GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436

Query: 597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
           +   D  L   +  A+  D G Y     N+ G D     + V 
Sbjct: 437 V-FPDGTLE--VRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSP---YWVR 397
           P   PG  ++   + +    +  + W+P       G   + GY + + +T S        
Sbjct: 14  PMVAPGNVRVNVVNST----LAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRH 67

Query: 398 ASPHMVE----DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 449
               ++      T  M+ GLEP   Y   +   N  G    GP S      T + S 
Sbjct: 68  IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTPEGSG 121

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSP---YWVR 736
           P   PG  ++   + +    +  + W+P       G   + GY + + +T S        
Sbjct: 14  PMVAPGNVRVNVVNST----LAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRH 67

Query: 737 ASPHMVE----DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 788
               ++      T  M+ GLEP   Y   +   N  G    GP S      T + S 
Sbjct: 68  IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTPEGSG 121

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDIST 509
           AP  + A  D    E    E   +    P   V W      + S  SR  RI   ND  T
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND-GT 408

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
           L      L D G   C  TN AG+S   A L +    T      +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT-HHHHHH 452

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 19/118 (16%)

Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL--KVSMAGMPPPTARWLH-NGEPLT 590
            + +A  +  AP  +  P+     L    G + +L  +      P  + +WL  NG  L+
Sbjct: 342 EVDQASFQCSAPFIMDAPRD----LNISEGRMAELKCRTP----PMSSVKWLLPNGTVLS 393

Query: 591 S---GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
                 R  + +      L  S    +D G Y     N  G   AS  + V+      
Sbjct: 394 HASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS--TAGT 446

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 11/109 (10%), Positives = 29/109 (26%), Gaps = 10/109 (9%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
            S        T  E + +             + W              ++ ++       
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 509 -----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
                ++ +    L DEG  KC   + +  +  + ++ + A       +
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLHYSDSVST-KEVKVIVLATMKGEFCR 109

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITH-TDRYLNLRISDARR 613
           G+ + LK   +     + +WL         N  P+    +Y++ H +   L++ + +   
Sbjct: 16  GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTL 75

Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
            D G Y+     S         V V       
Sbjct: 76  QDEGVYKC-LHYSDSVSTKEVKVIVLATMKGE 106

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTL 510
           P  +    D    E    E   +        VSW      + +  + + RI   +D  TL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSD-GTL 399

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPP 546
                 + D G   C  +N  G++   A L       
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 12/116 (10%)

Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSG 592
            + +      AP  +  P      L    G   +LK   A     +  W+  NG  +T G
Sbjct: 331 ELDQNYFTCYAPVIVEPPAD----LNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHG 385

Query: 593 ---GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
               R  +        L  ++    D G Y     NS+G   AS  + VT      
Sbjct: 386 AYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 32/190 (16%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI----------FSSRRQRIVTDNDISTL 510
               +    V F V    +P  +V W K   ++          FSS + R+  D    +L
Sbjct: 4   QIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
            I+     DE E +  + N       K  L +    +   P       ++       L  
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTM--KFFLYVLEMVSK--PM------IYWECSNATLTC 112

Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
            +        +     E L S  +             +S      R  ++   VN + ++
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQE 161

Query: 631 VASFLVTVTD 640
               +V   +
Sbjct: 162 SEMEVVNCPE 171

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 332 NVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 391
                   +          P  L    + +     +RW PP     +  + Y V+     
Sbjct: 106 GAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQ 165

Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVT 444
               V+    +   TE ++S L    RY F + A  +   S  G  SE   P+++ 
Sbjct: 166 GAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSEWSEPVSLL 220

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
           +         P  L    + +     +RW PP     +  + Y V+         V+   
Sbjct: 115 HINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVE 174

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVT 783
            +   TE ++S L    RY F + A  +   S  G  SE   P+++ 
Sbjct: 175 ILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSEWSEPVSLL 220

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 16/111 (14%), Positives = 25/111 (22%), Gaps = 2/111 (1%)

Query: 675 NYIVEYFRPPGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP 732
                      PP    L   PD  S       + W+P +          L    +    
Sbjct: 100 CLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGA 159

Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            W           +  + GL     Y  ++            P S  L + 
Sbjct: 160 NWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 2/102 (1%)

Query: 345 PGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
             PP    L   PD  S       + W+P +          L    +     W       
Sbjct: 109 LEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP 168

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               +  + GL     Y  ++            P S  L + 
Sbjct: 169 SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 11/131 (8%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           PP  P  L     L  +    +WEP   +   P    L   R      +   +       
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62

Query: 746 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
           +      +    L         + AEN++G SE    S  L +         P  ++AL 
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSE----SPKLCLDPMDVVKLEPPMLQALD 118

Query: 800 DTTALEDEKPR 810
               +   +P 
Sbjct: 119 IGPDVVSHQPG 129

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 8/147 (5%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PP  P  L     L  +    +WEP   +   P    L   R      +   +       
Sbjct: 4   PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62

Query: 407 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
           +      +    L         + AEN++G SE   L        +  P    + +    
Sbjct: 63  KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQA-LDIGP 121

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWY 487
           D  + +   +  + +            
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQEC 148

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 5e-08
 Identities = 70/514 (13%), Positives = 153/514 (29%), Gaps = 136/514 (26%)

Query: 38  IRSKTIVIQKYFRGY-LLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHAT 96
             S  +  +  F+ + L ++        ++     +Q+    +     +R  +     + 
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDH----SSN 222

Query: 97  LKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRA-NLTMRKQRA 155
           +K R   ++ +   +     Y+  LL+  +           V   + W A NL+ +    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN-----------VQNAKAWNAFNLSCK---- 267

Query: 156 HFLLMKQKASVIQQW-YRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVAL 214
             LL  +   V        T  + L+   +        ++  +Y   +  R Q      L
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVL 323

Query: 215 RTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIEL-LKLKREQERQE 273
            T    +       +IA++ RD  A       ++  +N  K   +IE  L +    E ++
Sbjct: 324 TTNPRRLS------IIAESIRDGLATWD---NWK-HVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 274 KYRHQCA-----VKI-----QSLW--KMYRVRKKFADIIEQKKQAKKTADNQFENQAPLY 321
            +  + +       I       +W   +        + + +    +K      E+   + 
Sbjct: 374 MFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIP 429

Query: 322 VRLEEAITGLNVGTDLYCVIKKPPGPPGKPQL---LPDSPSLDRDVFTIRWEPPEYDGGS 378
                          +Y  +K       +  L   + D  ++ +   +    PP  D   
Sbjct: 430 --------------SIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--- 470

Query: 379 PVLGYLVEHRRTGSPYWVRASPHM--VEDTELMVSGLEPGWRYQFR-----ITAENVVGF 431
               Y   H      +      H+  +E  E M   L       FR     I  ++   +
Sbjct: 471 ---QYFYSH----IGH------HLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDS-TAW 514

Query: 432 SEPGPLSEPLTV--TYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYK 488
           +  G +   L     Y+        +I         L +  ++F  ++E           
Sbjct: 515 NASGSILNTLQQLKFYKP-------YICDNDPKYERLVNAILDFLPKIEEN--------- 558

Query: 489 DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
               +  S+   ++           + ALM E E
Sbjct: 559 ----LICSKYTDLL-----------RIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-05
 Identities = 53/365 (14%), Positives = 95/365 (26%), Gaps = 123/365 (33%)

Query: 837  MLFTFIETISSFRDKYVDNEDDYDIVE------TNEHTGTGAPSDNENESDYF------- 883
              + + + +S F D +VDN D  D+ +      + E       S +              
Sbjct: 14   HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 884  -PEKTIDESVYGYDTIVYGYDSDDLDRHY--PTLDEEEEEEDRESLVKD----------R 930
              E+ + + V     I Y +    +      P++      E R+ L  D          R
Sbjct: 74   KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 931  ESSVK-----------------------GKEE-EAKVIKDDE---------YYENLGDVL 957
                                        GK      V    +         ++ NL +  
Sbjct: 134  LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 958  TKKYSLPVNSDIQIKIDKPDDE-PDYVIKGKYEVDNEMLLKRSKLK-PQY---------- 1005
            + +  L +   +  +ID       D+    K  + +     R  LK   Y          
Sbjct: 194  SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 1006 -SSEMSEA-------------SNITDDEDE--------EDEEDSFDFDE---LF------ 1034
             +++   A               +TD            +    +   DE   L       
Sbjct: 254  QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 1035 --EDNPEEEYD----------EDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQE 1082
              +D P E             E  RD     A   + K++  D+          + SS  
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGL---ATWDNWKHVNCDK------LTTIIESSLN 364

Query: 1083 DLDEA 1087
             L+ A
Sbjct: 365  VLEPA 369

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 53.8 bits (128), Expect = 6e-08
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 28/220 (12%)

Query: 579 TARWLHNGEPLTSGGRYEITHTDRY--LNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636
                   + L +   +    T  Y        +A   D     A  +      V   + 
Sbjct: 29  NIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIED--GKVRVLVS 86

Query: 637 TVTDRPLPPGKAKVVMTL-------GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGK 689
           ++T  PLP  +    + L       G +++++ S   D  G        E          
Sbjct: 87  SLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTS 146

Query: 690 PQLLPDSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P+++ +         +++   T+ W  PE   G  + GY++   + G    V       +
Sbjct: 147 PEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILY--KDGK--KVAEIG--KD 198

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           +T      L     Y F+I A+   G        E LT+ 
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSS---KESLTLR 235

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)

Query: 329 TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR 388
                 T        P       +    +  +++   T+ W  PE   G  + GY++   
Sbjct: 132 IAGTEKTVNIIEGTSPEIVVNPVRDF-KASEINKKNVTVTWTEPETTEG--LEGYILY-- 186

Query: 389 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           + G    V       ++T      L     Y F+I A+   G        E LT+ 
Sbjct: 187 KDGK--KVAEIG--KDETSYTFKKLNRHTIYNFKIAAKYSNGEVSS---KESLTLR 235

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGS 392
            +  +++  P       LL  S +       +RWE P   +   G  VL Y ++++    
Sbjct: 124 SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE 183

Query: 393 PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             W       +  T + V  L+    Y+ R+ +         G  SE L VT
Sbjct: 184 TKW--KMMDPILTTSVPVYSLKVDKEYEVRVRS-KQRNSGNYGEFSEVLYVT 232

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 678 VEYFRPPGPPGKPQ--LLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSP 732
           V+    P PP      LL  S +       +RWE P   +   G  VL Y ++++     
Sbjct: 125 VDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET 184

Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            W       +  T + V  L+    Y+ R+ +         G  SE L VT
Sbjct: 185 KW--KMMDPILTTSVPVYSLKVDKEYEVRVRS-KQRNSGNYGEFSEVLYVT 232

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 11/121 (9%)

Query: 678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA 737
           ++    P PP       +S         ++W  P     +    Y +E R   +      
Sbjct: 232 LQNIVKPLPPVYLTFTRESS----CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTA- 286

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSF 794
               VE+    +       +  F + ++  +  S+ G  SE         +         
Sbjct: 287 ---TVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLR 343

Query: 795 I 795
            
Sbjct: 344 F 344

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 11/116 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP       +S         ++W  P     +    Y +E R   +          V
Sbjct: 237 KPLPPVYLTFTRESS----CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTA----TV 288

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSFI 456
           E+    +       +  F + ++  +  S+ G  SE         +          
Sbjct: 289 ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRF 344

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 30/176 (17%)

Query: 463 TALEDEKVEFTVQV-EGIPTPKVSWYKDG---------------FEIFSSRRQRIVTDND 506
             +  E V   ++   G     ++W  +                  + + ++ + +    
Sbjct: 9   NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEI 565
             +L +    + D G  +   + +    ++   LR L     I++       L   M   
Sbjct: 69  SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQV--TNHSQLFQNMTCE 126

Query: 566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           + L  S+       + RW   G  L+S     ++           D R +   +Y 
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW----------DPRISSEQDYT 172

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 53.4 bits (127), Expect = 3e-07
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P   ++   + +    V T  W  P        L   +E  +  S   VR +    
Sbjct: 386 APHDPTSLKVKDINST----VVTFSWYLPGNFTKIN-LLCQIEICKANSKKEVRNATIRG 440

Query: 404 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
            +     + V  L P   Y FR+   +   F +    S+     
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 53.4 bits (127), Expect = 3e-07
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P   ++   + +    V T  W  P        L   +E  +  S   VR +    
Sbjct: 386 APHDPTSLKVKDINST----VVTFSWYLPGNFTKIN-LLCQIEICKANSKKEVRNATIRG 440

Query: 743 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            +     + V  L P   Y FR+   +   F +    S+     
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 49.2 bits (116), Expect = 6e-06
 Identities = 58/441 (13%), Positives = 115/441 (26%), Gaps = 65/441 (14%)

Query: 361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 420
           +  V+   W  P       V    ++ R          S H +E T + +  L PG  ++
Sbjct: 16  NMRVWDCTWPAPLGVSPGTVKDICIKDRF--------HSCHPLETTNVKIPALSPG-DHE 66

Query: 421 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP 480
             I   N                  ++  +  P     L  +       +       G  
Sbjct: 67  VTINYLNGFQSKF---------TLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSA 117

Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
            P  S      ++  + R   V    ++T++  +  +             A HS+   R 
Sbjct: 118 LPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSV-SIRW 176

Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
            +++P      +  +   L  +  I   + ++     P  + +  G  +T          
Sbjct: 177 HIDSPHFSGYKEWSDWSPLKNISWIRNTETNVF----PQDKVVLAGSNMTICCMSPTKVL 232

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
              +   +             H +N    + +   +                        
Sbjct: 233 SGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNII----------------------- 269

Query: 661 SWSEPEDDGGCKIGNYIVEYFRPPG-PPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GS 717
                         + +       G PP  PQ L    + D       W P    G  G 
Sbjct: 270 ----------FITDDDVYGTVVFAGYPPDVPQKL-SCETHDLKEIICSWNPGRITGLVGP 318

Query: 718 PVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 776
               Y +       S  + R      E   L V        + F +T  N +G ++    
Sbjct: 319 RNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ---- 374

Query: 777 SEPLTVTYQRSPAAAPSFIRA 797
           S  +    +R     P+ ++ 
Sbjct: 375 SAVVINVTERVAPHDPTSLKV 395

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 47.6 bits (112), Expect = 2e-05
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 8/131 (6%)

Query: 331 LNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHR 388
                D+Y  +     PP  PQ L    + D       W P    G  G     Y +   
Sbjct: 270 FITDDDVYGTVVFAGYPPDVPQKL-SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFES 328

Query: 389 -RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
               S  + R      E   L V        + F +T  N +G ++    S  +    +R
Sbjct: 329 ISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ----SAVVINVTER 384

Query: 448 SPAAAPSFIRA 458
                P+ ++ 
Sbjct: 385 VAPHDPTSLKV 395

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSP----YWVRASPHMVEDTELMVSGLEPGWRYQF 421
            + W          + GY V +R+T        W      +  +   ++  L+ G  Y+ 
Sbjct: 33  QVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90

Query: 422 RITAENVVGFSEPGPLSEPLTVT 444
           ++           G  SE  TV 
Sbjct: 91  KVRPYFNEF---QGMDSESKTVR 110

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSP----YWVRASPHMVEDTELMVSGLEPGWRYQF 760
            + W          + GY V +R+T        W      +  +   ++  L+ G  Y+ 
Sbjct: 33  QVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90

Query: 761 RITAENVVGFSEPGPLSEPLTVT 783
           ++           G  SE  TV 
Sbjct: 91  KVRPYFNEF---QGMDSESKTVR 110

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 52.7 bits (125), Expect = 5e-07
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 355 PDSPSL----DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 410
              PSL    D D +++RWE  +         + +++R+  + +    +  +     + +
Sbjct: 322 MAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381

Query: 411 SGLEPGWRYQFRITAENVVGFSE--PGPLSEPLTVT 444
             LEP  RY  R+                SE  +  
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 52.7 bits (125), Expect = 5e-07
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 694 PDSPSL----DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
              PSL    D D +++RWE  +         + +++R+  + +    +  +     + +
Sbjct: 322 MAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381

Query: 750 SGLEPGWRYQFRITAENVVGFSE--PGPLSEPLTVT 783
             LEP  RY  R+                SE  +  
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 13/153 (8%)

Query: 657 SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG 716
           +    +S   D          +     P  P   Q+     S D+D F + W        
Sbjct: 82  TDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQI-----STDQDHFLLTWSVALGSPQ 136

Query: 717 SP-----VLGYLVEHRRTGSPYWVRASPHMVEDTE--LMVSGLEPGWRYQFRITAENVVG 769
           S       L + V ++R     W  A+  +   ++  L    L P   Y  R+      G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDS-WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPG 195

Query: 770 FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
               G  S+        S     +  + L    
Sbjct: 196 SRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFF 228

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 49.6 bits (117), Expect = 4e-06
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP-----VLGYLVEHRRTGSPY 394
           V       P +P+ L    S D+D F + W        S       L + V ++R     
Sbjct: 101 VTLTQHVQPPEPRDL--QISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS- 157

Query: 395 WVRASPHMVEDTE--LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
           W  A+  +   ++  L    L P   Y  R+      G    G  S+        S    
Sbjct: 158 WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD 217

Query: 453 PSFIRALHDTT 463
            +  + L    
Sbjct: 218 EAQPQNLECFF 228

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 421
             ++W PPE   G  V  Y V++   G   W+  S    +  T   L     +   +Y  
Sbjct: 24  NVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYA 82

Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
           R+ A      S+           +  +    P          AL  ++   +V +     
Sbjct: 83  RVRAIWGTKCSKWAESGRF--YPFLETQIGPPEV--------ALTTDEKSISVVLTAPEK 132

Query: 482 PKVSW 486
            K + 
Sbjct: 133 WKRNP 137

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 50.2 bits (119), Expect = 9e-07
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 760
             ++W PPE   G  V  Y V++   G   W+  S    +  T   L     +   +Y  
Sbjct: 24  NVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYA 82

Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
           R+ A      S+           +  +    P  
Sbjct: 83  RVRAIWGTKCSKWAESGRF--YPFLETQIGPPEV 114

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP------------VLGYLVEHRR 389
            +    P +  L  D  S+     ++    PE    +P             L Y V    
Sbjct: 105 LETQIGPPEVALTTDEKSI-----SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLN 159

Query: 390 TGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
           T S          V +  L+++ LEP   Y   + +  V G       SE       +  
Sbjct: 160 TKSNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESF-VPGPPRRAQPSEKQCARTLKDQ 215

Query: 450 AAAP 453
           ++  
Sbjct: 216 SSIE 219

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 21/122 (17%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP------------VLGYLVEHRRTG 730
               P +  L  D  S+     ++    PE    +P             L Y V    T 
Sbjct: 107 TQIGPPEVALTTDEKSI-----SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTK 161

Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 790
           S          V +  L+++ LEP   Y   + +  V G       SE       +  ++
Sbjct: 162 SNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESF-VPGPPRRAQPSEKQCARTLKDQSS 217

Query: 791 AP 792
             
Sbjct: 218 IE 219

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 452 APSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-- 508
                  L    T +E      T +V+      + W     +      ++ + DN I   
Sbjct: 5   GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV 64

Query: 509 -------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
                  ++ +   +L DEG+  C+       +   A L +   P
Sbjct: 65  RASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSK-AYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITHTD-RYLNLRISDARR 613
           G    L   +      + +W +        + +      R E+       L++ +SD   
Sbjct: 21  GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSL 80

Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           +D G+Y    + ++    +   +TV   P
Sbjct: 81  SDEGQYTCS-LFTMPVKTSKAYLTVLGVP 108

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVED 405
            P  P  +    +++  +  I WE P +   +  L + + +  +G    W     +  + 
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN--LQFQIRYGLSGKEVQWKMYEVYDAKS 166

Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             + +   +    Y  ++  + + G       S P    
Sbjct: 167 KSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVED 744
            P  P  +    +++  +  I WE P +   +  L + + +  +G    W     +  + 
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN--LQFQIRYGLSGKEVQWKMYEVYDAKS 166

Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             + +   +    Y  ++  + + G       S P    
Sbjct: 167 KSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P    L   S S       + W        +  L +LV++R      W   S     
Sbjct: 99  PWAPENLTLHKLSES----QLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DY 149

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
             +  +  ++   RY FR+ +            SE
Sbjct: 150 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P    L   S S       + W        +  L +LV++R      W   S     
Sbjct: 99  PWAPENLTLHKLSES----QLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DY 149

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
             +  +  ++   RY FR+ +            SE
Sbjct: 150 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P    L   S S       + W        +  L +LV++R      W   S     
Sbjct: 137 PWAPENLTLHKLSES----QLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DY 187

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
             +  +  ++   RY FR+ +            SE
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P    L   S S       + W        +  L +LV++R      W   S     
Sbjct: 137 PWAPENLTLHKLSES----QLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DY 187

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
             +  +  ++   RY FR+ +            SE
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 38/327 (11%), Positives = 67/327 (20%), Gaps = 39/327 (11%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
           ++  L        E V  T   +      ++W  D                   TL I  
Sbjct: 9   YVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSG---------KTLTIQV 57

Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
               D G+  C            + L L                     +      +   
Sbjct: 58  KEFGDAGQYTCHKGGEVLSH---SLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNY 114

Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
               T  WL                TD   +++ S      +G        S        
Sbjct: 115 SGRFTCWWLTT------------ISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDN 162

Query: 635 LVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLP 694
                        A       +S+ +                   + R    P  P+ L 
Sbjct: 163 KEYEYSVECQEDSA--CPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQ 220

Query: 695 DSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
             P  +     + WE P           L + V+ +                 T+   + 
Sbjct: 221 LKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREK-----KDRVFTDKTSAT 275

Query: 752 LEPGWRYQFRITAENVVGFSEPGPLSE 778
           +         + A++          SE
Sbjct: 276 VICRKNASISVRAQDRYYS---SSWSE 299

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 760
             ++W+P           Y V+++  G   W         ++    L     +    Y  
Sbjct: 23  NILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYG 81

Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKPRNTNNCDYES 819
           R+ A +   +SE           +  +    P   I  ++ +  +    P        E 
Sbjct: 82  RVRAASAGSYSEWSMTPRF--TPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEK 139

Query: 820 KRTFQ 824
             + +
Sbjct: 140 NVSIE 144

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 421
             ++W+P           Y V+++  G   W         ++    L     +    Y  
Sbjct: 23  NILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYG 81

Query: 422 RITAENVVGFSEPGPLSEPLTV 443
           R+ A +   +SE          
Sbjct: 82  RVRAASAGSYSEWSMTPRFTPW 103

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 16/131 (12%), Positives = 23/131 (17%), Gaps = 23/131 (17%)

Query: 668 DGGCKIGNYIVEYFRP----PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---- 719
             G      +   F P       P    +   + SL      +    P            
Sbjct: 87  SAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL-----LVILHAPNLPYRYQKEKNV 141

Query: 720 -------LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 772
                  L Y V           +          + +  L P   Y              
Sbjct: 142 SIEDYYELLYRVFIINNSLEKEQKVYE--GAHRAVEIEALTPHSSYCVVAEIYQ-PMLDR 198

Query: 773 PGPLSEPLTVT 783
               SE   V 
Sbjct: 199 RSQRSEERCVE 209

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 14/112 (12%), Positives = 20/112 (17%), Gaps = 20/112 (17%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-----------LGYLVEHRRTGS 392
              PP    +   + SL      +    P                   L Y V       
Sbjct: 107 KIDPPV-MNITQVNGSL-----LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSL 160

Query: 393 PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               +          + +  L P   Y                  SE   V 
Sbjct: 161 EKEQKVYE--GAHRAVEIEALTPHSSYCVVAEIYQ-PMLDRRSQRSEERCVE 209

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P PP      P  PS  R +  + W+ P    D  S  L + + +R      W       
Sbjct: 8   PDPPENVVARP-VPSNPRRL-EVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-- 63

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              T   ++    G  Y  ++ A            S     T
Sbjct: 64  SNGTAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHAT 104

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P PP      P  PS  R +  + W+ P    D  S  L + + +R      W       
Sbjct: 8   PDPPENVVARP-VPSNPRRL-EVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-- 63

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              T   ++    G  Y  ++ A            S     T
Sbjct: 64  SNGTAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHAT 104

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP       +   +     +I+WE P          Y V+   T + Y         
Sbjct: 220 QINPPLNVTAEIEGTRM-----SIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ----IEK 270

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQR 447
             T   +S ++   +Y  ++ A       E G  SE   P+ V + R
Sbjct: 271 LMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYVGFSR 317

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP       +   +     +I+WE P          Y V+   T + Y         
Sbjct: 220 QINPPLNVTAEIEGTRM-----SIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ----IEK 270

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQR 786
             T   +S ++   +Y  ++ A       E G  SE   P+ V + R
Sbjct: 271 LMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYVGFSR 317

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKD---GFEIFSSRRQRIVTDND 506
             F++     +    +      +V G      P + W+K         S  R      ++
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 507 IST------LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
            ++      L I +  L D G  +     +         + +EAP
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)

Query: 478 GIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
                 + ++ +G +    S  + R+  D     L I+  +  D G+      +      
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQ 95

Query: 536 TKARLRLEAP---PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG 592
            K  + +      P I                   L   +        +     E L S 
Sbjct: 96  WKITMEVYEMVSKPMIYWECSN-----------ATLTCEVLEGTDVELKLYQGKEHLRSL 144

Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
                          +S      R  ++   VN + ++    +V  
Sbjct: 145 R-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 15/108 (13%)

Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTP--KVSWYKD-----------GFEIFSSRRQRIV 502
           I    + +A +   +     +        +V+W +            G+ I  S + R+ 
Sbjct: 7   IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66

Query: 503 TDNDISTLIIHQAALMDEGEIKCT-ATNRAGHSITKARLRLEAPPTIR 549
                  L +    + D GE  C   T   G    +  L +       
Sbjct: 67  PGPG-LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 45/193 (23%)

Query: 466 EDEKVEFTVQVEGI---------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA 516
           + E +E+ V + G              + W K+G         + +       L++   +
Sbjct: 2   DAENIEYKVSISGTSVELTCPLDSDENLKWEKNG---------QELPQKHDKHLVLQDFS 52

Query: 517 LM-DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM 575
            + D G   C       ++    + R+ +    +     +D    +  +    + + A  
Sbjct: 53  EVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKN 112

Query: 576 PP-------------------PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
                                 T +WL +G  ++     + T         + +  +  R
Sbjct: 113 LVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPR 165

Query: 617 GEYQAHGVNSLGE 629
           G YQ  G      
Sbjct: 166 GTYQCQGAKETSN 178

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 11/115 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-----GGSPVLGYLVEHRRTGSPYWVRA 398
           P GPP  PQ +     +      + W PP         G+ V GY V  +  G       
Sbjct: 14  PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK--GQRVAEVI 71

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
            P   + T + +  L         +   +  G S     S    V  +      P
Sbjct: 72  FPTA-DSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTP 122

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 11/115 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-----GGSPVLGYLVEHRRTGSPYWVRA 737
           P GPP  PQ +     +      + W PP         G+ V GY V  +  G       
Sbjct: 14  PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK--GQRVAEVI 71

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
            P   + T + +  L         +   +  G S     S    V  +      P
Sbjct: 72  FPTA-DSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTP 122

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 11/104 (10%)

Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
                      ++  D   L      I  E        P   +LV + R           
Sbjct: 105 RQSTILTRPGMEITKDGFHL-----VIELEDLG-----PQFEFLVAYWRREPGAEEHVKM 154

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                  + +  +EPG  Y  +     V         S+   V 
Sbjct: 155 VRSGGIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVE 197

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 11/100 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
                  ++  D   L      I  E        P   +LV + R               
Sbjct: 109 ILTRPGMEITKDGFHL-----VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSG 158

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              + +  +EPG  Y  +     V         S+   V 
Sbjct: 159 GIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVE 197

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 320 LYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 379
           L +R E+  T      D +   +K    P +  L  +  ++   +     +   +     
Sbjct: 76  LRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGL 135

Query: 380 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
              Y +   +  S    R        +   +  L P   Y  ++ A  +    + G  S 
Sbjct: 136 SFTYSLVIWKNSSGVEER---IENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSP 191

Query: 440 PLTVTYQRSPAAAPSF 455
              +         P  
Sbjct: 192 VHCIKTTVENELPPPE 207

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPY 394
              ++    PP   ++   + +     + ++W+    +    V     +L  +       
Sbjct: 196 KTTVENELPPPENIEVSVQNQN-----YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 250

Query: 395 WVRASP-HMVEDTELMVS-GLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
           W +      V+ T+ +    +     Y  R+ A +    S     SE +  
Sbjct: 251 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW---SEEIKF 298

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 704 FTIRWEPPEYDGGSPV---LGYLVEHRRTGSPYWVRASP-HMVEDTELMVS-GLEPGWRY 758
           + ++W+    +    V     +L  +       W +      V+ T+ +    +     Y
Sbjct: 218 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 277

Query: 759 QFRITAENVVGFSEPGPLSEPLTV 782
             R+ A +    S     SE +  
Sbjct: 278 LLRVQASDGNNTSFW---SEEIKF 298

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 4/115 (3%)

Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
           + +    P +  L  +  ++   +     +   +        Y +   +  S    R   
Sbjct: 97  FRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER--- 153

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
                +   +  L P   Y  ++ A  +    + G  S    +         P  
Sbjct: 154 IENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSPVHCIKTTVENELPPPE 207

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 421
           F +RW   +   G+  + +  ++++TG   W++ S                L      + 
Sbjct: 19  FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 76

Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
           RI AE     S      E  + T  R     P  +    +  A+        + +     
Sbjct: 77  RIRAEK-ENTSSW---YEVDSFTPFRKAQIGPPEVHLEAEDKAI-------VIHISPGTK 125

Query: 482 PKVSWYKDG 490
             V W  DG
Sbjct: 126 DSVMWALDG 134

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITH-TDRYLNLRISDARR 613
           G  + LK  +      + +W +          +      R ++   T   L++ IS+   
Sbjct: 53  GGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVAL 112

Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           AD GEY    + ++    A  LVTV   P  P
Sbjct: 113 ADEGEYTCS-IFTMPVRTAKSLVTVLGIPQKP 143

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
                   D T +    V    QV+      + W     +      +R + DN I     
Sbjct: 39  DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98

Query: 509 -----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
                ++ I   AL DEGE  C+       +  K+ + +   P
Sbjct: 99  TPHELSISISNVALADEGEYTCSIFTMPVRT-AKSLVTVLGIP 140

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 23/150 (15%)

Query: 463 TALEDEKVE----FTVQVEGIPTPKVSWYKDGFEIFSSR------------RQRIVTDND 506
           T    E         V VE +   ++ W K+   + +              R      N+
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAG---HSITKARLRLEAPPTIRLPKQYEDGLLFEMG 563
           +S ++I      DEG  +C               A + L        P   +  +     
Sbjct: 65  LS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI--PTS 121

Query: 564 EIIKLK-VSMAGMPPPTARWLHNGEPLTSG 592
            I ++   +  G P P   WL NGE L + 
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNAI 151

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV----EDTELMVSGLEPGWRYQ 420
             + WE P     S +L + V    T  P+        +         ++  L  G  Y 
Sbjct: 25  LRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYS 84

Query: 421 FRITAENVVGFSEP 434
             +        ++ 
Sbjct: 85  LTLYGLRGPHKADS 98

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV----EDTELMVSGLEPGWRYQ 759
             + WE P     S +L + V    T  P+        +         ++  L  G  Y 
Sbjct: 25  LRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYS 84

Query: 760 FRITAENVVGFSEP 773
             +        ++ 
Sbjct: 85  LTLYGLRGPHKADS 98

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
             ++WE P +  G     +  ++                  TE   S L     +  R+ 
Sbjct: 17  NILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQ---TTLTECDFSSLSKYGDHTLRVR 71

Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKPRNTNNCDYESKRT 822
           AE     S+     +        +    P   +  L D   +    P+  N  +  + + 
Sbjct: 72  AEFADEHSDW---VQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKN 128

Query: 823 FQST 826
             ++
Sbjct: 129 VYNS 132

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 363 DVFTIRWEPPEYDGGS---------PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL 413
           D   +R+  P+ +                Y V++ + G+    + +    +    ++  L
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT---PQYDFEVLRNL 162

Query: 414 EPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           EP   Y  ++    +   ++ G  SEP+   
Sbjct: 163 EPWTTYCVQVRGF-LPDRNKAGEWSEPVCEQ 192

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 702 DVFTIRWEPPEYDGGS---------PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL 752
           D   +R+  P+ +                Y V++ + G+    + +    +    ++  L
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT---PQYDFEVLRNL 162

Query: 753 EPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           EP   Y  ++    +   ++ G  SEP+   
Sbjct: 163 EPWTTYCVQVRGF-LPDRNKAGEWSEPVCEQ 192

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
             ++WE P +  G     +  ++                  TE   S L     +  R+ 
Sbjct: 17  NILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQ---TTLTECDFSSLSKYGDHTLRVR 71

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSP 449
           AE     S+   ++          P
Sbjct: 72  AEFADEHSDWVQITFSPVDDTIIGP 96

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 33/228 (14%), Positives = 56/228 (24%), Gaps = 35/228 (15%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPK-VSWYKD--------------------GFEIFSSRRQ 499
               +  + V       G      + W+                           +  R 
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68

Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPT-IRLPKQYEDG 557
                +    L++ +A + DE +  C     A  +    ARL + A P    +       
Sbjct: 69  PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128

Query: 558 LLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
            + E          S  G P P   W  NG+ L                   S   R   
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY------MTSRTVREAS 182

Query: 617 GEYQAHGVNSL---GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
           G         L    +D  +         LP G+   + +   +  L+
Sbjct: 183 GLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDS--PTFHLT 228

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 34/232 (14%), Positives = 59/232 (25%), Gaps = 39/232 (16%)

Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
            GK  +L  +P+   D + + W   +  G  P L                     + DT 
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSE--------LQVTMHDTR 65

Query: 408 LMVSGLEPGWRYQFRITAENV-----------VGFSEPGPLSEPLTVTYQRSPAAAPSFI 456
                 +   + +  +                V     G       +     P A     
Sbjct: 66  GRSPPYQLDSQGRLVLA--EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123

Query: 457 RALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--------- 506
                +   +  +   T     G P PK++WY++G  +                      
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183

Query: 507 ----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
                STL +       +    C A     +S+ + R      PT  L   Y
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAH----YSLPEGRHGRLDSPTFHLTLHY 231

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 365 FTIRWEPP----EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPG 416
           + I W        +      L Y +++R  G P+ V     ++        L+       
Sbjct: 115 YQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKD 174

Query: 417 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             Y+ ++ A  + G S  G  SE       ++ +    
Sbjct: 175 SSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 704 FTIRWEPP----EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPG 755
           + I W        +      L Y +++R  G P+ V     ++        L+       
Sbjct: 115 YQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKD 174

Query: 756 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             Y+ ++ A  + G S  G  SE       ++ +    
Sbjct: 175 SSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPHMVE 404
            P  P  L        +   + W             Y V+ R T  G PY   A+   + 
Sbjct: 4   APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVK-RSTKSGGPYTTIATN--IT 55

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
            T    +G+  G +Y + ++A +    +     S    + Y
Sbjct: 56  STNYTDTGVATGTKYYYVVSAVSNGVETLN---SAEAILQY 93

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPHMVE 743
            P  P  L        +   + W             Y V+ R T  G PY   A+   + 
Sbjct: 4   APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVK-RSTKSGGPYTTIATN--IT 55

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
            T    +G+  G +Y + ++A +    +     S    + Y
Sbjct: 56  STNYTDTGVATGTKYYYVVSAVSNGVETLN---SAEAILQY 93

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           P  P  L        + F + +           VL + V +R+                 
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            L+   L+P   Y+ ++ +     F   G  SE     Y R+P    S
Sbjct: 173 TLLQRKLQPAAMYEIKVRSIPDHYFK--GFWSEWSPSYYFRTPEINNS 218

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           P  P  L        + F + +           VL + V +R+                 
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            L+   L+P   Y+ ++ +     F   G  SE     Y R+P    S
Sbjct: 173 TLLQRKLQPAAMYEIKVRSIPDHYFK--GFWSEWSPSYYFRTPEINNS 218

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 12/122 (9%)

Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPY 394
             +  ++     P   Q++            I WE  +        L +       G   
Sbjct: 99  KPFENLR--LMAPISLQVVHVETHR----CNISWEISQASHYFERHLEFEARTLSPGHT- 151

Query: 395 WVRASPHMVED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
           W  A    ++     + +  L P  +Y+F++  + + G       S        R+  AA
Sbjct: 152 WEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF--TTWSPWSQPLAFRTKPAA 209

Query: 453 PS 454
             
Sbjct: 210 LG 211

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMV 742
              P   Q++            I WE  +        L +       G   W  A    +
Sbjct: 106 LMAPISLQVVHVETHR----CNISWEISQASHYFERHLEFEARTLSPGHT-WEEAPLLTL 160

Query: 743 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
           +     + +  L P  +Y+F++  + + G       S        R+  AA  
Sbjct: 161 KQKQEWICLETLTPDTQYEFQVRVKPLQGEF--TTWSPWSQPLAFRTKPAALG 211

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P        + S      T+ W     + G  V GY V      +          V
Sbjct: 3   APTAPTNLASTAQTTS----SITLSWTASTDNVG--VTGYDVY--NGTALATT------V 48

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             T   +SGL     Y F + A++  G       S  ++V 
Sbjct: 49  TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P        + S      T+ W     + G  V GY V      +          V
Sbjct: 3   APTAPTNLASTAQTTS----SITLSWTASTDNVG--VTGYDVY--NGTALATT------V 48

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             T   +SGL     Y F + A++  G       S  ++V 
Sbjct: 49  TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 7/93 (7%)

Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
               W PPE    +  L Y               +         +   L      Q    
Sbjct: 20  VIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------RRSIEVPLNERICLQVGSQ 73

Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
                   +P  L E      +  P +A + ++
Sbjct: 74  CSTNES-EKPSILVEKCISPPEGDPESAVTELQ 105

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 7/93 (7%)

Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
               W PPE    +  L Y               +         +   L      Q    
Sbjct: 20  VIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------RRSIEVPLNERICLQVGSQ 73

Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 796
                   +P  L E      +  P +A + ++
Sbjct: 74  CSTNES-EKPSILVEKCISPPEGDPESAVTELQ 105

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 19/135 (14%)

Query: 657 SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG 716
           SV +   +             +     P PP    L   +  L      ++WE P  +  
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDL-----YVQWENP-QNFI 226

Query: 717 SPVLGYLVEHRRTGSPYW------------VRASPHMVEDTELMVSGLEPGWRYQFRITA 764
           S  L Y VE   + +                    ++   +  MV G+ P      RI  
Sbjct: 227 SRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286

Query: 765 -ENVVGFSEPGPLSE 778
             N + + +    S 
Sbjct: 287 KTNKLCYEDDKLWSN 301

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 16/134 (11%)

Query: 319 PLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS 378
              V++        +      V       P  P +   + S   D   ++WE P  +  S
Sbjct: 171 QHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIK--NLSFHNDDLYVQWENP-QNFIS 227

Query: 379 PVLGYLVEHRRTGSPYW------------VRASPHMVEDTELMVSGLEPGWRYQFRITA- 425
             L Y VE   + +                    ++   +  MV G+ P      RI   
Sbjct: 228 RCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK 287

Query: 426 ENVVGFSEPGPLSE 439
            N + + +    S 
Sbjct: 288 TNKLCYEDDKLWSN 301

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 17/178 (9%)

Query: 480 PTPKVSWYKDGFEIF----SSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNR 530
               V+ Y DG E+     +  R R     D      + L IH     D G+  C   + 
Sbjct: 46  LRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDG 105

Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWL-HNGEP 588
             +   KA + L+             G        I L+  S    P P  +W  + GE 
Sbjct: 106 DFYE--KALVELKVAALGSDLHVDVKG---YKDGGIHLECRSTGWYPQPQIQWSNNKGEN 160

Query: 589 LTSGGRYEITHTDRYLNLRIS-DARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           + +     +        +  S   R +          +SL     +  +++ D     
Sbjct: 161 IPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFRS 218

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 13/126 (10%)

Query: 330 GLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVE 386
                      +K  P  PG   +  +      D   + W  P Y   + +   L Y V 
Sbjct: 85  LWKGSFKPSEHVK--PRAPGNLTVHTNVS----DTLLLTWSNP-YPPDNYLYNHLTYAVN 137

Query: 387 HRRTGSPYWVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT-V 443
                 P   R     ++     +  S L+ G  Y+ R+ A      +     S      
Sbjct: 138 IWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 197

Query: 444 TYQRSP 449
              R P
Sbjct: 198 NSYREP 203

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPYWVRA--S 738
           P  PG   +  +      D   + W  P Y   + +   L Y V       P   R    
Sbjct: 98  PRAPGNLTVHTNVS----DTLLLTWSNP-YPPDNYLYNHLTYAVNIWSENDPADFRIYNV 152

Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT-VTYQRSP 788
            ++     +  S L+ G  Y+ R+ A      +     S         R P
Sbjct: 153 TYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 29  RRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQ 88
            RDER    +     + Q + RGYL +RK  ++    +     IQ   R         + 
Sbjct: 773 MRDER----LSKIISMFQAHIRGYL-IRKAYKKLQDQRIGLSVIQRNIR----KWLVLRN 823

Query: 89  YLALK 93
           +   K
Sbjct: 824 WQWWK 828

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1101
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.98
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.94
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.94
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.94
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.94
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.94
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.93
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.93
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.93
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.92
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.92
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.92
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.92
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.91
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.91
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.91
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.9
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.9
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.9
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.9
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.9
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.9
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.89
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.89
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.89
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.88
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.88
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.88
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.88
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.87
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.87
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.87
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.87
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.87
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.87
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.86
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.86
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.85
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.85
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.85
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.85
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.84
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.84
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.84
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.84
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.84
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.84
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.84
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.83
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.83
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.83
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.83
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.83
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.82
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.82
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.82
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.82
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.82
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.82
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.82
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.82
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.82
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.82
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.82
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.82
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.82
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.81
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.81
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.81
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.81
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.8
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.8
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.8
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.79
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.79
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.79
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.78
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.78
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.78
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.78
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.78
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.78
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.77
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.77
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.77
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.77
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.76
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.76
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.76
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.76
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.75
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.75
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.75
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.75
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.75
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.75
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.75
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.75
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.74
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.74
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.74
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.74
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.74
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.74
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.74
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.74
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.73
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.73
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.73
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.72
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.72
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.72
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.71
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.71
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.71
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.71
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.71
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.7
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.7
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.7
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.7
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.69
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.69
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.68
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.68
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.68
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.68
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.68
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.68
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.68
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.67
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.67
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.67
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.66
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.66
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.66
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.66
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.66
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.66
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.66
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.66
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.66
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.66
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.64
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.64
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.64
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.64
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.64
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.64
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.64
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.63
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.63
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.63
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.63
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.62
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.62
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.62
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.62
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.62
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.62
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.62
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.62
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.61
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.61
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.61
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.61
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.61
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.6
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.6
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.6
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.6
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.6
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.59
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.59
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.59
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.59
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.58
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.58
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.58
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.58
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.57
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.57
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.56
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.56
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.55
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.55
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.55
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.55
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.54
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.54
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.54
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.54
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.54
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.54
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.53
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.53
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.52
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.52
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.52
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.51
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.51
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.5
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.5
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.5
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.5
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.5
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.49
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.49
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.49
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.49
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.49
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.49
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.49
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.48
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.48
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.48
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.48
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.48
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.48
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.48
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.48
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.48
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.47
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.47
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.47
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.47
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.46
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.46
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.46
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.45
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.45
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.45
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.45
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.45
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.45
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.45
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.44
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.44
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.44
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.44
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.44
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.44
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.43
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.43
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.43
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.43
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.43
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.42
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.42
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.42
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.42
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.42
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.42
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.41
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.41
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.41
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.41
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.41
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.41
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.41
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.4
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.4
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.4
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.39
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.39
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.39
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.38
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.38
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.38
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.37
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.36
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.36
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.36
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.36
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.36
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.36
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.36
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.35
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.35
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.35
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.35
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.35
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.34
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.34
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.34
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.34
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.34
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.34
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.34
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.33
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.33
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.33
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.33
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.33
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.33
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.33
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.33
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.32
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.32
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.32
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.32
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.32
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.32
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.32
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.32
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.31
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.31
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.31
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.31
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.31
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.31
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.31
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.31
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.31
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.3
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.3
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.3
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.29
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.29
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.29
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.29
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.28
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.28
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.28
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.28
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.28
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.28
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.28
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.28
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.28
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.28
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.27
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.27
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.27
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.26
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.26
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.26
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.25
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.25
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.25
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.24
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.24
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.24
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.24
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.24
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.23
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.23
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.23
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.23
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.23
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.23
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.23
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.22
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.22
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.22
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.22
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.22
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.22
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.21
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.21
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.21
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.21
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.21
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.2
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.2
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.2
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.2
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.2
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.2
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.2
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.2
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.19
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.19
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.19
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.19
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.19
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.18
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.18
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.18
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.18
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.18
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.18
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.18
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.18
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.18
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.17
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.17
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.17
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.17
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.17
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.17
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.17
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.17
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.16
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.16
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.16
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.15
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.15
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.15
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.15
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.15
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.14
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.14
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.14
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.14
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.14
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.14
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.13
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.13
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.13
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.13
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.12
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.12
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.12
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.12
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.11
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.11
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.1
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.1
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.1
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.09
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.09
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.09
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.08
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.08
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.08
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.07
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.07
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.07
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.07
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.06
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.06
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.05
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.05
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.05
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.05
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.04
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.04
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	99.04
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.04
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.03
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.03
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.03
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.03
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.02
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.02
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.02
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.02
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.02
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.02
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.02
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.01
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.01
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.01
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.01
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.0
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.0
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.0
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.0
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.0
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.0
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.99
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.99
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.99
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	98.99
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.99
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.99

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=3e-35  Score=340.12  Aligned_cols=361  Identities=22%  Similarity=0.365  Sum_probs=281.8

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEeec-----CCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIFS-----SRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~~-----~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +|.+.. +.+..+.+|++++|.|.+.|.|.+.|+|+++  |..+..     ..++.+....+...|.|.++...|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            355554 6677888899999999999999999999999  888764     45666665566779999999999999999


Q ss_pred             EEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecc
Q psy8139         525 CTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDR  602 (1101)
Q Consensus       525 C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~  602 (1101)
                      |.|.|..|.....+.|.|..+|.+..++.   ...+..|+.+.|.|.+.|.|.+.+.|+++|..+....  ++.+...+.
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~P~~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~  156 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYAPKFISNQT---IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR  156 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEEECCSCC---EEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSS
T ss_pred             EEEEeCCCCcceEEEEEEEeCCEEecCcc---eEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCC
Confidence            99999999988889999999888765432   2357789999999999999999999999999987543  566666666


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEc
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR  682 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~  682 (1101)
                      ...|.|.++...|.|.|+|.|.|..|.......+.+..+|.+|.++.+.....+++.|+|.+|..               
T Consensus       157 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~---------------  221 (389)
T 2jll_A          157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDS---------------  221 (389)
T ss_dssp             CEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSC---------------
T ss_pred             EEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCC---------------
Confidence            78999999999999999999999999988888888888999998888877777777777776543               


Q ss_pred             CCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEE
Q psy8139         683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                                                     ++|.++.+|.|+|+..+...|...... .....++|.+|.|++.|.|+|
T Consensus       222 -------------------------------~~g~pi~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~y~~~v  269 (389)
T 2jll_A          222 -------------------------------HGGVPIHHYQVDVKEVASEIWKIVRSH-GVQTMVVLNNLEPNTTYEIRV  269 (389)
T ss_dssp             -------------------------------CTTSCEEEEEEEEEETTCSCCEEEECS-TTCSEEEECSCCTTCEEEEEE
T ss_pred             -------------------------------CCCcceEEEEEEEEECCCcccEEeecc-CCcceEEECCccCCCEEEEEE
Confidence                                           344567788888888877788765442 456889999999999999999


Q ss_pred             EEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhce
Q psy8139         763 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTF  841 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  841 (1101)
                      .|.|..|.|.+|....+.+..  ..|+.||.... ...++++.+.|.|+.            ..++++.           
T Consensus       270 ~A~N~~G~~~~s~~~~~~t~~--~~~p~~p~~~~~~~~~~~v~l~W~~p~------------~~~~~i~-----------  324 (389)
T 2jll_A          270 AAVNGKGQGDYSKIEIFQTLP--VREPSPPSIHGQPSSGKSFKLSITKQD------------DGGAPIL-----------  324 (389)
T ss_dssp             EEEESSCBCCCCCCEEEECCC--CCCCCCCCEEEEEETTTEEEEEECCCC------------CCSSCCC-----------
T ss_pred             EEEcCCccCCCCcceEEEecC--CCCCCCCccccccCcCCEEEEEEECCC------------CCCCccc-----------
Confidence            999999998887665444333  45777776554 446677788897743            3456677           


Q ss_pred             eeEEeeeeccCCCCCCc-eeeeeccccccCCCCCCCCCccCcccce--eeccccccc
Q psy8139         842 IETISSFRDKYVDNEDD-YDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       842 ~~Y~v~~r~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                       .|.|.|+..+ ...|. ...+.     +......+.+|.+++.|+  |+|.|..|.
T Consensus       325 -~Y~v~~~~~~-~~~~~~~~~~~-----~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~  374 (389)
T 2jll_A          325 -EYIVKYRSKD-KEDQWLEKKVQ-----GNKDHIILEHLQWTMGYEVQITAANRLGY  374 (389)
T ss_dssp             -EEEEEEEC------CCBCCEEC-----TTCCEEEECSCCTTCEEEEEEEEEC-CCB
T ss_pred             -EEEEEEEeCC-CCcceeEeecc-----CCcceEEeCCcCCCCEEEEEEEEEcCCcC
Confidence             8999998854 33454 22231     122223344555999999  999999998

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=350.27  Aligned_cols=439  Identities=13%  Similarity=0.060  Sum_probs=275.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCC-CEEEEEEEEeCCCceEEE-EEEe---
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGHSITK-ARLR---  541 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d-~g~Y~C~a~n~~g~~~~s-~~l~---  541 (1101)
                      +.++.|.|.+.|.|.|.+.|.++|..+....         ...+.|..+...+ .+.|.|.+.|..|..... ..+.   
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~---------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~  161 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN---------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP  161 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCE---------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCcee---------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecc
Confidence            4578999999999999999999987653221         1145555442333 477888877777754432 1121   


Q ss_pred             eccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeE-EE--ECCeecCCCCceEEEeecceEEEEEccCCCCCCeE
Q psy8139         542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTAR-WL--HNGEPLTSGGRYEITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       542 V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~-W~--~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      +..+|.+..+    ....+..|..+.|.|.+.|.|.|.+. |.  ++|..+.......+......++|.|.++.+.|.|.
T Consensus       162 ~~~~p~~~~~----~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~  237 (731)
T 2v5y_A          162 CTRTPHFLRI----QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK  237 (731)
T ss_dssp             CSSSCEECCC----CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEE
T ss_pred             cccccccccc----cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeE
Confidence            2245555422    35688899999999999999999998 77  57766643222222222235789999999999999


Q ss_pred             EEEEEEeCCCC-ceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcC--------------
Q psy8139         619 YQAHGVNSLGE-DVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRP--------------  683 (1101)
Q Consensus       619 y~c~A~N~~G~-~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~--------------  683 (1101)
                      |+|.|.|..|. .+..+.+.|..+|.+|..+.+...+.+++.|+|.++..+++.+|.+|.|+|...              
T Consensus       238 Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~  317 (731)
T 2v5y_A          238 YRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTS  317 (731)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSE
T ss_pred             EEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcce
Confidence            99999999998 566788999999999999999999999999999988777778999999987211              


Q ss_pred             -------------------------CCCCCCCcc------cC-CCC------CCCCceEEEEeeCCCCCC-CCCcceEEE
Q psy8139         684 -------------------------PGPPGKPQL------LP-DSP------SLDRDVFTIRWEPPEYDG-GSPVLGYLV  724 (1101)
Q Consensus       684 -------------------------~~~p~~p~~------~~-~~~------~~~~~si~l~W~pP~~~~-~~~i~~Y~V  724 (1101)
                                               .++++.+..      .| .+|      .+++++++|+|++|..+. ++++.+|.|
T Consensus       318 ~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v  397 (731)
T 2v5y_A          318 YKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTV  397 (731)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEE
T ss_pred             EEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEE
Confidence                                     111121111      01 111      457899999999985432 467889999


Q ss_pred             EEEeCCCCCcee----ecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCc-ccc-cc
Q psy8139         725 EHRRTGSPYWVR----ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS-FIR-AL  798 (1101)
Q Consensus       725 ~~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~-~~~-~~  798 (1101)
                      .|+......+..    ........+.++|.+|.|++.|.|+|.|.|..|.|+ |....+  .+.++.|..||. .+. ..
T Consensus       398 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~--~T~~~~P~~p~~~~~~~~~  474 (731)
T 2v5y_A          398 HYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIV--QTDEDLPGAVPTESIQGST  474 (731)
T ss_dssp             EEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEE--ECCCCCCCCCCTTTCEEEE
T ss_pred             EEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEE--EccCCCCCCCCcceEEeee
Confidence            999876443321    123336678999999999999999999999999974 443322  233466666653 333 33


Q ss_pred             cccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCC-------ceeeeeccccccCC
Q psy8139         799 HDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNED-------DYDIVETNEHTGTG  871 (1101)
Q Consensus       799 ~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~-------~~~~v~~~~~~~~~  871 (1101)
                      .++++.+.|.||...            ++++.            .|.|.|+.......+       ....+     .+..
T Consensus       475 ~~~si~l~W~~P~~~------------~g~i~------------~Y~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  525 (731)
T 2v5y_A          475 FEEKIFLQWREPTQT------------YGVIT------------LYEITYKAVSSFDPEIDLSNQSGRVSK-----LGNE  525 (731)
T ss_dssp             ETTEEEEECCCCSCC------------SSCCC------------EEEEEEEEEEECC---CCCCCEEEEEE-----ETTC
T ss_pred             cCCeEEEEEcCCCCC------------CCCcc------------ceEEEEEECcCCCccccccCcceEEee-----cCCc
Confidence            366788899886432            45566            888888776543221       11111     1222


Q ss_pred             CCCCCCCccCcccce--eeccccccc--CceeecccCCCCccCCCCCChh-hhhhhhhhhccc-cccccccchhhccccc
Q psy8139         872 APSDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHYPTLDEE-EEEEDRESLVKD-RESSVKGKEEEAKVIK  945 (1101)
Q Consensus       872 ~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~P~~v~~-~~~~~n~t~v~v-p~~~~nG~i~gY~I~~  945 (1101)
                      +...+.+|.+++.|.  |+|.|..|.  +..+...|.+++|..+|.++.. ...+.++..|.| |+...||.|++|+|  
T Consensus       526 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp~~~~g~I~~Y~v--  603 (731)
T 2v5y_A          526 THFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQI--  603 (731)
T ss_dssp             CEEEECSCCTTEEEEEEEEEEETTEEEEEEEEEEECCCCCCCC-------------------------------------
T ss_pred             ceEEecCCCCCCEEEEEEEEEeCCccCCCcccEEEcCCCCCCCCCcccccccccCCceEEEEEeCCCCCCCceEEEEE--
Confidence            334455555999999  999999997  4456777888888777655432 233223445555 78889999999999  


Q ss_pred             chhhhhhccc
Q psy8139         946 DDEYYENLGD  955 (1101)
Q Consensus       946 ~~~~y~~~~~  955 (1101)
                         +|+..+.
T Consensus       604 ---~~~~~~~  610 (731)
T 2v5y_A          604 ---VVEEERP  610 (731)
T ss_dssp             ----------
T ss_pred             ---EEEecCC
Confidence               6665543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.98  E-value=2.5e-30  Score=287.85  Aligned_cols=285  Identities=31%  Similarity=0.521  Sum_probs=241.7

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVT-DNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.|...|.++.+..|++++|.|.+.|.|.+.+.|++++..+... .++.+.. .++...|.|.++...|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            5788998999999999999999999999999999999999988654 3444433 4566799999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCC--CCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQ--YEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL  606 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~--~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl  606 (1101)
                      |..|.....+.|.|..+|.+..++.  ......+..|..+.|.|.+.|.|.+.+.|++++..+..+.++.+...+...+|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l  162 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEE
T ss_pred             cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEE
Confidence            9999888888999988776654431  12345778899999999999999999999999999887777877777778899


Q ss_pred             EEcc-CCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCC
Q psy8139         607 RISD-ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPG  685 (1101)
Q Consensus       607 ~i~~-l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~  685 (1101)
                      .|.+ +...|.|.|+|.|.|..|....+..+.|..+|.+|.++.+....++++.|+|.+|..                  
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~------------------  224 (305)
T 2nzi_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPAS------------------  224 (305)
T ss_dssp             EETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSC------------------
T ss_pred             EEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCcc------------------
Confidence            9999 999999999999999999999999999999999998888777777777777776543                  


Q ss_pred             CCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEE
Q psy8139         686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  765 (1101)
Q Consensus       686 ~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  765 (1101)
                                                  +++.+++.|.|++++.....|.....  .....++|.+|.+++.|.|+|.|.
T Consensus       225 ----------------------------~g~~~i~~y~v~~~~~~~~~w~~~~~--~~~~~~~i~~l~~~~~y~~~~~A~  274 (305)
T 2nzi_A          225 ----------------------------DGGSKITNYIVEKCATTAERWLRVGQ--ARETRYTVINLFGKTSYQFRVIAE  274 (305)
T ss_dssp             ----------------------------CSBSCEEEEEEEEEETTSCCEEEEEE--ESSSEEEECSCCSSCEEEEEEEEE
T ss_pred             ----------------------------CCCCceeEEEEEEecCCCCccEECcc--ccCceEEecCCCCCCeEEEEEEEE
Confidence                                        34456778888888887778887665  347889999999999999999999


Q ss_pred             cCCccCCCCCCCCcEEec
Q psy8139         766 NVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       766 n~~G~g~~S~~s~~~t~~  783 (1101)
                      |..|.|.+|..+..+++.
T Consensus       275 N~~G~~~~S~~~~~~~t~  292 (305)
T 2nzi_A          275 NKFGLSKPSEPSEPTITK  292 (305)
T ss_dssp             ETTEECCCCCCCCCEECC
T ss_pred             eCCcccCCcCCCCCEEcC
Confidence            999999999988877643

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=317.68  Aligned_cols=407  Identities=16%  Similarity=0.204  Sum_probs=250.4

Q ss_pred             ceEEcCcccc--ccceEEEcCccCCc-cEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeE
Q psy8139         394 YWVRASPHMV--EDTELMVSGLEPGW-RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKV  470 (1101)
Q Consensus       394 ~w~~~~~~~~--~~~~l~i~~L~p~d-~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v  470 (1101)
                      .|.+.+....  ....+.|..+..++ .+.|+|.+.|..|....    ..+.+... ....+|.|. .+.++.+..|+++
T Consensus       109 ~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~----~~v~~~~~-~~~~~p~~~-~~~~~~v~~G~~v  182 (731)
T 2v5y_A          109 IWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI----DEVKVLGH-PCTRTPHFL-RIQNVEVNAGQFA  182 (731)
T ss_dssp             EEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEE----CCBEEESS-CCSSSCEEC-CCCCEEEETTSCE
T ss_pred             eEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEE----eeEEeeec-ccccccccc-cccceEEeCCCcE
Confidence            4665553321  23457777663444 58999988887775432    12233221 234667776 6678999999999


Q ss_pred             EEEEEEeccCCCeEE-EE--ECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc-eEEEEEEeeccCC
Q psy8139         471 EFTVQVEGIPTPKVS-WY--KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH-SITKARLRLEAPP  546 (1101)
Q Consensus       471 ~L~C~~~g~p~~~v~-W~--~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~-~~~s~~l~V~~~p  546 (1101)
                      +|.|.+.|.|.|.+. |+  ++|..+.......+......++|.|.++.+.|.|.|+|.|.|..|. .+..+.|.|..+|
T Consensus       183 ~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P  262 (731)
T 2v5y_A          183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPP  262 (731)
T ss_dssp             EEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCC
T ss_pred             EEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCC
Confidence            999999999999988 77  5776554322111111122468999999999999999999999998 5566889999888


Q ss_pred             ccccCCCCCCCeEEeeCCEEEEEEEEeecC--CC----eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEE
Q psy8139         547 TIRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PP----TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       547 ~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~----~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .++.++..    .......+.|.|.....+  .+    .|.|...+.      .+.........++.|.+|.+++.|.|+
T Consensus       263 ~~~~~p~~----~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~------~~~~~~~~~~~~~~i~~L~p~t~Y~~~  332 (731)
T 2v5y_A          263 VPIAPPQL----ASVGATYLWIQLNANSINGDGPIVAREVEYCTASG------SWNDRQPVDSTSYKIGHLDPDTEYEIS  332 (731)
T ss_dssp             CBSSCCEE----EEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSS------SCEEEEECCSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCcce----eccCCceEEEEeCCcccCCCCccEEEEEEEEECCC------CceEEeccCcceEEEeCCCCCCEEEEE
Confidence            76554431    222345566777653221  11    455654321      122222334578999999999999999


Q ss_pred             EEEE--eCCCCceeEEEEEEec----CCCCCCccEEEEecCCeEEEEeecCCCCC-CcccceeEEEEEcC----------
Q psy8139         621 AHGV--NSLGEDVASFLVTVTD----RPLPPGKAKVVMTLGKSVTLSWSEPEDDG-GCKIGNYIVEYFRP----------  683 (1101)
Q Consensus       621 c~A~--N~~G~~~~s~~l~v~~----~P~~P~~~~~~~~~~~sv~lsW~~p~~~~-g~~i~~Y~v~~~~~----------  683 (1101)
                      |.|.  |..|.+..+..+.+..    +|.+|.++.+...+.+++.|+|++|..++ .+.+.+|.|+|...          
T Consensus       333 V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~  412 (731)
T 2v5y_A          333 VLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREE  412 (731)
T ss_dssp             EEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEE
T ss_pred             EEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCcccee
Confidence            9999  9999887655454443    45788899999999999999999886432 24667787766211          


Q ss_pred             ----------------------------------------------CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCC
Q psy8139         684 ----------------------------------------------PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  717 (1101)
Q Consensus       684 ----------------------------------------------~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~  717 (1101)
                                                                    .++|+.|+........+.+++.|+|++|... ++
T Consensus       413 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~S~~~~~~T~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~~-~g  491 (731)
T 2v5y_A          413 VSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQT-YG  491 (731)
T ss_dssp             EECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEECCCEEEECCCCCCCCCCTTTCEEEEETTEEEEECCCCSCC-SS
T ss_pred             EEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCCCceEEEEccCCCCCCCCcceEEeeecCCeEEEEEcCCCCC-CC
Confidence                                                          1122222211100012367999999998654 45


Q ss_pred             CcceEEEEEEeCCCCC-------ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCC
Q psy8139         718 PVLGYLVEHRRTGSPY-------WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA  790 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~-------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~  790 (1101)
                      +|.+|.|+|+..+...       +..........++++|.+|.|++.|.|+|.|.|..|.|++|.   ....+....|..
T Consensus       492 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~---~~~~T~~~~P~~  568 (731)
T 2v5y_A          492 VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT---NQFTTKISAPSM  568 (731)
T ss_dssp             CCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE---EEEECCCCCCCC
T ss_pred             CccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc---cEEEcCCCCCCC
Confidence            7999999998765321       111122235678999999999999999999999999988873   222333355555


Q ss_pred             CCcccc---cccccceeccccCCCCCCccccce
Q psy8139         791 APSFIR---ALHDTTALEDEKPRNTNNCDYESK  820 (1101)
Q Consensus       791 ~p~~~~---~~~~s~~~~~w~p~~~~~~~~~~~  820 (1101)
                      |+....   ....+++.+.|.||...++.+..|
T Consensus       569 p~~~~~~~~~~~~~si~l~W~pp~~~~g~I~~Y  601 (731)
T 2v5y_A          569 PAYELETPLNQTDNTVTVMLKPAHSRGAPVSVY  601 (731)
T ss_dssp             ---------------------------------
T ss_pred             CCcccccccccCCceEEEEEeCCCCCCCceEEE
Confidence            544332   345667788998876555544444

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.97  E-value=7.4e-29  Score=301.10  Aligned_cols=396  Identities=19%  Similarity=0.252  Sum_probs=284.4

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      .+.|.|.++...|+|.|+|.|.|..|...+. ..+.+...+.+|.-...+..........++|.|...    |.+...  
T Consensus        60 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~-~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~----g~p~~~--  132 (570)
T 3b43_A           60 VASLVINKVDHSDVGEYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN----GSEPLQ--  132 (570)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEE-EEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEE----SSSSCE--
T ss_pred             EEEEEEccCChhhCEEEEEEEEeCCceEEEE-EEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEc----cCCCCE--
Confidence            4679999999999999999999988876544 333443333333211111100112244566776653    111111  


Q ss_pred             EEEEecCC----CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCc
Q psy8139         385 VEHRRTGS----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH  460 (1101)
Q Consensus       385 v~~~~~~~----~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~  460 (1101)
                      +.|...+.    ...... ........|.|.++.+.|.|.|+|.|.|..|....+   ..+++..   ...||.+...|.
T Consensus       133 v~W~k~g~~l~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~---~~~pp~~~~~p~  205 (570)
T 3b43_A          133 VSWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS---AKLTLSE---HEVPPFFDLKPV  205 (570)
T ss_dssp             EEEEETTEECCCCSSEEE-EEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEEC---CCCCCEEEECCC
T ss_pred             EEEEECCEECcCCCCEEE-EEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEE---EEEEEcC---CCCCCccccCCc
Confidence            22211110    000000 001123579999999999999999999998865322   2233322   245788888888


Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      +..+..|++++|.|.+.|.|.+.++|++++..+.....+.+....+...|.|.++...|+|.|+|.|.|..|....++.|
T Consensus       206 ~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l  285 (570)
T 3b43_A          206 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL  285 (570)
T ss_dssp             CBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEE
Confidence            88899999999999999999999999999999987777777666666799999999999999999999999999889999


Q ss_pred             eeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEE
Q psy8139         541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       541 ~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .|..+|.+......  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..+..+.+...+....|.|.++...|.|.|+
T Consensus       286 ~V~~~p~~~~~~~~--~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  363 (570)
T 3b43_A          286 GVQEPPRFIKKLEP--SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT  363 (570)
T ss_dssp             CCBCCCEEEECCCS--BCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EeecCCcccccCCC--ccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEE
Confidence            99999887544322  2356789999999999999999999999999998877777766666788999999999999999


Q ss_pred             EEEEeCCCCceeEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCC
Q psy8139         621 AHGVNSLGEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSP  697 (1101)
Q Consensus       621 c~A~N~~G~~~~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~  697 (1101)
                      |.|.|..|....+..|.|..+|.   .|..  +....+..+.|.|...+.+                             
T Consensus       364 C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~--~~~~~G~~v~l~C~~~g~P-----------------------------  412 (570)
T 3b43_A          364 CEAHNAAGSASSSTSLKVKEPPVFRKKPHP--VETLKGADVHLECELQGTP-----------------------------  412 (570)
T ss_dssp             EEEEBTTBCCEEEEEECEECCCEECSCCCC--EEECTTCCEEEEEEEESSS-----------------------------
T ss_pred             EEEEeCCCEEEEEEEEEecCCCeeecCCCc--eeecCCCEEEEEEEEecCC-----------------------------
Confidence            99999999999999999988773   3333  3345678899999853211                             


Q ss_pred             CCCCceEEEEeeCCCCCCCCCc---ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i---~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                           ...+.|....    .++   ..|.+            ...  ....++.|.++.+.+.+.|.|.|.|..|.
T Consensus       413 -----~p~v~W~k~g----~~l~~~~~~~~------------~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  465 (570)
T 3b43_A          413 -----PFQVSWHKDK----RELRSGKKYKI------------MSE--NFLTSIHILNVDSADIGEYQCKASNDVGS  465 (570)
T ss_dssp             -----SCCCEEEETT----EECCSSSSEEE------------EEE--TTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             -----CCEEEEEECC----EECcCCCCEEE------------EEc--CCEEEEEECCCChhhCEEEEEEEEECCCe
Confidence                 1235776421    111   01211            111  23357889999999999999999999996

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.97  E-value=1.1e-28  Score=299.76  Aligned_cols=395  Identities=21%  Similarity=0.301  Sum_probs=280.1

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCC---CCCcccCCCCCCCCCeeEEEEeCCCCCCCcCee
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP---GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  381 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P---~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~  381 (1101)
                      .+.|.|.++...|.|.|.|.|.|..|...++ ..+.+.....+|   ..|..+.   ......++|.|...    |.+..
T Consensus       156 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~pp~~~~~p~~~~---v~~G~~~~l~C~~~----g~p~p  227 (570)
T 3b43_A          156 VATLQILQTDQSHVGQYNCSASNPLGTASSS-AKLTLSEHEVPPFFDLKPVSVD---LALGESGTFKCHVT----GTAPI  227 (570)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEE-EEEEEECCCCCCEEEECCCCBC---CBSBSCEEEEEEEE----SSSCC
T ss_pred             EEEEEECcCChHHCEEEEEEEEeCCcEEEEE-EEEEEcCCCCCCccccCCceeE---ecCCCeEEEEEEEE----ECCCC
Confidence            3568899999999999999999988875443 333333322222   1222211   12345567777653    11111


Q ss_pred             EEEEEEEecC-----CCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeee
Q psy8139         382 GYLVEHRRTG-----SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI  456 (1101)
Q Consensus       382 ~Y~v~~~~~~-----~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~  456 (1101)
                      .  +.|...+     +..... . .......|.|.++++.|+|.|+|.|.|..|...     ..+.+.+    ..+|.+.
T Consensus       228 ~--i~W~k~g~~i~~~~~~~~-~-~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~-----~~~~l~V----~~~p~~~  294 (570)
T 3b43_A          228 K--ITWAKDNREIRPGGNYKM-T-LVENTATLTVLKVTKGDAGQYTCYASNVAGKDS-----CSAQLGV----QEPPRFI  294 (570)
T ss_dssp             E--EEEEETTEECCTTSSEEE-E-EETTEEEEEESSBCGGGCEEEEEEEEETTEEEE-----EEEEECC----BCCCEEE
T ss_pred             E--EEEEECCEECcCCCcEEE-E-EECCEEEEEEcccCcccCEEEEEEEECCCCcEE-----EEEEEEe----ecCCccc
Confidence            1  2221111     111100 0 011235799999999999999999999888642     2234443    3567776


Q ss_pred             ecCc-eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         457 RALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       457 ~~p~-~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      ..+. ...+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.+...+....|.|.++...|+|.|+|.|.|..|...
T Consensus       295 ~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~  374 (570)
T 3b43_A          295 KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS  374 (570)
T ss_dssp             ECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCE
T ss_pred             ccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEE
Confidence            5543 345789999999999999999999999999999887777776666777999999999999999999999999999


Q ss_pred             EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCC
Q psy8139         536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD  615 (1101)
Q Consensus       536 ~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~  615 (1101)
                      .++.|.|..+|.+...+.   ...+..|..+.|.|.+.|.|.|.+.|+++|..+..+.++.+...+...+|.|.++...|
T Consensus       375 ~~~~l~V~~~P~~~~~~~---~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D  451 (570)
T 3b43_A          375 SSTSLKVKEPPVFRKKPH---PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSAD  451 (570)
T ss_dssp             EEEEECEECCCEECSCCC---CEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGG
T ss_pred             EEEEEEecCCCeeecCCC---ceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhh
Confidence            999999999998876553   45677899999999999999999999999999988888887777667899999999999


Q ss_pred             CeEEEEEEEeCCCCceeEEEEEEecCCCCCCcc-EEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccC
Q psy8139         616 RGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA-KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLP  694 (1101)
Q Consensus       616 ~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~-~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~  694 (1101)
                      .|.|+|.|.|..|.......+.|..+|.....+ ......+..+.|.|...+.                           
T Consensus       452 ~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~---------------------------  504 (570)
T 3b43_A          452 IGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGA---------------------------  504 (570)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESC---------------------------
T ss_pred             CEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecC---------------------------
Confidence            999999999999998888888888766321111 1223456778888875321                           


Q ss_pred             CCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         695 DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       695 ~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                             ....+.|....    +.+.        ..+.. ..+. .......+.|.++.+.....|.|.|.|.+|..
T Consensus       505 -------p~~~v~W~k~~----~~~~--------~~~~~-~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  560 (570)
T 3b43_A          505 -------EPISVAWFKDK----GEIV--------RESDN-IWIS-YSENIATLQFSRAEPANAGKYTCQIKNEAGTQ  560 (570)
T ss_dssp             -------SSCCCEEEETT----EECC--------CCTTT-EEEC-CCSSEEEEEESSCCTTCCEEEEEEEECSSCEE
T ss_pred             -------CCCEEEEEeCC----eEec--------cCCCe-EEEE-ECCCEEEEEECcCCHHHCEEEEEEEEECCcEE
Confidence                   11245675421    0000        00001 1111 11344678999999999999999999999973

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=2e-28  Score=282.73  Aligned_cols=307  Identities=19%  Similarity=0.247  Sum_probs=222.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ...|.|.++++.|+|.|+|.|.|..|...     ..+.+.+.    .+|.+...+....+..|+.+.|.|.+.|.|.+.+
T Consensus        62 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i  132 (389)
T 2jll_A           62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQ-----KSMYLDIE----YAPKFISNQTIYYSWEGNPINISCDVKSNPPASI  132 (389)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEE-----EEEEEEEE----EEEEECCSCCEEEECTTCCEEEEECEEEESCCEE
T ss_pred             cceEEEcccChhhCEEEEEEEEeCCCCcc-----eEEEEEEE----eCCEEecCcceEEeccCCEEEEEEEEEecCCCeE
Confidence            46899999999999999999999988642     33445443    4566666666667899999999999999999999


Q ss_pred             EEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee
Q psy8139         485 SWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM  562 (1101)
Q Consensus       485 ~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~  562 (1101)
                      .|+++|..+....  ++.+...+....|.|.++...|.|.|+|.|.|..|.......+.+..+|..+...    ......
T Consensus       133 ~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~----~~~~~~  208 (389)
T 2jll_A          133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV----KIIELS  208 (389)
T ss_dssp             EEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEE----EEEEEC
T ss_pred             EEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcce----EEeecc
Confidence            9999999887543  5666666667799999999999999999999999998888888876655422110    112223


Q ss_pred             CCEEEEEEEEeec----CC--CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         563 GEIIKLKVSMAGM----PP--PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       563 g~~~~l~c~~~g~----p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +..+.|.|.....    |.  ..+.|..++...    ...+........+.|.+|.+++.|.|+|.|.|..|.+..+..+
T Consensus       209 ~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~  284 (389)
T 2jll_A          209 QTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI----WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE  284 (389)
T ss_dssp             SSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC----CEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred             CCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc----cEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcce
Confidence            4667788864321    21  246777765421    1223333445789999999999999999999999987665555


Q ss_pred             EEec----CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCC
Q psy8139         637 TVTD----RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE  712 (1101)
Q Consensus       637 ~v~~----~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~  712 (1101)
                      .+..    +|.+| .+.....+.+++.|+|.+|.                                              
T Consensus       285 ~~~t~~~~~p~~p-~~~~~~~~~~~v~l~W~~p~----------------------------------------------  317 (389)
T 2jll_A          285 IFQTLPVREPSPP-SIHGQPSSGKSFKLSITKQD----------------------------------------------  317 (389)
T ss_dssp             EEECCCCCCCCCC-CEEEEEETTTEEEEEECCCC----------------------------------------------
T ss_pred             EEEecCCCCCCCC-ccccccCcCCEEEEEEECCC----------------------------------------------
Confidence            5543    44555 34444455666666666442                                              


Q ss_pred             CCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         713 YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       713 ~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                       +++++|.+|.|+|+..+...|..........++++|.+|.|++.|.|+|.|.|..|.|++|..
T Consensus       318 -~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~  380 (389)
T 2jll_A          318 -DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY  380 (389)
T ss_dssp             -CCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE
T ss_pred             -CCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee
Confidence             345678889999988777677654444467789999999999999999999999999887643

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=310.06  Aligned_cols=458  Identities=13%  Similarity=0.131  Sum_probs=298.6

Q ss_pred             ecCceeEEccCCeEEEEEEEe-------ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         457 RALHDTTALEDEKVEFTVQVE-------GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~-------g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..|.+..+..|++++|.|.+.       +.+.+.|.|.++|..+.... +.. .++..+.|+|.++...|++ |.|.+..
T Consensus         8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~-~~~-~~~~~~~l~i~~~~~~~~~-y~C~~~~   84 (589)
T 3l5h_A            8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTI-INRTASSVTFTDIASLNIQ-LTCNILT   84 (589)
T ss_dssp             CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGG-CBC-CSSSCCBCCCCCCCSSCCC-CCCC-CC
T ss_pred             EecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHH-ccc-cCCcEeEEEEecCCCccee-eEEeccc
Confidence            356677788999999999997       66778999999997665432 222 2344668999999988765 7788764


Q ss_pred             CCC--ceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe--------
Q psy8139         530 RAG--HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH--------  599 (1101)
Q Consensus       530 ~~g--~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~--------  599 (1101)
                      ...  .....+.|.|..+|                +.+..|.|...+.....++|..+.... ....|.+..        
T Consensus        85 ~~~~~~~~~~~~l~v~~pP----------------~~P~nl~c~~~~~~~~~~~W~~~~~~~-~~~~y~l~~~~~~~~~~  147 (589)
T 3l5h_A           85 FGQLEQNVYGITIISGLPP----------------EKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLKSEWATHKFA  147 (589)
T ss_dssp             TTCC-CCCCCCCCCC-CCC----------------CCCEEEEEEEETTSCEEEEEECCSCCS-SCEEEEECCBCSSSBCC
T ss_pred             CCCcccEEEeEEEeccCCC----------------CCCEeeEEEECCCceEEEEECCCCcCC-cCceEEEEEEEcCCCcc
Confidence            211  11223344554444                344678888888778888898743221 111222221        


Q ss_pred             -----ecceEEEEEc-cCCCCCCeEEEEEEEeCCCCcee-EEEEEEe--cCCCCCCccEEE--EecCCeEEEEeecCCCC
Q psy8139         600 -----TDRYLNLRIS-DARRADRGEYQAHGVNSLGEDVA-SFLVTVT--DRPLPPGKAKVV--MTLGKSVTLSWSEPEDD  668 (1101)
Q Consensus       600 -----~~~~~sl~i~-~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~--~~P~~P~~~~~~--~~~~~sv~lsW~~p~~~  668 (1101)
                           .+...++.+. ++.+...|.|+|.|.|..|.+.. ...+...  ..|.+|.++.+.  ....+++.|+|++|...
T Consensus       148 ~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~  227 (589)
T 3l5h_A          148 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK  227 (589)
T ss_dssp             CEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGG
T ss_pred             cCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCC
Confidence                 1123445566 78889999999999999998633 2233222  368999999884  46788999999988765


Q ss_pred             CCcccceeEEEEEcC------------------------------------------CCCC---CCCc------ccC-CC
Q psy8139         669 GGCKIGNYIVEYFRP------------------------------------------PGPP---GKPQ------LLP-DS  696 (1101)
Q Consensus       669 ~g~~i~~Y~v~~~~~------------------------------------------~~~p---~~p~------~~~-~~  696 (1101)
                      ++ .+..|.|+|...                                          .|++   +.+.      ..| .+
T Consensus       228 ~~-~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~  306 (589)
T 3l5h_A          228 SV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA  306 (589)
T ss_dssp             GT-SCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSC
T ss_pred             Ce-eeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCC
Confidence            44 788899988211                                          1111   1111      011 01


Q ss_pred             ----------CCCCCceEEEEeeC-CCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEE
Q psy8139         697 ----------PSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  765 (1101)
Q Consensus       697 ----------~~~~~~si~l~W~p-P~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  765 (1101)
                                ...+.+++.|+|+| +..+.+++|.+|.|.|+..+. .|....   ...+.+++  |.|++.|.|+|.|.
T Consensus       307 p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~-~~~~~~---~~~~~~~~--l~~~~~Y~~~V~A~  380 (589)
T 3l5h_A          307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-HLQNYT---VNATKLTV--NLTNDRYLATLTVR  380 (589)
T ss_dssp             CCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTS-CCCBCC---CSSSCCEE--CCCSSCCCEEEEEE
T ss_pred             CcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCC-Cceeec---cCCceEEE--EeCCCCEEEEEEEE
Confidence                      23467899999998 455677889999999987665 333321   34455555  88999999999999


Q ss_pred             cCCccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeE
Q psy8139         766 NVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIET  844 (1101)
Q Consensus       766 n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y  844 (1101)
                      |..|.|+++...   .......|+.||..+. ...++++.+.|.+|..               ++.            +|
T Consensus       381 n~~G~~~~s~~~---~~~~~~~~~~p~~~l~~~~~~~si~l~W~~p~~---------------~i~------------~Y  430 (589)
T 3l5h_A          381 NLVGKSDAAVLT---IPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE---------------SVK------------KY  430 (589)
T ss_dssp             BTTBCCCCCCCC---CCCTTCCCCSCCCSCEEEECSSSEEEECCCCSS---------------CCS------------CB
T ss_pred             eCCccCCCeEEE---eecccccCCCCcceEEEEECCCeEEEEEECCCC---------------Ccc------------EE
Confidence            999998877432   1121123455665554 3345677888987542               233            67


Q ss_pred             EeeeeccCCCCC----Cceeeeec-cccccCCCCCCCCCccCcccce--eeccccccc--CceeecccCCCCccCCCCCC
Q psy8139         845 ISSFRDKYVDNE----DDYDIVET-NEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHYPTLD  915 (1101)
Q Consensus       845 ~v~~r~~~~~~~----~~~~~v~~-~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~P~~v  915 (1101)
                      .|.|+..+....    |....... ..+.       +.+|.+.+.|.  |+|.|..|.  +..+..+|.+++|..+| ++
T Consensus       431 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~L~p~t~Y~~~V~A~~~~g~g~~~~~~~~t~~~~P~~pp-~l  502 (589)
T 3l5h_A          431 ILEWCVLSDKAPCITDWQQEDGTVHRTYL-------RGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP-TV  502 (589)
T ss_dssp             CCEEEEECSSSCCCEEECCBCSSCCEEEC-------CSCCCSSSEEEEEECBEETTEECCCEEEEEESSCCCCSSCC-CC
T ss_pred             EEEEEECCCCCCCccCcEEeeCCcceEEe-------hhccccCcEEEEEEEEEeCCcccCCEEEEEEeccCCCCCCC-eE
Confidence            777766554321    32221111 1122       24455999999  999999987  55677888888888766 68


Q ss_pred             hhhhhhhhhhhccc-c--ccccccchhhcccccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec
Q psy8139         916 EEEEEEDRESLVKD-R--ESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       916 ~~~~~~~n~t~v~v-p--~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      .+...+.++..|.| |  +...||.|+||.|     +|+..++... .. ........++|.+|.+|+.|.|+.
T Consensus       503 ~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v-----~~~~~~~~~~-~~-~~~~~~~~~~~~~L~p~t~Y~~~V  569 (589)
T 3l5h_A          503 RTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI-----FYRTIIGNET-AV-NVDSSHTEYTLSSLTSDTLYMVRM  569 (589)
T ss_dssp             CEECCCSSCBEEBCCCCCHHHHCSCEEEEEE-----CCBCSSCCCC-CE-EECTTCCBCCBCSCCSSCCEECCE
T ss_pred             EEeecccceEEEEecCCCHHHcCccceeEEE-----EEEeCCCCeE-EE-EeCCcccEEEecCCCCCCEEEEEE
Confidence            88777444555555 3  6778999999999     8877665433 22 123456688999999999999987

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.94  E-value=2.1e-26  Score=277.15  Aligned_cols=320  Identities=16%  Similarity=0.205  Sum_probs=228.3

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      ..+.|.|.++...|+|.|.|.+.|  |.  +..+.+.|..+|.+...+..+   .......++|.|....    .+...+
T Consensus        78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~--~~~~~l~V~~p~~~~~~~~~~---~v~~G~~v~l~C~~~~----~~~~~v  146 (524)
T 2ec8_A           78 KQNEWITEKAEATNTGKYTCTNKH--GL--SNSIYVFVRDPAKLFLVDRSL---YGKEDNDTLVRCPLTD----PEVTNY  146 (524)
T ss_dssp             CSSEEEESSCCSTTCEEEEEEETT--SC--EEEEEEECCCSSCSBCCCCCC---CEETTSCEEECCCBSC----CCCSCE
T ss_pred             ccceEEEcccchhhCEEEEEeecC--Cc--ceEEEEEECCCCcccccccce---EEEcCCeEEEECcCCC----CccceE
Confidence            456799999999999999999987  43  445666666544433222221   1123455666666541    111111


Q ss_pred             EEEEEec---CCCceEEcCccccccceEEEcCccCCccE-EEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC
Q psy8139         384 LVEHRRT---GSPYWVRASPHMVEDTELMVSGLEPGWRY-QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL  459 (1101)
Q Consensus       384 ~v~~~~~---~~~~w~~~~~~~~~~~~l~i~~L~p~d~y-~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p  459 (1101)
                      .......   ......    .......|.|.+++..|.| .|+|.|.|..|...    +..+.+.+...+..+|.+...|
T Consensus       147 ~W~~~~g~~l~~~~~~----~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~----s~~~~l~V~~~~~~~p~i~~~~  218 (524)
T 2ec8_A          147 SLKGCQGKPLPKDLRF----IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL----SEKFILKVRPAFKAVPVVSVSK  218 (524)
T ss_dssp             EEECSSSCCCCSSCEE----EEETTTEEEEESCCGGGTTCEEEEEEC----CCC----CCCEECCEECCCCSCCEEECSC
T ss_pred             EEEccCCcCcCCCCce----eECCCccEEEeccchhhCCceEEEEEEECCceEE----EEEEEEEEEeCCCCCCcEEecC
Confidence            1111000   000001    0123457999999999999 99999999866432    2345666654556789998888


Q ss_pred             ceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEe--ecCCcEEEE---ecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEI--FSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~--~~~~~~~~~---~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .+..+..|++++|.|.+.|.|.+. +.|++++..+  .......+.   .......|.|.++...|+|.|+|.|.|..|.
T Consensus       219 ~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~  298 (524)
T 2ec8_A          219 ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS  298 (524)
T ss_dssp             SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE
T ss_pred             CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCc
Confidence            888999999999999999999887 9999998763  222222221   1122458999999999999999999999999


Q ss_pred             eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCC-ceEEEeec----ceEEEE
Q psy8139         534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGG-RYEITHTD----RYLNLR  607 (1101)
Q Consensus       534 ~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~-~~~~~~~~----~~~sl~  607 (1101)
                      ....+.|.|..+|.+...+.......+..|+.+.|.|.+.|.|.|. +.|+++|..+.... .+.....+    ...+|.
T Consensus       299 ~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~  378 (524)
T 2ec8_A          299 ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELH  378 (524)
T ss_dssp             EEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEE
T ss_pred             eEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEE
Confidence            9889999999988876655444456888999999999999999999 99999999887654 33322222    357899


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      |.++...|.|.|+|.|.|..|....+..|.|..+|
T Consensus       379 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  413 (524)
T 2ec8_A          379 LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP  413 (524)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred             EeecCcccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence            99999999999999999999998888888887654

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.94  E-value=2.6e-24  Score=265.06  Aligned_cols=469  Identities=13%  Similarity=0.086  Sum_probs=266.1

Q ss_pred             ccCcceEEEeeecccccccccceeeeccCCCCCC-CCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-
Q psy8139         315 ENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP-GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-  392 (1101)
Q Consensus       315 ~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P-~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-  392 (1101)
                      ....|-+.|-. |.-|..-..+..+ +.+.|.+| ..+.+    ..++.++++|+|.+|..+++.++. |.|+++...+ 
T Consensus       132 ~~c~g~~~Cc~-n~cG~~C~~P~~~-~~~~P~~P~~~l~v----~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~  204 (680)
T 1zlg_A          132 NECSGVKKCCS-NGCGHTCQVPKTL-YKGVPLKPRKELRF----TELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGI  204 (680)
T ss_pred             ccCCCcccccc-cccccccccccee-eecccccccccceE----EeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCC
Confidence            34556666633 4444433343333 45666666 55555    267899999999998655677887 9999987633 


Q ss_pred             -------CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEc
Q psy8139         393 -------PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL  465 (1101)
Q Consensus       393 -------~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~  465 (1101)
                             ..|..+..  .....++|.+|.|++.|.|+|.|.|..|...++..+..+.......++.+      |.++.+.
T Consensus       205 ~~~~~~~~~w~~v~~--~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~------P~~l~~~  276 (680)
T 1zlg_A          205 HPSEDDATHWQTVAQ--TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPA------PANLRLA  276 (680)
T ss_pred             CcCccccCceEEEEe--cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCC------CCceEee
Confidence                   46776543  34578999999999999999999999995444433333332211112222      3333321


Q ss_pred             cC--CeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         466 ED--EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       466 ~g--~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      ..  ..-       +.-...+.|.....   .        ++..           .  .|.+......+.          
T Consensus       277 ~~~~~~~-------g~~sv~l~W~pP~~---~--------~g~i-----------~--~Y~V~~~~~~~~----------  315 (680)
T 1zlg_A          277 NSTVNSD-------GSVTVTIVWDLPEE---P--------DIPV-----------H--HYKVFWSWMVSS----------  315 (680)
T ss_pred             eeeecCC-------CceEEEEEecCCCC---C--------CCce-----------e--EEEEEEEecccc----------
Confidence            11  000       00012455532110   0        0000           0  121111100000          


Q ss_pred             cCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       544 ~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                       ..                             ..+...|..            ....+....++|.+|.+++.|.|++.|
T Consensus       316 -~~-----------------------------~~~~~~~~~------------~~v~~~~~~~~l~~L~p~t~Y~~~V~A  353 (680)
T 1zlg_A          316 -KS-----------------------------LVPTKKKRR------------KTTDGFQNSVILEKLQPDCDYVVELQA  353 (680)
T ss_pred             -cc-----------------------------cCCccceEE------------EEEcCCeeEEEeCCCCCCCEEEEEEEE
Confidence             00                             000011211            111222467889999999999999999


Q ss_pred             EeCCCCceeEE---EEEEecCCCC--CCccEEEEecCCeEEE-----------EeecCCCCCCcccceeEEEEEcCCCCC
Q psy8139         624 VNSLGEDVASF---LVTVTDRPLP--PGKAKVVMTLGKSVTL-----------SWSEPEDDGGCKIGNYIVEYFRPPGPP  687 (1101)
Q Consensus       624 ~N~~G~~~~s~---~l~v~~~P~~--P~~~~~~~~~~~sv~l-----------sW~~p~~~~g~~i~~Y~v~~~~~~~~p  687 (1101)
                      .|..|.+..+.   .+.+.+.+.+  |.++.+...+.+++.|           +|.+|...++  +.+|           
T Consensus       354 ~n~~G~g~~S~~~~~v~~~T~~~~P~p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~~--~~~y-----------  420 (680)
T 1zlg_A          354 ITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDG--QLQV-----------  420 (680)
T ss_pred             EECCCcCCCCCCceeEEEECCCCCCCccccccccccCccccccccccCCCccccccCCcccCC--cceE-----------
Confidence            99999775433   2555543322  5677777788888877           9998853322  3344           


Q ss_pred             CCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCC----CCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         688 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG----SPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       688 ~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~----~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                                       .|.|....   ++.+.+|.|.|.+..    ...|..........++++|.+|.|++.|.|+|.
T Consensus       421 -----------------~v~w~~~~---~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~  480 (680)
T 1zlg_A          421 -----------------KVYWKKTE---DPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQ  480 (680)
T ss_pred             -----------------EEEEeCCC---CCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEE
Confidence                             45555432   234678888876532    122322222225678999999999999999999


Q ss_pred             EEcCCccCCCCCC--------------CCcEEecCCCCCC-----CCCcc----cc--cccccceeccccCCCCCCcccc
Q psy8139         764 AENVVGFSEPGPL--------------SEPLTVTYQRSPA-----AAPSF----IR--ALHDTTALEDEKPRNTNNCDYE  818 (1101)
Q Consensus       764 A~n~~G~g~~S~~--------------s~~~t~~~~~~P~-----~~p~~----~~--~~~~s~~~~~w~p~~~~~~~~~  818 (1101)
                      |.|..|.|+....              ...+.......|.     .+|.+    +.  ..+++ +.+.|.||..      
T Consensus       481 A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~~------  553 (680)
T 1zlg_A          481 PIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-GHFSWKMAKA------  553 (680)
T ss_pred             EecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEeccCce-EEEEecCCCC------
Confidence            9999996542111              0011111111222     56665    22  23334 7788987532      


Q ss_pred             ceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCC---Cceeeeec-cccccCCCCCCCCCccCcccce--eecccc
Q psy8139         819 SKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNE---DDYDIVET-NEHTGTGAPSDNENESDYFPEK--TIDESV  892 (1101)
Q Consensus       819 ~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~---~~~~~v~~-~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~  892 (1101)
                           ..++++.            +|.|.|+....+..   +....+.. ..+.+......+.+|.+++.|.  |+|.|.
T Consensus       554 -----~~ng~I~------------gY~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~  616 (680)
T 1zlg_A          554 -----NLYQPMT------------GFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTP  616 (680)
T ss_pred             -----CCCCCce------------eEEEEEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcC
Confidence                 2356677            89998876543321   11111111 1111223345566666999999  999999


Q ss_pred             ccc--CceeecccCCCCccCCCCCChhhhhhhhhhhccc-ccccccc-chhhccc
Q psy8139         893 YGY--DTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKD-RESSVKG-KEEEAKV  943 (1101)
Q Consensus       893 ~G~--~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~v-p~~~~nG-~i~gY~I  943 (1101)
                      .|.  +..+...|.+. +..+|.++.+...   + .|.| ||...|| .|++|.|
T Consensus       617 ~G~G~~~~~~~~T~~~-~P~~P~~l~v~~~---~-~l~W~pP~~~~G~~I~~~~~  666 (680)
T 1zlg_A          617 GGEGPATIKTFRTPEL-PPSSAHRSHLKHR---H-PHHYKPSPERYGKPIPNPLL  666 (680)
T ss_pred             CCcCCCcceEEECCCC-CCCCCCCCeEEec---c-ceeECCCCCCCCCccceeeE
Confidence            998  53444555555 4467888888766   3 7888 6666666 4455555

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.94  E-value=8.4e-24  Score=261.18  Aligned_cols=373  Identities=16%  Similarity=0.173  Sum_probs=251.6

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      .+.|.|.++...|+|.|.|.+.+..+........+.|..++.+|.-... ..........++|.|....     +...+ 
T Consensus        70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-----p~~~v-  142 (642)
T 1e07_A           70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN-NSKPVEDKDAVAFTCEPET-----QDATY-  142 (642)
T ss_pred             CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc-CceeEecCCcEEEEEECCC-----CCeeE-
Confidence            4689999999999999999997654332233355666554433321111 0000123456788887652     22222 


Q ss_pred             EEEEecCC----CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCc
Q psy8139         385 VEHRRTGS----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH  460 (1101)
Q Consensus       385 v~~~~~~~----~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~  460 (1101)
                       .|...+.    ......   ......|.|.++...|.|.|+|.|.|..|...    +..+.+.+...   |+.+...|.
T Consensus       143 -~W~~~g~~l~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~----s~~~~l~V~~~---p~~~~~~~~  211 (642)
T 1e07_A          143 -LWWVNNQSLPVSPRLQL---SNGNRTLTLFNVTRNDTASYKCETQNPVSARR----SDSVILNVLYG---PDAPTISPL  211 (642)
T ss_pred             -EEEECCeECCCCCceEE---cCCCCEEEEeCCCcccCeeEEEEEecCCCCcc----cceEEEEEEeC---CCCcEEecC
Confidence             2211111    001110   12346899999999999999999999887532    34455555422   222334566


Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE--E
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK--A  538 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s--~  538 (1101)
                      +..+..|+.+.|.|.+.|.|.+.++|+++|..+..           ...|.|.++...|+|.|+|.|.|..|....+  .
T Consensus       212 ~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~-----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~  280 (642)
T 1e07_A          212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS-----------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT  280 (642)
T ss_pred             CcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc-----------CCceEEecccccCCeEEEEEEEeCCCceEEeeeE
Confidence            77889999999999999999999999999987732           1279999999999999999999998876544  4


Q ss_pred             EEeeccCC---ccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCC
Q psy8139         539 RLRLEAPP---TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD  615 (1101)
Q Consensus       539 ~l~V~~~p---~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~  615 (1101)
                      .|.|..++   .+..    .....+..|+.+.|.|.+.+.| +.+.|+++|..+..+.++.+..  ....|.|.++...|
T Consensus       281 ~v~v~~~~~~p~i~~----~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~d  353 (642)
T 1e07_A          281 TITVYAEPPKPFITS----NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN--DNRTLTLLSVTRND  353 (642)
T ss_pred             EEEEEccCCCCEEEc----CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeC--CCCEEEEeccCccc
Confidence            56665432   2221    1223455688899999999886 7999999999887666665543  35689999999999


Q ss_pred             CeEEEEEEEeCCCCc-eeEEEEEEecCCCCCC--ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcc
Q psy8139         616 RGEYQAHGVNSLGED-VASFLVTVTDRPLPPG--KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL  692 (1101)
Q Consensus       616 ~y~y~c~A~N~~G~~-~~s~~l~v~~~P~~P~--~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~  692 (1101)
                      .|.|+|.|.|..|.. +....+.|..+|..|.  ........+..+.|.|...+.+                        
T Consensus       354 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p------------------------  409 (642)
T 1e07_A          354 VGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP------------------------  409 (642)
T ss_pred             CeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccC------------------------
Confidence            999999999999875 3457788876665431  1122345677889998853211                        


Q ss_pred             cCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCC
Q psy8139         693 LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       693 ~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  772 (1101)
                                ...+.|...    |.++                      .....+.|.++.+...+.|+|.|.|..|...
T Consensus       410 ----------~~~i~W~~~----g~~~----------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  453 (642)
T 1e07_A          410 ----------PAQYSWLID----GNIQ----------------------QHTQELFISNITEKNSGLYTCQANNSASGHS  453 (642)
T ss_pred             ----------CCeEEEEEC----CEEc----------------------CCCceEEEccCChhhCeEEEEEEEcCCCCCc
Confidence                      124667531    1100                      1234688999999999999999999998744


Q ss_pred             C
Q psy8139         773 P  773 (1101)
Q Consensus       773 ~  773 (1101)
                      .
T Consensus       454 ~  454 (642)
T 1e07_A          454 R  454 (642)
T ss_pred             c
Confidence            3

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.94  E-value=4.3e-24  Score=263.75  Aligned_cols=376  Identities=16%  Similarity=0.152  Sum_probs=259.9

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCC-CcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGK-PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~-p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      .+.|.|.++...|.|.|.|.+.|..|...+..+.+.+...|..|.. |...   .......++|.|...    +.+...+
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~---~~~~G~~~~l~C~~~----g~p~~~i  235 (642)
T 1e07_A          163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNT---SYRSGENLNLSCHAA----SNPPAQY  235 (642)
T ss_pred             CCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCc---ccccCCEEEEEEEcC----CCCCcEE
Confidence            4679999999999999999999888876566677777655443321 1111   123456788888773    2122222


Q ss_pred             EEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeE
Q psy8139         384 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT  463 (1101)
Q Consensus       384 ~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~  463 (1101)
                                .|.+.+........|.|.+++..|.|.|+|.|.|..|....+   ..+.+.+... +.+|.+. .+....
T Consensus       236 ----------~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s---~~~~v~v~~~-~~~p~i~-~~~~~~  300 (642)
T 1e07_A          236 ----------SWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRT---TVTTITVYAE-PPKPFIT-SNNSNP  300 (642)
T ss_pred             ----------EEEECCeEcccCCceEEecccccCCeEEEEEEEeCCCceEEe---eeEEEEEEcc-CCCCEEE-cCCcee
Confidence                      344444333455789999999999999999999988865332   3344444322 2334443 233444


Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EEEEEee
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRL  542 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V  542 (1101)
                      +..|+++.|.|.+.+.| +.+.|+++|..+....++.+...+  ..|.|.++...|+|.|+|.|.|..|... ....|.|
T Consensus       301 ~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  377 (642)
T 1e07_A          301 VEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV  377 (642)
T ss_pred             EecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEE
Confidence            56688899999999987 699999999988766666654443  3899999999999999999999998754 3578888


Q ss_pred             ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       543 ~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      ..+|.....  .+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..           ...|.|.++...|.|.|+|.
T Consensus       378 ~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-----------~~~L~i~~~~~~d~G~Y~C~  444 (642)
T 1e07_A          378 LYGPDDPTI--SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-----------TQELFISNITEKNSGLYTCQ  444 (642)
T ss_pred             EcCCCCCee--cCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC-----------CceEEEccCChhhCeEEEEE
Confidence            876654221  11234678899999999999999999999999987753           34589999999999999999


Q ss_pred             EEeCCCCceeE--EEEEEecCCCCCC---ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCC
Q psy8139         623 GVNSLGEDVAS--FLVTVTDRPLPPG---KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSP  697 (1101)
Q Consensus       623 A~N~~G~~~~s--~~l~v~~~P~~P~---~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~  697 (1101)
                      |.|..|....+  ..+.+..++.+|.   ........+..+.|.|....                               
T Consensus       445 a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-------------------------------  493 (642)
T 1e07_A          445 ANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-------------------------------  493 (642)
T ss_pred             EEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-------------------------------
Confidence            99999876654  4555555444442   11223346778888888531                               


Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                          ....+.|....    .++.         .+ ......   .+...++|.++.+.+.+.|.|.|.|..|.
T Consensus       494 ----~~~~i~W~~~g----~~l~---------~~-~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  545 (642)
T 1e07_A          494 ----QNTTYLWWVNG----QSLP---------VS-PRLQLS---NGNRTLTLFNVTRNDARAYVCGIQNSVSA  545 (642)
T ss_pred             ----CCcEEEEEECC----EeCC---------CC-CcEEEc---CCCcEEEEeecChhcCceEEEEeEcCCCC
Confidence                12356775321    1111         00 001111   23457899999999999999999999985

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.94  E-value=1.5e-25  Score=257.84  Aligned_cols=314  Identities=20%  Similarity=0.221  Sum_probs=214.7

Q ss_pred             hhhhhhhcc-cccCcceEEEeeecccccccccceeeeccCCCCCCCCCc-ccCCCCCCCCCeeEEEEeCCCCCCCcCeeE
Q psy8139         305 QAKKTADNQ-FENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQ-LLPDSPSLDRDVFTIRWEPPEYDGGSPVLG  382 (1101)
Q Consensus       305 ~~~l~i~~~-~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~-~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~  382 (1101)
                      .+.|.|.+. ...|+|.|+|.|.|..|...+....+.+...+..+..+. .+   .......+.|.|.++.   +.+...
T Consensus        61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~---~v~~G~~~~l~C~~~~---~~~~~~  134 (384)
T 3kld_A           61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTV---SVRRGQGMVLLCGPPP---HSGELS  134 (384)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCE---EEEETCCEEECCCCCS---EESCEE
T ss_pred             CCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCce---eEEcCCCeEEecCCCC---CCCCeE
Confidence            456777776 778999999999999888766655554433222211111 00   0112334455554331   111111


Q ss_pred             EEEEEEe---cCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEec-cCCCCCCee-ee
Q psy8139         383 YLVEHRR---TGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ-RSPAAAPSF-IR  457 (1101)
Q Consensus       383 Y~v~~~~---~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~-~~~~~~P~~-~~  457 (1101)
                      |......   .......    .....+.|.|.++++.|.|.|+|.|.|..|..........+.+... .....+|.+ ..
T Consensus       135 ~~W~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~  210 (384)
T 3kld_A          135 YAWIFNEYPSYQDNRRF----VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQ  210 (384)
T ss_dssp             EEEEETTEECCCSSSEE----ECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEE
T ss_pred             EEEEECCCCCEeeccEE----EEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeec
Confidence            1111100   0000001    1123467999999999999999999998875422111122222211 111123333 34


Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECC-EEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .|..+.+..|+++.|.|.+.|.|.|.+.|++++ ..+....  ...  .....|.|.++...|+|.|+|.|.|..|....
T Consensus       211 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  286 (384)
T 3kld_A          211 FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--RRH--KSNGILEIPNFQQEDAGSYECVAENSRGKNVA  286 (384)
T ss_dssp             CCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--EEC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--eec--CCCcEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            466778899999999999999999999999954 3443321  111  22348999999999999999999999999988


Q ss_pred             EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCC
Q psy8139         537 KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR  616 (1101)
Q Consensus       537 s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~  616 (1101)
                      ...|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.|.+.|+++|.++....++.+.    .++|.|.++...|.
T Consensus       287 ~~~l~v~~~P~~~~~~~---~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----~~~L~i~~v~~~D~  359 (384)
T 3kld_A          287 KGQLTFYAQPNWVQIIN---DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDA  359 (384)
T ss_dssp             EEEEEEEEEEEEEECCC---CEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE----TTEEEESSCCGGGC
T ss_pred             EEEEEEecCCccccCCC---ceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe----CCEEEEeecChhhC
Confidence            89999998887765443   457888999999999999999999999999999776666553    45899999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEe
Q psy8139         617 GEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       617 y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      |.|+|.|.|..|....++.|.|.
T Consensus       360 G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          360 GMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCceEEeceEEEEe
Confidence            99999999999999999888875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.93  E-value=3.2e-25  Score=257.25  Aligned_cols=317  Identities=19%  Similarity=0.264  Sum_probs=223.1

Q ss_pred             hhhhhhhcc-----cccCcceEEEeeecc-cccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCc
Q psy8139         305 QAKKTADNQ-----FENQAPLYVRLEEAI-TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  378 (1101)
Q Consensus       305 ~~~l~i~~~-----~~~d~g~Y~c~a~n~-~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~  378 (1101)
                      .+.|.|.++     ...|+|.|.|.+.+. .|...+..+.+.+..+|.....+..+.   ......++|.|....    .
T Consensus        76 ~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~---~~~G~~v~l~C~~~~----~  148 (403)
T 3laf_A           76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT---AFMGDTVLLKCEVIG----D  148 (403)
T ss_dssp             TSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEE---EETTSCEEECCCEEC----S
T ss_pred             CCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEE---EEcCCeEEEEEEEcc----c
Confidence            455667666     677999999999754 343334446666655443322222210   122445556554421    1


Q ss_pred             CeeEEEEEEEecCCCceE---EcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCC--CCC
Q psy8139         379 PVLGYLVEHRRTGSPYWV---RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA--AAP  453 (1101)
Q Consensus       379 ~i~~Y~v~~~~~~~~~w~---~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~--~~P  453 (1101)
                      +...  +.|...+...-.   ...........|.|.++++.|.|.|+|.|.|..|....    ..+.+.+...+.  .++
T Consensus       149 p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~----~~~~l~v~~~p~~~~~~  222 (403)
T 3laf_A          149 PMPT--IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTG----NEAEVRILSDPGLHRQL  222 (403)
T ss_dssp             SCCE--EEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBC----CCEEEEEECCCCCCEEE
T ss_pred             CCCe--EEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceec----cceeEEEecCCCcccCc
Confidence            1111  111111110000   00001123467999999999999999999998765322    234444433222  233


Q ss_pred             eeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .+...+.+..+..|++++|.|.+.+.|.+.+.|++++..+...........+.  .|.|.++...|+|.|+|.|.|..|.
T Consensus       223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~  300 (403)
T 3laf_A          223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNEN  300 (403)
T ss_dssp             EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTT--EEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             eEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCcc--EEEEeCCCHHHCEEEEEEEEcCCCc
Confidence            45667788889999999999999999999999999999886544333333333  8999999999999999999999999


Q ss_pred             eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCC
Q psy8139         534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR  613 (1101)
Q Consensus       534 ~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~  613 (1101)
                      ...+..|.|..+|.+...+.   ...+..|..+.|.|.+.|.|.+.+.|+++|..+..+..+.+..   ...|.|.++..
T Consensus       301 ~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---~~~L~i~~v~~  374 (403)
T 3laf_A          301 ISASAELTVLVPPWFLNHPS---NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVK  374 (403)
T ss_dssp             EEEEEEEEEEEEEEEEECCC---CEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEET---TTEEEESSCCG
T ss_pred             eEEEEEEEEECCCcEeecCc---ceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEec---CccEEEecccc
Confidence            88899999998887765553   3467789999999999999999999999999987766655542   46799999999


Q ss_pred             CCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         614 ADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      .|.|.|+|.|.|..|....+..|.|..+|
T Consensus       375 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          375 SDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            99999999999999999999999887654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.93  E-value=1.9e-24  Score=274.78  Aligned_cols=389  Identities=17%  Similarity=0.219  Sum_probs=273.3

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      .+.|.|.++...|+|.|.|.+.|..|.. +....+.+..+|.....|....   ......++|.|...    +.+     
T Consensus       305 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~---v~~G~~v~l~C~~~----g~p-----  371 (816)
T 3dmk_A          305 SGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQT---VDFGRPAVFTCQYT----GNP-----  371 (816)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECEEEEEEEESSEEE---CCTTSCEEEEEEEE----EEC-----
T ss_pred             cceEEECCCCHhHCEEEEEEEEcCCCce-EEEEEEEEcCCCceeeCCCceE---ecCCCCEEEEEEEe----ccC-----
Confidence            4679999999999999999998887754 3334555544433222222211   12345567777543    111     


Q ss_pred             EEEEecCCCceEEcCccc-cccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeE
Q psy8139         385 VEHRRTGSPYWVRASPHM-VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT  463 (1101)
Q Consensus       385 v~~~~~~~~~w~~~~~~~-~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~  463 (1101)
                           .....|.+.+... .....|.|.+++..|.|.|+|.|.|..|....+     ..+.+. ....+|.+...+.+..
T Consensus       372 -----~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-----~~l~v~-~~~~~p~i~~~~~~~~  440 (816)
T 3dmk_A          372 -----IKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEAS-----AELKLG-GRFDPPVIRQAFQEET  440 (816)
T ss_dssp             -----CCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEC-----CEEECC-CSSCCCEEEEECCCEE
T ss_pred             -----CCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE-----EEEEEc-cccCCCceEecCcceE
Confidence                 1122355444322 234689999999999999999999988754322     333332 1246788888888889


Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEe----c-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT----D-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~----~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      +..|+++.|.|.+.|.|.+.++|+++|..+.....+....    . ...+.|.|.++...|+|.|+|.|.|..|....++
T Consensus       441 v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  520 (816)
T 3dmk_A          441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA  520 (816)
T ss_dssp             ECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             EcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEE
Confidence            9999999999999999999999999999987766554321    1 2235799999999999999999999999998899


Q ss_pred             EEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCC-CCCCe
Q psy8139         539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR-RADRG  617 (1101)
Q Consensus       539 ~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~-~~~~y  617 (1101)
                      .|.|..+|.+...    ....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+..   +++|.|.++. ..|.|
T Consensus       521 ~l~V~~~p~~~~~----~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~---~~~l~i~~v~~~~d~G  593 (816)
T 3dmk_A          521 KLNVYGLPYIRQM----EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP---NGTLIIENVERNSDQA  593 (816)
T ss_dssp             EEEECSSCEECCC----CCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECT---TSEEEESSCCHHHHCE
T ss_pred             EEEEecCCeeEcc----CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEec---CCeEEEEecCccccCE
Confidence            9999988866433    23467889999999999999999999999999987666555442   4579999998 68999


Q ss_pred             EEEEEEEeCCCCc-eeEEEEEEecCCCCCC--ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccC
Q psy8139         618 EYQAHGVNSLGED-VASFLVTVTDRPLPPG--KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLP  694 (1101)
Q Consensus       618 ~y~c~A~N~~G~~-~~s~~l~v~~~P~~P~--~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~  694 (1101)
                      .|+|.|.|..|.. .....+.+..+|....  ........+..++|.|.....                           
T Consensus       594 ~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~---------------------------  646 (816)
T 3dmk_A          594 TYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG---------------------------  646 (816)
T ss_dssp             EEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCS---------------------------
T ss_pred             EEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCC---------------------------
Confidence            9999999999964 3456677766553211  111234568899999986431                           


Q ss_pred             CCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         695 DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       695 ~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                            +..+.+.|....    .++.         ....+... ........++|.++.+...+.|+|.|.|..|..
T Consensus       647 ------~~~~~i~W~~~g----~~l~---------~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  703 (816)
T 3dmk_A          647 ------DLPLNIDWTLDG----QAIS---------EDLGITTS-RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ  703 (816)
T ss_dssp             ------SSCCEEEEEETT----BCCC---------GGGTCEEE-EETTTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             ------CCCCEEEEEECC----eEcC---------CCCCeeEE-EcCCCeeEEEEccCChhhCEEEEEEEEeCCccE
Confidence                  112356786521    1110         00011110 111234678999999999999999999999974

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.93  E-value=9.9e-25  Score=251.10  Aligned_cols=314  Identities=22%  Similarity=0.242  Sum_probs=222.4

Q ss_pred             hhhhhhhcccc-cCcceEEEeeecccccccccceeeeccCCCCCCCCC-cccCCCCCCCCCeeEEEEeCCCCCCCcCeeE
Q psy8139         305 QAKKTADNQFE-NQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKP-QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG  382 (1101)
Q Consensus       305 ~~~l~i~~~~~-~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p-~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~  382 (1101)
                      .+.|.|.++.. .|+|.|.|.+.|..|...+....+.+..+|..+..+ ..+   .......++|.|..+.   +.+...
T Consensus        60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~---~v~~G~~v~l~C~~~~---~~p~~~  133 (382)
T 1cs6_A           60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPV---KITEGWGVMFTCSPPP---HYPALS  133 (382)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCE---EEETTSCEEECCCCCS---EESCCE
T ss_pred             CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCce---EEecCCcEEEEeCCCC---CCCCcE
Confidence            45788999887 999999999999888766655555554433322211 110   0122445666665431   111112


Q ss_pred             EEEEEEecCCCceE-EcCc--cccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc--CCCCCCeeee
Q psy8139         383 YLVEHRRTGSPYWV-RASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR--SPAAAPSFIR  457 (1101)
Q Consensus       383 Y~v~~~~~~~~~w~-~~~~--~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~--~~~~~P~~~~  457 (1101)
                      +.  |...+..... ....  .......|.|.++++.|.|.|+|.|.|..|....+..+..+.+.+..  ....+|.+..
T Consensus       134 i~--W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~  211 (382)
T 1cs6_A          134 YR--WLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA  211 (382)
T ss_dssp             EE--EEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEE
T ss_pred             EE--EEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceec
Confidence            22  2111111000 0000  01233679999999999999999999988654332223334444332  1223455544


Q ss_pred             -cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         458 -ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       458 -~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                       .|....+..|+.++|.|.+.|.|.+.+.|++++..+...      .......|.|.++...|+|.|+|.|.|..|....
T Consensus       212 ~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  285 (382)
T 1cs6_A          212 KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY  285 (382)
T ss_dssp             CCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEE
Confidence             466788999999999999999999999999987654321      1123348999999999999999999999999888


Q ss_pred             EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCC
Q psy8139         537 KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR  616 (1101)
Q Consensus       537 s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~  616 (1101)
                      ...|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+.    .+.|.|.++...|.
T Consensus       286 ~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~~L~i~~v~~~d~  358 (382)
T 1cs6_A          286 QGRIIIHAQPDWLDVIT---DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDS  358 (382)
T ss_dssp             EEEEEEEEEEEEEECCC---CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGC
T ss_pred             EEEEEEecCCCcccCCC---ccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CCEEEECcCCcccC
Confidence            89999998888765443   457888999999999999999999999999999877666553    45899999999999


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEe
Q psy8139         617 GEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       617 y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      |.|+|.|.|..|....+..|.|.
T Consensus       359 G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          359 GMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEe
Confidence            99999999999999888888875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.92  E-value=4.2e-23  Score=262.48  Aligned_cols=388  Identities=19%  Similarity=0.207  Sum_probs=260.4

Q ss_pred             hhhhhhhhcccccCc-ceEEEeeeccccccc--ccc-eeeeccCCCCCCCCCcccCC-----CCCCCCCeeEEEEeCCCC
Q psy8139         304 KQAKKTADNQFENQA-PLYVRLEEAITGLNV--GTD-LYCVIKKPPGPPGKPQLLPD-----SPSLDRDVFTIRWEPPEY  374 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~-g~Y~c~a~n~~G~~~--s~~-~~~~v~~~p~~P~~p~~l~~-----~~~~~~~sv~l~W~~p~~  374 (1101)
                      ..+.|.|.++..+|+ |.|.|.+.+..+...  +.. ..+.+..+ .....|.+...     ........++|.|...  
T Consensus       197 ~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~-~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--  273 (816)
T 3dmk_A          197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP-ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--  273 (816)
T ss_dssp             TTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECC-CSCCCCBCCGGGGEEEEEECTTSCEEECCCCB--
T ss_pred             cCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCC-CCCCCCccccccCccceEEeCCCeEEEEEEee--
Confidence            356799999999999 999999975432211  111 23333322 22222222100     0012345666666653  


Q ss_pred             CCCcCeeEEEEEEEecCCCceEEc---CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCC
Q psy8139         375 DGGSPVLGYLVEHRRTGSPYWVRA---SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA  451 (1101)
Q Consensus       375 ~g~~~i~~Y~v~~~~~~~~~w~~~---~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~  451 (1101)
                        |.+...+.......+.......   ........+|.|.+++..|+|.|+|.|.|..|...     ..+.+.+.    .
T Consensus       274 --g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~----~  342 (816)
T 3dmk_A          274 --GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES-----VETVLTVT----A  342 (816)
T ss_dssp             --CSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEE-----EEEEEEEC----E
T ss_pred             --ecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceE-----EEEEEEEc----C
Confidence              1122222222111111000000   00111346899999999999999999999887542     22344443    4


Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +|.+...|....+..|+++.|.|.+.|.|.+.++|+++|..+...          ...|.|.++...|+|.|+|.|.|..
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~  412 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRNDR  412 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC----------CCEEEEcCCCHHHCEEEEEEEECCC
Confidence            556667788888999999999999999999999999999887542          2379999999999999999999999


Q ss_pred             CceEEEEEEeec---cCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe-----ecce
Q psy8139         532 GHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-----TDRY  603 (1101)
Q Consensus       532 g~~~~s~~l~V~---~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~  603 (1101)
                      |....+..+.|.   .+|.+...+   ....+..|..+.|.|.+.|.|.+.+.|+++|..+..+..+....     ....
T Consensus       413 g~~~~~~~l~v~~~~~~p~i~~~~---~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~  489 (816)
T 3dmk_A          413 ESAEASAELKLGGRFDPPVIRQAF---QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV  489 (816)
T ss_dssp             CEEEECCEEECCCSSCCCEEEEEC---CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEE
T ss_pred             CcEEEEEEEEEccccCCCceEecC---cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcE
Confidence            987777777774   355554332   23477889999999999999999999999999988766654321     1224


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRP  683 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~  683 (1101)
                      ..|.|.++...|.|.|+|.|.|..|....+..+.|..+|............+..+.|.|.....                
T Consensus       490 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~----------------  553 (816)
T 3dmk_A          490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGY----------------  553 (816)
T ss_dssp             EEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECS----------------
T ss_pred             EEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCC----------------
Confidence            5799999999999999999999999988899999988773322223445678889999975321                


Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCC-CCceEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE-PGWRYQFRI  762 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~t~Y~~~V  762 (1101)
                                        ....+.|....    ..+          ........    ....++.|.++. ....+.|+|
T Consensus       554 ------------------p~~~i~W~k~~----~~l----------~~~~~~~~----~~~~~l~i~~v~~~~d~G~Y~C  597 (816)
T 3dmk_A          554 ------------------PIDSIVWERDN----RAL----------PINRKQKV----FPNGTLIIENVERNSDQATYTC  597 (816)
T ss_dssp             ------------------SEEEEEEEETT----EES----------CCSTTEEE----CTTSEEEESSCCHHHHCEEEEE
T ss_pred             ------------------CCCEEEEEECC----eEc----------ccCCceEE----ecCCeEEEEecCccccCEEEEE
Confidence                              12356776421    101          00000111    234578899987 688899999


Q ss_pred             EEEcCCcc
Q psy8139         763 TAENVVGF  770 (1101)
Q Consensus       763 ~A~n~~G~  770 (1101)
                      .|.|..|.
T Consensus       598 ~a~n~~g~  605 (816)
T 3dmk_A          598 VAKNQEGY  605 (816)
T ss_dssp             EEEESSSC
T ss_pred             EEEECCCc
Confidence            99999885

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.92  E-value=1.9e-22  Score=246.27  Aligned_cols=399  Identities=12%  Similarity=0.051  Sum_probs=254.8

Q ss_pred             hhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEE
Q psy8139         306 AKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLV  385 (1101)
Q Consensus       306 ~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v  385 (1101)
                      ..|.|.++...|+|.|.|.+.|..|.. +..+.+.+..+|.....|..+.   ......++|.|.....+   +...+  
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~---v~~G~~v~l~C~~~~~~---~~~~v--  145 (585)
T 2ocw_A           75 FVVNIAQLSQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYT---VDLGRTVTINCPFKTEN---AQKRK--  145 (585)
T ss_pred             EEEEECCCCcccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEE---EEcCCCEEEEEEecCCC---CCccE--
Confidence            458999999999999999998776653 4447777777776554444321   12345566666553111   11111  


Q ss_pred             EEEecCCC-----------------ceEEc--CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEec
Q psy8139         386 EHRRTGSP-----------------YWVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ  446 (1101)
Q Consensus       386 ~~~~~~~~-----------------~w~~~--~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~  446 (1101)
                      .|...+..                 .....  ........+|.|.+++..|.|.|+|.|.|..|...     ..+.+.+.
T Consensus       146 ~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~  220 (585)
T 2ocw_A          146 SLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK-----KNADLQVL  220 (585)
T ss_pred             EEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc-----ceEEEEEc
Confidence            11111110                 00000  00000112799999999999999999999877543     23455443


Q ss_pred             cCCCCCCeeeecCceeEEccCCeEEEEEEEeccCC---CeEEEE-ECCE---Eeec---------CCcEEEEec--CCee
Q psy8139         447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT---PKVSWY-KDGF---EIFS---------SRRQRIVTD--NDIS  508 (1101)
Q Consensus       447 ~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~---~~v~W~-~~g~---~~~~---------~~~~~~~~~--~~~~  508 (1101)
                      .   .+      |..+.+..|+.+.|.|.+ +.|.   +.+.|+ ++|.   .+..         ..++.+...  .+..
T Consensus       221 ~---~~------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  290 (585)
T 2ocw_A          221 K---PE------PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF  290 (585)
T ss_pred             c---CC------CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEE
Confidence            2   12      344567899999999997 4444   678897 7773   1211         233333322  3334


Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceE----EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCee----
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSI----TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA----  580 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~----~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v----  580 (1101)
                      .|.|.++...|+|.|+|.|.|..+...    ..+.|.|..+|.+...+   ....+..|+.+.|.|.+.+.|.+.+    
T Consensus       291 ~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~---~~~~~~~G~~v~l~C~~~~~p~p~i~~w~  367 (585)
T 2ocw_A          291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSP---TVVKGVAGSSVAVLCPYNRKESKSIKYWC  367 (585)
T ss_pred             EEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCC---cceEEEeCCcEEEEEecCCCCCccEEEEE
Confidence            799999999999999999999533332    67789999888776554   3457889999999999999999877    


Q ss_pred             EEEE--CCe--ecCC---------CCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC-CCC
Q psy8139         581 RWLH--NGE--PLTS---------GGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR-PLP  644 (1101)
Q Consensus       581 ~W~~--~g~--~l~~---------~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~-P~~  644 (1101)
                      .|++  +|.  .+..         ..++.+...  .+..+|.|.++...|.|.|+|.| |..|.......|.|... |..
T Consensus       368 ~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~  446 (585)
T 2ocw_A          368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNL  446 (585)
T ss_pred             EEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcccc
Confidence            7998  776  3321         234444332  22345999999999999999999 99998888888888754 322


Q ss_pred             CCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEE
Q psy8139         645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLV  724 (1101)
Q Consensus       645 P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V  724 (1101)
                      ..........+.++.|+|.......|                              .....|.|...    |.++.    
T Consensus       447 ~~~~~~~v~~G~~v~L~C~~~~~~~~------------------------------~p~~~v~W~k~----g~~~~----  488 (585)
T 2ocw_A          447 KVPGNVTAVLGETLKVPCHFPCKFSS------------------------------YEKYWCKWNNT----GCQAL----  488 (585)
T ss_pred             ccCCceeEecCCcEEEEEEecCCCCC------------------------------CccEEEEEeec----Cceee----
Confidence            22223445677889999986532222                              22346778642    11110    


Q ss_pred             EEEeCCC--CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCC
Q psy8139         725 EHRRTGS--PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       725 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  772 (1101)
                       ......  ..+.... .......++|.++...+...|.|.|.|..|.+.
T Consensus       489 -~~~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  536 (585)
T 2ocw_A          489 -PSQDEGPSKAFVNCD-ENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGE  536 (585)
T ss_pred             -eccCCCCCcceEEec-CcccEEEEEECCCCcccCeEEEEEeEeCCCccE
Confidence             000000  0011111 113346889999999999999999999998644

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.92  E-value=3.6e-24  Score=247.62  Aligned_cols=318  Identities=17%  Similarity=0.228  Sum_probs=222.3

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      ..+.|.|.++...|+|.|.|.+.|..|...+..+.+.+...+.++..|....   ......++|.|..+.   +.+...+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~---~~~G~~v~l~C~~~~---~~p~~~v  133 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKT---PIEGRPFQLDCVLPN---AYPKPLI  133 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEEC---CBTTEEEEECCCCCE---EESCCEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCccee---eeeCCcEEEEecCCC---CCCCCeE
Confidence            4567999999999999999999998887665555555443333333333221   234567788876421   1122222


Q ss_pred             EEEEEecCCC-ceE----EcCccccccceEEEcCccCCccE---EEEEEEEecCCCCCCCCCCcceEEEeccCC------
Q psy8139         384 LVEHRRTGSP-YWV----RASPHMVEDTELMVSGLEPGWRY---QFRITAENVVGFSEPGPLSEPLTVTYQRSP------  449 (1101)
Q Consensus       384 ~v~~~~~~~~-~w~----~~~~~~~~~~~l~i~~L~p~d~y---~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~------  449 (1101)
                      .......+.. ...    ........++.|.|.++++.|.|   .|+|.|.|..|......  ....+......      
T Consensus       134 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~--~~~~~~~~~~~~~~~~~  211 (395)
T 1bih_A          134 TWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL--VEYEIKGVTKDNSGYKG  211 (395)
T ss_dssp             EEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEE--EEEEECCCBCCSSCCCC
T ss_pred             EEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEe--eeEEecccccccccccC
Confidence            2222210000 000    00001123467999999999999   99999999888643210  00111111000      


Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE--ecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV--TDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ..+|.+  .+.+..+..|+.+.|.|.+.|.|.+.+.|+++|..+.......+.  .......|.|.++...|+|.|+|.|
T Consensus       212 ~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  289 (395)
T 1bih_A          212 EPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV  289 (395)
T ss_dssp             CCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEE
T ss_pred             CcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEE
Confidence            112333  356778999999999999999999999999999988654322222  1223348999999999999999999


Q ss_pred             EeCCCceEE-EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139         528 TNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL  606 (1101)
Q Consensus       528 ~n~~g~~~~-s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl  606 (1101)
                      .|..|.... ++.|.|..+|.+...+..  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..+ ++.+.    .+.|
T Consensus       290 ~n~~g~~~~~~~~l~V~~~P~~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~----~~~L  362 (395)
T 1bih_A          290 DNGVGKPQKHSLKLTVVSAPKYEQKPEK--VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT----DSGL  362 (395)
T ss_dssp             CCSSSSCEEEEEEEEEEEEEEEEECCCS--EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE----TTEE
T ss_pred             EeCCCCceEEEEEEEEEcCCccccCCCc--ceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE----CCEE
Confidence            999998766 889999998888765542  257889999999999999999999999999998754 44443    2389


Q ss_pred             EEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       607 ~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.++...|.|.|+|.|.|..|....+..|.|
T Consensus       363 ~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          363 VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            99999999999999999999999888888776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.92  E-value=1.3e-23  Score=243.67  Aligned_cols=321  Identities=21%  Similarity=0.261  Sum_probs=222.5

Q ss_pred             hhhhhhh----cccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCe
Q psy8139         305 QAKKTAD----NQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  380 (1101)
Q Consensus       305 ~~~l~i~----~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i  380 (1101)
                      .+.|.|.    ++...|+|.|.|.+.|..|...+..+.+.+..+|..|..+...  ........++|.|..+.   +.+.
T Consensus        72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~--~~v~~G~~v~l~C~~~~---~~p~  146 (404)
T 3p3y_A           72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP--VVVQEGAPLTLQCNPPP---GLPS  146 (404)
T ss_dssp             SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCC--EEEETTSCEEECCCCCC---CSSC
T ss_pred             CceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCC--eEEccCCcEEEEeCCCC---CCCC
Confidence            3445553    8888999999999999888876666777777766554332110  00123455677776531   1122


Q ss_pred             eEEEEEEEecCCCceEEc-CccccccceEEEcCccCCc-cEEEEEEEEecCCCCCCCCCCcceEEEeccC-CCCCCeeee
Q psy8139         381 LGYLVEHRRTGSPYWVRA-SPHMVEDTELMVSGLEPGW-RYQFRITAENVVGFSEPGPLSEPLTVTYQRS-PAAAPSFIR  457 (1101)
Q Consensus       381 ~~Y~v~~~~~~~~~w~~~-~~~~~~~~~l~i~~L~p~d-~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~-~~~~P~~~~  457 (1101)
                      ..  +.|...+....... ......++.|.|.++...| .|.|+|.|.|..|..........+.+..... ...+|.+..
T Consensus       147 ~~--v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~  224 (404)
T 3p3y_A          147 PV--IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY  224 (404)
T ss_dssp             CE--EEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSS
T ss_pred             Ce--EEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcccc
Confidence            22  22221111000000 0011234679999999999 5999999999887643322222333322111 123344433


Q ss_pred             c---CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         458 A---LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       458 ~---p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      .   +....+..|+++.|.|.+.|.|.+.+.|+++|..+..... .....  ...|.|.++...|+|.|+|.|.|..|..
T Consensus       225 ~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (404)
T 3p3y_A          225 PQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFENF--NKALRITNVSEEDSGEYFCLASNKMGSI  301 (404)
T ss_dssp             SCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEEGG--GTEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             ccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-ccccc--CceEEEccCCHhHCEEEEEEEEeCCCcE
Confidence            2   2456789999999999999999999999999987765443 22222  2389999999999999999999999998


Q ss_pred             EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc-eEEEeecceEEEEEccCCC
Q psy8139         535 ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITHTDRYLNLRISDARR  613 (1101)
Q Consensus       535 ~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~sl~i~~l~~  613 (1101)
                      .....|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..... ......  ..+|.|.++..
T Consensus       302 ~~~~~l~V~~~p~~~~~~~---~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~  376 (404)
T 3p3y_A          302 RHTISVRVKAAPYWLDEPK---NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVA--GDTIIFRDTQI  376 (404)
T ss_dssp             EEEEEEEEEEEEEEEECCC---CEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEE--TTEEEESSCCS
T ss_pred             EEEEEEEEeCCCeeeccCC---cceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEec--CCEEEEeecCH
Confidence            8889999998887765543   45788899999999999999999999999998865431 111111  35899999999


Q ss_pred             CCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         614 ADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      .|.|.|+|.|.|..|....+..|.|.+
T Consensus       377 ~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          377 SSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             SCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             HHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999998888888764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.92  E-value=1.2e-22  Score=222.97  Aligned_cols=223  Identities=27%  Similarity=0.436  Sum_probs=191.8

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC-ceeEEccCCeEEEEEEEeccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL-HDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p-~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ...|.|.+++..|.|.|+|.|.|..|...     ..+.+.+.    .+|.+...+ ....+..|+.+.|.|.+.|.|.+.
T Consensus        60 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~-----~~~~l~V~----~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~  130 (284)
T 2rik_A           60 TATLTVLKVTKGDAGQYTCYASNVAGKDS-----CSAQLGVQ----EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIK  130 (284)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEE----CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCE
T ss_pred             EEEEEEecCCcccCEEEEEEEEECCceEE-----EEEEEEcc----CCCcccccCCCceEecCCceEEEEEEEeeeCCCE
Confidence            46899999999999999999999877532     23444443    456665543 455688999999999999999999


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMG  563 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g  563 (1101)
                      +.|++++..+.....+..........|.|.++...|+|.|+|.|.|..|.......|.|..+|.+...+.   ...+..|
T Consensus       131 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~---~~~~~~g  207 (284)
T 2rik_A          131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH---PVETLKG  207 (284)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCC---CEEECTT
T ss_pred             EEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCC---cceecCC
Confidence            9999999999887777776667778999999999999999999999999988899999999988765543   4577889


Q ss_pred             CEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         564 EIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       564 ~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      ..+.|.|.+.|.|.+.+.|++++..+..+..+.+...+....|.|.++...|.|.|+|.|.|..|.......|.|.
T Consensus       208 ~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             CCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            9999999999999999999999999988888888777777899999999999999999999999998888888775

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.91  E-value=9.2e-24  Score=243.53  Aligned_cols=311  Identities=17%  Similarity=0.225  Sum_probs=214.6

Q ss_pred             hhhhhhhhcccccC------cceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCC
Q psy8139         304 KQAKKTADNQFENQ------APLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG  377 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d------~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~  377 (1101)
                      ..+.|.|.++...|      +|.|+|.|.|..|...+..+.+.+..+|..+..+....   ......++|.|..+...+.
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~---v~~G~~v~l~C~~~~~~~~  133 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH---VIRGNSAVIKCLIPSFVAD  133 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEE---EETTSCEEECCBCCTTTTT
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCcccee---eecCCcEEEEEECcCCCCC
Confidence            45679999999887      99999999999887666667776666555443333211   2234567777766522111


Q ss_pred             cCeeEEEEEEEecCCCceE-----EcCccccccceEEEcCccCCcc-EEEEEEEEecCCCCC-CCCCCcceEEEeccCCC
Q psy8139         378 SPVLGYLVEHRRTGSPYWV-----RASPHMVEDTELMVSGLEPGWR-YQFRITAENVVGFSE-PGPLSEPLTVTYQRSPA  450 (1101)
Q Consensus       378 ~~i~~Y~v~~~~~~~~~w~-----~~~~~~~~~~~l~i~~L~p~d~-y~y~c~A~n~~G~~~-~s~~s~~vtv~~~~~~~  450 (1101)
                       +.  ..+.|...+.....     ........+.+|.|.++++.|. |.|+|.|.|..+... .+.....+.+..... .
T Consensus       134 -~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~-~  209 (388)
T 2v5m_A          134 -FV--EVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS-S  209 (388)
T ss_dssp             -TE--EEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS-C
T ss_pred             -Cc--ceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc-C
Confidence             11  12222222111000     0000112346899999999999 999999999865322 121122344432110 0


Q ss_pred             CCCeee-ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCE------EeecCCcEEEEecCCeeEEEEeecCCCCCEEE
Q psy8139         451 AAPSFI-RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF------EIFSSRRQRIVTDNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       451 ~~P~~~-~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~------~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      .+|.+. .......+..|+.++|.|.+.|.|.+.+.|++++.      .+....+...  .+  ..|.|.++...|+|.|
T Consensus       210 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~--~~L~i~~v~~~d~G~Y  285 (388)
T 2v5m_A          210 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ--VS--GTLIIKDAVVEDSGKY  285 (388)
T ss_dssp             EEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE--ET--TEEEESSCCGGGCEEE
T ss_pred             CCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec--cc--CEEEECcCCHHHCeEE
Confidence            112111 11233567889999999999999999999999642      2222223322  22  2899999999999999


Q ss_pred             EEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecce
Q psy8139         524 KCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY  603 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~  603 (1101)
                      +|.|.|..|.....+.|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..+          .
T Consensus       286 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~---~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~  352 (388)
T 2v5m_A          286 LCVVNNSVGGESVETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------E  352 (388)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEEEEESS---EEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------S
T ss_pred             EEEEecCCCceeEEEEEEEeCCCccccCCC---cEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------C
Confidence            999999999988888999998887655443   457888999999999999999999999999887643          4


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ..|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus       353 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            57999999999999999999999999888888775

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.91  E-value=4.5e-24  Score=254.26  Aligned_cols=298  Identities=13%  Similarity=0.083  Sum_probs=194.1

Q ss_pred             hhhhhhcccccCcceEEEeeecccccccccceeeeccCCC-CCCCCCcc--------cCCCCCCCCCeeEEEEeCCCCCC
Q psy8139         306 AKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPP-GPPGKPQL--------LPDSPSLDRDVFTIRWEPPEYDG  376 (1101)
Q Consensus       306 ~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p-~~P~~p~~--------l~~~~~~~~~sv~l~W~~p~~~g  376 (1101)
                      ..|.|.++...|+|.|+|.+.|..|.... .+.+.+...+ ..|..|..        |.|. ..+....+++|...    
T Consensus       103 ~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~-~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~-a~G~P~P~i~W~~~----  176 (527)
T 3qs9_E          103 VSMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMENQDALVCI-SESVPEPIVEWVLC----  176 (527)
T ss_dssp             EEEEESSCCSSSCSEEEEEEEC--CEEEE-EEEEEEC-----CEEEEEEEECSSSSCEEEE-EEESSCCEEEEEEC----
T ss_pred             EEEEECcCChhhCeeEEEEEEeccccEEE-EEEEEECCceeeccCCCcEEecCCceEEEEE-EceecCCeEEEEEC----
Confidence            34999999999999999999887664321 2333332111 11122222        2222 22222333333321    


Q ss_pred             CcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeee
Q psy8139         377 GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI  456 (1101)
Q Consensus       377 ~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~  456 (1101)
                      +.++..+.               .............+.+.|.|.|+|.|.|..|....    ..+++.+.    .+|.+ 
T Consensus       177 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~----~~~~l~V~----~~p~~-  232 (527)
T 3qs9_E          177 DSQGESCK---------------EESPAVVKKEEKVLHELFGTDIRCCARNELGRECT----RLFTIDLN----QTPQT-  232 (527)
T ss_dssp             ----------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEE----ECEEEESS----SCCCC-
T ss_pred             CCCCcccc---------------ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccc----eEEEEEEe----ccCcc-
Confidence            00110000               00000112223446689999999999999886532    23455544    23333 


Q ss_pred             ecCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEe--c----CCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         457 RALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVT--D----NDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~--~----~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                       .|.+..+..|+++.|.|.+. |.|.+.++|++++..+.....+....  .    ....+|.|.++...|+|.|+|.|.|
T Consensus       233 -~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N  311 (527)
T 3qs9_E          233 -TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (527)
T ss_dssp             -SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETT
T ss_pred             -CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEe
Confidence             45678899999999999996 99999999999998765543222111  1    1124699999999999999999998


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                      .   ...++.|.|..+|.+...+.. ....+..|+.+.|.|.+.|.|.|.+.|+++|..+.....+.    ....+|.|.
T Consensus       312 ~---~~~~~~L~V~~~p~i~~~~~~-~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~  383 (527)
T 3qs9_E          312 H---PSQSALVTIVEKGFINATNSS-EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKF  383 (527)
T ss_dssp             E---EEEEEEEEEC--CEEECCCSC-CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEE
T ss_pred             C---CCceEEEEEEccCccccccCc-ccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEe
Confidence            7   566788899888876554432 23456789999999999999999999999999886544321    135679999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         610 DARRADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      ++...|.|.|+|.|.|..|....++.|.|..+|
T Consensus       384 ~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P  416 (527)
T 3qs9_E          384 CNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP  416 (527)
T ss_dssp             CCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred             cCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence            999999999999999999988888888887555

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.91  E-value=2.6e-22  Score=222.55  Aligned_cols=260  Identities=16%  Similarity=0.215  Sum_probs=186.2

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-------CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-------p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ...|.+..+..|++++|.|.+.+.       |.+.|.|.++|..+... ++.+. ++..+.|+|.++... .|.|+|.|.
T Consensus         8 ~i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~-~g~Y~C~a~   84 (303)
T 1i1r_A            8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASL-NIQLTCNIL   84 (303)
T ss_dssp             EEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCS-EEEEEEEEE
T ss_pred             eEccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCC-ceEEEEecc
Confidence            346778889999999999999864       78899999999988654 34433 344668999999988 499999998


Q ss_pred             eCCCceE---EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe------
Q psy8139         529 NRAGHSI---TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH------  599 (1101)
Q Consensus       529 n~~g~~~---~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~------  599 (1101)
                      +. |...   ....+.+..+|                +.+..+.|...+.....++|........ ...|.+..      
T Consensus        85 ~~-g~~~~~~~~~~l~v~~~P----------------~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~~~Y~v~~~~~~~~  146 (303)
T 1i1r_A           85 TF-GQLEQNVYGITIISGLPP----------------EKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHK  146 (303)
T ss_dssp             ET-TTEEEEEEEEEEEEECCC----------------CCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEE
T ss_pred             cC-CCcceEEEEEEEeccCCC----------------CCCeeeEEEECCCCcEEEEccCCCCCCC-CcCEEEEEEecCCC
Confidence            84 4332   23445555554                3345577888777788899986432211 12333322      


Q ss_pred             -------ecceEEEEEccC-CCCCCeEEEEEEEeCCCCceeE-EEEEEe--cCCCCCCccEEEEe--cCCeEEEEeecCC
Q psy8139         600 -------TDRYLNLRISDA-RRADRGEYQAHGVNSLGEDVAS-FLVTVT--DRPLPPGKAKVVMT--LGKSVTLSWSEPE  666 (1101)
Q Consensus       600 -------~~~~~sl~i~~l-~~~~~y~y~c~A~N~~G~~~~s-~~l~v~--~~P~~P~~~~~~~~--~~~sv~lsW~~p~  666 (1101)
                             .+...++.|.+| .+...|.|+|.|.|..|.+.++ ..+...  .+|.||.++.+...  +.+++.|+|+   
T Consensus       147 ~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~---  223 (303)
T 1i1r_A          147 FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT---  223 (303)
T ss_dssp             CCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEE---
T ss_pred             CccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEEC---
Confidence                   122467899999 8999999999999999986532 222111  35777776665432  3345555555   


Q ss_pred             CCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccc--ccCc
Q psy8139         667 DDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH--MVED  744 (1101)
Q Consensus       667 ~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~--~~~~  744 (1101)
                                                                 +|... ++++.+|.|+|+..++..|..+...  ....
T Consensus       224 -------------------------------------------~p~~~-~~~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~  259 (303)
T 1i1r_A          224 -------------------------------------------NPSIK-SVIILKYNIQYRTKDASTWSQIPPEDTASTR  259 (303)
T ss_dssp             -------------------------------------------CCGGG-GTSCEEEEEEEEETTCSSCEECCGGGGCSCC
T ss_pred             -------------------------------------------CCCCC-CcccEEEEEEEEeCCCCCceEEccccCCCce
Confidence                                                       44332 3468999999999888889876431  3567


Q ss_pred             cEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       745 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      ++++|.+|.|++.|.|+|+|.|..|.|++|+++..++..
T Consensus       260 ~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~  298 (303)
T 1i1r_A          260 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI  298 (303)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEE
T ss_pred             eEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCcccee
Confidence            899999999999999999999999999999999877765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=6e-22  Score=238.06  Aligned_cols=347  Identities=12%  Similarity=0.112  Sum_probs=209.9

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccc--cccceeeeccCCCCCCCCCcccCCC-CCCCCCeeEEEEeCCCCCCCcCee
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLN--VGTDLYCVIKKPPGPPGKPQLLPDS-PSLDRDVFTIRWEPPEYDGGSPVL  381 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~--~s~~~~~~v~~~p~~P~~p~~l~~~-~~~~~~sv~l~W~~p~~~g~~~i~  381 (1101)
                      .+.|.|.++..+|+|.|+|.+.|..|..  .+....+.|...+..|+........ .......++|.|....   . +..
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g---~-~p~  144 (523)
T 2rcj_C           69 SASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISD---F-YPG  144 (523)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEecc---c-cCC
Confidence            3469999999999999999998876532  2334555554332222111110000 0112345666665541   1 110


Q ss_pred             EEEEEEEecCCCc---eEEc------CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCC
Q psy8139         382 GYLVEHRRTGSPY---WVRA------SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA  452 (1101)
Q Consensus       382 ~Y~v~~~~~~~~~---w~~~------~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~  452 (1101)
                      ...+.|...+...   ....      .........|.|.++...|.|.|+|.|.|..|....     .+.+.+...+..+
T Consensus       145 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~-----~~~~~~~~~~~~~  219 (523)
T 2rcj_C          145 AVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK-----TVAPTECSASTKG  219 (523)
T ss_pred             ceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccc-----ceeeeecCCCCcC
Confidence            1122222211100   0000      000001136899999999999999999998775432     1222222233456


Q ss_pred             CeeeecCceeEEccCCeEEEEEEEecc-CCC-eEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEE
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      |.+...+....+..|+.+.|.|.+.|. |.| .|+|+++|..+...........++    .+.|.|.++...| |.|+|.
T Consensus       220 P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~  298 (523)
T 2rcj_C          220 PSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICN  298 (523)
T ss_pred             CEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEE
Confidence            666544444567899999999999886 877 899999997653211111111112    3489999999999 999999


Q ss_pred             EEeCCCceEEEEEEeeccCCccc-cCCCCCCCeEEeeCCEEEEEEEEeecCC----CeeEEEECCeecCCCCceEEE-e-
Q psy8139         527 ATNRAGHSITKARLRLEAPPTIR-LPKQYEDGLLFEMGEIIKLKVSMAGMPP----PTARWLHNGEPLTSGGRYEIT-H-  599 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V~~~p~~~-~~~~~~~~~~v~~g~~~~l~c~~~g~p~----~~v~W~~~g~~l~~~~~~~~~-~-  599 (1101)
                      |.|..|.......|.|...|.+. .++...  ..+..|+.+.|.|.+.|.++    +.+.|+++|..+......... . 
T Consensus       299 a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~--~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~  376 (523)
T 2rcj_C          299 VNHKPSNTKVDKRVEPLSLPSVFLFPPKPK--DTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQY  376 (523)
T ss_pred             EEeCCCCcceEEecCCCcCceEEecCCCch--hhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecC
Confidence            99999987777777776656542 222211  12677999999999998653    599999999988654322111 1 


Q ss_pred             ec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe-cCCCCCCccEE-----EEecCCeEEEEeec
Q psy8139         600 TD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT-DRPLPPGKAKV-----VMTLGKSVTLSWSE  664 (1101)
Q Consensus       600 ~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~-~~P~~P~~~~~-----~~~~~~sv~lsW~~  664 (1101)
                      .+   ..+.|.|.++...|.|.|+|.|.|..|.......+.+. ....+|. +.+     ..+.+..++|.|..
T Consensus       377 ~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~-v~~~~~~~~~~~~~~~~l~C~~  449 (523)
T 2rcj_C          377 NSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ-VYTLPPSREEMTKNQVSLTCLV  449 (523)
T ss_pred             CCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCE-EEEeCCChHHccCCceEEEEEE
Confidence            11   13468899999999999999999988876555445431 1222231 111     11223448888885

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.90  E-value=5e-21  Score=218.80  Aligned_cols=349  Identities=15%  Similarity=0.101  Sum_probs=217.8

Q ss_pred             CCCCCcccCCCCCCCCC-eeEEEEeCCCCCCCcCeeEEEEEEEecCCCc---eEEcCccccccceEEEcCccCCccEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRD-VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~-sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      ||++|..+.+. ..+.+ ++.|+|.+|.   +..+.+|.|++...++..   |...  ......+++|.+|.|++.|.|+
T Consensus         1 Pp~~P~~l~~~-~~~~~~sv~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~   74 (368)
T 1fnf_A            1 PLSPPTNLHLE-ANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEV--VHADQSSCTFDNLSPGLEYNVS   74 (368)
T ss_dssp             CCCCCEEEEEE-ECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEE--ECTTCCEEECCCCCTTSCEEEE
T ss_pred             CCCCCcceEEE-ecCCCcEEEEEEeCCC---CCCceEEEEEEEECCCCCCceeEEE--ecCCcCEEEECCCCCCCEEEEE
Confidence            34555555544 55555 6999999984   347999999998765532   3322  2235578999999999999999


Q ss_pred             EEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEc--cCCeEEEEEEEeccCCC---eEEEEECCEEeecCC
Q psy8139         423 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL--EDEKVEFTVQVEGIPTP---KVSWYKDGFEIFSSR  497 (1101)
Q Consensus       423 c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~--~g~~v~L~C~~~g~p~~---~v~W~~~g~~~~~~~  497 (1101)
                      |.|.|..|.+.+.      ...+...++       .|.++.+.  ....+.|.+........   .|.|...+.   ...
T Consensus        75 V~a~~~~g~s~~~------~~~~~~~~~-------~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~~~~---~~~  138 (368)
T 1fnf_A           75 VYTVKDDKESVPI------SDTIIPAVP-------PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKN---EED  138 (368)
T ss_dssp             EEEEETTEECCCE------EEEECCCCC-------CCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEETTC---TTC
T ss_pred             EEEEcCCCccCce------eeeecCCCc-------CCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEECCC---CCc
Confidence            9999998876542      222222211       23444443  34456666655422111   344543221   111


Q ss_pred             cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEe--eCCEEEEEEEEeec
Q psy8139         498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFE--MGEIIKLKVSMAGM  575 (1101)
Q Consensus       498 ~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~--~g~~~~l~c~~~g~  575 (1101)
                      ...+........+.+.+|.++..|.|.+.|.|..|.+.... .....+|.      .+..+.+.  ....+.|.+.....
T Consensus       139 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~~~~~------~P~~l~~~~~~~~sv~l~W~~p~~  211 (368)
T 1fnf_A          139 VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKTGLD------SPTGIDFSDITANSFTVHWIAPRA  211 (368)
T ss_dssp             CEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECCCC------CCEEEEEESCCSSEEEEEEECCSS
T ss_pred             cEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE-eeecCCCC------CCCccEEEEccCCEEEEEEeCCCC
Confidence            22333344556899999999999999999999988654322 12222211      11111221  12233333332211


Q ss_pred             CC--CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEe
Q psy8139         576 PP--PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMT  653 (1101)
Q Consensus       576 p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~  653 (1101)
                      +.  -.|.|...+.   .+.............+.+.+|.++..|.|++.|.|..|.+..+. .....+|.+|.++.+...
T Consensus       212 ~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~~t~p~~P~~l~~~~~  287 (368)
T 1fnf_A          212 TITGYRIRHHPEHF---SGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQSTVSDVPRDLEVVAA  287 (368)
T ss_dssp             CCSEEEEEEECSCC---SSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEECCCCSCEEEEEEEE
T ss_pred             CcCEEEEEEecCCC---CCCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccccCCCCCCCeeEEEec
Confidence            10  1222222111   01112233344567899999999999999999999998766543 446678899989888888


Q ss_pred             cCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC
Q psy8139         654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY  733 (1101)
Q Consensus       654 ~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~  733 (1101)
                      +.+++.|+|++|..                                                  ++.+|.|.|...++..
T Consensus       288 ~~~sv~l~W~~p~~--------------------------------------------------~i~~Y~v~~~~~~~~~  317 (368)
T 1fnf_A          288 TPTSLLISWDAPAV--------------------------------------------------TVRYYRITYGETGGNS  317 (368)
T ss_dssp             ETTEEEEEEECCSS--------------------------------------------------CCSEEEEEEEETTCCS
T ss_pred             CCCEEEEEeeCCCC--------------------------------------------------ccceEEEEEEECCCCC
Confidence            88888888886531                                                  3677888877765533


Q ss_pred             ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCC
Q psy8139         734 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  778 (1101)
Q Consensus       734 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~  778 (1101)
                      +..........+.+++.+|.|++.|.|+|.|.|..|.|++|....
T Consensus       318 ~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~  362 (368)
T 1fnf_A          318 PVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPI  362 (368)
T ss_dssp             CCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCCE
T ss_pred             ccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCcee
Confidence            222222235778999999999999999999999999998875443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=244.39  Aligned_cols=304  Identities=12%  Similarity=0.077  Sum_probs=186.4

Q ss_pred             hhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCC-CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         306 AKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGP-PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       306 ~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~-P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      ..|.|.++...|+|.|+|.|.|..|... ..+.+.|..+|.. |..|..+     .....++|.|...    |.|..   
T Consensus       103 ~sL~I~~v~~~D~G~Y~C~a~N~~g~~~-~~~~l~V~~~p~~~~~~p~~~-----~~~~~~~L~C~a~----G~P~P---  169 (423)
T 3qs7_E          103 VSMVILKMTETQAGEYLLFIQSEATNYT-ILFTVSIRNTLLYTLRRPYFR-----KMENQDALVCISE----SVPEP---  169 (423)
T ss_dssp             EEEEESSCCSSSCSEEEEEEEC--CEEE-EEEEEEEC-----CEEEEEEE-----ECSSSSCEEEEEE----ESSCC---
T ss_pred             EEEEEeecCcccCEEEEEEEEcCCCcEE-EEEEEEEecCccccccCCcEe-----ccCCceEEEEEEe----eecCC---
Confidence            4589999999999999999998877643 2355555533322 1222221     0122233344332    11111   


Q ss_pred             EEEEecCCCceEEcCccc------cccceEEE-cCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeee
Q psy8139         385 VEHRRTGSPYWVRASPHM------VEDTELMV-SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR  457 (1101)
Q Consensus       385 v~~~~~~~~~w~~~~~~~------~~~~~l~i-~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~  457 (1101)
                             ...|.+.+...      ........ .-+...|.|.|+|.|.|..|....    ..+.+.+...    |.+  
T Consensus       170 -------~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~----~~~~l~V~~~----p~~--  232 (423)
T 3qs7_E          170 -------IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECT----RLFTIDLNQT----PQT--  232 (423)
T ss_dssp             -------EEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEE----ECEEEESSSC----CCS--
T ss_pred             -------eEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcce----eeEEEEEecC----Ccc--
Confidence                   11122211100      00000000 112578999999999999886432    2355555432    222  


Q ss_pred             cCceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEE--Eec----CCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRI--VTD----NDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~--~~~----~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+.+..+.+|+++.|.|.+.| .|.+.++|+++|..+.....+..  ...    .....|.|.++...|+|.|+|.|.|.
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            344778899999999999998 77799999999987654322211  100    11237999999999999999999998


Q ss_pred             CCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEcc
Q psy8139         531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISD  610 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~  610 (1101)
                         ...++.|.|..+|.+...+.. ..+.+..|+.+.|.|.+.|.|.|.+.|+++|..+..+....    .....+....
T Consensus       313 ---~~~~~~L~V~~~p~i~~~~~~-~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~~~~~~  384 (423)
T 3qs7_E          313 ---PSQSALVTIVEKGFINATNSS-EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFC  384 (423)
T ss_dssp             ---EEEEEEEEEESSCEEEEC----CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEEC
T ss_pred             ---CCceEEEEEEeCCcceEcCCC-ccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCCcEEEEEe
Confidence               666788999888876554432 24456789999999999999999999999999886432100    0011112244


Q ss_pred             CCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCc
Q psy8139         611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK  647 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~  647 (1101)
                      +...|.|.|+|.|.|..|....+..|.|.+.|.+|..
T Consensus       385 ~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~  421 (423)
T 3qs7_E          385 NHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH  421 (423)
T ss_dssp             CCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred             cccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence            5668999999999999999999999999999888764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.90  E-value=5.3e-21  Score=209.89  Aligned_cols=270  Identities=19%  Similarity=0.289  Sum_probs=214.9

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..||.|...|.++.+..|++++|.|.+.|.|.+.+.|++++..+.....+.+...++...|.|.++...|+|.|+|.|.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            46888999999999999999999999999999999999999999887777777667778999999999999999999999


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                      ..|.....+.|.|..+|.+...+.  ....+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.+........|.|.
T Consensus        83 ~~g~~~~~~~l~V~~~p~~~~~~~--~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEPPRFIKKLE--PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY  160 (284)
T ss_dssp             TTEEEEEEEEEEEECCCEEEECCC--SEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEEC
T ss_pred             CCceEEEEEEEEccCCCcccccCC--CceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEC
Confidence            999888889999999887654432  234678899999999999999999999999999987777777666778899999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCcc-EEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCC
Q psy8139         610 DARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA-KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPG  688 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~-~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~  688 (1101)
                      ++...|.|.|+|.|.|..|.......+.|..+|.....+ ......+..+.|.|...+.                     
T Consensus       161 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~---------------------  219 (284)
T 2rik_A          161 NLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGT---------------------  219 (284)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSS---------------------
T ss_pred             CCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEec---------------------
Confidence            999999999999999999988888899998877332211 2334567789999985321                     


Q ss_pred             CCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCC
Q psy8139         689 KPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVV  768 (1101)
Q Consensus       689 ~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~  768 (1101)
                                   ....+.|....    .++.         .+........  .....+.|.++.......|.|.|.|..
T Consensus       220 -------------p~~~v~W~~~~----~~~~---------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~  271 (284)
T 2rik_A          220 -------------PPFQVSWHKDK----RELR---------SGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDV  271 (284)
T ss_dssp             -------------SCCEEEEEETT----EEEC---------BTTTEEEEEE--TTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             -------------CCCEEEEEECC----EECc---------CCCCEEEEEc--CCEEEEEEcCCCcccCEEEEEEEEeCC
Confidence                         11356776421    1110         0111111111  234578899999999999999999999


Q ss_pred             cc
Q psy8139         769 GF  770 (1101)
Q Consensus       769 G~  770 (1101)
                      |.
T Consensus       272 G~  273 (284)
T 2rik_A          272 GS  273 (284)
T ss_dssp             EE
T ss_pred             Cc
Confidence            96

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=255.24  Aligned_cols=409  Identities=15%  Similarity=0.094  Sum_probs=244.2

Q ss_pred             hhhhh-cccccCcceEEEeeecccccccccceeeec--cCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         307 KKTAD-NQFENQAPLYVRLEEAITGLNVGTDLYCVI--KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       307 ~l~i~-~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v--~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      .+.|. ++.....+.|.|.|.|..|.+.+....+..  ..+|.+|..+.+. +. ..+.+++.|+|.+|...++ .+.+|
T Consensus       158 ~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~-~~-~~~~~~v~l~W~~p~~~~~-~~~~Y  234 (589)
T 3l5h_A          158 SCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVI-NS-EELSSILKLTWTNPSIKSV-IILKY  234 (589)
T ss_dssp             CCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEE-CT-TTCTTCEEEECCCCGGGGT-SCEEE
T ss_pred             EEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEE-ec-CCCCCeEEEEeCCCCCCCe-eeEEE
Confidence            34555 455556667778888888887665544433  3467777666551 12 5678999999999865444 78999


Q ss_pred             EEEEEecCCCceEEcCcc--ccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCC-CCCeeeecCc
Q psy8139         384 LVEHRRTGSPYWVRASPH--MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIRALH  460 (1101)
Q Consensus       384 ~v~~~~~~~~~w~~~~~~--~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~-~~P~~~~~p~  460 (1101)
                      .|+++..+...|......  .....++.|.+|.|++.|.|+|.|.|..|.+.+|.+|..+.+......+ .+|.......
T Consensus       235 ~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~  314 (589)
T 3l5h_A          235 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKID  314 (589)
T ss_dssp             EEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECC
T ss_pred             EEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEee
Confidence            999999887788765321  2345789999999999999999999999998888777777654433222 3333211100


Q ss_pred             eeEEccCCeEEEEEEEec--cCC---C--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         461 DTTALEDEKVEFTVQVEG--IPT---P--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g--~p~---~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .........+.|.|....  .+.   .  .|.|...+....     .  .......+++  +.++..|.+.+.|.|..|.
T Consensus       315 ~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~-----~--~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~  385 (589)
T 3l5h_A          315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-----N--YTVNATKLTV--NLTNDRYLATLTVRNLVGK  385 (589)
T ss_dssp             SCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCC-----B--CCCSSSCCEE--CCCSSCCCEEEEEEBTTBC
T ss_pred             cCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCce-----e--eccCCceEEE--EeCCCCEEEEEEEEeCCcc
Confidence            000122344555554211  111   1  234432221110     0  1111123333  7788999999999999997


Q ss_pred             eEEEEEEeeccCCccccCCCCCCCeEEe-eCCEEEEEEEEeecC--CCeeEEEECCeecCCCCceEEEeecceEEEEEcc
Q psy8139         534 SITKARLRLEAPPTIRLPKQYEDGLLFE-MGEIIKLKVSMAGMP--PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISD  610 (1101)
Q Consensus       534 ~~~s~~l~V~~~p~~~~~~~~~~~~~v~-~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~  610 (1101)
                      +..+. +.+...+..  ++.....+.+. .+..+.|.+.....+  ...|.|...+........+..........+.+.+
T Consensus       386 ~~~s~-~~~~~~~~~--~~~p~~~l~~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (589)
T 3l5h_A          386 SDAAV-LTIPACDFQ--ATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGN  462 (589)
T ss_dssp             CCCCC-CCCCCTTCC--CCSCCCSCEEEECSSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSC
T ss_pred             CCCeE-EEeeccccc--CCCCcceEEEEECCCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhc
Confidence            76542 222211111  11111122222 234444444332111  2245565433221111111112223345667799


Q ss_pred             CCCCCCeEEEEEEEeCCCCceeEEEEEEec---CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCC
Q psy8139         611 ARRADRGEYQAHGVNSLGEDVASFLVTVTD---RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPP  687 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~---~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p  687 (1101)
                      |.++..|.|++.|.|..|.+..+. +.+..   .|.+|.++.+...+.+++.|+|.+|                      
T Consensus       463 L~p~t~Y~~~V~A~~~~g~g~~~~-~~~~t~~~~P~~pp~l~~~~~~~~sv~l~W~~~----------------------  519 (589)
T 3l5h_A          463 LAESKCYLITVTPVYADGPGSPES-IKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQL----------------------  519 (589)
T ss_dssp             CCSSSEEEEEECBEETTEECCCEE-EEEESSCCCCSSCCCCCEECCCSSCBEEBCCCC----------------------
T ss_pred             cccCcEEEEEEEEEeCCcccCCEE-EEEEeccCCCCCCCeEEEeecccceEEEEecCC----------------------
Confidence            999999999999999988766543 22222   3444445655555555666666542                      


Q ss_pred             CCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC
Q psy8139         688 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV  767 (1101)
Q Consensus       688 ~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  767 (1101)
                                             |..++++.|.+|.|.|+..++..|.....  ...++++|.+|.|++.|.|+|.|.|.
T Consensus       520 -----------------------~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~A~n~  574 (589)
T 3l5h_A          520 -----------------------PVDVQNGFIRNYTIFYRTIIGNETAVNVD--SSHTEYTLSSLTSDTLYMVRMAAYTD  574 (589)
T ss_dssp             -----------------------CHHHHCSCEEEEEECCBCSSCCCCCEEEC--TTCCBCCBCSCCSSCCEECCEEEEET
T ss_pred             -----------------------CHHHcCccceeEEEEEEeCCCCeEEEEeC--CcccEEEecCCCCCCEEEEEEEEEeC
Confidence                                   12334457889999988877666643332  67889999999999999999999999


Q ss_pred             CccCCCCCCCCc
Q psy8139         768 VGFSEPGPLSEP  779 (1101)
Q Consensus       768 ~G~g~~S~~s~~  779 (1101)
                      .| |++|+...+
T Consensus       575 ~G-~~~S~~~~~  585 (589)
T 3l5h_A          575 EG-GKDGPEFTF  585 (589)
T ss_dssp             TE-EEECCCCEE
T ss_pred             CC-CCCCCCeEE
Confidence            99 777765443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.90  E-value=5.4e-22  Score=242.17  Aligned_cols=315  Identities=15%  Similarity=0.146  Sum_probs=210.0

Q ss_pred             hhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEE
Q psy8139         307 KKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE  386 (1101)
Q Consensus       307 ~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~  386 (1101)
                      .|.|.++...|+|.|+|.|.|..|.. +..+.+.|..+|  |....      ......++|.|....  ...+...+...
T Consensus       186 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~--p~~~~------~~~G~~v~l~C~~~~--~~~~~~~~~w~  254 (585)
T 2ocw_A          186 SVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPE--PELVY------EDLRGSVTFHCALGP--EVANVAKFLCR  254 (585)
T ss_pred             EEEEccCChhHCeEEEEEeccCCccc-cceEEEEEccCC--CceeE------EcCCCcEEEEEEcCC--CCCCceEEEEE
Confidence            69999999999999999998877764 334566565432  11111      112344555554310  00000111111


Q ss_pred             EEec----------C-----CCceEEcCccccccc--eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC
Q psy8139         387 HRRT----------G-----SPYWVRASPHMVEDT--ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP  449 (1101)
Q Consensus       387 ~~~~----------~-----~~~w~~~~~~~~~~~--~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~  449 (1101)
                      +...          +     .......... ...+  .|.|.+++..|.|.|+|.|.|. |....+.....+.+.+.   
T Consensus       255 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~---  329 (585)
T 2ocw_A          255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQ-DKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVN---  329 (585)
T ss_pred             eCCCCCcceEEeCCCcCCcccCCceEeecc-CCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEe---
Confidence            0100          0     0001111000 1123  7999999999999999999995 44332222233445543   


Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE----EEEE--CCE--Eeec---------CCcEEEEe--cCCeeEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV----SWYK--DGF--EIFS---------SRRQRIVT--DNDISTL  510 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v----~W~~--~g~--~~~~---------~~~~~~~~--~~~~~~l  510 (1101)
                       .+|.+...|....+..|+++.|.|.+.+.|.+.+    .|++  +|.  .+..         ..++.+..  ..+..+|
T Consensus       330 -~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L  408 (585)
T 2ocw_A          330 -EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTV  408 (585)
T ss_pred             -cccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEE
Confidence             4566777788889999999999999999999977    7999  876  4432         23444443  2333459


Q ss_pred             EEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEe----ecCCCeeEEEECC
Q psy8139         511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPPTARWLHNG  586 (1101)
Q Consensus       511 ~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~----g~p~~~v~W~~~g  586 (1101)
                      .|.++...|+|.|+|.| |..|.....+.|.|..+|.....   +....+..|+.+.|.|.+.    +.|.+.+.|+++|
T Consensus       409 ~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~---~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g  484 (585)
T 2ocw_A          409 ILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKV---PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG  484 (585)
T ss_pred             EECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcccccc---CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecC
Confidence            99999999999999999 98888888888998764333222   2345788999999999997    6778899999999


Q ss_pred             eecCCCCc------eE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEEEEEecCC
Q psy8139         587 EPLTSGGR------YE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRP  642 (1101)
Q Consensus       587 ~~l~~~~~------~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~~~P  642 (1101)
                      ..+.....      +. +...+....|.|.++...|.|.|+|.|.|..|.... .+.|.|..+|
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             ceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            87743211      11 112234579999999999999999999999997665 4888998776

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.89  E-value=4.8e-23  Score=247.71  Aligned_cols=315  Identities=13%  Similarity=0.081  Sum_probs=196.8

Q ss_pred             hhhhhhhcccccCcc-eEEEeeecccccccccceeeeccCCCCCC----CCCcccCCCCCCCCCeeEEEEeCCCCCCCcC
Q psy8139         305 QAKKTADNQFENQAP-LYVRLEEAITGLNVGTDLYCVIKKPPGPP----GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP  379 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g-~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P----~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~  379 (1101)
                      .+.|.|.++...|+| .|.|.+.|..|...+..+.+.+...+..|    ..|...   .......++|.|.....+.  +
T Consensus       167 ~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~---~v~~G~~v~L~C~~~g~p~--p  241 (524)
T 2ec8_A          167 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY---LLREGEEFTVTCTIKDVSS--S  241 (524)
T ss_dssp             TTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEE---EEETTSCEEEEEEEEESST--T
T ss_pred             CccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcc---eEEcCCcEEEEEEEecCCC--c
Confidence            456999999999999 99999988777665556666665222211    111111   0123455666665531110  1


Q ss_pred             eeEEEEEEEecCCC---ceEE---cC--ccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCC
Q psy8139         380 VLGYLVEHRRTGSP---YWVR---AS--PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA  451 (1101)
Q Consensus       380 i~~Y~v~~~~~~~~---~w~~---~~--~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~  451 (1101)
                      . .+  .|...+..   .+..   ..  ........|.|.++...|.|.|+|.|.|..|....     .+.+.+.    .
T Consensus       242 ~-~i--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-----~~~l~V~----~  309 (524)
T 2ec8_A          242 V-YS--TWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV-----TTTLEVV----D  309 (524)
T ss_dssp             C-EE--EEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE-----EEEEEEE----S
T ss_pred             E-EE--EEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEE-----EEEEEEe----c
Confidence            1 11  12111111   1110   00  01123468999999999999999999998886532     3445443    5


Q ss_pred             CCeeeecC---ceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCC-cEEEEecC----CeeEEEEeecCCCCCEE
Q psy8139         452 APSFIRAL---HDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSR-RQRIVTDN----DISTLIIHQAALMDEGE  522 (1101)
Q Consensus       452 ~P~~~~~p---~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~-~~~~~~~~----~~~~l~I~~l~~~d~g~  522 (1101)
                      +|.+...|   ....+..|+++.|.|.+.|.|.|. +.|+++|..+.... .+.....+    ....|.|.++...|+|.
T Consensus       310 ~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  389 (524)
T 2ec8_A          310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT  389 (524)
T ss_dssp             SCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEE
T ss_pred             cCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeE
Confidence            66665544   368899999999999999999999 99999998876554 33322222    34689999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecC--------CCCc
Q psy8139         523 IKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------SGGR  594 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~--------~~~~  594 (1101)
                      |+|.|.|..|....++.|.|..+|.+...+.      +..|   .|.|.+.|.|.|.+.|++++..+.        .+..
T Consensus       390 Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~------~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~  460 (524)
T 2ec8_A          390 YTFLVSNSDVNAAIAFNVYVNTKPEILTYDR------LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQ  460 (524)
T ss_dssp             EEEEEECSSCEEEEEEEEEECEEEEEEEEEC------CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCC
T ss_pred             EEEEEEecCceEEEEEEEEEecCCeEeeccc------CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCce
Confidence            9999999999988899999999888765443      2234   899999999999999999976552        1111


Q ss_pred             eEEEeecceEEEE----EccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCC
Q psy8139         595 YEITHTDRYLNLR----ISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP  645 (1101)
Q Consensus       595 ~~~~~~~~~~sl~----i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P  645 (1101)
                      .........+.+.    +......|.|.|+|.|.|..|.....+.|.|.+.|...
T Consensus       461 ~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~  515 (524)
T 2ec8_A          461 TLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQ  515 (524)
T ss_dssp             CCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-------
T ss_pred             eeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHHH
Confidence            1100111122222    44444689999999999999999888888888766543

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.89  E-value=2.3e-20  Score=213.89  Aligned_cols=338  Identities=16%  Similarity=0.156  Sum_probs=213.9

Q ss_pred             CCCCCcccCCCCCCCCC-eeEEEEeCCCCCCCcCeeEEEEEEEecCCCc--eEEcCccccccceEEEcCccCCccEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRD-VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY--WVRASPHMVEDTELMVSGLEPGWRYQFRI  423 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~-sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~--w~~~~~~~~~~~~l~i~~L~p~d~y~y~c  423 (1101)
                      |+.+|..+.+. ..+.+ ++.|+|.+|. .  ..+.+|.|++...++..  +... .......++.|.+|.|++.|.|+|
T Consensus         2 P~~~P~~l~~~-~~~~~~sv~l~W~~~~-~--~~~~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V   76 (375)
T 3t1w_A            2 PLSPPTNLHLE-ANPDTGVLTVSWERST-T--PDITGYRITTTPTNGQQGNSLEE-VVHADQSSCTFDNLSPGLEYNVSV   76 (375)
T ss_dssp             CCCCCEEEEEE-EETTTTEEEEEEECCS-C--SSCCEEEEEEEETTCTTSCCEEE-EEETTCCEEEECCCCTTCCEEEEE
T ss_pred             CCCCCCccEEE-ecCCCeEEEEEEeCCC-C--CCeeeEEEEEEECCCCCCcceeE-EcCCCccEEEEcCCcCCCEEEEEE
Confidence            34455555444 66778 9999999983 2  26899999998765421  2221 122456789999999999999999


Q ss_pred             EEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEcc--CCeEEEEEEEeccCCC---eEEEEECCEEeecCCc
Q psy8139         424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE--DEKVEFTVQVEGIPTP---KVSWYKDGFEIFSSRR  498 (1101)
Q Consensus       424 ~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~--g~~v~L~C~~~g~p~~---~v~W~~~g~~~~~~~~  498 (1101)
                      .|.|..|.+.+      ..+.....   .|    .|.++.+..  ...+.|.|........   .|.|...+..   ...
T Consensus        77 ~a~~~~g~s~~------~~~~~~~~---~p----~p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~~~~~~~---~~~  140 (375)
T 3t1w_A           77 YTVKDDKESVP------ISDTIIPE---VP----QLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEG---IPI  140 (375)
T ss_dssp             EEEETTEECCC------EEEEECCC---CC----CCSCCEEECCCSSEEEEECCCCCCTTEEEEEEEEEESSSC---CSC
T ss_pred             EEEcCCCCCCc------EEeeEcCC---CC----CCceEEEEecCCCeEEEEEECCCCCCceEEEEEEEECCCC---Cce
Confidence            99998776543      33333222   12    134444433  3445555543211111   2444433211   112


Q ss_pred             EEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC
Q psy8139         499 QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP  578 (1101)
Q Consensus       499 ~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~  578 (1101)
                      ...........+.|.+|.++..|.|.+.|.|..|.+..+.......+|    +|             ..+.+...+....
T Consensus       141 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~----~p-------------~~l~~~~~~~~si  203 (375)
T 3t1w_A          141 FEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVP----PP-------------TDLRFTNIGPDTM  203 (375)
T ss_dssp             EEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEECCCC----CC-------------EEEEEESCCSSCE
T ss_pred             eEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeeecCCC----CC-------------ceeEEEecccCEE
Confidence            233344455689999999999999999999998876554422222121    11             1122222233344


Q ss_pred             eeEEEECC-eecC-----------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCC
Q psy8139         579 TARWLHNG-EPLT-----------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG  646 (1101)
Q Consensus       579 ~v~W~~~g-~~l~-----------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~  646 (1101)
                      .++|.... ..+.           ...............+.+.+|.++..|.|++.|.|..|.+... ...+...|.+|.
T Consensus       204 ~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~-~~~~~t~p~~P~  282 (375)
T 3t1w_A          204 RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RGRQKTGLDSPT  282 (375)
T ss_dssp             EEEEECCSSCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEECCCCCCE
T ss_pred             EEEEcCCCCCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCce-eeEEecCCCCCC
Confidence            44554321 1100           0112233344455789999999999999999999998876554 344556788888


Q ss_pred             ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEE
Q psy8139         647 KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEH  726 (1101)
Q Consensus       647 ~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~  726 (1101)
                      ++.+..++.+++.|+|++|.                                                  +.+.+|.|.|
T Consensus       283 ~l~~~~~~~~sv~l~W~~p~--------------------------------------------------~~~~~Y~v~~  312 (375)
T 3t1w_A          283 GIDFSDITANSFTVHWIAPR--------------------------------------------------ATITGYRIRH  312 (375)
T ss_dssp             EEEEESCCSSCEEEEEECCS--------------------------------------------------SCCSEEEEEE
T ss_pred             ccEeeeccCCEEEEEECCCC--------------------------------------------------cceeeEEEEE
Confidence            88877777777777777542                                                  2477888888


Q ss_pred             EeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         727 RRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       727 ~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ...+. ..+.... .....++++|.+|.|++.|.|+|.|.|..|.|++.
T Consensus       313 ~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~  360 (375)
T 3t1w_A          313 HPEHFSGRPREDR-VPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL  360 (375)
T ss_dssp             EETTCCSSCEEEE-EETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EECCCCCcceeEE-cCCCccEEEECCCCCCCEEEEEEEEECCCCCCCce
Confidence            87665 3333322 22677899999999999999999999999998764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.89  E-value=1.4e-21  Score=230.21  Aligned_cols=326  Identities=13%  Similarity=0.075  Sum_probs=198.9

Q ss_pred             hhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCC-CCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         306 AKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP-GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       306 ~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P-~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      ..|.|.++.. |.| |.|.+.+. |...+..+.+.+..+|... ..|...   .......++|.|....   ..+...+.
T Consensus        50 ~~l~i~~v~~-d~g-Y~C~a~~~-~~~~~~~~~l~V~~~P~~~~~~~~~~---~v~~G~~v~L~C~~~g---~~~~~~~~  120 (450)
T 1z7z_I           50 KVYELSNVQE-DSQ-PMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPS---WQPVGKNLTLRCQVEG---GAPRANLT  120 (450)
T ss_dssp             EEEEEEEECS-CBC-CEEEEEET-TEEEEEECEEEEEBCCSEEEECCCCS---EECTTSEEEEEEEEEC---CBCGGGEE
T ss_pred             eEEEEEeccc-CCe-eEEEEeCC-CCcceeEEEEEEEeCCCcceecCCCc---eEeeCCeEEEEEEecC---CCCCcCcE
Confidence            3688999987 999 99999543 3333444566665544322 111111   0223567888887642   21222223


Q ss_pred             EEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC---CCCCcceEEEeccCCCCCCeeeecCce
Q psy8139         385 VEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP---GPLSEPLTVTYQRSPAAAPSFIRALHD  461 (1101)
Q Consensus       385 v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~---s~~s~~vtv~~~~~~~~~P~~~~~p~~  461 (1101)
                      +.|...+................|.|.++...|.|.|+|.|.|..|....   ...+....+.+...+..+|.+...   
T Consensus       121 v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---  197 (450)
T 1z7z_I          121 VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---  197 (450)
T ss_dssp             EEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---
T ss_pred             EEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---
Confidence            33332221110000011122358999999999999999999999775321   111233344443333445554322   


Q ss_pred             eEEccCCeEEEEEEEecc-C--CCeEEEEECCEEeecCCcEEEEecCCeeEEE-EeecCCCCCE--EEEEEEEeCCCceE
Q psy8139         462 TTALEDEKVEFTVQVEGI-P--TPKVSWYKDGFEIFSSRRQRIVTDNDISTLI-IHQAALMDEG--EIKCTATNRAGHSI  535 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~-p--~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~-I~~l~~~d~g--~Y~C~a~n~~g~~~  535 (1101)
                      ..+..|+.+.|.|.+.|. |  .+.+.|++++..+..  .  +...+....+. ..++...|+|  .|+|.|.|..|...
T Consensus       198 ~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~  273 (450)
T 1z7z_I          198 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE  273 (450)
T ss_dssp             SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEE
T ss_pred             eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEE
Confidence            678899999999999998 7  789999999988765  2  22222222221 2277899999  99999999999988


Q ss_pred             EEEEEeecc--CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCC
Q psy8139         536 TKARLRLEA--PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR  613 (1101)
Q Consensus       536 ~s~~l~V~~--~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~  613 (1101)
                      ..+.|.|..  +|.+...     ...+..|+.+.|.|.+.  |.+.+.|  +|..+..        .+....|.|.++..
T Consensus       274 ~~~~l~V~~~~~p~i~~~-----~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~  336 (450)
T 1z7z_I          274 TLQTVTIYSFPAPNVILT-----KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPE  336 (450)
T ss_dssp             EEEEEEEECCCCCEEEES-----CSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGG
T ss_pred             EEEEEEEecCCCCeEecC-----CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcc
Confidence            888888887  4444322     23788999999999998  8899999  7766521        12244789999999


Q ss_pred             CCCeEEEEEEEeCCC-Cc---eeEEEEEEecCCCCCCc---cEEEEecCCeEEEEeec
Q psy8139         614 ADRGEYQAHGVNSLG-ED---VASFLVTVTDRPLPPGK---AKVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G-~~---~~s~~l~v~~~P~~P~~---~~~~~~~~~sv~lsW~~  664 (1101)
                      .|.|.|+|.|.|..| ..   ..+..|.|..+|.....   .......+..+.|.|..
T Consensus       337 ~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~  394 (450)
T 1z7z_I          337 DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA  394 (450)
T ss_dssp             GTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCC
T ss_pred             cCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEec
Confidence            999999999997665 32   35667777766633221   23455678889998875

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.88  E-value=3.1e-21  Score=223.51  Aligned_cols=390  Identities=14%  Similarity=0.100  Sum_probs=243.3

Q ss_pred             hhhhhcccccCcceEEEeeecccccccccceeeeccCCCCC--CCCCcccCCCCCCCCCeeEEEEeCCCCC-CCcCeeEE
Q psy8139         307 KKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGP--PGKPQLLPDSPSLDRDVFTIRWEPPEYD-GGSPVLGY  383 (1101)
Q Consensus       307 ~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~--P~~p~~l~~~~~~~~~sv~l~W~~p~~~-g~~~i~~Y  383 (1101)
                      .+.|..+..+|. .++..  ...+.    ...+++-+.+..  |.+|..|..........+.|+|..+... ...-...|
T Consensus        54 ~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~  126 (488)
T 2q7n_A           54 NVKIPALSPGDH-EVTIN--YLNGF----QSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATW  126 (488)
T ss_dssp             EEEEECCCSSCE-EEEEE--ESSSC----EEEEEECSTTCEECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEE
T ss_pred             eeEcccCCCCcc-eEEEe--eccCc----eeEEEEecCccccCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEE
Confidence            355666677774 44432  23322    334444444444  7777777655444578999999887321 11113578


Q ss_pred             EEEEEecCC--CceEEcCccccccc----eEEEcCcc--CCccEEEEEEEEe----cCCCCCCCCCCcceEEEeccCCCC
Q psy8139         384 LVEHRRTGS--PYWVRASPHMVEDT----ELMVSGLE--PGWRYQFRITAEN----VVGFSEPGPLSEPLTVTYQRSPAA  451 (1101)
Q Consensus       384 ~v~~~~~~~--~~w~~~~~~~~~~~----~l~i~~L~--p~d~y~y~c~A~n----~~G~~~~s~~s~~vtv~~~~~~~~  451 (1101)
                      .|++....+  ..|...........    ...-+.+.  ....|.++++...    ..|.+.+|.+|..-++..+    .
T Consensus       127 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~----~  202 (488)
T 2q7n_A          127 EIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI----R  202 (488)
T ss_dssp             EEECCCSSSSCSCCCEECCEECSSSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC----C
T ss_pred             EEEEEEeccceEEEEEEEEEEecCCCceeEeeccCCCcccccceEEEEEEEeccccccCCCCCcCCCChhhcCCc----C
Confidence            887543322  22322111101111    22323332  3668899999986    5577889999988877654    4


Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +..+...|.+..+..|++++|.|.+.   .+.+.|.++|..+...   .  ..+..+.|+|.++...|+|.|.|.+.+  
T Consensus       203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~---r--i~~~~~~L~I~nl~~sd~g~y~~~C~~--  272 (488)
T 2q7n_A          203 NTETNVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI---H--LYGQTVAIHILNIPVSENSGTNIIFIT--  272 (488)
T ss_dssp             CSSCCEECTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE---E--CSSSCEEEECCSCCCCCSSCEEEEEEE--
T ss_pred             CCceEECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh---h--ccceEEEEEEeCCCcccCCcEEEEEEc--
Confidence            45566778888899999999999988   3589999999877543   1  245567999999999988888776663  


Q ss_pred             CceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeec---CCCCceEEEe---------
Q psy8139         532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITH---------  599 (1101)
Q Consensus       532 g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l---~~~~~~~~~~---------  599 (1101)
                      +.....+.+.|..+|..+.      .          +.|.........++|.......   .....|.+..         
T Consensus       273 ~~~i~~~~l~v~~pP~~P~------n----------l~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c  336 (488)
T 2q7n_A          273 DDDVYGTVVFAGYPPDVPQ------K----------LSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF  336 (488)
T ss_dssp             SSCEEEEEEEEECCCCCCC------S----------CEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEE
T ss_pred             CCeEEEEEEEeeCCCCCCc------c----------cEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCC
Confidence            2233467788877765321      1          2333333333334444321110   0011122111         


Q ss_pred             ------ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe----cCCCCCCccEEEEecCCeEEEEeecCCCCC
Q psy8139         600 ------TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT----DRPLPPGKAKVVMTLGKSVTLSWSEPEDDG  669 (1101)
Q Consensus       600 ------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~----~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~  669 (1101)
                            .+....+.+..+...+.|.|+|.|.|..|....  .+.+.    .+|+||.++.+...+.+++.|+|++|... 
T Consensus       337 ~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~-  413 (488)
T 2q7n_A          337 HRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNF-  413 (488)
T ss_dssp             ECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEEC-
T ss_pred             ccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCC-
Confidence                  022345666544445899999999999998543  33332    36889998888877788888888876322 


Q ss_pred             CcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCcee-ecccccCccEE-
Q psy8139         670 GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR-ASPHMVEDTEL-  747 (1101)
Q Consensus       670 g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~-~~~~~~~~~~~-  747 (1101)
                                                                    ++.+++|.|.|+..+...|.. ........+.+ 
T Consensus       414 ----------------------------------------------~g~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~  447 (488)
T 2q7n_A          414 ----------------------------------------------TKINLLCQIEICKANSKKEVRNATIRGAEDSTYH  447 (488)
T ss_dssp             ----------------------------------------------SSSEEEEEEEEBCTTSCCEEEEEEEECCEEEEEE
T ss_pred             ----------------------------------------------CCcceEEEEEEEECCCCCceEEEEEecCCCcEEE
Confidence                                                          235788999998887766642 22111123455 


Q ss_pred             -EEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         748 -MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       748 -~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                       +|.+|.|++.|.|+|+|.| .|.|.+|++|......
T Consensus       448 v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~  483 (488)
T 2q7n_A          448 VAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHL  483 (488)
T ss_dssp             EEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBC
T ss_pred             EEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEE
Confidence             9999999999999999999 9998788877666553

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.88  E-value=9.7e-22  Score=218.95  Aligned_cols=267  Identities=15%  Similarity=0.160  Sum_probs=173.5

Q ss_pred             cCceeEEccCCeEEEEEEEecc-----CCCeEEEEECCEEeecCCcEEEEecCC-eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGI-----PTPKVSWYKDGFEIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .|.+..+..|++++|.|.+.+.     |.+.+.|.++|..+.. .++.....+. .+.|+|.++...|+|.|.|.+.+..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~   84 (313)
T 2d9q_B            6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNS   84 (313)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSS
T ss_pred             ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCC
Confidence            3556778999999999999997     6789999999987743 2222222222 2689999999999999999986654


Q ss_pred             CceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCCeeEEEECCeecCCCCceEEEe-----------
Q psy8139         532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITH-----------  599 (1101)
Q Consensus       532 g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~-----------  599 (1101)
                      +.....+.|.|..+|..                +..+.|...+. ....++|........ ...|.+..           
T Consensus        85 ~~~~~~~~l~v~~~P~~----------------P~~l~c~~~~~~~~~~~~W~~~~~~~~-~~~Y~l~~~~~~~~~~~~~  147 (313)
T 2d9q_B           85 LQILDQVELRAGYPPAI----------------PHNLSCLMNLTTSSLICQWEPGPETHL-PTSFTLKSFKSRGNCQTQG  147 (313)
T ss_dssp             EEEEEEEEEEECCCCCC----------------CEEEEEEEETTTTEEEEEEECCSCCSS-CCEEEEEEEECCTTSCSCC
T ss_pred             ceeEEEEEEccCCCCCC----------------CccceeeECCCCccEEEEecCCCCCCC-ceeEEEEEEecCCCcccCC
Confidence            44445567777666532                23455555532 345566654321110 01122111           


Q ss_pred             --------ecceEEEEE--ccCCCCCCeEEEEEEEeCCCCcee-EEEEEEe--cCCCCCCccEEEEecCCeEEEEeecCC
Q psy8139         600 --------TDRYLNLRI--SDARRADRGEYQAHGVNSLGEDVA-SFLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPE  666 (1101)
Q Consensus       600 --------~~~~~sl~i--~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~  666 (1101)
                              ......+.+  .+|.+...|.|+|.|.|..|.+.+ ...+...  .+|+||.++.+.....           
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~-----------  216 (313)
T 2d9q_B          148 DSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPE-----------  216 (313)
T ss_dssp             CCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC--------------
T ss_pred             cccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecc-----------
Confidence                    112234455  459999999999999999998533 2222211  2477776665443210           


Q ss_pred             CCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEE-eCCCCCceeecccccCcc
Q psy8139         667 DDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDT  745 (1101)
Q Consensus       667 ~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~-~~~~~~~~~~~~~~~~~~  745 (1101)
                                                   ....+++++.|+|++|.. ++..+++|.|+|+ ..++..|..+.......+
T Consensus       217 -----------------------------~~~~~~~~l~l~W~~p~~-~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~  266 (313)
T 2d9q_B          217 -----------------------------AAPPQAGCLQLSWEPWQP-GLHINQKCELRHKPQRGEASWALVGPLPLEAL  266 (313)
T ss_dssp             ---------------------------------CCSCEEEEEECCGG-GTTSCEEEEEEEEESSSCCCCEEEEEECSCEE
T ss_pred             -----------------------------cccCCCCeEEEEECCCCC-CCceeEEEEEEEccCCCCCCcEEcccccCcce
Confidence                                         000023445555555432 2333579999999 667778987644334567


Q ss_pred             EEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       746 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      .++|.+|.|++.|.|+|+|.|..|.|.+|+++......
T Consensus       267 ~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~  304 (313)
T 2d9q_B          267 QYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR  304 (313)
T ss_dssp             EEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEEC
T ss_pred             EEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCcccee
Confidence            89999999999999999999999999999999887765

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-21  Score=237.60  Aligned_cols=321  Identities=10%  Similarity=0.022  Sum_probs=191.1

Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCC-ce--eEEEEEEe---cCCCCCCccEEEEe--cCC---eEEEEeecCCCCC
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGE-DV--ASFLVTVT---DRPLPPGKAKVVMT--LGK---SVTLSWSEPEDDG  669 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~--~s~~l~v~---~~P~~P~~~~~~~~--~~~---sv~lsW~~p~~~~  669 (1101)
                      .....++|.+|.+++.|.|+|.|.|..|. +.  .+..+...   .+|.+|.++.+...  +.+   +|.|+|++|...+
T Consensus       220 ~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~  299 (680)
T 1zlg_A          220 TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPD  299 (680)
T ss_pred             cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCC
Confidence            34567899999999999999999999883 22  22233322   36788888888776  666   7777777664332


Q ss_pred             CcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeC-------CCCCceeeccccc
Q psy8139         670 GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-------GSPYWVRASPHMV  742 (1101)
Q Consensus       670 g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~-------~~~~~~~~~~~~~  742 (1101)
                                                                     ++|.+|.|+|+..       ....|..... ..
T Consensus       300 -----------------------------------------------g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v-~~  331 (680)
T 1zlg_A          300 -----------------------------------------------IPVHHYKVFWSWMVSSKSLVPTKKKRRKTT-DG  331 (680)
T ss_pred             -----------------------------------------------CceeEEEEEEEecccccccCCccceEEEEE-cC
Confidence                                                           3466666666521       1124444332 24


Q ss_pred             CccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceec-----------cccC
Q psy8139         743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALE-----------DEKP  809 (1101)
Q Consensus       743 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~-----------~w~p  809 (1101)
                      +.++++|.+|.|++.|.|+|.|.|..|.|++|.....+...+...++. |.++.  ...++++.+           .|.+
T Consensus       332 ~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~  410 (680)
T 1zlg_A          332 FQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGA  410 (680)
T ss_pred             CeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-ccccccccccCccccccccccCCCccccccC
Confidence            568999999999999999999999999998877644344333233333 44443  333344433           7877


Q ss_pred             CCCCCccccceeeeec---CcchhHHHHhHhhhceeeEEeeeeccCC---CCCCceeeeeccccccCCCCCCCCCccCcc
Q psy8139         810 RNTNNCDYESKRTFQS---TSPMLAAFMLLMLFTFIETISSFRDKYV---DNEDDYDIVETNEHTGTGAPSDNENESDYF  883 (1101)
Q Consensus       810 ~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~Y~v~~r~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t  883 (1101)
                      |...++ +..|...+.   .+.+.            .|.|.|+....   +..|.....    .........+.+|.+++
T Consensus       411 P~~~~~-~~~y~v~w~~~~~~~v~------------~Y~V~w~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~L~p~t  473 (680)
T 1zlg_A          411 PFYQDG-QLQVKVYWKKTEDPTVN------------RYHVRWFPEACAHNRTTGSEASS----GMTHENYIILQDLSFSC  473 (680)
T ss_pred             CcccCC-cceEEEEEeCCCCCccc------------eEEEEEeeeecccCCCCcceeee----eeccCceEEecCCCCCC
Confidence            643322 222212221   11123            67776654321   111211110    11222334455556999


Q ss_pred             cce--eecccccccC--cee-----------------ecccCCCCcc-----CCCCC----Chhhhhhhhhhhccc---c
Q psy8139         884 PEK--TIDESVYGYD--TIV-----------------YGYDSDDLDR-----HYPTL----DEEEEEEDRESLVKD---R  930 (1101)
Q Consensus       884 ~Y~--V~a~n~~G~~--~~v-----------------~~~t~e~~P~-----~~P~~----v~~~~~~~n~t~v~v---p  930 (1101)
                      .|.  |+|.|..|.+  ...                 +..+.+..|.     .+|.+    +.+...  +++ |.|   |
T Consensus       474 ~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~--~~t-i~lsW~p  550 (680)
T 1zlg_A          474 KYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDV--NIT-GHFSWKM  550 (680)
T ss_pred             eEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEecc--Cce-EEEEecC
Confidence            999  9999999951  111                 1111222233     68888    566665  444 555   4


Q ss_pred             c-cccccchhhcccccchhhhhhcccccc----ccccc-----ccCCceeEeecCCCCCCCceeec-eeeechhhh
Q psy8139         931 E-SSVKGKEEEAKVIKDDEYYENLGDVLT----KKYSL-----PVNSDIQIKIDKPDDEPDYVIKG-KYEVDNEML  995 (1101)
Q Consensus       931 ~-~~~nG~i~gY~I~~~~~~y~~~~~~~~----~~~~l-----~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  995 (1101)
                      | ...||.|+||+|     +|+...+...    ....+     -.+....++|.+|.+++.|.|+. ++...+++-
T Consensus       551 P~~~~ng~I~gY~V-----~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~  621 (680)
T 1zlg_A          551 AKANLYQPMTGFQV-----TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGP  621 (680)
T ss_pred             CCCCCCCCceeEEE-----EEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCC
Confidence            4 356999999999     8875532210    00000     11346689999999999999998 555555543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.88  E-value=2e-21  Score=231.46  Aligned_cols=294  Identities=11%  Similarity=0.064  Sum_probs=185.1

Q ss_pred             hhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEe
Q psy8139         310 ADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR  389 (1101)
Q Consensus       310 i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~  389 (1101)
                      ...+...|+|.|.|.|.|..|...+..+.+.+..+|..|.....     ......++|.|....   +.+...+  .|..
T Consensus       195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~-----v~~G~~v~L~C~~~~---g~p~p~i--~W~k  264 (527)
T 3qs9_E          195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLF-----LKVGEPLWIRCKAVH---VNHGFGL--TWEL  264 (527)
T ss_dssp             CSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCCSCCEEE-----ECTTSCEEEEEEEEE---SSSCCCE--EEEC
T ss_pred             eeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCccCCCceE-----EeCCCeEEEEEEEcc---CCCCeEE--EEEE
Confidence            33455789999999999999887765577777666654332222     122445666665420   1111111  1111


Q ss_pred             cCCC----ceEE-----cCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC-
Q psy8139         390 TGSP----YWVR-----ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL-  459 (1101)
Q Consensus       390 ~~~~----~w~~-----~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p-  459 (1101)
                      .+..    ....     ..........|.|.+++..|+|.|+|.|.|.   .     +..+.+.+.    .+|.+...+ 
T Consensus       265 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~-----~~~~~L~V~----~~p~i~~~~~  332 (527)
T 3qs9_E          265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---P-----SQSALVTIV----EKGFINATNS  332 (527)
T ss_dssp             SSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---E-----EEEEEEEEC------CEEECCCS
T ss_pred             CCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---C-----CceEEEEEE----ccCccccccC
Confidence            1110    0100     0001122346999999999999999999987   1     233555543    345444333 


Q ss_pred             -ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         460 -HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       460 -~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                       ..+.+..|+++.|.|.+.|.|.|.++|+++|..+.......    .....|.|.++...|+|.|+|.|.|..|....++
T Consensus       333 ~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~  408 (527)
T 3qs9_E          333 SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF  408 (527)
T ss_dssp             CCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEE
T ss_pred             cccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEE
Confidence             34667889999999999999999999999999887654321    1234899999999999999999999999999999


Q ss_pred             EEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC-CC-----ceE-----EEeecceEEEE
Q psy8139         539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS-GG-----RYE-----ITHTDRYLNLR  607 (1101)
Q Consensus       539 ~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-~~-----~~~-----~~~~~~~~sl~  607 (1101)
                      .|.|..+|.+...+.         |  ..|.|.+.|.|.|.+.|++++..... ..     .+.     ...........
T Consensus       409 ~L~V~~~P~i~~~~~---------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  477 (527)
T 3qs9_E          409 TLNIRRKPQVLAEAS---------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST  477 (527)
T ss_dssp             EEC--CCCEEEECCC---------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEE
T ss_pred             EEEEecCCeEEEeCC---------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEE
Confidence            999999998754432         2  24799999999999999987654311 00     000     00111112233


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      +.-....|.|.|+|.|.|..|.......|.|.+
T Consensus       478 L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          478 LNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG  510 (527)
T ss_dssp             CCCCCSSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred             EEEEEcCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence            333334599999999999999998888886653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.87  E-value=1.8e-21  Score=225.47  Aligned_cols=300  Identities=21%  Similarity=0.276  Sum_probs=215.2

Q ss_pred             ccceEEEcCc-----cCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec
Q psy8139         404 EDTELMVSGL-----EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG  478 (1101)
Q Consensus       404 ~~~~l~i~~L-----~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g  478 (1101)
                      .++++.|.++     +..|+|.|+|.|.|..+....   +..+.+.+.    .+|.+...+....+..|+++.|.|.+.+
T Consensus        75 ~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~---s~~~~l~v~----~p~~~~~~~~~~~~~~G~~v~l~C~~~~  147 (403)
T 3laf_A           75 PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSII---SRTAKVMVA----GPLRFLSQTESITAFMGDTVLLKCEVIG  147 (403)
T ss_dssp             TTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEE---CCCEEEEEC----CCCEECSCCCCEEEETTSCEEECCCEEC
T ss_pred             cCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEE---EEEEEEEec----CCCccccCCCcEEEEcCCeEEEEEEEcc
Confidence            3456778777     778999999999975443321   233555543    4677777888889999999999999999


Q ss_pred             cCCCeEEEEECCEEeec---CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EEEEEeeccCCccccCC--
Q psy8139         479 IPTPKVSWYKDGFEIFS---SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRLEAPPTIRLPK--  552 (1101)
Q Consensus       479 ~p~~~v~W~~~g~~~~~---~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~~~p~~~~~~--  552 (1101)
                      .|.+.+.|++++..+..   ....... ..  ..|.|.++...|+|.|+|.|.|..|... ....+.|..+|....++  
T Consensus       148 ~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~  224 (403)
T 3laf_A          148 DPMPTIHWQKNQQDLNPIPGDSRVVVL-PS--GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF  224 (403)
T ss_dssp             SSCCEEEEEESSSBCCCCTTCCSEEEC-TT--SCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEE
T ss_pred             cCCCeEEEEECCEeccccCCceEEEEc-CC--ceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceE
Confidence            99999999999887642   2222222 22  3799999999999999999999887644 35677777666432211  


Q ss_pred             -CCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc-eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         553 -QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       553 -~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                       ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... +...   ....|.|.++...|.|.|+|.|.|..|..
T Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (403)
T 3laf_A          225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL---GGSNLLISNVTDDDSGTYTCVVTYKNENI  301 (403)
T ss_dssp             EECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE---TTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC---CccEEEEeCCCHHHCEEEEEEEEcCCCce
Confidence             122345678899999999999999999999999988865432 3222   24579999999999999999999999988


Q ss_pred             eeEEEEEEecCC---CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEE
Q psy8139         631 VASFLVTVTDRP---LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR  707 (1101)
Q Consensus       631 ~~s~~l~v~~~P---~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~  707 (1101)
                      ..+..+.|..+|   ..|.+  .....+..++|+|...+.                                  ....+.
T Consensus       302 ~~~~~l~V~~~p~~~~~~~~--~~~~~g~~v~l~C~~~g~----------------------------------p~p~v~  345 (403)
T 3laf_A          302 SASAELTVLVPPWFLNHPSN--LYAYESMDIEFECAVSGK----------------------------------PVPTVN  345 (403)
T ss_dssp             EEEEEEEEEEEEEEEECCCC--EECCTTCCEEECCEEEEE----------------------------------SCCEEE
T ss_pred             EEEEEEEEECCCcEeecCcc--eEEecCCeEEEEEEEeec----------------------------------cCCEEE
Confidence            888888888665   22333  234457788888875221                                  112467


Q ss_pred             eeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       708 W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      |....    ..+         ..+.. ...    .....++|.++.......|.|.|.|..|.
T Consensus       346 W~~~g----~~~---------~~~~~-~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  390 (403)
T 3laf_A          346 WMKNG----DVV---------IPSDY-FQI----VGGSNLRILGVVKSDEGFYQCVAENEAGN  390 (403)
T ss_dssp             EEETT----EEC---------CCSSS-EEE----ETTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEECC----EEC---------CCCCc-EEE----ecCccEEEeccccccCEEEEEEEEcCCce
Confidence            76421    111         00001 111    23457899999999999999999999997

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.87  E-value=9.8e-21  Score=211.77  Aligned_cols=270  Identities=15%  Similarity=0.161  Sum_probs=180.4

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      |.+...+..+.+..|++++|.|.+.+.+ .+.|.|++++..+.... ......+  +.|.|.++...|+|.|+|.   ..
T Consensus         7 ~~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~--~~L~i~~v~~~d~G~Y~C~---~~   80 (325)
T 1n26_A            7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWAGMG--RRLLLRSVQLHDSGNYSCY---RA   80 (325)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEEEES--SEEEECSCCGGGCEEEEEE---SS
T ss_pred             CccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccc-ccccccc--ceEEecccchhhCeEeEEE---eC
Confidence            3444445555568999999999988755 78999999776542211 1222223  3899999999999999999   36


Q ss_pred             CceEEEEEEeeccCCccccCCCCCCCeEEe-eCCEEEEEEEEeecC----CC--eeEEEEC-CeecCCCCceE--E--Ee
Q psy8139         532 GHSITKARLRLEAPPTIRLPKQYEDGLLFE-MGEIIKLKVSMAGMP----PP--TARWLHN-GEPLTSGGRYE--I--TH  599 (1101)
Q Consensus       532 g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~-~g~~~~l~c~~~g~p----~~--~v~W~~~-g~~l~~~~~~~--~--~~  599 (1101)
                      |.....+.|.|..+|..+.       +... .+....+.|.+....    ..  .+.+.+. +..   ...+.  .  ..
T Consensus        81 g~~~~~~~L~V~~pP~~P~-------l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~---~~~~~~~c~~~~  150 (325)
T 1n26_A           81 GRPAGTVHLLVDVPPEEPQ-------LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSP---AEDFQEPCQYSQ  150 (325)
T ss_dssp             SSCSCEEEEEECCCCCCCC-------CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSS---CEEEEEEEEEET
T ss_pred             CEEeeeEEEEeccCCCCCc-------eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCC---CCcccccCCCCC
Confidence            7777789999988774321       2222 233335666665221    11  2222221 100   00111  0  01


Q ss_pred             ecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee-EEEEEE--ecCCCCCCccEEEEecC--CeEEEEeecCCCCCCccc
Q psy8139         600 TDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA-SFLVTV--TDRPLPPGKAKVVMTLG--KSVTLSWSEPEDDGGCKI  673 (1101)
Q Consensus       600 ~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~-s~~l~v--~~~P~~P~~~~~~~~~~--~sv~lsW~~p~~~~g~~i  673 (1101)
                      .....++.|..+. +.+.|.|+|.|.|..|.+.. ...+.+  ...|+||.++.+....+  +++.|+|++|..      
T Consensus       151 ~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~------  224 (325)
T 1n26_A          151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHS------  224 (325)
T ss_dssp             TTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTT------
T ss_pred             CCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCc------
Confidence            2335677888775 67899999999999998642 222222  24588888877766543  466666665432      


Q ss_pred             ceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCC
Q psy8139         674 GNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE  753 (1101)
Q Consensus       674 ~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  753 (1101)
                                                             .++++.+++|.|+|+..+...|..+... ...++++|.+|.
T Consensus       225 ---------------------------------------~~~~~~~~~Y~V~yr~~~~~~W~~~~~~-~~~~~~~l~~L~  264 (325)
T 1n26_A          225 ---------------------------------------WNSSFYRLRFELRYRAERSKTFTTWMVK-DLQHHCVIHDAW  264 (325)
T ss_dssp             ---------------------------------------CCCSSSCEEEEEEEEETTCSCCEEEECG-GGCSEEEESSCC
T ss_pred             ---------------------------------------cCCCcEeEEEEEEEEeCCCCCCEEEccc-CCceEEEEeCCC
Confidence                                                   1234568999999999888889876542 456899999999


Q ss_pred             CCceEEEEEEEEcCCccCCCCCCCCcEEecC
Q psy8139         754 PGWRYQFRITAENVVGFSEPGPLSEPLTVTY  784 (1101)
Q Consensus       754 p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~  784 (1101)
                      |++.|.|+|+|.|..|.|.+|+++..+..++
T Consensus       265 p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          265 SGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             TTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             CCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence            9999999999999999999999999887753

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.87  E-value=4.5e-21  Score=212.53  Aligned_cols=266  Identities=10%  Similarity=0.026  Sum_probs=184.5

Q ss_pred             eEEeeCCEEEEEEEEeec-------CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         558 LLFEMGEIIKLKVSMAGM-------PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~-------p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ..+..|++++|.|.+.+.       |.+.+.|.++|..+..+ ++.+. .+..++|.|.++... .|.|+|.|.|. |..
T Consensus        14 ~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~-~g~Y~C~a~~~-g~~   89 (303)
T 1i1r_A           14 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASL-NIQLTCNILTF-GQL   89 (303)
T ss_dssp             CEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCS-EEEEEEEEEET-TTE
T ss_pred             ceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCC-ceEEEEecccC-CCc
Confidence            478889999999999964       78999999999988643 44443 334678999999987 59999999884 433


Q ss_pred             ---eeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEE
Q psy8139         631 ---VASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR  707 (1101)
Q Consensus       631 ---~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~  707 (1101)
                         .....+.+..+|++|.++.+.....++++|+|.+|.+.+                                      
T Consensus        90 ~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~--------------------------------------  131 (303)
T 1i1r_A           90 EQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH--------------------------------------  131 (303)
T ss_dssp             EEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS--------------------------------------
T ss_pred             ceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC--------------------------------------
Confidence               234567788899999999888777788888888664322                                      


Q ss_pred             eeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCC-CCCceEEEEEEEEcCCccCCCCCCCCcEEecCCC
Q psy8139         708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL-EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR  786 (1101)
Q Consensus       708 W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~  786 (1101)
                                .+++|.|+|+..+...|.. .......++++|.+| .|++.|.|+|.|.|..|.|.+++   ........
T Consensus       132 ----------~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~---~~~~~~~~  197 (303)
T 1i1r_A          132 ----------LETNFTLKSEWATHKFADC-KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH---INFDPVYK  197 (303)
T ss_dssp             ----------SCCEEEEEEEETTEECCCE-ECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCC---EEECGGGG
T ss_pred             ----------CCcCEEEEEEecCCCCccC-CCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCC---EEECHHHe
Confidence                      2456777776554333322 222356789999999 99999999999999999975432   22222224


Q ss_pred             CCCCCCccccc----ccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeee
Q psy8139         787 SPAAAPSFIRA----LHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIV  862 (1101)
Q Consensus       787 ~P~~~p~~~~~----~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v  862 (1101)
                      .++.||.++..    ..++++.+.|.||..            .+++++            .|.|.|+..+ +..|....+
T Consensus       198 ~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~------------~~~~i~------------~Y~v~y~~~~-~~~w~~~~~  252 (303)
T 1i1r_A          198 VKPNPPHNLSVINSEELSSILKLTWTNPSI------------KSVIIL------------KYNIQYRTKD-ASTWSQIPP  252 (303)
T ss_dssp             EECCCCEEEEEECCSSSSSCEEEEEECCGG------------GGTSCE------------EEEEEEEETT-CSSCEECCG
T ss_pred             EecCCCcceEEEEecCCCCEEEEEECCCCC------------CCcccE------------EEEEEEEeCC-CCCceEEcc
Confidence            57778877652    245678888987432            234566            9999999876 456765432


Q ss_pred             eccccccCCCCCCCCCccCcccce--eeccccccc------CceeecccCCC
Q psy8139         863 ETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY------DTIVYGYDSDD  906 (1101)
Q Consensus       863 ~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e~  906 (1101)
                      ..  .........+.+|.+++.|+  |+|.|..|.      +..+...|.|+
T Consensus       253 ~~--~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          253 ED--TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED  302 (303)
T ss_dssp             GG--GCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred             cc--CCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence            10  01112223344455999999  999999885      45666666654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.87  E-value=2.7e-21  Score=214.57  Aligned_cols=221  Identities=23%  Similarity=0.331  Sum_probs=168.1

Q ss_pred             ceEEEcCccC-CccEEEEEEEEecCCCCCCCCCCcceEEEeccC---CCCCCeeeecCceeEEccCCeEEEEEEEeccCC
Q psy8139         406 TELMVSGLEP-GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS---PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT  481 (1101)
Q Consensus       406 ~~l~i~~L~p-~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~---~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~  481 (1101)
                      ..|.|.++.. .|.|.|+|.|.|..|...     ..+.+.+...   +...|.+...|....+..|+++.|.|.+.|.|.
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~  137 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGEIT-----VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD  137 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCEEC-----CEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCeEE-----EEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC
Confidence            5799999997 999999999999887632     3345555432   223477888888889999999999999999999


Q ss_pred             CeEEEEECCEEeecCC---cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE-EEEeec---cCCccccCCCC
Q psy8139         482 PKVSWYKDGFEIFSSR---RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLE---APPTIRLPKQY  554 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~---~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~---~~p~~~~~~~~  554 (1101)
                      +.+.|++++..+....   ++... ..  ..|.|.++...|+|.|+|.|.|..|..... ..+.|.   .+|.+...+. 
T Consensus       138 ~~v~W~k~~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~-  213 (304)
T 2yd9_A          138 PEITWFKDFLPVDPSASNGRIKQL-RS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM-  213 (304)
T ss_dssp             CEEEEEETTEECCGGGGTTSEEEC-TT--SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCC-
T ss_pred             CeEEEEECCEECcCCCCcceEEeC-CC--eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCC-
Confidence            9999999999876542   22222 22  289999999999999999999999876643 455553   3555554433 


Q ss_pred             CCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       555 ~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                        ...+..|+.+.|.|.+.|.|.|.+.|+++|..+.....+.    .+...|.+.++  .|.|.|+|.|.|..|....++
T Consensus       214 --~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~  285 (304)
T 2yd9_A          214 --SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVA  285 (304)
T ss_dssp             --CBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEE
T ss_pred             --ceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEE
Confidence              2357789999999999999999999999999887654322    23456777776  589999999999999998898


Q ss_pred             EEEEecCCC
Q psy8139         635 LVTVTDRPL  643 (1101)
Q Consensus       635 ~l~v~~~P~  643 (1101)
                      .|.|..+|.
T Consensus       286 ~l~V~~~~~  294 (304)
T 2yd9_A          286 QITVKSLPK  294 (304)
T ss_dssp             EEC------
T ss_pred             EEEEecCcc
Confidence            898886654

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.87  E-value=4.4e-21  Score=219.86  Aligned_cols=290  Identities=12%  Similarity=0.004  Sum_probs=200.2

Q ss_pred             EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       598 ~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      .......++.|.+|.+++.|.|+|.|.|..|.+...........| +|.++.+...+.+++.|+|.+|.           
T Consensus        53 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~-----------  120 (375)
T 3t1w_A           53 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN-----------  120 (375)
T ss_dssp             EEETTCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC-----------
T ss_pred             EcCCCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC-----------
Confidence            344557889999999999999999999988876655444444444 47788877777777777777542           


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCce
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  757 (1101)
                                                            ++++.+|.|+|...+...+..........++++|.+|.|++.
T Consensus       121 --------------------------------------~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  162 (375)
T 3t1w_A          121 --------------------------------------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGID  162 (375)
T ss_dssp             --------------------------------------CTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTCE
T ss_pred             --------------------------------------CCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCCE
Confidence                                                  135788888888766543322222236778999999999999


Q ss_pred             EEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHh
Q psy8139         758 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFML  835 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v  835 (1101)
                      |.|+|.|.|..|.|+++.   ....+   .|+ +|.++.  ....+++.+.|.+|.              ++.+.     
T Consensus       163 Y~~~V~a~~~~g~s~~s~---~~~~t---~~~-~p~~l~~~~~~~~si~l~W~~p~--------------~~~i~-----  216 (375)
T 3t1w_A          163 YDISVITLINGGESAPTT---LTQQT---AVP-PPTDLRFTNIGPDTMRVTWAPPP--------------SIDLT-----  216 (375)
T ss_dssp             EEEEEEEEETTEECCCEE---EEEEC---CCC-CCEEEEEESCCSSCEEEEEECCS--------------SCCCC-----
T ss_pred             EEEEEEEEeCCcccCCee---eeeec---CCC-CCceeEEEecccCEEEEEEcCCC--------------CCCcc-----
Confidence            999999999999977653   33332   333 454544  456677888897742              13455     


Q ss_pred             HhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccccccc--CceeecccCCCCccCC
Q psy8139         836 LMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHY  911 (1101)
Q Consensus       836 ~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~  911 (1101)
                             .|.|.|+..+....|....+..     ......+.+|.+.+.|.  |+|.|..|.  +......|    +..+
T Consensus       217 -------~Y~v~~~~~~~~~~~~~~~~~~-----~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~t----~p~~  280 (375)
T 3t1w_A          217 -------NFLVRYSPVKNEEDVAELSISP-----SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT----GLDS  280 (375)
T ss_dssp             -------EEEEEEEEGGGTTCCEEEEECT-----TCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEEC----CCCC
T ss_pred             -------EEEEEEEeCCCCCCcEEEEcCC-----CcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeEEec----CCCC
Confidence                   8999998877666666655533     12223344455999999  999999987  44444444    3357


Q ss_pred             CCCChhhhhhhhhhhccccccccccchhhcccccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec
Q psy8139         912 PTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       912 P~~v~~~~~~~n~t~v~vp~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      |.++.+...  +.+++.|-+..++|.|.+|.|     +|+..++........-......++|.+|.+|+.|.|+.
T Consensus       281 P~~l~~~~~--~~~sv~l~W~~p~~~~~~Y~v-----~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  348 (375)
T 3t1w_A          281 PTGIDFSDI--TANSFTVHWIAPRATITGYRI-----RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSI  348 (375)
T ss_dssp             CEEEEEESC--CSSCEEEEEECCSSCCSEEEE-----EEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCccEeeec--cCCEEEEEECCCCcceeeEEE-----EEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEE
Confidence            889998777  556666643334689999999     88777652221111223456688999999999999988

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.87  E-value=3.2e-21  Score=223.47  Aligned_cols=236  Identities=15%  Similarity=0.170  Sum_probs=154.7

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      .+|.|.++++.|+|.|+|.|.|..|...     ..+.+.+.    .+|.+.. .....+..|..+.|.|.+.|.|.|.|+
T Consensus       103 ~sL~I~~v~~~D~G~Y~C~a~N~~g~~~-----~~~~l~V~----~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~  172 (423)
T 3qs7_E          103 VSMVILKMTETQAGEYLLFIQSEATNYT-----ILFTVSIR----NTLLYTL-RRPYFRKMENQDALVCISESVPEPIVE  172 (423)
T ss_dssp             EEEEESSCCSSSCSEEEEEEEC--CEEE-----EEEEEEEC---------CE-EEEEEEECSSSSCEEEEEEESSCCEEE
T ss_pred             EEEEEeecCcccCEEEEEEEEcCCCcEE-----EEEEEEEe----cCccccc-cCCcEeccCCceEEEEEEeeecCCeEE
Confidence            3689999999999999999999877542     33555554    2333321 112234568888999999999999999


Q ss_pred             EEECCEEeecCCcEEEEecCCeeEEEE-eecCCCCCEEEEEEEEeCCCceEEE-EEEeeccCCccccCCCCCCCeEEeeC
Q psy8139         486 WYKDGFEIFSSRRQRIVTDNDISTLII-HQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMG  563 (1101)
Q Consensus       486 W~~~g~~~~~~~~~~~~~~~~~~~l~I-~~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~~~p~~~~~~~~~~~~~v~~g  563 (1101)
                      |++++..+..... ..  ...  .... .-+...|+|.|+|.|.|..|..... ..|.|..+|....     ....+..|
T Consensus       173 W~k~~~~~~~~~~-~~--~~~--~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~-----~~~~v~~G  242 (423)
T 3qs7_E          173 WVLCDSQGESCKE-ES--PAV--VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL-----PQLFLKVG  242 (423)
T ss_dssp             EEEC----------------C--EEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSST-----TEEEEETT
T ss_pred             EEECCCCCccccc-cc--ccc--ccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCC-----CceEEeCC
Confidence            9998875432100 00  000  0000 1125789999999999999986553 6777777665521     24578899


Q ss_pred             CEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEE-e-----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         564 EIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEIT-H-----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       564 ~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~-~-----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +.+.|.|.+.| .|.+.+.|+++|..+.....+... .     .....+|.|.++...|.|.|+|.|.|.   ...++.|
T Consensus       243 ~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L  319 (423)
T 3qs7_E          243 EPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALV  319 (423)
T ss_dssp             SCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEE
Confidence            99999999999 677999999999887654222111 0     112457999999999999999999998   6677788


Q ss_pred             EEecCCCC---CCccEEEEecCCeEEEEeec
Q psy8139         637 TVTDRPLP---PGKAKVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       637 ~v~~~P~~---P~~~~~~~~~~~sv~lsW~~  664 (1101)
                      .|..+|..   |....+....+.++.|.|..
T Consensus       320 ~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~  350 (423)
T 3qs7_E          320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRF  350 (423)
T ss_dssp             EEESSCEEEEC---CEECCCTTCCCCEEEEE
T ss_pred             EEEeCCcceEcCCCccEEecCCCeEEEEEEE
Confidence            88866531   22223334456777888875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.86  E-value=7.7e-21  Score=209.40  Aligned_cols=224  Identities=21%  Similarity=0.302  Sum_probs=174.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ...|.|.+++..|+|.|+|.|.|..|...    +..+.+.+.    .+|.+...|....+..|+++.|.|.+.+.|.+.+
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~----~~~~~l~v~----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v  132 (291)
T 1qz1_A           61 SSTLTIYNANIDDAGIYKCVVTAEDGTQS----EATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI  132 (291)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTSCEE----EEEEEEEEE----CCSEEEECCSSEEEETTSCEEECCEEECSSCCEE
T ss_pred             eEEEEEecCCCCCCEEEEEEEEcCCCCee----EEEEEEEee----ccccccCCCCcccccCCCeEEEEEEeccCCCCEE
Confidence            46899999999999999999999886421    233455543    5677888888889999999999999999999999


Q ss_pred             EEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEeeccCCccccCCCCCCCeEE
Q psy8139         485 SWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRLEAPPTIRLPKQYEDGLLF  560 (1101)
Q Consensus       485 ~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V~~~p~~~~~~~~~~~~~v  560 (1101)
                      .|++++..+...  .++... .+  ..|.|.++...|+|.|+|.|.|..+...  ....|.|..+|.+...+.. ....+
T Consensus       133 ~W~~~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~  208 (291)
T 1qz1_A          133 IWKHKGRDVILKKDVRFIVL-SN--NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSI-VNATA  208 (291)
T ss_dssp             EEEETTSCSSTTCCTTEEEC-TT--SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE-EEEET
T ss_pred             EEEECCEEcccCCCceEEEc-cC--CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccc-ccccc
Confidence            999998876533  233322 22  2799999999999999999999765433  3466777777766543221 12355


Q ss_pred             eeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc--eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       561 ~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ..|+.+.|.|.+.|.|.|.+.|+++|..+.....  ...........|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus       209 ~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  288 (291)
T 1qz1_A          209 NLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV  288 (291)
T ss_dssp             TSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEE
Confidence            6799999999999999999999999998876531  12223344578999999999999999999999999888888887


Q ss_pred             ec
Q psy8139         639 TD  640 (1101)
Q Consensus       639 ~~  640 (1101)
                      ..
T Consensus       289 ~~  290 (291)
T 1qz1_A          289 FA  290 (291)
T ss_dssp             EC
T ss_pred             Ec
Confidence            63

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.86  E-value=7.3e-21  Score=209.59  Aligned_cols=223  Identities=21%  Similarity=0.351  Sum_probs=171.8

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|...    +..+.+.+.    .+|.+...+....+..|+++.|.|.+.+.|.+.+.
T Consensus        60 ~~L~i~~~~~~D~G~Y~C~~~n~~g~~~----~~~~~l~v~----~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~  131 (291)
T 2wim_A           60 SRLTIYNANIEDAGIYRCQATDAKGQTQ----EATVVLEIY----QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS  131 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEE----EEEEEEEEE----CCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEE
T ss_pred             EEEEEccCCcccCEEEEEEEecccCceE----EEEEEEEec----CCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEE
Confidence            5799999999999999999999877542    233444443    45666666777889999999999999999999999


Q ss_pred             EEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEeeccCCccccCCCCCCCeEEe
Q psy8139         486 WYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRLEAPPTIRLPKQYEDGLLFE  561 (1101)
Q Consensus       486 W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V~~~p~~~~~~~~~~~~~v~  561 (1101)
                      |++++..+..  ..++.....   ..|.|.++...|+|.|+|.+.|..+...  ....+.|..+|.+..++.. ....+.
T Consensus       132 W~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~-~~~~~~  207 (291)
T 2wim_A          132 WLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-FNATAE  207 (291)
T ss_dssp             EECC----CBCCCSSEEECTT---SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSE-EECCSS
T ss_pred             EEECCccccccCCceEEEccC---CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCccc-ccceec
Confidence            9999987764  333433322   2799999999999999999999876543  3456777778876544321 122456


Q ss_pred             eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      .|+.+.|.|.+.|.|.+.+.|+++|..+..+..+.+.  .....|.|.++...|.|.|+|.|.|..|....++.+.|..+
T Consensus       208 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  285 (291)
T 2wim_A          208 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ  285 (291)
T ss_dssp             SCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             CCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence            7999999999999999999999999999877666543  33578999999999999999999999999999999998866


Q ss_pred             C
Q psy8139         642 P  642 (1101)
Q Consensus       642 P  642 (1101)
                      +
T Consensus       286 ~  286 (291)
T 2wim_A          286 H  286 (291)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.85  E-value=5.6e-20  Score=211.79  Aligned_cols=293  Identities=18%  Similarity=0.228  Sum_probs=206.6

Q ss_pred             ccceEEEcCccCCc------cEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe
Q psy8139         404 EDTELMVSGLEPGW------RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE  477 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d------~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~  477 (1101)
                      .+++|.|.+++..|      +|.|+|.|.|..|...    +..+.+.+.    .+|.+...+....+.+|++++|.|.+.
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~----s~~~~v~v~----~~p~~~~~~~~~~v~~G~~v~l~C~~~  128 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII----SRDVHVRAV----VAQYYEADVNKEHVIRGNSAVIKCLIP  128 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE----CCCEEEEEE----CCCCCCCBCCCEEEETTSCEEECCBCC
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEE----ecceEEEEc----cccccccCccceeeecCCcEEEEEECc
Confidence            45689999999987      9999999999888532    233555543    345555667778899999999999998


Q ss_pred             ccCC---CeEEEEECCEEeec-----CCcEEEEecCCeeEEEEeecCCCCC-EEEEEEEEeCCCceEE-E---EEEeecc
Q psy8139         478 GIPT---PKVSWYKDGFEIFS-----SRRQRIVTDNDISTLIIHQAALMDE-GEIKCTATNRAGHSIT-K---ARLRLEA  544 (1101)
Q Consensus       478 g~p~---~~v~W~~~g~~~~~-----~~~~~~~~~~~~~~l~I~~l~~~d~-g~Y~C~a~n~~g~~~~-s---~~l~V~~  544 (1101)
                      +.+.   +.+.|++++..+..     ..++.+...   +.|.|.++...|+ |.|+|.+.|..+.... +   ..|.|..
T Consensus       129 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~  205 (388)
T 2v5m_A          129 SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE  205 (388)
T ss_dssp             TTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTT---SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEEC
T ss_pred             CCCCCCcceEEEEeCCCcccccccCCCCcEEEccC---CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEec
Confidence            8654   68999999876532     233433322   2799999999999 9999999998654332 1   2456655


Q ss_pred             CCccc---cCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecC------CCCceEEEeecceEEEEEccCCCCC
Q psy8139         545 PPTIR---LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT------SGGRYEITHTDRYLNLRISDARRAD  615 (1101)
Q Consensus       545 ~p~~~---~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~------~~~~~~~~~~~~~~sl~i~~l~~~~  615 (1101)
                      ++...   .+........+..|+.+.|.|.+.|.|.+.+.|++++..+.      ...++..    ....|.|.++...|
T Consensus       206 ~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d  281 (388)
T 2v5m_A          206 PISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVED  281 (388)
T ss_dssp             CCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGG
T ss_pred             CCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHH
Confidence            42211   11112234567889999999999999999999999754332      1222221    24589999999999


Q ss_pred             CeEEEEEEEeCCCCceeEEEEEEecCCCCCC-ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccC
Q psy8139         616 RGEYQAHGVNSLGEDVASFLVTVTDRPLPPG-KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLP  694 (1101)
Q Consensus       616 ~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~-~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~  694 (1101)
                      .|.|+|.|.|..|.......|.|..+|.... ........+..+.|.|...+.                           
T Consensus       282 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~---------------------------  334 (388)
T 2v5m_A          282 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN---------------------------  334 (388)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEE---------------------------
T ss_pred             CeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccc---------------------------
Confidence            9999999999999888888888886653211 112344567788999985211                           


Q ss_pred             CCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         695 DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       695 ~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                             ....+.|...    |.++                  .   .....++|.++.......|.|.|.|..|.
T Consensus       335 -------p~p~i~W~~~----g~~i------------------~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  378 (388)
T 2v5m_A          335 -------PIKTVSWMKD----GKAI------------------G---HSESVLRIESVKKEDKGMYQCFVRNDRES  378 (388)
T ss_dssp             -------CCCEEEEEET----TEEC------------------S---CCSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             -------cCCeEEEEEC----CEEC------------------c---cCCCEEEEecCChhhCEEEEEEEEcCCCc
Confidence                   0124667532    1111                  0   23467999999999999999999999996

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=218.04  Aligned_cols=254  Identities=14%  Similarity=0.139  Sum_probs=173.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|....  .+..+.+.+...+..+|.+...+....+..|+.+.|.|.+.|.|++  
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~--~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  146 (523)
T 2rcj_C           69 SASLAISGLEAEDESDYYCASWNSSDNSYV--FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV  146 (523)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCcccc--ccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCce
Confidence            357999999999999999999998764211  1223455554444567877777777778889999999999998764  


Q ss_pred             eEEEEECCEEeecCCcEEEE--ecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee----ccCCccccCC
Q psy8139         483 KVSWYKDGFEIFSSRRQRIV--TDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL----EAPPTIRLPK  552 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~--~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V----~~~p~~~~~~  552 (1101)
                      .++|+++|..+.........  ..++    .+.|.|.++...|+|.|+|.|.|..|.......+.+    ..+|.+...+
T Consensus       147 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~  226 (523)
T 2rcj_C          147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLA  226 (523)
T ss_pred             EEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecC
Confidence            89999999877543222111  1111    136999999999999999999999887655554322    2344433111


Q ss_pred             CCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEECCeecCCCCceEEEeecc----eEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         553 QYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLHNGEPLTSGGRYEITHTDR----YLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       553 ~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~~g~~l~~~~~~~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .   ...+..|+.+.|.|.+.|. |.+ .+.|+++|..+.......+...++    ...|.|.++...| |.|+|.|.|.
T Consensus       227 ~---~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~  302 (523)
T 2rcj_C          227 P---SSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHK  302 (523)
T ss_pred             C---CcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeC
Confidence            1   1245679999999999987 767 899999987754211111111111    3579999999999 9999999999


Q ss_pred             CCCceeEEEEEEecCCC----CCCccEEEEecCCeEEEEeecC
Q psy8139         627 LGEDVASFLVTVTDRPL----PPGKAKVVMTLGKSVTLSWSEP  665 (1101)
Q Consensus       627 ~G~~~~s~~l~v~~~P~----~P~~~~~~~~~~~sv~lsW~~p  665 (1101)
                      .|.......+.+...|.    +|.... ....+..+.|.|...
T Consensus       303 ~g~~~~~~~l~v~~~P~~~~~~p~~~~-~v~~g~~~~l~C~~~  344 (523)
T 2rcj_C          303 PSNTKVDKRVEPLSLPSVFLFPPKPKD-TLMISRTPEVTCVVV  344 (523)
T ss_pred             CCCcceEEecCCCcCceEEecCCCchh-hcccCCceEEEEEEe
Confidence            99876666665543331    121111 123467888888853

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=186.73  Aligned_cols=191  Identities=27%  Similarity=0.490  Sum_probs=168.6

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.+...|.++.+..|+++.|.|.+.+.|.+.+.|++++..+.....+.+...+....|.|.++...|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            35788888899999999999999999999999999999999999888888888778778999999999999999999999


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                      ..|.......|.|..+|.+...........+..|..+.|.|.+.+.|.+.+.|++++..+..+..+.+...+....|.|.
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  164 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK  164 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEES
T ss_pred             CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEc
Confidence            99988888889998877665443344456778899999999999999999999999999988888887777667899999


Q ss_pred             cCCC-CCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         610 DARR-ADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       610 ~l~~-~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      ++.. .|.|.|+|.|.|..|.......|.|.+
T Consensus       165 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          165 NVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9985 899999999999999988888888764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.85  E-value=4.6e-21  Score=214.03  Aligned_cols=224  Identities=20%  Similarity=0.281  Sum_probs=177.4

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-------
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-------  478 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-------  478 (1101)
                      ..|.|.+++..|+|.|+|.|.|..|....     .+.+.+.    .+|.+...+....+..|+.+.|.|.+.+       
T Consensus        61 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~-----~~~l~v~----~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~  131 (317)
T 2y25_A           61 CTLLITEFSKKDAGIYEVILKDDRGKDKS-----RLKLVDE----AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV  131 (317)
T ss_dssp             EEEEETTCCSTTCSCEEEEEESSSCEEEE-----EECCSTH----HHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEB
T ss_pred             EEEEEccCCcccCeEEEEEEECCCCcEEE-----EEEEEEe----cCccccccCCceecccCCCeEEEeeccccEEEEEe
Confidence            58999999999999999999998875421     1222211    2233333344455667777888887766       


Q ss_pred             ---cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeecc-----------
Q psy8139         479 ---IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA-----------  544 (1101)
Q Consensus       479 ---~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~-----------  544 (1101)
                         .|.+.+.|++++..+....++.....++...|.|.++...|+|.|+|.|.|..|....+..+.|..           
T Consensus       132 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~  211 (317)
T 2y25_A          132 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL  211 (317)
T ss_dssp             SSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhccc
Confidence               789999999999988877778877777777899999999999999999999999888887777642           


Q ss_pred             ---------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee-cceEEEEEccCCCC
Q psy8139         545 ---------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRA  614 (1101)
Q Consensus       545 ---------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~sl~i~~l~~~  614 (1101)
                               +|.+..  ..+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+... +....|.|.++...
T Consensus       212 ~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  289 (317)
T 2y25_A          212 KQAAIAEKNRARVLG--GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA  289 (317)
T ss_dssp             HHHHHHTTTSCEEEE--BCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCST
T ss_pred             CCcccCcCCCCcccc--cCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHH
Confidence                     121111  112345788999999999999999999999999999988777777665 55679999999999


Q ss_pred             CCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         615 DRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       615 ~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      |.|.|+|.|.|..|....+..|.|..
T Consensus       290 d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          290 DSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             TCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             HCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            99999999999999998888888873

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.84  E-value=4.4e-21  Score=218.81  Aligned_cols=270  Identities=15%  Similarity=0.067  Sum_probs=188.9

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      ..+.|.|.++...|+|.|.|.+.|..+     .+.+.|...+.+|.. .+      ....+++|.|.....    +... 
T Consensus        65 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~-----~~~l~V~~~~~~~~~-~v------~~G~~v~l~C~~~~~----p~~~-  127 (363)
T 1wio_A           65 GNFPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFGLTANSDT-HL------LQGQSLTLTLESPPG----SSPS-  127 (363)
T ss_dssp             TCCCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEEEEESSCS-SE------ESBSCEEEEEECCTT----CCCC-
T ss_pred             CeEEEEECCCCHHHCEEEEEEEEECCC-----cEEEEEEeCCCCCce-EE------ecCCCEEEEEEcCCC----CCCe-
Confidence            356799999999999999999987754     244444433333332 11      234567888876421    1111 


Q ss_pred             EEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeE
Q psy8139         384 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT  463 (1101)
Q Consensus       384 ~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~  463 (1101)
                       +.|...+..       .......|.|.+++..|.|.|+|.|.|..+...     ..+.+.+.    .+|.   .+....
T Consensus       128 -v~W~~~~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~-----~~~~l~v~----~~p~---~~~~~~  187 (363)
T 1wio_A          128 -VQCRSPRGK-------NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-----FKIDIVVL----AFQK---ASSIVY  187 (363)
T ss_dssp             -EEEECSSSC-------EEEESSEEEECSBCGGGCEECEEEEEETTEEEE-----ECCEECEE----CCSC---SEEEEE
T ss_pred             -EEEEcCCCc-------ccccceEEEEeeCChhcCCEEEEEEecCCCeEE-----EEEEEEEe----cCCC---CCCceE
Confidence             222221111       112446899999999999999999998654322     22333333    2222   125667


Q ss_pred             EccCCeEEEEEEEec-----cCCCeEEEEECCEEeec--------CCcEEEEe----------cCCeeEEEEeecCCCCC
Q psy8139         464 ALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFS--------SRRQRIVT----------DNDISTLIIHQAALMDE  520 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~--------~~~~~~~~----------~~~~~~l~I~~l~~~d~  520 (1101)
                      +.+|+.+.|.|.+.+     .|.|.++|+++|..+..        ...+.+..          .++...|.|.++...|+
T Consensus       188 ~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  267 (363)
T 1wio_A          188 KKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA  267 (363)
T ss_dssp             EETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGC
T ss_pred             EecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcC
Confidence            889999999998877     78899999999987654        34444432          22344899999999999


Q ss_pred             EEEEEEEEeC--CCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCe--eEEEECCeecCCCCceE
Q psy8139         521 GEIKCTATNR--AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT--ARWLHNGEPLTSGGRYE  596 (1101)
Q Consensus       521 g~Y~C~a~n~--~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~--v~W~~~g~~l~~~~~~~  596 (1101)
                      |.|+|.|.|.  .|.....+.|.|...                .|.++.|.|.+.+.|.|.  +.|++++..+..     
T Consensus       268 G~Y~C~a~n~~~~g~~~~~~~l~V~~v----------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----  326 (363)
T 1wio_A          268 GSGNLTLALEAKTGKLHQEVNLVVMRA----------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----  326 (363)
T ss_dssp             EEEEEEECBTTTTCCEEEEEEEEEEEE----------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----
T ss_pred             cEEEEEEEEhhhcCeEEEEEeEEEEEe----------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-----
Confidence            9999999999  898888888888621                177788999999999888  999999977653     


Q ss_pred             EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       597 ~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                            ...+.|.++...|.|.|+|.|.|. |....+..+.|
T Consensus       327 ------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          327 ------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             ------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             ------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence                  334677889999999999999964 55555555555

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.84  E-value=4.7e-20  Score=211.92  Aligned_cols=296  Identities=20%  Similarity=0.269  Sum_probs=200.1

Q ss_pred             cceEEEcCc-cCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe-ccCCC
Q psy8139         405 DTELMVSGL-EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTP  482 (1101)
Q Consensus       405 ~~~l~i~~L-~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~-g~p~~  482 (1101)
                      ++++.|.+. ...|+|.|+|.|.|..|.....    ...+.+...   ++.....+..+.+..|+.+.|.|... +.|.+
T Consensus        61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~----~~~l~v~~~---~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~  133 (384)
T 3kld_A           61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSR----EAKLQFAYL---ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL  133 (384)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEECC----CEEEEEEEE---CCCSCCCCCCEEEEETCCEEECCCCCSEESCE
T ss_pred             CCEEEEcCCCCcccCEEEEEEEEcCcccEEec----ceEEEEecc---cccccCCCCceeEEcCCCeEEecCCCCCCCCe
Confidence            356777765 7899999999999998864322    233333211   11111223456788999999999764 56778


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE---EEEeec-------cCCccccCC
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK---ARLRLE-------APPTIRLPK  552 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s---~~l~V~-------~~p~~~~~~  552 (1101)
                      .+.|++++.++....+..+....  ..|.|.++...|+|.|+|.|.|..|.....   ..+.+.       .+|.+..  
T Consensus       134 ~~~W~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~--  209 (384)
T 3kld_A          134 SYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV--  209 (384)
T ss_dssp             EEEEEETTEECCCSSSEEECTTT--CCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEE--
T ss_pred             EEEEEECCCCCEeeccEEEEcCC--CcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceee--
Confidence            99999999887655444333222  379999999999999999999988764321   222221       1222221  


Q ss_pred             CCCCCeEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       553 ~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      ..+....+..|+.+.|.|.+.|.|.|.+.|+++ +..+.....  .  ....+.|.|.++...|.|.|+|.|.|..|...
T Consensus       210 ~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  285 (384)
T 3kld_A          210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR--R--HKSNGILEIPNFQQEDAGSYECVAENSRGKNV  285 (384)
T ss_dssp             ECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE--E--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce--e--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            112345678899999999999999999999995 445543221  1  12356899999999999999999999999988


Q ss_pred             eEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEe
Q psy8139         632 ASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRW  708 (1101)
Q Consensus       632 ~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W  708 (1101)
                      ....+.|..+|.   .|.+  .....+.++.|.|...+.                                  ....+.|
T Consensus       286 ~~~~l~v~~~P~~~~~~~~--~~v~~g~~v~l~C~~~g~----------------------------------P~p~i~W  329 (384)
T 3kld_A          286 AKGQLTFYAQPNWVQIIND--IHVAMEESVFWECKANGR----------------------------------PKPTYRW  329 (384)
T ss_dssp             EEEEEEEEEEEEEEECCCC--EEECTTCCEEEECEEEEE----------------------------------SCCEEEE
T ss_pred             EEEEEEEecCCccccCCCc--eEecCCCCEEEEeECCcc----------------------------------CCCeEEE
Confidence            888888876653   2222  334567788888885321                                  1125678


Q ss_pred             eCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         709 EPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       709 ~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      ...    |.++.         .... ..     .....+.|.++.+.+...|.|.|.|.+|.
T Consensus       330 ~k~----g~~l~---------~~~~-~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  372 (384)
T 3kld_A          330 LKN----GDPLL---------TRDR-IQ-----IEQGTLNITIVNLSDAGMYQCVAENKHGV  372 (384)
T ss_dssp             EET----TEECC---------CBTT-EE-----EETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEC----CEECC---------CCcc-EE-----EeCCEEEEeecChhhCEEEEEEEEeCCce
Confidence            642    11110         0001 11     12347899999999999999999999996

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.84  E-value=6.8e-20  Score=209.38  Aligned_cols=289  Identities=11%  Similarity=0.052  Sum_probs=194.2

Q ss_pred             EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       598 ~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      .......++.+.+|.+++.|.|+|.|.|..|.+..... .+...|.+|.++.+...+.+++.|+|.+|.           
T Consensus        52 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~-~~~~~~~~p~~l~~~~~~~~si~l~W~~p~-----------  119 (368)
T 1fnf_A           52 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISD-TIIPAVPPPTDLRFTNIGPDTMRVTWAPPP-----------  119 (368)
T ss_dssp             EECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCEEE-EECCCCCCCEEEEEESCCSSCEEEEEECCT-----------
T ss_pred             EecCCcCEEEECCCCCCCEEEEEEEEEcCCCccCceee-eecCCCcCCceeEEEEcCCCeEEEEeeCCC-----------
Confidence            34455678999999999999999999999987655432 333444577777777667777777777542           


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCc
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGW  756 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t  756 (1101)
                                                            ++++.+|.|.|+..++. .|..... ....++++|.+|.|++
T Consensus       120 --------------------------------------~~~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t  160 (368)
T 1fnf_A          120 --------------------------------------SIDLTNFLVRYSPVKNEEDVAELSI-SPSDNAVVLTNLLPGT  160 (368)
T ss_dssp             --------------------------------------TCCCSEEEEEEEETTCTTCCEEEEE-CTTCCEEEECSCCTTC
T ss_pred             --------------------------------------CCCCcEEEEEEEECCCCCccEEEEc-CCCcceEEecCCCCCC
Confidence                                                  13477888888876543 4544332 2577899999999999


Q ss_pred             eEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHH
Q psy8139         757 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFM  834 (1101)
Q Consensus       757 ~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~  834 (1101)
                      .|.|+|.|.|..|.|.+   .....    ..++.+|.++.  ...++++.+.|.++.               +++.    
T Consensus       161 ~Y~~~V~a~~~~g~s~~---~~~~~----~~~~~~P~~l~~~~~~~~sv~l~W~~p~---------------~~i~----  214 (368)
T 1fnf_A          161 EYVVSVSSVYEQHESTP---LRGRQ----KTGLDSPTGIDFSDITANSFTVHWIAPR---------------ATIT----  214 (368)
T ss_dssp             EEEEEEEEEETTEECCC---EEEEE----ECCCCCCEEEEEESCCSSEEEEEEECCS---------------SCCS----
T ss_pred             EEEEEEEEEeCCCCCCC---eEeee----cCCCCCCCccEEEEccCCEEEEEEeCCC---------------CCcC----
Confidence            99999999999998654   22222    23444555554  445677788897642               3445    


Q ss_pred             hHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eecccccccCceeecccCCCCccCCC
Q psy8139         835 LLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGYDTIVYGYDSDDLDRHYP  912 (1101)
Q Consensus       835 v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~~~~v~~~t~e~~P~~~P  912 (1101)
                              +|.|.|+..+....+....+..     ......+.+|.+.+.|.  |+|.|..|.+.....  ....+..+|
T Consensus       215 --------~Y~v~~~~~~~~~~~~~~~~~~-----~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~--~~~t~p~~P  279 (368)
T 1fnf_A          215 --------GYRIRHHPEHFSGRPREDRVPH-----SRNSITLTNLTPGTEYVVSIVALNGREESPLLIG--QQSTVSDVP  279 (368)
T ss_dssp             --------EEEEEEECSCCSSCCEEEEEET-----TCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE--EEECCCCSC
T ss_pred             --------EEEEEEecCCCCCCccEEEeCC-----CcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc--cccCCCCCC
Confidence                    8999888776555554444422     22223344444999999  999999998222221  122345678


Q ss_pred             CCChhhhhhhhhhhccccccccccchhhcccccchhhhhhcccccc-cccccccCCceeEeecCCCCCCCceeec
Q psy8139         913 TLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVLT-KKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       913 ~~v~~~~~~~n~t~v~vp~~~~nG~i~gY~I~~~~~~y~~~~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      .++.+...  +.++|.|-+..+.+.|.||.|     +|...++... ....+ .+....++|.+|.+|+.|.|+.
T Consensus       280 ~~l~~~~~--~~~sv~l~W~~p~~~i~~Y~v-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V  346 (368)
T 1fnf_A          280 RDLEVVAA--TPTSLLISWDAPAVTVRYYRI-----TYGETGGNSPVQEFTV-PGSKSTATISGLKPGVDYTITV  346 (368)
T ss_dssp             EEEEEEEE--ETTEEEEEEECCSSCCSEEEE-----EEEETTCCSCCEEEEE-ETTCCEEEECSCCTTCCEEEEE
T ss_pred             CeeEEEec--CCCEEEEEeeCCCCccceEEE-----EEEECCCCCccEEEEc-CCCeeEEEecCCCCCCEEEEEE
Confidence            89988877  556666633333346999999     7776654322 22222 2355688999999999999998

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.84  E-value=3e-20  Score=215.27  Aligned_cols=299  Identities=20%  Similarity=0.365  Sum_probs=206.4

Q ss_pred             ceEEEc----CccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCee-eecCceeEEccCCeEEEEEEE-ecc
Q psy8139         406 TELMVS----GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQV-EGI  479 (1101)
Q Consensus       406 ~~l~i~----~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~-~~~p~~~~v~~g~~v~L~C~~-~g~  479 (1101)
                      +.|.|.    +++..|+|.|+|.|.|..|...    +..+.+.+..    +|.+ ...+....+.+|++++|.|.+ .+.
T Consensus        73 ~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~----s~~~~l~V~~----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~  144 (404)
T 3p3y_A           73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL----SNRIRLQVSK----SPLWPKENLDPVVVQEGAPLTLQCNPPPGL  144 (404)
T ss_dssp             CCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE----EEEEEEEECC----CCCCCCCCCCCEEEETTSCEEECCCCCCCS
T ss_pred             ceEEEEeccCCCCccCCEEEEEEEEcCCCeEe----eeeEEEEEec----cCccccCCCCCeEEccCCcEEEEeCCCCCC
Confidence            445554    8889999999999999877542    2335555542    2222 233455788999999999998 889


Q ss_pred             CCCeEEEEECCEE-eecCCcEEEEecCCeeEEEEeecCCCC-CEEEEEEEEeCCCceEEE---EEEeecc-------CCc
Q psy8139         480 PTPKVSWYKDGFE-IFSSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGHSITK---ARLRLEA-------PPT  547 (1101)
Q Consensus       480 p~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~l~I~~l~~~d-~g~Y~C~a~n~~g~~~~s---~~l~V~~-------~p~  547 (1101)
                      |.+.+.|++++.. +....+......+   .|.|.++...| +|.|+|.|.|..|.....   ..+.|..       +|.
T Consensus       145 p~~~v~W~~~~~~~~~~~~~~~~~~~~---~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~  221 (404)
T 3p3y_A          145 PSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS  221 (404)
T ss_dssp             SCCEEEEECTTSCBCCCCSSEEECTTS---CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCC
T ss_pred             CCCeEEEeCCCccccCCCCcEEEcCCC---cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCc
Confidence            9999999998743 3333343332222   79999999999 599999999988864432   3444433       333


Q ss_pred             cccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       548 ~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      +..+........+..|+.+.|.|.+.|.|.+.+.|+++|..+..... ..  ......|.|.++...|.|.|+|.|.|..
T Consensus       222 ~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (404)
T 3p3y_A          222 FMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKM  298 (404)
T ss_dssp             BSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             cccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCC
Confidence            33332222345688899999999999999999999999998875543 22  2235689999999999999999999999


Q ss_pred             CCceeEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceE
Q psy8139         628 GEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF  704 (1101)
Q Consensus       628 G~~~~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si  704 (1101)
                      |.......+.|..+|.   .|.+  .....+..++|.|...+.                                  ...
T Consensus       299 g~~~~~~~l~V~~~p~~~~~~~~--~~v~~g~~~~l~C~~~g~----------------------------------p~p  342 (404)
T 3p3y_A          299 GSIRHTISVRVKAAPYWLDEPKN--LILAPGEDGRLVCRANGN----------------------------------PKP  342 (404)
T ss_dssp             CEEEEEEEEEEEEEEEEEECCCC--EEECTTCCEEEECEEEEE----------------------------------SCC
T ss_pred             CcEEEEEEEEEeCCCeeeccCCc--ceeecCCcEEEEEEcccc----------------------------------CCC
Confidence            9988888888887652   2333  233457788898875321                                  112


Q ss_pred             EEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       705 ~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      .+.|...    |.++..        .......    ......++|.++.......|.|.|.|..|.
T Consensus       343 ~v~W~~~----g~~~~~--------~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  392 (404)
T 3p3y_A          343 TVQWMVN----GEPLQS--------APPNPNR----EVAGDTIIFRDTQISSRAVYQCNTSNEHGY  392 (404)
T ss_dssp             EEEEEET----TEEGGG--------SCCCTTE----EEETTEEEESSCCSSCCCEEEEEEEETTEE
T ss_pred             ceEEEEC----CEecCC--------CCCCceE----EecCCEEEEeecCHHHCEEEEEEEEeCCCc
Confidence            4677541    111100        0000000    012357899999999999999999999997

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.84  E-value=1.8e-20  Score=219.77  Aligned_cols=313  Identities=13%  Similarity=0.134  Sum_probs=191.8

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCC-CCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDS-PSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~-~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      .+.|.|.++...|+|.|+|.|.|..|...+....+.+..++.+|. ....... .......++|.|....   +.+.. .
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~-v~~~~~~~~~~~g~~~~l~C~~~g---~~p~~-~  148 (438)
T 1qgc_4           74 DFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPT-VSIFPPSSEQLTSGGASVVCFLNN---FYPKD-I  148 (438)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCE-EEEECCCHHHHHTTEEEEEEEEEE---EBSSC-E
T ss_pred             cEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCE-EEecCCChhhccCCceEEEEEEcc---ccCCC-c
Confidence            346999999999999999999887775545555666644332221 1110000 0011345666665421   00110 1


Q ss_pred             EEEEEecCC----Cce--EEcC----ccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCC
Q psy8139         384 LVEHRRTGS----PYW--VRAS----PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  453 (1101)
Q Consensus       384 ~v~~~~~~~----~~w--~~~~----~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P  453 (1101)
                      .+.|...+.    ...  ....    ........|.|.++...|.|.|+|.|.|..|..       .+.+.+...  .++
T Consensus       149 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-------~~~~~~~~~--~~~  219 (438)
T 1qgc_4          149 NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-------PIVKSFNRN--ECE  219 (438)
T ss_dssp             EEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-------CEEEEEETT--C-C
T ss_pred             EEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-------ceecccccc--cce
Confidence            122221110    000  0000    000012468999999999999999999987653       233333321  223


Q ss_pred             eeeecCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEEee-----------------cCCcEEEEec--CCeeEE
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFEIF-----------------SSRRQRIVTD--NDISTL  510 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~l  510 (1101)
                      .....|....+..|++++|.|.+.|.|  .+.+.|+++  +..+.                 ...++.+...  ++...|
T Consensus       220 ~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  299 (438)
T 1qgc_4          220 VMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYL  299 (438)
T ss_dssp             CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEE
T ss_pred             eEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEE
Confidence            334456677899999999999999988  679999986  43221                 1245555443  345689


Q ss_pred             EEeecCCCCCEEEEEEEEeCCC-----ceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-e
Q psy8139         511 IIHQAALMDEGEIKCTATNRAG-----HSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-T  579 (1101)
Q Consensus       511 ~I~~l~~~d~g~Y~C~a~n~~g-----~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~  579 (1101)
                      .|.++...|+|.|+|.|.|..|     .......|.|..    +|.+...+.   ...+..|+.+.|.|.+.|. |.+ .
T Consensus       300 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~  376 (438)
T 1qgc_4          300 QMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAP---GSAAAAASMVTLGCLVKGYFPEPVT  376 (438)
T ss_dssp             EECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECC---CGGGCCSSEEEEEEEEESCBSSCCE
T ss_pred             EECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCc---ccccccCCcEEEEEEeccccCCCcE
Confidence            9999999999999999998544     222345666653    333221111   1124569999999999997 877 9


Q ss_pred             eEEEECCeecCCCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         580 ARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       580 v~W~~~g~~l~~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      +.|+++|..+.......+...+.   .+.|.|.++...+ |.|+|.|.|..|.......
T Consensus       377 v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~  434 (438)
T 1qgc_4          377 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKK  434 (438)
T ss_dssp             EEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeee
Confidence            99999988765321111111111   2468888888778 9999999999997655443

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.84  E-value=8.4e-20  Score=203.23  Aligned_cols=268  Identities=9%  Similarity=-0.023  Sum_probs=176.3

Q ss_pred             EEeeCCEEEEEEEEeec-----CCCeeEEEECCeecCCCCceEEEeecc-eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         559 LFEMGEIIKLKVSMAGM-----PPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-----p~~~v~W~~~g~~l~~~~~~~~~~~~~-~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .+..|++++|.|.+.++     |.+.+.|.++|..+..+ ++.....+. .+.|+|.++...|.|.|+|.|.|..+....
T Consensus        11 ~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~~~   89 (313)
T 2d9q_B           11 IVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILD   89 (313)
T ss_dssp             EECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCceeEE
Confidence            67889999999999997     57899999999887543 222222222 278999999999999999998664444345


Q ss_pred             EEEEEEecCCCCCCccEEEEec-CCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCC
Q psy8139         633 SFLVTVTDRPLPPGKAKVVMTL-GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP  711 (1101)
Q Consensus       633 s~~l~v~~~P~~P~~~~~~~~~-~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP  711 (1101)
                      .+.+.+..+|++|.++.+.... .++++++|.++.+ ++.                                        
T Consensus        90 ~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~-~~~----------------------------------------  128 (313)
T 2d9q_B           90 QVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPE-THL----------------------------------------  128 (313)
T ss_dssp             EEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS----------------------------------------
T ss_pred             EEEEccCCCCCCCccceeeECCCCccEEEEecCCCC-CCC----------------------------------------
Confidence            6778888899999999887774 6789999987654 222                                        


Q ss_pred             CCCCCCCcceEEEEEEeCCC------CCceeecccccCccEEEE--cCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         712 EYDGGSPVLGYLVEHRRTGS------PYWVRASPHMVEDTELMV--SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       712 ~~~~~~~i~~Y~V~~~~~~~------~~~~~~~~~~~~~~~~~i--~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                             .+.|.|+|+..+.      ..|..+... .....+++  .+|.+++.|.|+|.|.|..|.+.+++   ....+
T Consensus       129 -------~~~Y~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~---~~~~~  197 (313)
T 2d9q_B          129 -------PTSFTLKSFKSRGNCQTQGDSILDCVPK-DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ---LCLDP  197 (313)
T ss_dssp             -------CCEEEEEEEECCTTSCSCCCCEEEECCC-TTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCC---EEECG
T ss_pred             -------ceeEEEEEEecCCCcccCCcccccCCCC-CCCcEEEECccccccceeEEEEEEEECCCCCccCcc---EEEeh
Confidence                   2235555443321      123333221 23345555  56999999999999999999864221   22223


Q ss_pred             CCCCCCCCCcccccc--------cccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCC
Q psy8139         784 YQRSPAAAPSFIRAL--------HDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDN  855 (1101)
Q Consensus       784 ~~~~P~~~p~~~~~~--------~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~  855 (1101)
                      ....++.||.++...        .++.+.+.|.||..            .+...+            .|.|.|+....+.
T Consensus       198 ~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~------------~~~~~l------------~Y~v~y~~~~~~~  253 (313)
T 2d9q_B          198 MDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQP------------GLHINQ------------KCELRHKPQRGEA  253 (313)
T ss_dssp             GGGEECCCCEEEECCC-------CCSCEEEEEECCGG------------GTTSCE------------EEEEEEEESSSCC
T ss_pred             hheeccCcCceeEEEEecccccCCCCeEEEEECCCCC------------CCceeE------------EEEEEEccCCCCC
Confidence            334567788776522        24667888977421            112234            8999999433456


Q ss_pred             CCceeeeec---cccccCCCCCCCCCccCcccce--eeccccccc------CceeecccCCCCccC
Q psy8139         856 EDDYDIVET---NEHTGTGAPSDNENESDYFPEK--TIDESVYGY------DTIVYGYDSDDLDRH  910 (1101)
Q Consensus       856 ~~~~~~v~~---~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e~~P~~  910 (1101)
                      +|.......   ..+.+.+|.       +++.|+  |+|.|..|.      +..+...|.+++|..
T Consensus       254 ~w~~~~~~~~~~~~~~l~~L~-------p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~  312 (313)
T 2d9q_B          254 SWALVGPLPLEALQYELCGLL-------PATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP  312 (313)
T ss_dssp             CCEEEEEECSCEEEEEECSCC-------SCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred             CcEEcccccCcceEEEEeCCC-------CCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence            787643321   234444555       999999  999998543      677788888877753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.84  E-value=6e-20  Score=212.03  Aligned_cols=301  Identities=19%  Similarity=0.239  Sum_probs=204.4

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      .+.+|.|.+++..|+|.|+|.|.|..|.....  ...+.+.+..    .|.+  .+.+..+.+|+++.|.|.+ .+.|.+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~--~~~l~v~~~~----~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~  131 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSR--VISFRKTYLI----ASPA--KTHEKTPIEGRPFQLDCVLPNAYPKP  131 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECC--CEEEEEEEEE----CCCC--EEEEECCBTTEEEEECCCCCEEESCC
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeE--EEEEEEEEee----cCCc--CCcceeeeeCCcEEEEecCCCCCCCC
Confidence            34689999999999999999999987754321  1223333221    2222  3456678899999999995 899999


Q ss_pred             eEEEEECC---EEeec----CCcEEEEecCCeeEEEEeecCCCCCE---EEEEEEEeCCCceEEEEE---EeeccCCcc-
Q psy8139         483 KVSWYKDG---FEIFS----SRRQRIVTDNDISTLIIHQAALMDEG---EIKCTATNRAGHSITKAR---LRLEAPPTI-  548 (1101)
Q Consensus       483 ~v~W~~~g---~~~~~----~~~~~~~~~~~~~~l~I~~l~~~d~g---~Y~C~a~n~~g~~~~s~~---l~V~~~p~~-  548 (1101)
                      .+.|++++   .+...    ..++.....+   .|.|.++...|+|   .|+|.|.|..|.......   +.+..++.. 
T Consensus       132 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~  208 (395)
T 1bih_A          132 LITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSG  208 (395)
T ss_dssp             EEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSC
T ss_pred             eEEEEecCCCcCcccccccccccEEEcCCC---cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccc
Confidence            99999975   11111    2333333222   7999999999999   999999999887554322   222111110 


Q ss_pred             ---ccCC-CCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE--eecceEEEEEccCCCCCCeEEEEE
Q psy8139         549 ---RLPK-QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT--HTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       549 ---~~~~-~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                         ...| .......+..|+.+.|.|.+.|.|.+.+.|+++|..+.......+.  .......|.|.++...|.|.|+|.
T Consensus       209 ~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  288 (395)
T 1bih_A          209 YKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE  288 (395)
T ss_dssp             CCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEE
T ss_pred             ccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEE
Confidence               0000 0123557889999999999999999999999999988654332222  222234799999999999999999


Q ss_pred             EEeCCCCcee-EEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCC
Q psy8139         623 GVNSLGEDVA-SFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPS  698 (1101)
Q Consensus       623 A~N~~G~~~~-s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~  698 (1101)
                      |.|..|.... +..|.|..+|.   .|.. ......+..++|.|...+.+                              
T Consensus       289 a~n~~g~~~~~~~~l~V~~~P~~~~~~~~-~~~~~~g~~~~l~C~~~g~p------------------------------  337 (395)
T 1bih_A          289 VDNGVGKPQKHSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLP------------------------------  337 (395)
T ss_dssp             ECCSSSSCEEEEEEEEEEEEEEEEECCCS-EEEECTTSCEEEECEEEEES------------------------------
T ss_pred             EEeCCCCceEEEEEEEEEcCCccccCCCc-ceEecCCCeEEEEEEECccc------------------------------
Confidence            9999998765 78888887663   2222 24456678899999853211                              


Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                          ...+.|...    |.++.          ... ..     .....++|.++...+...|.|.|.|..|.
T Consensus       338 ----~p~v~W~~~----g~~~~----------~~~-~~-----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~  385 (395)
T 1bih_A          338 ----APNVVWSHN----AKPLS----------GGR-AT-----VTDSGLVIKGVKNGDKGYYGCRATNEHGD  385 (395)
T ss_dssp             ----CCCCEEEET----TEECC----------SSS-EE-----EETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             ----CCeeEEEEC----CEECC----------CCc-eE-----EECCEEEEeeCCcccCEEEEEEEEccCCC
Confidence                012567642    11110          000 11     11238999999999999999999999996

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.83  E-value=2.2e-19  Score=184.99  Aligned_cols=189  Identities=28%  Similarity=0.485  Sum_probs=162.2

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVT-DNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.|...|.+..+..|++++|.|.+.+.|.+.+.|++++..+... .++.+.. .++...|.|.++...|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5788888899999999999999999999999999999999988654 3444443 4556699999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCCCC--CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQYE--DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL  606 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~~~--~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl  606 (1101)
                      |..|.......|.|..+|.+..++...  ....+..|..+.|.|.+.|.|.+.+.|++++..+....++.+...+....|
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L  162 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL  162 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEE
T ss_pred             ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEE
Confidence            999988888899998877765544322  234677899999999999999999999999999987777877777778899


Q ss_pred             EEcc-CCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         607 RISD-ARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       607 ~i~~-l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      .|.+ +...|.|.|+|.|.|..|....+..|.|.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999 99999999999999999998888888775

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.4e-19  Score=199.20  Aligned_cols=218  Identities=16%  Similarity=0.204  Sum_probs=162.9

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCC-CeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT-PKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~-~~v  484 (1101)
                      ..|.|.+++..|+|.|+|.|.|  |.      +..+.+.+.    .+|.+...+.+..+.+|+.+.|.|.+.+ |. +.+
T Consensus        57 ~~L~i~~~~~~d~G~Y~C~~~n--g~------~~~~~l~V~----~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v  123 (290)
T 2o26_X           57 NEWIQEKAEATRTGTYTCSNSN--GL------TSSIYVFVR----DPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQY  123 (290)
T ss_dssp             SEEEETTCCGGGCEEEEEEESS--SC------EEEEEEEEE----CSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEE
T ss_pred             ceEEEeccCHHhCeEEEEEeeC--Cc------cEEEEEEEe----CCCcccccccceEEecCCeEEEeCcCCC-CCCceE
Confidence            7899999999999999999998  43      233455544    2333335566788899999999999996 77 899


Q ss_pred             EEE-ECCEEeecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEEeCCCceEE-EEEEeec----cCCccccCCCCCCC
Q psy8139         485 SWY-KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTATNRAGHSIT-KARLRLE----APPTIRLPKQYEDG  557 (1101)
Q Consensus       485 ~W~-~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~~g~~~~-s~~l~V~----~~p~~~~~~~~~~~  557 (1101)
                      +|+ ++|..+....++.....+   .|.|.++...|+| .|+|.|.|..|...+ ...|.|.    .+|.+...+..   
T Consensus       124 ~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~---  197 (290)
T 2o26_X          124 SLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS---  197 (290)
T ss_dssp             EEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSB---
T ss_pred             EEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCc---
Confidence            995 678777655544443332   7999999999999 999999998555333 4677766    56766544432   


Q ss_pred             eEEeeCCEEEEEEEEeecCCCe-eEEEECCeec----CCCCceEEE---eecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPL----TSGGRYEIT---HTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l----~~~~~~~~~---~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..+..|+.+.|.|.+.|.|.+. +.|++++..+    .......+.   .......|.|.++...|.|.|+|.|.|..|.
T Consensus       198 ~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~  277 (290)
T 2o26_X          198 HLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS  277 (290)
T ss_dssp             CCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCE
T ss_pred             ceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCc
Confidence            3677899999999999999986 9999998773    322222221   1223678999999999999999999999999


Q ss_pred             ceeEEEEEEecCC
Q psy8139         630 DVASFLVTVTDRP  642 (1101)
Q Consensus       630 ~~~s~~l~v~~~P  642 (1101)
                      ......|.|..+|
T Consensus       278 ~~~~~~l~V~~~P  290 (290)
T 2o26_X          278 ANVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEEEECC----
T ss_pred             EEEEEEEEEEeCC
Confidence            9888888887654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.83  E-value=1.9e-19  Score=184.93  Aligned_cols=185  Identities=26%  Similarity=0.512  Sum_probs=159.0

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.|...|.+..+.+|++++|.|.+.+.|.+.+.|+++|..+....  .+.+...++...|.|.++...|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            56788888889999999999999999999999999999998776543  5555556677899999999999999999999


Q ss_pred             eCCCceEEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEE
Q psy8139         529 NRAGHSITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN  605 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~s  605 (1101)
                      |..|.......|.|..   +|.+...+   ....+..|..+.|.|.+.+.|.+.+.|+++|..+..+..+.+...+...+
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRL---QSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS  160 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECC---CCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCC---ccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEE
Confidence            9999888888888873   45444333   34578889999999999999999999999999998877888777777778


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       606 l~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      |.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            999999999999999999999998888877776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.83  E-value=1.6e-21  Score=246.49  Aligned_cols=245  Identities=19%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec---CceeEEccCCeEEEEEEEeccCC
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA---LHDTTALEDEKVEFTVQVEGIPT  481 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~---p~~~~v~~g~~v~L~C~~~g~p~  481 (1101)
                      ...|.|.+++..|.|.|+|.|.|..|..     +..+.+.+.    .+|.+...   +....+..|+.++|.|.+.|.|.
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-----~~~~~l~V~----~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~  359 (772)
T 3v2a_R          289 LSTLTIDGVTRSDQGLYTCAASSGLMTK-----KNSTFVRVH----EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP  359 (772)
T ss_dssp             EEEEEESSCCSTTCSEEEEEEECSSCEE-----EEEEEEEEE----CCCC------------------------------
T ss_pred             EEEEEECcCCcCCCeEEEEEEEcCCcce-----eEEEEEEEe----CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC
Confidence            3579999999999999999999977643     233555554    23433322   34567889999999999999999


Q ss_pred             CeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE--EEEEeeccCCccccCCCCCCCeE
Q psy8139         482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLL  559 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~--s~~l~V~~~p~~~~~~~~~~~~~  559 (1101)
                      +.+.|+++|..+......  .   +...|.|.++...|+|.|+|.|.|..|....  ...|.|..+|.+...........
T Consensus       360 ~~v~W~~~g~~l~~~~~~--~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~  434 (772)
T 3v2a_R          360 PEIKWYKNGIPLESNHTI--K---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS  434 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEECCEeCCCCceE--c---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccc
Confidence            999999999877653221  1   2348999999999999999999999887643  45677777777643321111123


Q ss_pred             EeeCCEEEEEEEEeecCCCe-eEEEECCee--------------------------------cCC-CCceEEEee--cce
Q psy8139         560 FEMGEIIKLKVSMAGMPPPT-ARWLHNGEP--------------------------------LTS-GGRYEITHT--DRY  603 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~--------------------------------l~~-~~~~~~~~~--~~~  603 (1101)
                      +..|+.+.|.|.+.+.|.|. +.|++++..                                +.. ...+.+...  ...
T Consensus       435 ~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~  514 (772)
T 3v2a_R          435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV  514 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEE
Confidence            67899999999999999997 999986321                                100 001111111  112


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEP  665 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p  665 (1101)
                      ..|.|.++  .|.|.|+|.|.|..|.......+.|..+|.....+......+..+.|.|...
T Consensus       515 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~  574 (772)
T 3v2a_R          515 STLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTAD  574 (772)
T ss_dssp             --------------------------------------------------------------
T ss_pred             EEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEecc
Confidence            46667666  6899999999999998888888888876644333333445677888888853

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.83  E-value=1.5e-19  Score=207.60  Aligned_cols=294  Identities=20%  Similarity=0.242  Sum_probs=202.4

Q ss_pred             cceEEEcCccC-CccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         405 DTELMVSGLEP-GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       405 ~~~l~i~~L~p-~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      +++|.|.++.. .|+|.|+|.|.|..|....    ..+.+.+...+   +.....+....+.+|+++.|.|.+ .+.|.+
T Consensus        60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s----~~~~l~v~~~~---~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~  132 (382)
T 1cs6_A           60 AGDLVISNPVKAKDAGSYQCVATNARGTVVS----REASLRFGFLQ---EFSAEERDPVKITEGWGVMFTCSPPPHYPAL  132 (382)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTEEEEC----CCEEEEEEEEC---CCCSSCCCCEEEETTSCEEECCCCCSEESCC
T ss_pred             CCeEEEecccccccCEEEEEEEEcCCcEEEe----cceEEEeeccc---cccccCCCceEEecCCcEEEEeCCCCCCCCc
Confidence            46799999986 9999999999998875421    22333332111   111123456788999999999985 567889


Q ss_pred             eEEEEECCEEee--cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE-----EEEeecc------CCccc
Q psy8139         483 KVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-----ARLRLEA------PPTIR  549 (1101)
Q Consensus       483 ~v~W~~~g~~~~--~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s-----~~l~V~~------~p~~~  549 (1101)
                      .+.|++++..+.  ...+....  .....|.|.++...|+|.|+|.+.|..|.....     ..|.|..      +|.+.
T Consensus       133 ~i~W~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~  210 (382)
T 1cs6_A          133 SYRWLLNEFPNFIPADGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK  210 (382)
T ss_dssp             EEEEEESSTTCBCCCCSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEE
T ss_pred             EEEEEECCCccccccCceEEEe--cCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCcee
Confidence            999999886543  22333222  223489999999999999999999987643322     3444322      33332


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..  .+....+..|+.+.|.|.+.+.|.+.+.|++++..+...      .......|.|.++...|.|.|+|.|.|..|.
T Consensus       211 ~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  282 (382)
T 1cs6_A          211 AK--FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGR  282 (382)
T ss_dssp             EC--CCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cc--CCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCe
Confidence            21  123457888999999999999999999999988765431      1223668999999999999999999999999


Q ss_pred             ceeEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEE
Q psy8139         630 DVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTI  706 (1101)
Q Consensus       630 ~~~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l  706 (1101)
                      ......+.|..+|.   .|..  .....+..+.|.|...+.                                  ....+
T Consensus       283 ~~~~~~l~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~----------------------------------p~p~v  326 (382)
T 1cs6_A          283 DTYQGRIIIHAQPDWLDVITD--TEADIGSDLRWSCVASGK----------------------------------PRPAV  326 (382)
T ss_dssp             EEEEEEEEEEEEEEEEECCCC--EEEETTCCEEEECEEEEE----------------------------------SCCEE
T ss_pred             EEEEEEEEEecCCCcccCCCc--cEEcCCCeEEEEEEeeee----------------------------------cCCEE
Confidence            88888888886653   2222  234567789999985321                                  11246


Q ss_pred             EeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         707 RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       707 ~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      .|...    |.++.         .. ....     .....++|.++.+...+.|.|.|.|..|.
T Consensus       327 ~W~~~----g~~~~---------~~-~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  371 (382)
T 1cs6_A          327 RWLRD----GQPLA---------SQ-NRIE-----VSGGELRFSKLVLEDSGMYQCVAENKHGT  371 (382)
T ss_dssp             EEEET----TEECC---------CC-SSEE-----EETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEEC----CEECC---------CC-ceEE-----EECCEEEECcCCcccCEEEEEEEEeCCCe
Confidence            77642    11110         00 0011     12347899999999999999999999997

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.82  E-value=2.3e-20  Score=235.88  Aligned_cols=338  Identities=15%  Similarity=0.123  Sum_probs=107.8

Q ss_pred             hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCC------CcccCCCCCCCC--CeeEEEEeCCCCC
Q psy8139         304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGK------PQLLPDSPSLDR--DVFTIRWEPPEYD  375 (1101)
Q Consensus       304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~------p~~l~~~~~~~~--~sv~l~W~~p~~~  375 (1101)
                      +.+.|.|.++...|+|.|.|.+.   ....+..+.+.+.. |.+|..      +..+.   ....  ..++|.|....  
T Consensus        84 ~~~~l~I~~~~~~d~G~Y~C~~~---~~~~~~~~~v~v~~-~~~~~~~~~~~~~~~~~---v~~G~~~~v~L~C~~~~--  154 (772)
T 3v2a_R           84 FCKTLTIPKVIGNDTGAYKCFYR---ETDLASVIYVYVQD-YRSPFIASVSDQHGVVY---ITENKNKTVVIPCLGSI--  154 (772)
T ss_dssp             ----------------------------------------------------CEEEEE---EESSCCCEEEECCCCSC--
T ss_pred             EEEEEEECCCcHhhCEeEEEEEc---CCCEEEEEEEEECC-CCCCceEcCcccceeEE---EecCCCCeEEEEccCCC--
Confidence            46789999999999999999885   22223334444432 222211      11111   1123  66888887652  


Q ss_pred             CCcCeeEEEEEEEecCCCceEEcC--ccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCC
Q psy8139         376 GGSPVLGYLVEHRRTGSPYWVRAS--PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  453 (1101)
Q Consensus       376 g~~~i~~Y~v~~~~~~~~~w~~~~--~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P  453 (1101)
                      ..   ..+.+... ..+..+....  ........|.|.++++.|.|.|+|.+.+..+. ..   +....+.+..  ..+|
T Consensus       155 p~---~~v~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~---s~~~~~~v~~--~~~~  224 (772)
T 3v2a_R          155 SN---LNVSLCAR-YPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES-YQ---SIMYIVVVVG--YRIY  224 (772)
T ss_dssp             SS---CCEEEEEE-TTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEE-EE---CCEEEEEEEC--CCEE
T ss_pred             CC---cEEEEEec-CCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCce-EE---EEEEEEEEec--Cccc
Confidence            11   12222211 0011111111  01123467999999999999999999975432 11   2223333321  2233


Q ss_pred             eeeecC-ceeEEccCCeEEEEEEEec--cCCCeEEEEECCEEeecCCcEEE--------EecCCeeEEEEeecCCCCCEE
Q psy8139         454 SFIRAL-HDTTALEDEKVEFTVQVEG--IPTPKVSWYKDGFEIFSSRRQRI--------VTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       454 ~~~~~p-~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g~~~~~~~~~~~--------~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      .+...| ....+..|++++|.|.+.+  .|.+.+.|++++..+........        ........|.|.++...|+|.
T Consensus       225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  304 (772)
T 3v2a_R          225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  304 (772)
T ss_dssp             EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred             eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence            444444 4478999999999999987  45668999999876544322211        011234589999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecc
Q psy8139         523 IKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR  602 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~  602 (1101)
                      |+|.+.|..|.......|.|..+|.+...+.......+..|+.+.|.|.+.+.|.+.+.|+++|..+.....+  .   .
T Consensus       305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~--~---~  379 (772)
T 3v2a_R          305 YTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--K---A  379 (772)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred             EEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE--c---c
Confidence            9999999999888888999998887655443334556788999999999999999999999999887653222  1   3


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCce--eEEEEEEecCCCCCCc----cEEEEecCCeEEEEeecC
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDV--ASFLVTVTDRPLPPGK----AKVVMTLGKSVTLSWSEP  665 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~--~s~~l~v~~~P~~P~~----~~~~~~~~~sv~lsW~~p  665 (1101)
                      ...|.|.++...|.|.|+|.|.|..|...  ....+.|..+|..+..    +......+..++|.|...
T Consensus       380 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~  448 (772)
T 3v2a_R          380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVY  448 (772)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEec
Confidence            57899999999999999999999988754  3455666655543211    111234567788888853

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.82  E-value=8.3e-20  Score=214.90  Aligned_cols=293  Identities=15%  Similarity=0.073  Sum_probs=180.5

Q ss_pred             hhhhhhhcccccCcceEEEeeeccccccc-------ccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCC
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNV-------GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG  377 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~-------s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~  377 (1101)
                      .+.|.|.++...|.|.|.|.|.|..|...       +....+.+...|  +..|.............++|.|....   .
T Consensus       141 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~--~~~p~~~~~~~v~~G~~v~l~C~~~g---~  215 (450)
T 1z7z_I          141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP--ATPPQLVSPRVLEVDTQGTVVCSLDG---L  215 (450)
T ss_dssp             EEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC--SSCCEEECCSEEETTSEEEEEEEEES---C
T ss_pred             ceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC--CCCCEecCceeEEeCCcEEEEEEeeC---C
Confidence            45799999999999999999998877432       133444444332  22222210001233566777776641   1


Q ss_pred             cCeeEEEEEEEecCCCceEEcCccccccceEEE---cCccCCccE--EEEEEEEecCCCCCCCCCCcceEEEeccCCCCC
Q psy8139         378 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV---SGLEPGWRY--QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA  452 (1101)
Q Consensus       378 ~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i---~~L~p~d~y--~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~  452 (1101)
                      .+.....+.|...+...-...  . .....+.+   .++++.|.|  .|+|.|.|..|....     ...+.+...  .+
T Consensus       216 ~P~~~~~~~W~~~~~~~~~~~--~-~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~-----~~~l~V~~~--~~  285 (450)
T 1z7z_I          216 FPVSEAQVHLALGDQRLNPTV--T-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-----LQTVTIYSF--PA  285 (450)
T ss_dssp             TTGGGCEEEEEETTEECCCEE--E-EETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEE-----EEEEEEECC--CC
T ss_pred             CCCCceEEEEeCCCEeCCceE--E-ecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEE-----EEEEEEecC--CC
Confidence            021011222221110000000  0 00111222   177899988  999999998876432     234444322  23


Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.+..  .+..+.+|+.++|.|.+.  |.|.++|  +|..+..        .+....|.|.++...|+|.|+|.|.|..+
T Consensus       286 p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  351 (450)
T 1z7z_I          286 PNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPEDNGRSFSCSATLEVA  351 (450)
T ss_dssp             CEEEE--SCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEET
T ss_pred             CeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcccCCceEEEEEEcCCC
Confidence            66543  345889999999999998  8889999  6666521        12233799999999999999999997655


Q ss_pred             -ce---EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         533 -HS---ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       533 -~~---~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                       ..   ..+..|.|..+|.+...+. +....+..|+.+.|.|.+.|.|.|.+.|+++|..+...+.          .+  
T Consensus       352 g~~~~~~~~~~l~V~~~P~~~~~~~-p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~----------~~--  418 (450)
T 1z7z_I          352 GQLIHKNQTRELRVLYGPRLDERDC-PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------SV--  418 (450)
T ss_dssp             TEEEEEEEEEECEEEEEEECCSTTS-CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS----------CE--
T ss_pred             CcccccceeEEEEEecCCceeeccC-CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC----------eE--
Confidence             33   3567888888887765432 2345788999999999999999999999999874332211          11  


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139         609 SDARRADRGEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                       .+...|.|.|+|.|.|..|.....+.|.|..
T Consensus       419 -~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          419 -TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             -ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             -eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence             4778899999999999999999998888864

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.82  E-value=6.7e-19  Score=193.60  Aligned_cols=224  Identities=15%  Similarity=0.149  Sum_probs=167.3

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCe-eeecCceeEEccCCeEEEEEEEeccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS-FIRALHDTTALEDEKVEFTVQVEGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~-~~~~p~~~~v~~g~~v~L~C~~~g~p~~  482 (1101)
                      ....|.|.+++..|.|.|+|.|.|..|..     +..+.+.+..    +|. +...+....+..|+++.|.|.+.+.|.+
T Consensus        49 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~V~~----~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~  119 (289)
T 3ejj_X           49 PGSTLTTRNATFKNTGTYRCTELEDPMAG-----STTIHLYVKD----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALK  119 (289)
T ss_dssp             SCCEEEESSCCGGGCEEEEEECCC----------CEEEEEEECC----SSCSEEESCSEEEEETTSCEEECEEESCGGGG
T ss_pred             CccEEEEeeeccccCEEEEEEEeccCCcc-----eeEEEEEEeC----CCcceecccceEEEecCCceEeEEEccCCCcc
Confidence            44789999999999999999999877753     2345555542    222 5667788889999999999999988777


Q ss_pred             e-EEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe-CCCceEEEEEEeec----cCCccccCCCCC
Q psy8139         483 K-VSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN-RAGHSITKARLRLE----APPTIRLPKQYE  555 (1101)
Q Consensus       483 ~-v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n-~~g~~~~s~~l~V~----~~p~~~~~~~~~  555 (1101)
                      . +.|++ ++..+.....+.+...+   .|.|.++...|+|.|+|.|.| ..+.......|.|.    .+|.+...+.  
T Consensus       120 ~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~--  194 (289)
T 3ejj_X          120 DSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS--  194 (289)
T ss_dssp             GSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESS--
T ss_pred             eEEEEEecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCC--
Confidence            5 99986 66777666666554333   799999999999999999994 44444556778887    4666654443  


Q ss_pred             CCeEEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEE--eecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         556 DGLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEIT--HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                       ...+..|..+.|.|.+.+ .|.+.+.|++++..+.........  .......|.|.++...|.|.|+|.|.|..|....
T Consensus       195 -~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  273 (289)
T 3ejj_X          195 -KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTA  273 (289)
T ss_dssp             -SEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred             -ceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccc
Confidence             335568999999999998 789999999999888654322211  1112578999999999999999999999999998


Q ss_pred             EEEEEEecCC
Q psy8139         633 SFLVTVTDRP  642 (1101)
Q Consensus       633 s~~l~v~~~P  642 (1101)
                      ++.|.+...+
T Consensus       274 s~~L~~~~~~  283 (289)
T 3ejj_X          274 TMNFQVVESH  283 (289)
T ss_dssp             EEEEECC---
T ss_pred             cEEEEEEecc
Confidence            8888876543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=204.92  Aligned_cols=225  Identities=18%  Similarity=0.186  Sum_probs=164.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      .+.+|.|.++++.|+|.|+|.|.|..+...    +..+.+.+...  .++.+...+.......|..+.|.|.+ .|.|.+
T Consensus        72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~----~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~  145 (308)
T 4fom_A           72 NDATITLHNIGFSDSGKYICKAVTFPLGNA----QSSTTVTVLVE--PTVSLIKGPDSLIDGGNETVAAICIAATGKPVA  145 (308)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEETTTEEE----EEEEEEEEEBC--CEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCC
T ss_pred             CceEEEEccCCHHHCEEEEEEEeeCCCcce----eeeeEEEeeec--cccccccccceeEEcCCceEEEEEEecCCcCCc
Confidence            446799999999999999999998643221    12233333321  22223445566666788999999975 689999


Q ss_pred             eEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEE--EEEEeeccCCccccCCCCCCC
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDG  557 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~--s~~l~V~~~p~~~~~~~~~~~  557 (1101)
                      .++|++++..+.....  ....+   ..+.|.|.++...|.|.|+|.|.|..|....  +..|.|..+|.+...+.  ..
T Consensus       146 ~i~W~~~~~~~~~~~~--~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~--~~  221 (308)
T 4fom_A          146 HIDWEGDLGEMESTTT--SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGY--DG  221 (308)
T ss_dssp             EEEECCCSSBCCEEEE--ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCC--CS
T ss_pred             eEEEEECCcccccccc--eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEccc--ce
Confidence            9999998876543211  00011   1237999999999999999999998776544  45677777777654332  23


Q ss_pred             eEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+..|+.+.|.|.+.|.|.| .+.|++++..+..+..     ..+...+.|.+++..|.|.|+|.|.|..|..+.+..|
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l  296 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVI  296 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEE
Confidence            366778899999999999988 6999999887764321     1234567788999999999999999999999999999


Q ss_pred             EEecCCC
Q psy8139         637 TVTDRPL  643 (1101)
Q Consensus       637 ~v~~~P~  643 (1101)
                      .|..+|.
T Consensus       297 ~V~~~P~  303 (308)
T 4fom_A          297 YISDPPH  303 (308)
T ss_dssp             CEECCC-
T ss_pred             EEEcCCC
Confidence            9998774

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.82  E-value=3.2e-18  Score=188.32  Aligned_cols=264  Identities=19%  Similarity=0.241  Sum_probs=174.7

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-CceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      .+|++|..+.+. .++.+++.|+|.+|  +  ..+.+|.|+++..+. ..|.... ......++.|.+|.|++.|.|+|.
T Consensus        19 ~~p~~P~~l~~~-~~~~~sv~l~W~~p--~--~~~~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~   92 (290)
T 3r8q_A           19 PAIPAPTDLKFT-QVTPTSLSAQWTPP--N--VQLTGYRVRVTPKEKTGPMKEIN-LAPDSSSVVVSGLMVATKYEVSVY   92 (290)
T ss_dssp             -CCCCCEEEEEE-EECSSCEEEEEECC--S--SCCCEEEEEEEESSSSSCCEEEE-ECTTCCEEEECSCCSSCEEEEEEE
T ss_pred             CCCCCCCceEEE-ECCCCEEEEEEeCC--C--CCeeEEEEEEEeCCCCCceEEEE-cCCCccEEEeCCCCCCCEEEEEEE
Confidence            345555555544 78899999999998  2  378999999987653 3454432 223567899999999999999999


Q ss_pred             EEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec
Q psy8139         425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD  504 (1101)
Q Consensus       425 A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  504 (1101)
                      |.|..|.+.++.    ..+..... +.      .|.+          |.+...+.....+.|...+.             
T Consensus        93 a~~~~g~s~~s~----~~~~t~~~-~~------~P~~----------l~~~~~~~~sv~l~W~~p~~-------------  138 (290)
T 3r8q_A           93 ALKDTLTSRPAQ----GVVTTLEN-VS------PPRR----------ARVTDATETTITISWRTKTE-------------  138 (290)
T ss_dssp             EEETTEECCCEE----EEEECCCC-CC------CCEE----------EEEEEECSSCEEEEEECCSC-------------
T ss_pred             EEeCCCCCCCcc----eeEecCCC-CC------CCce----------eEEEEcCCCeEEEEEeCCCC-------------
Confidence            999988876541    22221111 11      1222          22333333344566743210             


Q ss_pred             CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEE
Q psy8139         505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH  584 (1101)
Q Consensus       505 ~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~  584 (1101)
                                  .-+.  |.+......+.                                                   
T Consensus       139 ------------~~~~--Y~v~~~~~~~~---------------------------------------------------  153 (290)
T 3r8q_A          139 ------------TITG--FQVDAVPANGQ---------------------------------------------------  153 (290)
T ss_dssp             ------------CCCE--EEEEEEESSSC---------------------------------------------------
T ss_pred             ------------cccE--EEEEEEECCCC---------------------------------------------------
Confidence                        0011  22111110000                                                   


Q ss_pred             CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeec
Q psy8139         585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       585 ~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~  664 (1101)
                              ............++.|.+|.++..|.|++.|.|..|.+.. ..+.....|.+|.++.+...+.+++.|+|.+
T Consensus       154 --------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~-~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~  224 (290)
T 3r8q_A          154 --------TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP-VVIDASTAIDAPSNLRFLATTPNSLLVSWQP  224 (290)
T ss_dssp             --------CCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCC-EEEEEECCCCCCEEEEEEEEETTEEEEEEEC
T ss_pred             --------cceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCC-EEEEecCCCCCCCccEEEeeCCCEEEEEEeC
Confidence                    0001111122456889999999999999999999887654 3455667789999998888888888888886


Q ss_pred             CCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCc
Q psy8139         665 PEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED  744 (1101)
Q Consensus       665 p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~  744 (1101)
                      |.                                                  +.+.+|.|.|+..++..|..........
T Consensus       225 p~--------------------------------------------------~~~~~Y~v~~~~~~~~~~~~~~~~~~~~  254 (290)
T 3r8q_A          225 PR--------------------------------------------------ARITGYIIKYEKPGSPPREVVPRPRPGV  254 (290)
T ss_dssp             CS--------------------------------------------------SCCCEEEEEEECTTSCCEECSSCCCTTC
T ss_pred             CC--------------------------------------------------CcccEEEEEEEeCCCCcceeEeccCCCc
Confidence            53                                                  1467888888877766665443444677


Q ss_pred             cEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         745 TELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       745 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ++++|.+|.|++.|.|+|.|.|..|.|++
T Consensus       255 ~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          255 TEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             CEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            89999999999999999999999999765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.82  E-value=1.7e-19  Score=201.21  Aligned_cols=264  Identities=16%  Similarity=0.192  Sum_probs=180.9

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      .+....|.|.....+....+.|.....  ..++.       ......      .......|.|.+++..|+|.|+|.|.|
T Consensus        19 ~G~~v~L~C~~~~~~~~~~v~W~k~~~--~~~~~-------~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (315)
T 1itb_B           19 ANEIDVRPCPLNPNEHKGTITWYKDDS--KTPVS-------TEQASR------IHQHKEKLWFVPAKVEDSGHYYCVVRN   83 (315)
T ss_dssp             TTSCCCCBCCCCSCCCSSCCCEECTTS--CSCSC-------CCTTSS------SEECSSBEECTTCCGGGCSCCEECCCS
T ss_pred             CCCcEEEEeeccCcCCCceEEEEeCCC--cCccc-------cccCCc------EeccCCeEEECCCChhhCEEEEEEEeC
Confidence            355667777633333356888987521  10110       000111      112235899999999999999999999


Q ss_pred             cCCCCCCCCCCcceEEEeccCCCCCCeeeec---CceeEEccCCeEEEEEEE------eccCCCeEEEEECCEEeecCCc
Q psy8139         428 VVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA---LHDTTALEDEKVEFTVQV------EGIPTPKVSWYKDGFEIFSSRR  498 (1101)
Q Consensus       428 ~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~---p~~~~v~~g~~v~L~C~~------~g~p~~~v~W~~~g~~~~~~~~  498 (1101)
                      ..|....     .+.+.+.   ..+|.+...   +....+..|+++.|.|.+      .|.|.+.++|++++..+.....
T Consensus        84 ~~g~~~~-----~~~v~v~---~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~  155 (315)
T 1itb_B           84 SSYCLRI-----KISAKFV---ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI  155 (315)
T ss_dssp             SSCCCCE-----ECCCEEE---CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred             CceEEEE-----EEEEEEe---CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence            8765431     1222222   133333222   234568899999999998      8999999999999998865332


Q ss_pred             EEEEecCCeeEEEEeecCCCCCEEEEEEEE-eCCCceEE---EEEEeec-----cCCccccCCCCCCCeEEeeCCEEEEE
Q psy8139         499 QRIVTDNDISTLIIHQAALMDEGEIKCTAT-NRAGHSIT---KARLRLE-----APPTIRLPKQYEDGLLFEMGEIIKLK  569 (1101)
Q Consensus       499 ~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~-n~~g~~~~---s~~l~V~-----~~p~~~~~~~~~~~~~v~~g~~~~l~  569 (1101)
                      ... ..++  .|.|.++...|+|.|+|.|. |..|....   ...+.+.     .+|.+..++.  ....+..|+.+.|.
T Consensus       156 ~~~-~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~~~~g~~v~l~  230 (315)
T 1itb_B          156 HFS-GVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN--ETMEVDLGSQIQLI  230 (315)
T ss_dssp             SEE-EETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCS--EEEECCSSSCEEEE
T ss_pred             eEe-ecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCC--CcEEEeCCCcEEEE
Confidence            222 2233  89999999999999999999 78887633   3334333     4555544332  12467789999999


Q ss_pred             EEEeecCCCeeEEEECCeecCCCCceEE-----Eee-------cceEEEEEccCCCCC-CeEEEEEEEeCCCCceeEEEE
Q psy8139         570 VSMAGMPPPTARWLHNGEPLTSGGRYEI-----THT-------DRYLNLRISDARRAD-RGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       570 c~~~g~p~~~v~W~~~g~~l~~~~~~~~-----~~~-------~~~~sl~i~~l~~~~-~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      |.+.|.|.|.+.|+++|..+........     ...       ...+.|.|.++...| .|.|+|.|.|..|....++.|
T Consensus       231 C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l  310 (315)
T 1itb_B          231 CNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL  310 (315)
T ss_dssp             EEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEE
T ss_pred             EEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEE
Confidence            9999999999999999999876442111     111       124589999999999 999999999999999888887


Q ss_pred             EEe
Q psy8139         637 TVT  639 (1101)
Q Consensus       637 ~v~  639 (1101)
                      .|.
T Consensus       311 ~v~  313 (315)
T 1itb_B          311 IYP  313 (315)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.82  E-value=7.7e-19  Score=195.45  Aligned_cols=221  Identities=15%  Similarity=0.165  Sum_probs=165.2

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC--------CCCCeeeecC-ceeEEccCCeEEEEEEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP--------AAAPSFIRAL-HDTTALEDEKVEFTVQV  476 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~--------~~~P~~~~~p-~~~~v~~g~~v~L~C~~  476 (1101)
                      ..|.|.+++..|+|.|+|.|.|..|...      ...+.+....        ..+|.+...+ ....+..|+++.|.|.+
T Consensus        58 ~~L~I~~~~~~D~G~Y~C~~~n~~g~~~------s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~  131 (312)
T 2y23_A           58 TKMTFKDLGMDDLGIYSCDVTDTDGIAS------SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA  131 (312)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSSCCCCE------EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEE
T ss_pred             EEEEECcCCccCCEEEEEEEEeCCCcEE------EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEE
Confidence            5899999999999999999999887432      1333322100        0044444433 37889999999999999


Q ss_pred             e-ccCCCeEEEEECCEEeecCCcEEEEec--CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee-----------
Q psy8139         477 E-GIPTPKVSWYKDGFEIFSSRRQRIVTD--NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL-----------  542 (1101)
Q Consensus       477 ~-g~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V-----------  542 (1101)
                      . +.|.+.+.|++++..+....++.+...  ++...|.|.++...|+|.|+|.|.+..+.......+..           
T Consensus       132 ~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (312)
T 2y23_A          132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE  211 (312)
T ss_dssp             SCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHH
T ss_pred             EeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhccccc
Confidence            9 899999999999999988776666543  55567999999999999999999875544433333310           


Q ss_pred             --------ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCC
Q psy8139         543 --------EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR  613 (1101)
Q Consensus       543 --------~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~  613 (1101)
                              ..+|.+..+.    ...+..|+.+.|.|.+.+.|.+ .+.|+++|..+..+.++.+.  ++...|.|.++..
T Consensus       212 ~~~~~~~~~~~p~~~~~~----~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~  285 (312)
T 2y23_A          212 FQRQEWIRKQGPHFVEYL----SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSK  285 (312)
T ss_dssp             HHHHHHHHHHSSEEEEEE----EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSG
T ss_pred             ccccchhhccCCceeecc----eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCH
Confidence                    1123322111    1467889999999999999988 99999999988755555544  3467999999999


Q ss_pred             CCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         614 ADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.|.|+|.|.|..|....++.|.+
T Consensus       286 ~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          286 KDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             GGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             HHCEEEEEEEEcCCCceeeeeEEEe
Confidence            9999999999999999888877765

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.82  E-value=1.2e-19  Score=206.92  Aligned_cols=215  Identities=14%  Similarity=0.096  Sum_probs=163.9

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+         .+.+.+..       +...| ...+.+|++++|.|.+.+.|.+.+
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~---------~~~l~V~~-------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v  128 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQKE---------EVQLLVFG-------LTANS-DTHLLQGQSLTLTLESPPGSSPSV  128 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEEE---------EEEEEEEE-------EEESS-CSSEESBSCEEEEEECCTTCCCCE
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCC---------cEEEEEEe-------CCCCC-ceEEecCCCEEEEEEcCCCCCCeE
Confidence            45799999999999999999988743         13333321       12222 235789999999999999999999


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCC
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGE  564 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~  564 (1101)
                      .|++++..+.        ..  ...|.|.++...|+|.|+|.|.|..+.......|.|..+|..+      ....+..|+
T Consensus       129 ~W~~~~~~~~--------~~--~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~------~~~~~~~G~  192 (363)
T 1wio_A          129 QCRSPRGKNI--------QG--GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS------SIVYKKEGE  192 (363)
T ss_dssp             EEECSSSCEE--------EE--SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE------EEEEEETBC
T ss_pred             EEEcCCCccc--------cc--ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC------CceEEecCC
Confidence            9999875431        12  2389999999999999999999987766666677777655432      344677899


Q ss_pred             EEEEEEEEee-----cCCCeeEEEECCeecCC--------CCceEEEe----------ecceEEEEEccCCCCCCeEEEE
Q psy8139         565 IIKLKVSMAG-----MPPPTARWLHNGEPLTS--------GGRYEITH----------TDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       565 ~~~l~c~~~g-----~p~~~v~W~~~g~~l~~--------~~~~~~~~----------~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.|.|.+.+     .|.+.+.|+++|..+..        +..+.+..          .+...+|.|.++...|.|.|+|
T Consensus       193 ~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  272 (363)
T 1wio_A          193 QVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL  272 (363)
T ss_dssp             CEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEE
T ss_pred             EEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEE
Confidence            9999998887     77899999999988765        34444432          2224589999999999999999


Q ss_pred             EEEeC--CCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeec
Q psy8139         622 HGVNS--LGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       622 ~A~N~--~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~  664 (1101)
                      .|.|.  .|.......|.|...+            +..+.|+|..
T Consensus       273 ~a~n~~~~g~~~~~~~l~V~~v~------------g~~~~l~C~~  305 (363)
T 1wio_A          273 TLALEAKTGKLHQEVNLVVMRAT------------QLQKNLTCEV  305 (363)
T ss_dssp             EECBTTTTCCEEEEEEEEEEEEC------------CCSSSEEEEE
T ss_pred             EEEEhhhcCeEEEEEeEEEEEec------------CCCeeEEEEE
Confidence            99999  9988888888877333            4556777764

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.82  E-value=3.3e-20  Score=208.84  Aligned_cols=234  Identities=19%  Similarity=0.254  Sum_probs=144.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCC------------------CCCeeeec----Ccee
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA------------------AAPSFIRA----LHDT  462 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~------------------~~P~~~~~----p~~~  462 (1101)
                      ...|.|.+++..|.|.|+|.|.|. |...     ..+.+.+...+.                  .+|.+...    +...
T Consensus        60 ~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~  133 (334)
T 1ry7_B           60 PQRLQVLNASHEDSGAYSCRQRLT-QRVL-----CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLL  133 (334)
T ss_dssp             -----------------------------------------------------------------CCCCSCCTTCCCCEE
T ss_pred             cceEEEeecccccCEEEEEEEEeC-CeEE-----EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeE
Confidence            468999999999999999999998 4322     223343332211                  24444322    2346


Q ss_pred             EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      .+..|+++.|.|.+.|.|.+.+.|++++..+...... ......+...|.|.++...|+|.|+|.|.|..|.......|.
T Consensus       134 ~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  213 (334)
T 1ry7_B          134 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD  213 (334)
T ss_dssp             EEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEE
Confidence            7889999999999999999999999999877654322 111223345899999999999999999999999888888888


Q ss_pred             eccCCcc--ccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEE----CCeecCCCCc--eEEEe-------ecceEEE
Q psy8139         542 LEAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH----NGEPLTSGGR--YEITH-------TDRYLNL  606 (1101)
Q Consensus       542 V~~~p~~--~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~----~g~~l~~~~~--~~~~~-------~~~~~sl  606 (1101)
                      |...+..  ......+....+..|+.+.|.|.+.|.|.+.+.|++    +|..+..+..  +.+..       ......|
T Consensus       214 V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  293 (334)
T 1ry7_B          214 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL  293 (334)
T ss_dssp             EECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCE
T ss_pred             EecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEE
Confidence            8763221  111112245678899999999999999999999999    6766654322  11111       1123479


Q ss_pred             EEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCC
Q psy8139         607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP  644 (1101)
Q Consensus       607 ~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~  644 (1101)
                      .|.++...|.|.|+|.|.|..|....+..|.|...|.+
T Consensus       294 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            99999999999999999999999999999999876654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.82  E-value=4.8e-19  Score=198.80  Aligned_cols=222  Identities=14%  Similarity=0.162  Sum_probs=163.3

Q ss_pred             cceEEEcCccCCccE-EEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC-CC
Q psy8139         405 DTELMVSGLEPGWRY-QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP-TP  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y-~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~  482 (1101)
                      ..+|.|.++++.|+| .|+|.|.|..|.....     ....+.   ..+|.+...+....+..|+++.|.|.+.|.| .+
T Consensus        88 ~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~-----~~~~v~---~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~  159 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG-----IVRSHI---RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN  159 (329)
T ss_dssp             TTEEEESSCCGGGGGCCEEEEEECTTSCEEEE-----EEEEEE---CCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCC
T ss_pred             cceEEEcCCChHhCCCcEEEEEEeCCCceeeE-----EEEEEE---cCCCcEeccccceEEeCCCcEEEEeccCCCCCCc
Confidence            578999999999999 9999999988753221     111222   2334444444444567799999999999999 89


Q ss_pred             eEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC--CCceEEE----EEEeeccCCccccCCCCC
Q psy8139         483 KVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR--AGHSITK----ARLRLEAPPTIRLPKQYE  555 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~--~g~~~~s----~~l~V~~~p~~~~~~~~~  555 (1101)
                      .+.|++++..+... .++...  +  ..|.|.++...|+|.|+|.|.|.  .|.....    +.|.|..+|....+...+
T Consensus       160 ~i~W~k~~~~l~~~~~~~~~~--~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~  235 (329)
T 3oq3_B          160 NITWYKNNQELIIDGTKYSQS--G--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILD  235 (329)
T ss_dssp             EEEEEETTEECCCSSSSEEEE--T--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECC
T ss_pred             eEEEEECCccCCCCCceEecC--C--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecC
Confidence            99999999988533 333333  2  38999999999999999999997  6554433    678887766321111112


Q ss_pred             CCeEEeeCCEEEEEEEEeecC---CC-eeEEEECCeec-CCCCceEEE--eec--ceEEEEEccCCCCCCe-EEEEEEEe
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMP---PP-TARWLHNGEPL-TSGGRYEIT--HTD--RYLNLRISDARRADRG-EYQAHGVN  625 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p---~~-~v~W~~~g~~l-~~~~~~~~~--~~~--~~~sl~i~~l~~~~~y-~y~c~A~N  625 (1101)
                      ....+..|+.+.|.|.+.+.|   .+ .+.|+++|..+ ..+......  ..+  ....|.|.++...|.| .|+|.|.|
T Consensus       236 ~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N  315 (329)
T 3oq3_B          236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN  315 (329)
T ss_dssp             SEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEEC
T ss_pred             CeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEe
Confidence            345788899999999999998   67 88999998874 333322211  111  3678999999999999 99999999


Q ss_pred             CCCCceeEEEEEE
Q psy8139         626 SLGEDVASFLVTV  638 (1101)
Q Consensus       626 ~~G~~~~s~~l~v  638 (1101)
                      ..|....+..|.|
T Consensus       316 ~~G~~~~~~~l~v  328 (329)
T 3oq3_B          316 YYFDKTLTTTVVL  328 (329)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             cCCceEEEEEEEe
Confidence            9999888777765

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.82  E-value=4.9e-19  Score=196.37  Aligned_cols=210  Identities=23%  Similarity=0.366  Sum_probs=152.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE--ecCCeeEEEEeecCC-CCCEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV--TDNDISTLIIHQAAL-MDEGEIKCT  526 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~~~l~I~~l~~-~d~g~Y~C~  526 (1101)
                      ..+|.|...|.+..+.+|++++|.|.+.|.|.+.+.|+++|..+... ++...  ..+....|.|.++.. .|+|.|+|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            46889999999999999999999999999999999999999887544 33333  233347899999997 999999999


Q ss_pred             EEeCCCceEEEEEEeeccC-------CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc-eEEE
Q psy8139         527 ATNRAGHSITKARLRLEAP-------PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEIT  598 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V~~~-------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~-~~~~  598 (1101)
                      |.|..|.....+.|.|..+       |.+...+   ....+..|..+.|.|.+.|.|.+.+.|++++..+..... ..+.
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~---~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~  159 (304)
T 2yd9_A           83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP---QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK  159 (304)
T ss_dssp             EECSSCEECCEEEEEEECGGGCCTTCCEEEECC---CCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEE
T ss_pred             EECCCCeEEEEEEEEEeccccCCCCCCeeecCC---ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEE
Confidence            9999998877888888765       3333322   345778899999999999999999999999988864321 1111


Q ss_pred             eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE-EEEEEecCCCCCCcc----EEEEecCCeEEEEeec
Q psy8139         599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTVTDRPLPPGKA----KVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       599 ~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s-~~l~v~~~P~~P~~~----~~~~~~~~sv~lsW~~  664 (1101)
                      . ...+.|.|.++...|.|.|+|.|.|..|..... ..+.|...+.+|.-.    ......+..+.|.|..
T Consensus       160 ~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~  229 (304)
T 2yd9_A          160 Q-LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA  229 (304)
T ss_dssp             E-CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEE
T ss_pred             e-CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEE
Confidence            1 224589999999999999999999999876543 555554332222100    0123456678888875

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.82  E-value=1e-18  Score=194.60  Aligned_cols=223  Identities=15%  Similarity=0.159  Sum_probs=165.4

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      .+.+|.|.+++..|+|.|+|.+.+..+...    +..+.+.+    ..+|.+...+....+..+..+.+.|.+ .+.|.+
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~----~~~~~l~v----~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~  148 (313)
T 4fqp_A           77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSR----SVDIWLRV----LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPA  148 (313)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEECSSSCEE----EEEEEECC----BBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCC
T ss_pred             cceEEEECcCChhhCEEEEEEEeeccCcce----eeeeeeee----ccCCcceecccceEeecCceEEEEEEccCccCCc
Confidence            346799999999999999999875433221    12233332    356666666667777888899999976 478999


Q ss_pred             eEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCceEE--EEEEeeccCCccccCCCCCCC
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDG  557 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~--s~~l~V~~~p~~~~~~~~~~~  557 (1101)
                      .+.|++++..+...........+.   .+.|.|......|.|.|+|.|.|..+....  +..|.|..+|.+...+.  ..
T Consensus       149 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~--~~  226 (313)
T 4fqp_A          149 QITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY--DN  226 (313)
T ss_dssp             EEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECC--CS
T ss_pred             EEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccc--cc
Confidence            999999987665432222211221   236888899999999999999998766544  45677777787644332  23


Q ss_pred             eEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+..|+.+.|.|.+.|.|.| .+.|+++|..+....  ..    ...+|.|.++...|.|.|+|.|.|..|..+.+..|
T Consensus       227 ~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~--~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  300 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA--VA----QGAQLLIRPVDKPINTTLICNVTNALGARQAELTV  300 (313)
T ss_dssp             CEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE----ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEE
T ss_pred             eeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce--EE----eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEE
Confidence            356678899999999999988 699999998886532  11    14579999999999999999999999999889999


Q ss_pred             EEecCC
Q psy8139         637 TVTDRP  642 (1101)
Q Consensus       637 ~v~~~P  642 (1101)
                      .|...|
T Consensus       301 ~V~~~P  306 (313)
T 4fqp_A          301 QVKEGP  306 (313)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.82  E-value=6.2e-19  Score=220.56  Aligned_cols=136  Identities=29%  Similarity=0.379  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          38 IRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLY  117 (1101)
Q Consensus        38 ~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~  117 (1101)
                      +..+|+.||++||||+    +|++|.+++.+++.||++|||+++|+.++..                +...||+.||++|
T Consensus       767 l~~aa~~IQa~~Rg~l----~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~l----------------r~~~AAi~IQs~~  826 (1080)
T 2dfs_A          767 LRAACIRIQKTIRGWL----MRKKYMRMRRAAITIQRYVRGHQARCYATFL----------------RRTRAAIIIQKFQ  826 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHhhccccc----------------ccchhHHHHHHHH
Confidence            3456666666666666    6666666666666666666666665544322                3455666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139         118 KAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRR  197 (1101)
Q Consensus       118 R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~  197 (1101)
                      |    ++..|+.|...+.+++.||++|||+++|+.++.  .+...||+.||++|||+++|+.    +.+.+.|++.||+.
T Consensus       827 R----g~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~--lr~~~aav~IQ~~~Rg~l~R~~----y~~~~~aai~iQs~  896 (1080)
T 2dfs_A          827 R----MYVVRKRYQCMRDATIALQALLRGYLVRNKYQM--MLREHKSIIIQKHVRGWLARVH----YHRTLKAIVYLQCC  896 (1080)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTHHHHH----TTTTHHHHHHHHHH
T ss_pred             h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHH
Confidence            6    345555666666666666666666666655443  2223466666666666666554    33345566666666


Q ss_pred             HHHHHH
Q psy8139         198 YRANVA  203 (1101)
Q Consensus       198 ~Rg~~~  203 (1101)
                      |||+++
T Consensus       897 ~R~~la  902 (1080)
T 2dfs_A          897 YRRMMA  902 (1080)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666665

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.9e-18  Score=180.76  Aligned_cols=176  Identities=25%  Similarity=0.435  Sum_probs=143.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      +.+..|+.+.|.|.+.|.|.+.+.|+++|..+...  .++.+...+....|.|.++...|.|.|+|.|.|..|.......
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  107 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI  107 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEE
Confidence            57888999999999999999999999999998765  4566666666889999999999999999999999999988999


Q ss_pred             EEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCC
Q psy8139         636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG  715 (1101)
Q Consensus       636 l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~  715 (1101)
                      +.+..+|.+|..+.+. ....++.|+|.+|.                                              .++
T Consensus       108 l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~----------------------------------------------~~~  140 (215)
T 3mtr_A          108 LVQADTPSSPSIDQVE-PYSSTAQVQFDEPE----------------------------------------------ATG  140 (215)
T ss_dssp             EEECCCCCCCEEEEEE-EETTEEEEEEECCS----------------------------------------------CCC
T ss_pred             EEECCCCCCCcceEEE-EecceEEEEEecCC----------------------------------------------ccC
Confidence            9999999999776653 45566677776554                                              344


Q ss_pred             CCCcceEEEEEEeCCCCCceeeccc---ccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         716 GSPVLGYLVEHRRTGSPYWVRASPH---MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       716 ~~~i~~Y~V~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      +.++.+|.|+|+..+...|......   ......++|.+|.|++.|.|+|.|.|.+|.|++|....+.
T Consensus       141 ~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          141 GVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             SSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             CCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            5678888888888887778764321   1223889999999999999999999999999888666544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.81  E-value=4.4e-19  Score=207.90  Aligned_cols=253  Identities=19%  Similarity=0.225  Sum_probs=168.4

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-cCCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~-  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|...    +....+.+. .+..+|.+...+....+..|+.+.|.|.+.| .|.+ 
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~----~~~~~l~V~-~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~  148 (438)
T 1qgc_4           74 DFTLTIDPVEADDVATYYCQQSNEVPLTF----GAGTKLDLK-RADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI  148 (438)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSTTCCB----CCCEEEEEC-CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCE
T ss_pred             cEEEEeCCCcCcCCeeEEEEEecCCCccc----cCceeEEec-CCCCCCEEEecCCChhhccCCceEEEEEEccccCCCc
Confidence            35799999999999999999999876321    223444443 2234677665444444557889999999987 6777 


Q ss_pred             eEEEEECCEEeecCCcE--EEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCC
Q psy8139         483 KVSWYKDGFEIFSSRRQ--RIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYE  555 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~--~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~  555 (1101)
                      .++|+++|..+......  ..... ++    .+.|.|.++...|+|.|+|.|.|..|.......+.+..++.....   +
T Consensus       149 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~---~  225 (438)
T 1qgc_4          149 NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVE---S  225 (438)
T ss_dssp             EEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEE---E
T ss_pred             EEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEec---C
Confidence            89999999987654111  11111 11    247999999999999999999999887544444433222221111   1


Q ss_pred             CCeEEeeCCEEEEEEEEeecC--CCeeEEEEC--CeecC-----------------CCCceEEEee--cceEEEEEccCC
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMP--PPTARWLHN--GEPLT-----------------SGGRYEITHT--DRYLNLRISDAR  612 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~sl~i~~l~  612 (1101)
                      ....+..|+.+.|.|.+.|.|  .+.+.|+++  +..+.                 ...++.+...  ....+|.|.++.
T Consensus       226 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  305 (438)
T 1qgc_4          226 GGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLR  305 (438)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCC
Confidence            244788999999999999988  689999986  43221                 1234554432  335689999999


Q ss_pred             CCCCeEEEEEEEeCCC-----CceeEEEEEEecCC-CCCCccEE----EEecCCeEEEEeecC
Q psy8139         613 RADRGEYQAHGVNSLG-----EDVASFLVTVTDRP-LPPGKAKV----VMTLGKSVTLSWSEP  665 (1101)
Q Consensus       613 ~~~~y~y~c~A~N~~G-----~~~~s~~l~v~~~P-~~P~~~~~----~~~~~~sv~lsW~~p  665 (1101)
                      ..|.|.|+|.|.|..|     .......+.|...+ .+|.-...    ....+.+++|.|...
T Consensus       306 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  368 (438)
T 1qgc_4          306 SADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVK  368 (438)
T ss_dssp             GGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEE
T ss_pred             hhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEec
Confidence            9999999999999554     22234567776432 23311111    123467899999853

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.81  E-value=3e-18  Score=178.81  Aligned_cols=189  Identities=26%  Similarity=0.403  Sum_probs=150.7

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEe-cCCeeEEEEeec-CCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDISTLIIHQA-ALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~l~I~~l-~~~d~g~Y~C~a~  528 (1101)
                      .+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.......... .+....|.|.++ ...|+|.|+|.|.
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~   84 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS   84 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence            57888888999999999999999999999999999999999887654333332 234568999999 5999999999999


Q ss_pred             eCCCceEEEEEEeeccC-------CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC---CceEEE
Q psy8139         529 NRAGHSITKARLRLEAP-------PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEIT  598 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~-------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~---~~~~~~  598 (1101)
                      |..|.....+.|.|..+       |.+...+   ....+..|..+.|.|.+.|.|.+.+.|+++|..+...   .++...
T Consensus        85 n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  161 (212)
T 2yd6_A           85 NNVGEISVSTRLTVLREDQIPRGFPTIDMGP---QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL  161 (212)
T ss_dssp             ETTEEEEEEEEEEEECGGGCCTTCCEEEECC---CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEE
T ss_pred             cCCCcEEEEEEEEEeccCccCCCcceeecCC---cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEE
Confidence            99998888888888764       3333222   2346778999999999999999999999999988753   455555


Q ss_pred             eecceEEEEEccCCCCCCeEEEEEEEeCCCCce-eEEEEEEecCC
Q psy8139         599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRP  642 (1101)
Q Consensus       599 ~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~-~s~~l~v~~~P  642 (1101)
                      ..+....|.|.++...|.|.|+|.|.|..|... ..+.+.+...|
T Consensus       162 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            555678999999999999999999999999764 45666666443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.81  E-value=4.6e-19  Score=200.84  Aligned_cols=226  Identities=15%  Similarity=0.170  Sum_probs=138.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-----ecc
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-----EGI  479 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-----~g~  479 (1101)
                      ...|.|.+++..|+|.|+|.|.|..|...     ..+.+.+...+...+.....|....+..|+++.|.|.+     .|.
T Consensus        78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~  152 (349)
T 4dep_C           78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSK-----VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSS  152 (349)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECSSCEEE-----EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTT
T ss_pred             CCEEEEccCChhhCEEEEEEEecCCceEE-----EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCC
Confidence            46899999999999999999999776543     22445554333322222344567788999999999985     788


Q ss_pred             CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC-Cce---EEEEEEeecc------CCccc
Q psy8139         480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA-GHS---ITKARLRLEA------PPTIR  549 (1101)
Q Consensus       480 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~-g~~---~~s~~l~V~~------~p~~~  549 (1101)
                      |.+.+.|++++..+.....+  ...+  ..|.|.++...|+|.|+|.|.|.. |..   .....|.|..      +|.+.
T Consensus       153 p~~~v~W~k~~~~l~~~~~~--~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~  228 (349)
T 4dep_C          153 VKPTITWYMGCYKIQNFNNV--IPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH  228 (349)
T ss_dssp             SCCEEEEEETTEECCSCSSE--EEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC
T ss_pred             CCceEEEeeCCEECCCccce--eecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEe
Confidence            99999999999988654333  2233  389999999999999999999987 443   3456677766      34443


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEEe----ecCCCeeEEEECCeecCC-CCceEEEe---------ecceEEEEEccCCCCC
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSMA----GMPPPTARWLHNGEPLTS-GGRYEITH---------TDRYLNLRISDARRAD  615 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~~----g~p~~~v~W~~~g~~l~~-~~~~~~~~---------~~~~~sl~i~~l~~~~  615 (1101)
                      .++. .....+..|+.+.|.|.+.    +.|.+.+.|+++|..+.. ..++.+..         .....+|.|.++...|
T Consensus       229 ~~~~-~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  307 (349)
T 4dep_C          229 SPND-HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSED  307 (349)
T ss_dssp             -----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC---------
T ss_pred             cCCC-ceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHH
Confidence            3221 1112577899999999999    568899999999988765 22222210         1114459999999999


Q ss_pred             C-eEEEEEEEeCCCCceeEEEEEEec
Q psy8139         616 R-GEYQAHGVNSLGEDVASFLVTVTD  640 (1101)
Q Consensus       616 ~-y~y~c~A~N~~G~~~~s~~l~v~~  640 (1101)
                      . |.|+|.|.|..|.......|.|..
T Consensus       308 ~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          308 LKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ----CEEEEECSSCEEEEECC-----
T ss_pred             cCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            9 999999999999988888888753

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.80  E-value=3.1e-18  Score=178.76  Aligned_cols=189  Identities=24%  Similarity=0.408  Sum_probs=153.2

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEee-cCCcEEEEe-cCCeeEEEEeecCC-CCCEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVT-DNDISTLIIHQAAL-MDEGEIKCT  526 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~-~~~~~~~~~-~~~~~~l~I~~l~~-~d~g~Y~C~  526 (1101)
                      ..||.|...|.+..+..|++++|.|.+.|.|.+.+.|++++..+. ...++.+.. .++...|.|.++.. .|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            368899999999999999999999999999999999999999887 445555544 35557999999999 999999999


Q ss_pred             EEeCCCc-eEEEEEEeeccC-------CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEE
Q psy8139         527 ATNRAGH-SITKARLRLEAP-------PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEI  597 (1101)
Q Consensus       527 a~n~~g~-~~~s~~l~V~~~-------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~  597 (1101)
                      +.|..|. ......|.|..+       |.+...+   ....+..|..+.|.|.+.|.|.+.+.|++++..+... ..+.+
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~  160 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGP---GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL  160 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECC---CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCC---CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc
Confidence            9999988 667788888765       3333332   3456778999999999999999999999999988753 33433


Q ss_pred             EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE-EEEEEecCCCCC
Q psy8139         598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTVTDRPLPP  645 (1101)
Q Consensus       598 ~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s-~~l~v~~~P~~P  645 (1101)
                      .    .+.|.|.++...|.|.|+|.|.|..|..... +.|.|...+..|
T Consensus       161 ~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~  205 (212)
T 2yd1_A          161 K----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT  205 (212)
T ss_dssp             E----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C-
T ss_pred             c----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccccc
Confidence            2    3489999999999999999999999988654 789998766544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.80  E-value=5.7e-18  Score=186.30  Aligned_cols=262  Identities=22%  Similarity=0.295  Sum_probs=192.0

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|.++.+..|+.++|.|.+.+.|. .+.|++ +|..+....++.+...+....|.|.++...|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            5678888899999999999999999999875 899999 77777777777777777778999999999999999999999


Q ss_pred             CCCceE-EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC--CCceEEEeecceEEE
Q psy8139         530 RAGHSI-TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNL  606 (1101)
Q Consensus       530 ~~g~~~-~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~sl  606 (1101)
                      ..|... ....|.|..+|.+...+   ....+..|+.+.|.|.+.+.|.+.+.|++++..+..  ..++.+..   ..+|
T Consensus        82 ~~g~~~~~~~~l~v~~~~~~~~~~---~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L  155 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQKLTFREVV---SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNL  155 (291)
T ss_dssp             SSSCEEEEEEEEEEECCCBCCSCC---CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT---TSCE
T ss_pred             ccCceEEEEEEEEecCCcceEeCC---CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc---CCCE
Confidence            988764 45678888777765443   345788999999999999999999999999887754  33333322   4579


Q ss_pred             EEccCCCCCCeEEEEEEEeCCCCce--eEEEEEEecCCCCCCcc---EEEEecCCeEEEEeecCCCCCCcccceeEEEEE
Q psy8139         607 RISDARRADRGEYQAHGVNSLGEDV--ASFLVTVTDRPLPPGKA---KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYF  681 (1101)
Q Consensus       607 ~i~~l~~~~~y~y~c~A~N~~G~~~--~s~~l~v~~~P~~P~~~---~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~  681 (1101)
                      .|.++...|.|.|+|.|.|..+...  ....+.+..+|......   ......+..+.|.|...+.+             
T Consensus       156 ~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p-------------  222 (291)
T 2wim_A          156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP-------------  222 (291)
T ss_dssp             EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBS-------------
T ss_pred             EEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCC-------------
Confidence            9999999999999999999886543  34556666665432211   22334577899999853211             


Q ss_pred             cCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139         682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       682 ~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                                           ...+.|....    .++.         .+.. ....   .....++|.++.......|.
T Consensus       223 ---------------------~p~v~W~~~g----~~~~---------~~~~-~~~~---~~~~~L~i~~~~~~d~G~Y~  264 (291)
T 2wim_A          223 ---------------------EPAISWFRNG----KLIE---------ENEK-YILK---GSNTELTVRNIINSDGGPYV  264 (291)
T ss_dssp             ---------------------CCEEEEEETT----EECC---------CTTT-EEEC---STTCEEEEESCCSTTCEEEE
T ss_pred             ---------------------CCeEEEEECC----EECc---------CCcc-EEEc---CCccEEEEeeCCcccCEEEE
Confidence                                 1246776421    1110         0001 1111   34467899999999999999


Q ss_pred             EEEEcCCcc
Q psy8139         762 ITAENVVGF  770 (1101)
Q Consensus       762 V~A~n~~G~  770 (1101)
                      |.|.|..|.
T Consensus       265 C~a~N~~G~  273 (291)
T 2wim_A          265 CRATNKAGE  273 (291)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEECCCc
Confidence            999999997

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.80  E-value=1.5e-18  Score=195.03  Aligned_cols=221  Identities=19%  Similarity=0.215  Sum_probs=163.8

Q ss_pred             ccceEEEcCccCCccEEEEEEEE-ecCCCCCCCCCCcceEEEeccCCCCCCee--eecCceeEEccC---CeEEEEEE-E
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAE-NVVGFSEPGPLSEPLTVTYQRSPAAAPSF--IRALHDTTALED---EKVEFTVQ-V  476 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~-n~~G~~~~s~~s~~vtv~~~~~~~~~P~~--~~~p~~~~v~~g---~~v~L~C~-~  476 (1101)
                      .+.+|.|.++++.|+|.|+|.+. +..|..     +..+.+.+.    .+|.+  ...+..+.+..|   +.+.|.|. +
T Consensus        90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~~l~V~----~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~  160 (331)
T 3u83_A           90 TDGTIRLSRLELEDEGVYICEFATFPTGNR-----ESQLNLTVM----AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSA  160 (331)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEE-----EEEEEEEEE----BCCEEEEEECSSCEEECTTCCCCEEEEEEEEE
T ss_pred             CCceEEEcccCcccCcEEEEEEEecCCCcc-----EEEEEEEEe----cCCcceeecCCCceeecCCCccceEEEEEEec
Confidence            45679999999999999999854 444432     233445444    34444  235667778888   78999997 8


Q ss_pred             eccCCCeEEEEEC--CEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCcccc
Q psy8139         477 EGIPTPKVSWYKD--GFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL  550 (1101)
Q Consensus       477 ~g~p~~~v~W~~~--g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~  550 (1101)
                      .+.|.+.+.|+++  +.....    .....++    .+.|.|.++...|+|.|+|.|.|..|....++.|.|..+|.+..
T Consensus       161 ~~~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~  236 (331)
T 3u83_A          161 NGKPPSVVSWETRLKGEAEYQ----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTI  236 (331)
T ss_dssp             EEBSCCEEEEEESSCCEEEEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEE
T ss_pred             CCcCCceEEEEcCCCCccccc----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEE
Confidence            8999999999995  322211    1111111    13688888899999999999999999888888999988887653


Q ss_pred             CCCCCCCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCCceEEEeecceEEEEEc-cCCCCCCeEEEEEEEeCCC
Q psy8139         551 PKQYEDGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGGRYEITHTDRYLNLRIS-DARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       551 ~~~~~~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~-~l~~~~~y~y~c~A~N~~G  628 (1101)
                      .+.  ....+..|+.+.|.|.+.+.|.+. +.|++++..+....  ..    ...+|.|. ++...|.|.|+|.|.|..|
T Consensus       237 ~~~--~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G  308 (331)
T 3u83_A          237 EGF--DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA----QNRTLFFKGPINYSLAGTYICEATNPIG  308 (331)
T ss_dssp             ECC--CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE----ETTEEEECSCCCGGGCEEEEEEEEETTE
T ss_pred             ecC--CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee----cCcEEEEeCCCccccCeEEEEEEEeccc
Confidence            322  223467799999999999999998 99999998876542  12    14579999 8999999999999999999


Q ss_pred             CceeEEEEEEecCCCCC
Q psy8139         629 EDVASFLVTVTDRPLPP  645 (1101)
Q Consensus       629 ~~~~s~~l~v~~~P~~P  645 (1101)
                      ....+..|.|...+...
T Consensus       309 ~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          309 TRSGQVEVNITEAAALE  325 (331)
T ss_dssp             EEEEEEEECCBC-----
T ss_pred             cceEEEEEEEeccchhh
Confidence            99889999888766543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.79  E-value=8.8e-18  Score=171.88  Aligned_cols=178  Identities=22%  Similarity=0.351  Sum_probs=147.8

Q ss_pred             CCeeeecCceeEEcc-CCeEEEEEEEeccCC--CeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         452 APSFIRALHDTTALE-DEKVEFTVQVEGIPT--PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~-g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      +|.+.. +....+.. |+++.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++...|+|.|+|.+.
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEE
Confidence            566655 44556666 999999999999887  7899999999886543321     34689999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC---CCCceEEEeecce
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT---SGGRYEITHTDRY  603 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~---~~~~~~~~~~~~~  603 (1101)
                      |. |.......|.|..+|.+...+.   ...+..|..+.|.|.+.|.|.+.+.|++  +|..+.   .+.++.+...+..
T Consensus        77 n~-~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~  152 (190)
T 2wv3_A           77 FV-SAPKANATIEVKAAPDITGHKR---SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY  152 (190)
T ss_dssp             ET-TEEEEEEEEEEECCCEEEEECS---EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSE
T ss_pred             eC-CcccccEEEEEecCCcccccCC---cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCe
Confidence            99 8888889999999988765443   3468899999999999999999999999  777664   4566777666667


Q ss_pred             EEEEEccCC-CCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         604 LNLRISDAR-RADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       604 ~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      +.|.|.++. ..|.|.|+|.|.|..|....+..|.|.
T Consensus       153 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            799999999 799999999999999998888887774

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=193.42  Aligned_cols=268  Identities=17%  Similarity=0.239  Sum_probs=186.5

Q ss_pred             CCCCCeeeecCceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       449 ~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      +..+|.|.. |.+..+.+|+++.|.|.+.+. |.+.+.|+++|..+....++.+.  .+...|.|.++...|+|.|+|.|
T Consensus         4 ~~~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~   80 (317)
T 2y25_A            4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVIL   80 (317)
T ss_dssp             SSSCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEE
T ss_pred             ccCCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEEE
Confidence            356788874 446889999999999999887 78899999999998766655543  33469999999999999999999


Q ss_pred             EeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee----------cCCCeeEEEECCeecCCCCceEE
Q psy8139         528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG----------MPPPTARWLHNGEPLTSGGRYEI  597 (1101)
Q Consensus       528 ~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g----------~p~~~v~W~~~g~~l~~~~~~~~  597 (1101)
                      .|..|.......|.|..+|.+...+.   ...+..|..+.|.|.+.+          .|.+.+.|+++|..+..+.++.+
T Consensus        81 ~n~~g~~~~~~~l~v~~~~~~~~~~~---~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~  157 (317)
T 2y25_A           81 KDDRGKDKSRLKLVDEAFKELMMEVC---KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT  157 (317)
T ss_dssp             ESSSCEEEEEECCSTHHHHHHHHHHH---HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEE
T ss_pred             ECCCCcEEEEEEEEEecCccccccCC---ceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEE
Confidence            99999877777777665443321110   112234555556665555          68999999999999988777877


Q ss_pred             EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec-----------------CCCCCC-----ccEEEEecC
Q psy8139         598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD-----------------RPLPPG-----KAKVVMTLG  655 (1101)
Q Consensus       598 ~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~-----------------~P~~P~-----~~~~~~~~~  655 (1101)
                      ...+....|.|.++...|.|.|+|.|.|..|....+..+.+..                 ...+|.     .-......+
T Consensus       158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          158 GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             EECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             eccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence            7777778899999999999999999999988877776665431                 111110     112344567


Q ss_pred             CeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCce
Q psy8139         656 KSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV  735 (1101)
Q Consensus       656 ~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~  735 (1101)
                      ..+.|.|...+.+                                  ...+.|....    .++.         .+.. .
T Consensus       238 ~~~~l~C~~~g~p----------------------------------~p~i~W~~~g----~~~~---------~~~~-~  269 (317)
T 2y25_A          238 KALNLTCNVWGDP----------------------------------PPEVSWLKNE----KALA---------SDDH-C  269 (317)
T ss_dssp             SBBCEEEEEECSS----------------------------------CCEEEEEESS----SEEC---------CCSS-E
T ss_pred             CEEEEEEEEecCC----------------------------------CCEEEEEECC----EeCC---------CCCc-E
Confidence            7888888753211                                  1246776421    1110         0111 1


Q ss_pred             eecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         736 RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       736 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      .+....+....++|.++.+.....|.|.|.|..|.
T Consensus       270 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  304 (317)
T 2y25_A          270 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS  304 (317)
T ss_dssp             EECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEE
T ss_pred             EEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCe
Confidence            11111133458899999999999999999999997

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.79  E-value=1.3e-17  Score=208.67  Aligned_cols=145  Identities=24%  Similarity=0.285  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139           3 QCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCM   82 (1101)
Q Consensus         3 ~~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r   82 (1101)
                      +.+++...+..+|+.||+.||||++|+++.    .++.||+.||++|||+++|++.+  +.+...||+.||++|||+++|
T Consensus       759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~----~~r~aai~IQ~~~Rg~~aR~~~~--~lr~~~AAi~IQs~~Rg~~~R  832 (1080)
T 2dfs_A          759 LEKIRADKLRAACIRIQKTIRGWLMRKKYM----RMRRAAITIQRYVRGHQARCYAT--FLRRTRAAIIIQKFQRMYVVR  832 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhccc--ccccchhHHHHHHHHhhHHHH
Confidence            456667788899999999999999999765    56789999999999999554322  234468999999999999985


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139          83 RQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTEL--KQACVSVQQRWRANLTMRKQRAHFLLM  160 (1101)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~--~~aa~~iQ~~~R~~~~r~~~r~~~~~~  160 (1101)
                      +.                  |.+...+++.||++|||++++    +.|..+  ..+++.||++|||+++|+.    |.+.
T Consensus       833 k~------------------y~~lr~aai~IQs~~Rg~laR----r~~~~lr~~~aav~IQ~~~Rg~l~R~~----y~~~  886 (1080)
T 2dfs_A          833 KR------------------YQCMRDATIALQALLRGYLVR----NKYQMMLREHKSIIIQKHVRGWLARVH----YHRT  886 (1080)
T ss_dssp             HH------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTTHHHHH----TTTT
T ss_pred             HH------------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            54                  456668999999999977544    444433  3579999999999996554    4556


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy8139         161 KQKASVIQQWYRNTKLMRL  179 (1101)
Q Consensus       161 ~~aa~~IQ~~~R~~~~rr~  179 (1101)
                      +.|++.||++|||+++|+.
T Consensus       887 ~~aai~iQs~~R~~laRr~  905 (1080)
T 2dfs_A          887 LKAIVYLQCCYRRMMAKRE  905 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHH
Confidence            7899999999999999886

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.78  E-value=1.9e-18  Score=177.16  Aligned_cols=185  Identities=26%  Similarity=0.400  Sum_probs=152.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.|...+.++.+..|++++|.|.+.+.|.+.+.|++++..+.. ..++.+...+.  .|.|.++...|+|.|+|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEEE
Confidence            3567777788888999999999999999999999999999998765 34555544443  79999999999999999999


Q ss_pred             eCCCce-EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEE
Q psy8139         529 NRAGHS-ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       529 n~~g~~-~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                      |..|.. .....|.|..+|.+..++.   ...+..|..+.|.|.+.+.|.+.+.|++++..+....++.+..   .+.|.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~---~~~L~  156 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPI---NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE---SGSLR  156 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCC---CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECT---TSCEE
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCc---ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEec---CCcEE
Confidence            998874 4567888888887765543   4578899999999999999999999999999988766655443   34799


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEecCC
Q psy8139         608 ISDARRADRGEYQAHGVNSLGED-VASFLVTVTDRP  642 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~~~P  642 (1101)
                      |.++...|.|.|+|.|.|..|.. +....|.|..+|
T Consensus       157 i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          157 IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999999999977 446778877554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.78  E-value=5e-18  Score=175.82  Aligned_cols=178  Identities=18%  Similarity=0.221  Sum_probs=138.1

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecC--CeeEEEEeecCCCCCEEEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDN--DISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .|.|.. +.++.+.+|+.+.|.|.+. +.|.|.|+|+++|..+..+.++.+...+  +..+|.|.++...|+|.|+|.|.
T Consensus         3 ~p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            3 DPFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             ---CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCeeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            455544 3478899999999999996 4799999999999999877777666554  55689999999999999999999


Q ss_pred             eCCCceEEEEEEeec---------------------cCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCCeeEEEECC
Q psy8139         529 NRAGHSITKARLRLE---------------------APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNG  586 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~---------------------~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~g  586 (1101)
                      |  |.......+.+.                     .+|.+..++    ...+..|..+.|.|.+.|. |.|.+.|+++|
T Consensus        82 N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~----~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g  155 (207)
T 3rbs_A           82 D--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL----SWEVTGECNVLLKCKVANIKKETHIVWYKDE  155 (207)
T ss_dssp             E--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE----EEEEETTTEEEEEEEEESCCTTCEEEEEETT
T ss_pred             C--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC----CcEEcCCCcEEEEEEEeCCCCCCEEEEEECC
Confidence            9  544444433211                     134443222    2467889999999999998 99999999999


Q ss_pred             eecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         587 EPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       587 ~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .++..+.++.  ...+..+|.|.++.+.|.|.|+|.|.|..|....++.|+.
T Consensus       156 ~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          156 REISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            9987655432  2334567999999999999999999999999888777654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.78  E-value=5.1e-18  Score=190.26  Aligned_cols=221  Identities=14%  Similarity=0.164  Sum_probs=143.2

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-  482 (1101)
                      ...+|.|.++++.|+|.|+|.|.|..|.......+..+.+.+... +.+|.+. .| ...+..|+.+.|.|.+.|.|++ 
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~-p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~  148 (327)
T 2wng_A           72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAK-PSAPVVS-GP-AARATPQHTVSFTCESHGFSPRD  148 (327)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBC-CCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSC
T ss_pred             ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEec-CCCceee-cc-ccccCCCCEEEEEEEEeCccCCC
Confidence            346799999999999999999999765421111122344444432 3445443 33 4667899999999999998876 


Q ss_pred             -eEEEEECCEEeecCCcEEEEe-cCC----eeEEEEeecCCCCCEEEEEEEEeCCCce---EEEEEE--eeccCCccccC
Q psy8139         483 -KVSWYKDGFEIFSSRRQRIVT-DND----ISTLIIHQAALMDEGEIKCTATNRAGHS---ITKARL--RLEAPPTIRLP  551 (1101)
Q Consensus       483 -~v~W~~~g~~~~~~~~~~~~~-~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~---~~s~~l--~V~~~p~~~~~  551 (1101)
                       .++|+++|..+.......... .++    .+.|.|......|.|.|+|.|.|..|..   ..+..+  .+..+|.+...
T Consensus       149 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~  228 (327)
T 2wng_A          149 ITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVT  228 (327)
T ss_dssp             CEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEE
T ss_pred             cEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEe
Confidence             899999998876443211111 111    1257777667777899999999988763   334444  34556665443


Q ss_pred             CCCCCCeEEeeCCEEEEEEEEeecC-CC-eeEEEECCeecCCCCceEEEeecc-----eEEEEEccCCCCCCeEEEEEEE
Q psy8139         552 KQYEDGLLFEMGEIIKLKVSMAGMP-PP-TARWLHNGEPLTSGGRYEITHTDR-----YLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       552 ~~~~~~~~v~~g~~~~l~c~~~g~p-~~-~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      +.     .+..|+.+.|.|.+.|.+ .+ .+.|+++|..+..+....+...++     ...|.|..+...|.|.|+|.|.
T Consensus       229 ~~-----~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~  303 (327)
T 2wng_A          229 QQ-----PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE  303 (327)
T ss_dssp             EE-----CCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEE
T ss_pred             cC-----CcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEE
Confidence            22     155799999999999954 44 899999998875422111111111     2468888999999999999999


Q ss_pred             eCCCCcee
Q psy8139         625 NSLGEDVA  632 (1101)
Q Consensus       625 N~~G~~~~  632 (1101)
                      |..|....
T Consensus       304 N~~~~~~s  311 (327)
T 2wng_A          304 HDGQPAVS  311 (327)
T ss_dssp             ETTCCCEE
T ss_pred             eCCCCCch
Confidence            99987543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.78  E-value=1.8e-17  Score=182.28  Aligned_cols=266  Identities=21%  Similarity=0.280  Sum_probs=188.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEE-CCEEeecC-CcEEEEe-cCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYK-DGFEIFSS-RRQRIVT-DNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~-~g~~~~~~-~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      +|.+...|.+..+..|++++|.|.+.+.| .+.+.|++ +|..+... .++.+.. .+....|.|.++...|+|.|+|.+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            46677788889999999999999999987 68999999 77766533 3444432 345679999999999999999999


Q ss_pred             EeCCCce-EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceE
Q psy8139         528 TNRAGHS-ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYL  604 (1101)
Q Consensus       528 ~n~~g~~-~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~  604 (1101)
                      .|..|.. .....|.|..+|.+...+.   ...+..|+.+.|.|.+.+.|.+.+.|++++..+....  ++...   ...
T Consensus        82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~---~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~  155 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL---SNN  155 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECCSEEEECCS---SEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC---TTS
T ss_pred             EcCCCCeeEEEEEEEeeccccccCCCC---cccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc---cCC
Confidence            9998653 4567788888887765543   4478899999999999999999999999998875432  33322   245


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCce--eEEEEEEecCCCCC---CccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDV--ASFLVTVTDRPLPP---GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE  679 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~--~s~~l~v~~~P~~P---~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~  679 (1101)
                      .|.|.++...|.|.|+|.|.|..+...  ....+.|..+|...   .........+..+.|.|...+.+           
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p-----------  224 (291)
T 1qz1_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP-----------  224 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEES-----------
T ss_pred             cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeC-----------
Confidence            799999999999999999999875433  34556665554321   11233445677899999853211           


Q ss_pred             EEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       680 ~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                                             ...+.|....    .++..     .... ......   ......++|.++.+.....
T Consensus       225 -----------------------~p~i~W~~~g----~~~~~-----~~~~-~~~~~~---~~~~~~L~i~~v~~~d~G~  268 (291)
T 1qz1_A          225 -----------------------EPTMSWTKDG----EPIEN-----EEED-DEKHIF---SDDSSELTIRNVDKNDEAE  268 (291)
T ss_dssp             -----------------------CCEEEEEETT----EECCC-----C--C-CSSEEE---CTTSCEEEECSCCGGGCEE
T ss_pred             -----------------------CCcEEEEECC----EECcC-----CCCC-CcceEE---cCCCcEEEEEecChhcCEE
Confidence                                   1246776421    11100     0000 000111   1344679999999999999


Q ss_pred             EEEEEEcCCcc
Q psy8139         760 FRITAENVVGF  770 (1101)
Q Consensus       760 ~~V~A~n~~G~  770 (1101)
                      |.|.|.|..|.
T Consensus       269 Y~C~a~N~~G~  279 (291)
T 1qz1_A          269 YVCIAENKAGE  279 (291)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEeCCCc
Confidence            99999999996

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.78  E-value=1e-17  Score=172.15  Aligned_cols=177  Identities=18%  Similarity=0.289  Sum_probs=147.1

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCC--cEEEEecCC-------eeEEEEeecCCCCCE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSR--RQRIVTDND-------ISTLIIHQAALMDEG  521 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~-------~~~l~I~~l~~~d~g  521 (1101)
                      +|.|...|.+..+..|++++|.|.+. |.|.+.+.|+++|..+....  ++.+.....       .+.|.|.++...|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            57788899999999999999999999 99999999999999887652  333333332       468999999999999


Q ss_pred             EEEEEEEeCCCceEEE-EEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEe
Q psy8139         522 EIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITH  599 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s-~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~  599 (1101)
                      .|+|.+.|..|..... +.|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+ .+.|++++..+......    
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE---DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEECCC---CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEcCCC---cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----
Confidence            9999999988765543 8899998888765543   3578889999999999999999 99999999888755432    


Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCCCce-eEEEEEE
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTV  638 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~-~s~~l~v  638 (1101)
                       .....|.|.++.  +.|.|+|.|.|..|... ....|.|
T Consensus       155 -~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 -GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             -SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence             346789999988  78999999999999875 6777877

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=190.94  Aligned_cols=227  Identities=15%  Similarity=0.194  Sum_probs=160.9

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCC-Ce
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT-PK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~-~~  483 (1101)
                      ...|.|.+++..|.|.|+|.|.|..|..     +..+.+.+..   .+..+...+.+..+.+|+++.|.|.+.+.+. +.
T Consensus        50 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-----~~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~  121 (292)
T 4dkd_C           50 SSILSTNNATFQNTGTYRCTEPGDPLGG-----SAAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAG  121 (292)
T ss_dssp             EEEEEESSCCGGGCSCEEECCCC----C-----CEEECCEECC---SSCCEEESCSEEEEETTSCEECCEEESSGGGGSS
T ss_pred             eEEEEEcccccccCEEEEEEEccCCCCc-----ceEEEEEEcC---ccccccccCCeEEEcCCCcEEEeeeCCCCCccee
Confidence            4589999999999999999999977654     2334444432   1222455677888999999999999998332 68


Q ss_pred             EEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeecc----CCccccCCCCCCC
Q psy8139         484 VSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA----PPTIRLPKQYEDG  557 (1101)
Q Consensus       484 v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~----~p~~~~~~~~~~~  557 (1101)
                      +.|+++ +..+.....+.....+   .|.|.++...|+|.|+|.|.|..|.... ...|.|..    +|.+...+.   .
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~---~  195 (292)
T 4dkd_C          122 VSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA---E  195 (292)
T ss_dssp             EEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS---C
T ss_pred             EEEEecCCCccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC---c
Confidence            999997 5555444444433222   4999999999999999999998776544 67888876    666655443   2


Q ss_pred             eEEeeCCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ..+..|+.+.|.|.+.+.|. +.+.|.+++..+...........  .....|.|.++...|.|.|+|.|.|..|....+.
T Consensus       196 ~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  275 (292)
T 4dkd_C          196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM  275 (292)
T ss_dssp             BCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred             eeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEE
Confidence            24468999999999998764 57888888876654332222111  1246899999999999999999999999988888


Q ss_pred             EEEEecCCCCC
Q psy8139         635 LVTVTDRPLPP  645 (1101)
Q Consensus       635 ~l~v~~~P~~P  645 (1101)
                      .|.|.....++
T Consensus       276 ~l~V~~~~~~~  286 (292)
T 4dkd_C          276 FFRVVESAGNS  286 (292)
T ss_dssp             EECC-------
T ss_pred             EEEEeeCCCcc
Confidence            88888765543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.77  E-value=5.9e-18  Score=188.75  Aligned_cols=229  Identities=14%  Similarity=0.101  Sum_probs=151.9

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..+....+..+..+.+.+... ..+|.+...|... +.+|++++|.|.+.+ +.+.
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~-~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~  148 (316)
T 3vh8_G           72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN-HRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEH  148 (316)
T ss_dssp             BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECS-SCCCEEEEESCSE-EETTCCEEEEEEESS-CCSE
T ss_pred             ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecC-CCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcE
Confidence            356899999999999999999998665444444556677766532 3456776666554 889999999999954 5668


Q ss_pred             EEEEECCEEeecCCcEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-----EEEEEEeecc---CCccccCCCC
Q psy8139         484 VSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-----ITKARLRLEA---PPTIRLPKQY  554 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-----~~s~~l~V~~---~p~~~~~~~~  554 (1101)
                      +.|++++..+....... .........|.|.++...|+|.|+|.|.|..|..     +....|.|..   +|.+...+. 
T Consensus       149 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-  227 (316)
T 3vh8_G          149 FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-  227 (316)
T ss_dssp             EEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-
T ss_pred             EEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-
Confidence            99999987664321111 1112234589999999999999999999988752     3345666653   344433322 


Q ss_pred             CCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE-eecceEEEEEccCCCCCCeEEEEEEEeCCCC----
Q psy8139         555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGE----  629 (1101)
Q Consensus       555 ~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~----  629 (1101)
                         ..+..|+.++|.|.+. .+.+.+.|+++|..+......... .......|.|.++.  |.|.|+|.|.|..+.    
T Consensus       228 ---~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s  301 (316)
T 3vh8_G          228 ---PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWS  301 (316)
T ss_dssp             ---SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEEC
T ss_pred             ---CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhcc
Confidence               1457799999999997 577899999999876532111111 11224789999999  999999999998764    


Q ss_pred             -ceeEEEEEEecCC
Q psy8139         630 -DVASFLVTVTDRP  642 (1101)
Q Consensus       630 -~~~s~~l~v~~~P  642 (1101)
                       .+....|.|.+.|
T Consensus       302 ~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          302 DPSDPLLVSVTGNP  315 (316)
T ss_dssp             CCCCCEEC------
T ss_pred             CCCCcEEEEEeCCC
Confidence             2345566666554

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.77  E-value=2e-17  Score=195.67  Aligned_cols=339  Identities=13%  Similarity=0.083  Sum_probs=190.2

Q ss_pred             hhhhhhhcccccCcceEEEeeeccccc-----ccccceeeeccCC-CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCc
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGL-----NVGTDLYCVIKKP-PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  378 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~-----~~s~~~~~~v~~~-p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~  378 (1101)
                      .+.|.|.++..+|+|.|+|.+.+..|.     ..+....+.|... +.+|. ..............++|.|....   ..
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-i~~~~~~~~~~g~~v~L~C~~~g---~~  154 (475)
T 1iga_A           79 TAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPK-VFPLSLCSTQPDGNVVIACLVQG---FF  154 (475)
T ss_pred             eEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCe-EEecCccccCCCCeEEEEEEEee---ec
Confidence            357999999999999999999877652     1233345555431 22221 11110000123455666665531   10


Q ss_pred             CeeEEEEEEEecCCC-ceEE-------cCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC--
Q psy8139         379 PVLGYLVEHRRTGSP-YWVR-------ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS--  448 (1101)
Q Consensus       379 ~i~~Y~v~~~~~~~~-~w~~-------~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~--  448 (1101)
                      +.....|.|...+.. .-..       .+........|+|......|.|.|+|.|.|..|..    .+..+.+.+...  
T Consensus       155 P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~----~~~~v~l~V~~~~~  230 (475)
T 1iga_A          155 PQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS----QDVTVPCPVPSTPP  230 (475)
T ss_pred             CCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc----eeeeEecccccCcc
Confidence            100012222211110 0000       00000111357888888899999999999988632    122233222110  


Q ss_pred             -----------C-CCCCee-eecCceeEEccCCeEEEEEEEeccCC---CeEEEEECCEEeecCCc--EEEEecC---Ce
Q psy8139         449 -----------P-AAAPSF-IRALHDTTALEDEKVEFTVQVEGIPT---PKVSWYKDGFEIFSSRR--QRIVTDN---DI  507 (1101)
Q Consensus       449 -----------~-~~~P~~-~~~p~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~g~~~~~~~~--~~~~~~~---~~  507 (1101)
                                 + ..+|.+ ...|....+..|++++|.|.+.|.++   +.|+|  ++..+.....  .....++   ..
T Consensus       231 ~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~  308 (475)
T 1iga_A          231 TPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVS  308 (475)
T ss_pred             cccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEE
Confidence                       0 124544 33344444689999999999998754   68999  4433321110  0001011   23


Q ss_pred             eEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe---eccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-C-CCeeEE
Q psy8139         508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLR---LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-P-PPTARW  582 (1101)
Q Consensus       508 ~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~---V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p-~~~v~W  582 (1101)
                      +.|.|.++...|+|.|+|.|.|..|.......+.   +..+|.+...+..  ...+..|..+.|.|.+.|. | .+.|.|
T Consensus       309 ~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~--~~~v~~g~~~~L~C~~~g~~P~~~~v~W  386 (475)
T 1iga_A          309 SVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP--SEELALNELVTLTCLARGFSPKDVLVRW  386 (475)
T ss_pred             EEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCC--hHHhccCCceEEEEEEeeeECCCCEEEE
Confidence            4799999999999999999999988765544553   3456655433221  1125578889999999986 3 359999


Q ss_pred             EECCeecCCCCceE----EE---eec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEE
Q psy8139         583 LHNGEPLTSGGRYE----IT---HTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVM  652 (1101)
Q Consensus       583 ~~~g~~l~~~~~~~----~~---~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~  652 (1101)
                      +++|..+..+....    ..   ..+   ..+.|.|......+.|.|+|.|.|......... -.+...|+.|..+.+..
T Consensus       387 ~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~~~~~-~~~~~~~~~~~~~~~~~  465 (475)
T 1iga_A          387 LQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQ-KTIDRLAGKPTHVNVSV  465 (475)
T ss_pred             EECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCCcceE-EEEecCCCCceeEEEEE
Confidence            99999886543111    11   111   124566777777789999999999865432221 22234455554554444


Q ss_pred             ecCC
Q psy8139         653 TLGK  656 (1101)
Q Consensus       653 ~~~~  656 (1101)
                      ..++
T Consensus       466 ~~~~  469 (475)
T 1iga_A          466 VMAE  469 (475)
T ss_pred             EEhh
Confidence            4443

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.77  E-value=9.5e-17  Score=175.79  Aligned_cols=263  Identities=17%  Similarity=0.192  Sum_probs=166.4

Q ss_pred             ccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecC-CCceEEcCccccccceEEEcCccCCccE
Q psy8139         341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWRY  419 (1101)
Q Consensus       341 v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~-~~~w~~~~~~~~~~~~l~i~~L~p~d~y  419 (1101)
                      ..++|.+|..+..   . .++.+++.|+|.+|.    ..+.+|.|+++... ...|.... ......++.|.+|.|++.|
T Consensus        11 ~~~~p~~P~~l~~---~-~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y   81 (283)
T 1tdq_A           11 GIPVIDGPTQILV---R-DVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFR-LQPPLSQYSVQALRPGSRY   81 (283)
T ss_dssp             -CCSSCCCEEEEE---E-EECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEE-ECTTCSEEEECSCCTTCEE
T ss_pred             cccCCCCCcEEEE---E-ecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEE-eCCCCCEEEecCCCCCCEE
Confidence            3445555555444   3 778899999999984    47889999996543 23343222 2245678999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE
Q psy8139         420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ  499 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~  499 (1101)
                      .|+|.|.|..|.+.+      ..+.... ++.+|      .++          .+...+.....+.|....         
T Consensus        82 ~~~V~a~~~~g~s~~------~~~~~~t-~p~~P------~~l----------~~~~~~~~sv~l~W~~p~---------  129 (283)
T 1tdq_A           82 EVSISAVRGTNESDA------SSTQFTT-EIDAP------KNL----------RVGSRTATSLDLEWDNSE---------  129 (283)
T ss_dssp             EEEEEEEETTEECCC------EEEEEEC-CCCCC------EEE----------EEEEECSSCEEEEEECCS---------
T ss_pred             EEEEEEECCCCCCCC------eeEEEEC-CCCCC------Cce----------EEEecCCCeEEEEecCCC---------
Confidence            999999998776532      2222221 11222      122          222222233456664321         


Q ss_pred             EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCe
Q psy8139         500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT  579 (1101)
Q Consensus       500 ~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~  579 (1101)
                                        +..-.|.+......+...                                            
T Consensus       130 ------------------~~i~~Y~v~~~~~~~~~~--------------------------------------------  147 (283)
T 1tdq_A          130 ------------------AEAQEYKVVYSTLAGEQY--------------------------------------------  147 (283)
T ss_dssp             ------------------SCCSEEEEEEEETTCCCC--------------------------------------------
T ss_pred             ------------------CCccEEEEEEEeCCCCcc--------------------------------------------
Confidence                              000112222211111000                                            


Q ss_pred             eEEEECCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCC
Q psy8139         580 ARWLHNGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGK  656 (1101)
Q Consensus       580 v~W~~~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~  656 (1101)
                                     ..+....   ....+.|.+|.+++.|.|++.|.|..|.+.. ..+.....|.+|.++.+...+.+
T Consensus       148 ---------------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~-~~~~~~t~~~~P~~l~~~~~~~~  211 (283)
T 1tdq_A          148 ---------------HEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP-ATMNARTELDSPRDLMVTASSET  211 (283)
T ss_dssp             ---------------EEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCC-EEEEEECCCCCCEEEEEEEECSS
T ss_pred             ---------------eEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcc-eEEEecCCCCCCCccEEeEecCC
Confidence                           0000011   1456889999999999999999999886544 34555567778888888888888


Q ss_pred             eEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCcee
Q psy8139         657 SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR  736 (1101)
Q Consensus       657 sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~  736 (1101)
                      ++.|+|++|.                                                  +++.+|.|+|...++..+..
T Consensus       212 sv~l~W~~p~--------------------------------------------------~~i~~Y~v~~~~~~~~~~~~  241 (283)
T 1tdq_A          212 SISLIWTKAS--------------------------------------------------GPIDHYRITFTPSSGISSEV  241 (283)
T ss_dssp             CEEEEEECCC--------------------------------------------------SCCSEEEEEEECSSSCCEEE
T ss_pred             EEEEEEeCCC--------------------------------------------------CcccEEEEEEEcCCCCeeEE
Confidence            8888887642                                                  24677888777765533222


Q ss_pred             ecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         737 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       737 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ..  ....++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus       242 ~~--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~  277 (283)
T 1tdq_A          242 TV--PRDRTSYTLTDLEPGAEYIISITAERGRQQSLES  277 (283)
T ss_dssp             EE--ESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             Ee--CCCccEEEECCCCCCCEEEEEEEEEcCCCCCcce
Confidence            22  2677899999999999999999999999997764

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.76  E-value=4e-17  Score=179.50  Aligned_cols=128  Identities=13%  Similarity=0.019  Sum_probs=91.9

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec---CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD---RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE  679 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~---~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~  679 (1101)
                      ...+.+.+|.+++.|.|+|.|.|..|.+.. ..+.+..   .|..|..+.+...+.+++.|+|++|.             
T Consensus       156 ~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~-~~~~~~t~~~~P~~~p~~~~~~~~~~sv~l~W~~~~-------------  221 (290)
T 3l5i_A          156 HRTYLRGNLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLP-------------  221 (290)
T ss_dssp             SEEECCSCCCTTCEEEEEEEEEETTEECCC-EEEEEESSCCCCSSCCCEEEEEECSSCEEEEECCCC-------------
T ss_pred             cceEEecCcCCccEEEEEEEEEeCCccccc-EEEEeEccccCCCCCCeeeEeeccCCEEEEEEcCCC-------------
Confidence            456778899999999999999999997664 2333333   34444466666677777777777431             


Q ss_pred             EEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       680 ~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                                                      ..+.++.|.+|.|+|+..++. |.... .....++++|.+|.|++.|.
T Consensus       222 --------------------------------~~~~~g~i~~Y~v~~~~~~~~-~~~~~-~~~~~~~~~~~~L~p~t~Y~  267 (290)
T 3l5i_A          222 --------------------------------VDVQNGFIRNYTIFYRTIIGN-ETAVN-VDSSHTEYTLSSLTSDTLYM  267 (290)
T ss_dssp             --------------------------------HHHHSSCCCEEEEEEEETTSC-CEEEE-EETTCSEEEECSCCTTCEEE
T ss_pred             --------------------------------hhccCCEEEEEEEEEEeCCCC-eEEEE-eCCCceEEEeCCCCCCCEEE
Confidence                                            122345688999999887654 33322 23678899999999999999


Q ss_pred             EEEEEEcCCccCCCCCCCCc
Q psy8139         760 FRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       760 ~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      |+|.|.|..| |++|+...+
T Consensus       268 ~~V~A~n~~G-g~~s~~~~~  286 (290)
T 3l5i_A          268 VRMAAYTDEG-GKDGPEFTF  286 (290)
T ss_dssp             EEEEEEETTE-EEECCCEEE
T ss_pred             EEEEEEeCCC-CCCCCceEe
Confidence            9999999999 776655433

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.76  E-value=2.2e-18  Score=202.32  Aligned_cols=310  Identities=14%  Similarity=0.120  Sum_probs=177.1

Q ss_pred             hhhhhhhcccccCcceEEEeeeccccc--ccccceeeeccCC-CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCee
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGL--NVGTDLYCVIKKP-PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  381 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~--~~s~~~~~~v~~~-p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~  381 (1101)
                      .+.|.|.++..+|+|.|.|.+.|..|.  ..+....+.+... +.+|................++|.|....   ..+. 
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g---~~P~-  153 (444)
T 1igt_B           78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKG---YFPE-  153 (444)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEE---EBSS-
T ss_pred             eEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcc---eeCC-
Confidence            357999999999999999999876543  2333345555432 11221000000000122345555554420   0000 


Q ss_pred             EEEEEEEecCCCc-eE-----EcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc--------
Q psy8139         382 GYLVEHRRTGSPY-WV-----RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR--------  447 (1101)
Q Consensus       382 ~Y~v~~~~~~~~~-w~-----~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~--------  447 (1101)
                      ...+.|...+... ..     ...........|.|.++...| |.|+|.|.|..|...       +...+..        
T Consensus       154 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-------~~~~i~~~~~~~~~~  225 (444)
T 1igt_B          154 PVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK-------VDKKIEPRGPTIKPC  225 (444)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE-------EEEECCCCCCSCCCC
T ss_pred             CcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc-------eEEEeccCCCCcccC
Confidence            0112222211110 00     000001112468899999888 999999999887531       1222111        


Q ss_pred             --------CCCCCCee-eecCceeE-EccCCeEEEEEEEeccC----CCeEEEEECCEEeecCCcE--EEEecC---Cee
Q psy8139         448 --------SPAAAPSF-IRALHDTT-ALEDEKVEFTVQVEGIP----TPKVSWYKDGFEIFSSRRQ--RIVTDN---DIS  508 (1101)
Q Consensus       448 --------~~~~~P~~-~~~p~~~~-v~~g~~v~L~C~~~g~p----~~~v~W~~~g~~~~~~~~~--~~~~~~---~~~  508 (1101)
                              ....+|.+ ...|.... +..|++++|.|.+.|.|    .+.++|++++..+......  ....++   ..+
T Consensus       226 ~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~  305 (444)
T 1igt_B          226 PPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS  305 (444)
T ss_dssp             CCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEE
T ss_pred             CccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEE
Confidence                    11235665 34343333 58899999999999884    3689999999887543211  111111   234


Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCceEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEE
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGHSITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARW  582 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W  582 (1101)
                      .|.|.++...|+|.|+|.|.|..|.......+    .+..+|.+...+....  .+ .+..+.|.|.+.| .|.+ .|.|
T Consensus       306 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~-~~~~~~L~C~~~g~~P~~~~v~W  382 (444)
T 1igt_B          306 ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEE--EM-TKKQVTLTCMVTDFMPEDIYVEW  382 (444)
T ss_dssp             EEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGG--GT-TSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChH--Hc-cCCeEEEEEEEEeeeCCCCEEEE
Confidence            89999999999999999999998876333333    3445666543222110  12 2445999999998 4555 9999


Q ss_pred             EECCeecCCCCceEE--Eeecc---eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         583 LHNGEPLTSGGRYEI--THTDR---YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       583 ~~~g~~l~~~~~~~~--~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +++|..+........  ...+.   .+.+.|......+.|.|+|.|.|..-.
T Consensus       383 ~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          383 TNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             EETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             EECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence            999988743211111  11111   234556665556799999999997543

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.76  E-value=2.9e-19  Score=226.09  Aligned_cols=346  Identities=14%  Similarity=0.139  Sum_probs=173.8

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEec--------------CCCceEEcCcccc---------ccceEEEcCccC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--------------GSPYWVRASPHMV---------EDTELMVSGLEP  415 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~--------------~~~~w~~~~~~~~---------~~~~l~i~~L~p  415 (1101)
                      .+++++++|+|.+|..+++.+|.+|.|+++..              +...|........         ...++.|.+|.|
T Consensus       479 ~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~L~P  558 (897)
T 2dtg_E          479 RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKP  558 (897)
T ss_dssp             EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCS
T ss_pred             EEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeCCCCC
Confidence            67899999999999766777999999999765              2345765432221         247799999999


Q ss_pred             CccEEEEEEE-EecCCCCC-CCCCCcceEEEeccCCCCCCeeeecCceeEEc--cCCeEEEEEEEeccCCCe-----EEE
Q psy8139         416 GWRYQFRITA-ENVVGFSE-PGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL--EDEKVEFTVQVEGIPTPK-----VSW  486 (1101)
Q Consensus       416 ~d~y~y~c~A-~n~~G~~~-~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~--~g~~v~L~C~~~g~p~~~-----v~W  486 (1101)
                      ++.|.|+|.| .|..|.+. ++..|..+.+.....++.      .|.++.+.  ...++.|.|.....+...     |.|
T Consensus       559 ~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps------~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~  632 (897)
T 2dtg_E          559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS------VPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFW  632 (897)
T ss_dssp             SCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCC------CCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCE
T ss_pred             CcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCc------CCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEE
Confidence            9999999999 89888732 233345555543332222      33444433  345566666544222222     223


Q ss_pred             EECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEE
Q psy8139         487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII  566 (1101)
Q Consensus       487 ~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~  566 (1101)
                      ...+..    ...   ....  ......+.+...|.+.+.|.+..+................+..+             .
T Consensus       633 ~~~~~~----~~~---~~~~--~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p-------------~  690 (897)
T 2dtg_E          633 ERQAED----SEL---FELD--YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD-------------S  690 (897)
T ss_dssp             EEECCC----CSC---TTCS--SSCSCCCCCC------------------------------------------------
T ss_pred             EECCCC----ccc---eecc--cccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcc-------------c
Confidence            221110    000   0000  01112245677788888888775443222110000000000000             0


Q ss_pred             EEEEEEeecCCCeeEEEECCeec---C--C---------------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         567 KLKVSMAGMPPPTARWLHNGEPL---T--S---------------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       567 ~l~c~~~g~p~~~v~W~~~g~~l---~--~---------------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+. .........+.|.......   .  .               ...+.+...+...+++|.+|.+++.|.|++.|.|.
T Consensus       691 ~~~-~~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~  769 (897)
T 2dtg_E          691 QIL-KELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQ  769 (897)
T ss_dssp             ----------------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESC
T ss_pred             chh-hhhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeC
Confidence            000 0011122334443210000   0  0               00011112223468999999999999999999999


Q ss_pred             CCCcee---EEEEEEecC-----CCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCC
Q psy8139         627 LGEDVA---SFLVTVTDR-----PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPS  698 (1101)
Q Consensus       627 ~G~~~~---s~~l~v~~~-----P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~  698 (1101)
                      .|.+..   +..+.+.+.     |.+|.++.+.                                              .
T Consensus       770 ~G~g~~~s~s~~v~~~T~~~~~~p~~P~~l~~~----------------------------------------------~  803 (897)
T 2dtg_E          770 DTPEERCSVAAYVSARTMPEAKADDIVGPVTHE----------------------------------------------I  803 (897)
T ss_dssp             SSSSCCBCCCCCEEEECCCCCCCCCCCCCCCCC----------------------------------------------S
T ss_pred             CCCCCCCCCCceeEEeccCccCCCCCCcceEEE----------------------------------------------e
Confidence            986532   333333332     2333333333                                              3


Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      .+.+++.|+|++|...+ +.|.+|.|+|+..++..+.....  .....+.++|.+|.|+ .|.|+|+|.|..|.|++|++
T Consensus       804 ~~~~sv~LsW~~P~~~n-G~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~  881 (897)
T 2dtg_E          804 FENNVVHLMWQEPKEPN-GLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEP  881 (897)
T ss_dssp             SSSSCCCCCCCCCCSCS-SCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCC
T ss_pred             CCCCEEEEEECCCCCCC-CCEEEEEEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCC
Confidence            44556666666664433 45888888888766522222111  1246678999999999 69999999999999998876


Q ss_pred             CCcEE
Q psy8139         777 SEPLT  781 (1101)
Q Consensus       777 s~~~t  781 (1101)
                      ..+.|
T Consensus       882 v~~~T  886 (897)
T 2dtg_E          882 TYFYV  886 (897)
T ss_dssp             CEECC
T ss_pred             EEEEe
Confidence            65544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.75  E-value=2.5e-17  Score=178.00  Aligned_cols=195  Identities=13%  Similarity=0.176  Sum_probs=150.6

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      ....|.|.+++..|.|.|+|.|.|..+.       ..+.+.+.    .+| +...+....+.+|+.+.|.|.+ .+.|.+
T Consensus        46 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~s-------~~~~l~v~----~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~  113 (262)
T 3rjd_A           46 STPSYRITSASVNDSGEYRCQRGLSGRS-------DPIQLEIH----RGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVY  113 (262)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEESSSCCC-------CCEEEEEE----CSS-EEEEESCSEEETTSCEEEEEEEGGGCCCE
T ss_pred             cCCeEEEecCCcccCeEEEEEEecCCcc-------ccEEEEEe----ccc-eEecCCCeEEecCCeEEEEEEccCCCCCc
Confidence            3578999999999999999999875432       33555554    223 3445566778899999999999 778888


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeecc---CCccccCCCCCCCeE
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA---PPTIRLPKQYEDGLL  559 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~---~p~~~~~~~~~~~~~  559 (1101)
                      .+.|++++..+...      ..  ...|.|.++...|.|.|+|.|.|..+.......|.|..   +|.+...+    ...
T Consensus       114 ~v~W~~~g~~~~~~------~~--~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~  181 (262)
T 3rjd_A          114 NVLYYRNGKAFKFF------HW--NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV----TSP  181 (262)
T ss_dssp             EEEEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS----CSS
T ss_pred             eEEEEECCcccccc------CC--CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC----cee
Confidence            99999999877422      11  23799999999999999999999987777777888875   34443333    235


Q ss_pred             EeeCCEEEEEEEEeecCC-Ce----eEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         560 FEMGEIIKLKVSMAGMPP-PT----ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~p~-~~----v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      +..|+.+.|.|.+.+.|. +.    +.|++++..+..        ......|.|.++...|.|.|+|.|.|..|..
T Consensus       182 ~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG--------RNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE--------EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc--------cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            778999999999999875 53    678888876542        1235689999999999999999999999975

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.75  E-value=1.2e-17  Score=183.67  Aligned_cols=247  Identities=13%  Similarity=0.052  Sum_probs=166.9

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|.+|.++.+...+.+++.|+|++|.                                                  +++
T Consensus        19 ~~p~~P~~l~~~~~~~~sv~l~W~~p~--------------------------------------------------~~~   48 (290)
T 3r8q_A           19 PAIPAPTDLKFTQVTPTSLSAQWTPPN--------------------------------------------------VQL   48 (290)
T ss_dssp             -CCCCCEEEEEEEECSSCEEEEEECCS--------------------------------------------------SCC
T ss_pred             CCCCCCCceEEEECCCCEEEEEEeCCC--------------------------------------------------CCe
Confidence            456778888888788888888887651                                                  247


Q ss_pred             ceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--
Q psy8139         720 LGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--  796 (1101)
Q Consensus       720 ~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--  796 (1101)
                      .+|.|+|+..+. ..|..... ..+.++++|.+|.|++.|.|+|.|.|..|.|+++.   ....+ ...| .+|.++.  
T Consensus        49 ~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~---~~~~t-~~~~-~~P~~l~~~  122 (290)
T 3r8q_A           49 TGYRVRVTPKEKTGPMKEINL-APDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ---GVVTT-LENV-SPPRRARVT  122 (290)
T ss_dssp             CEEEEEEEESSSSSCCEEEEE-CTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE---EEEEC-CCCC-CCCEEEEEE
T ss_pred             eEEEEEEEeCCCCCceEEEEc-CCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc---eeEec-CCCC-CCCceeEEE
Confidence            788888877653 34554433 25678999999999999999999999999987752   22222 1233 4555554  


Q ss_pred             cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCC
Q psy8139         797 ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDN  876 (1101)
Q Consensus       797 ~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l  876 (1101)
                      ...++++.+.|.++               ++++.            .|.|.|+..+....+ ...+.     .......+
T Consensus       123 ~~~~~sv~l~W~~p---------------~~~~~------------~Y~v~~~~~~~~~~~-~~~~~-----~~~~~~~i  169 (290)
T 3r8q_A          123 DATETTITISWRTK---------------TETIT------------GFQVDAVPANGQTPI-QRTIK-----PDVRSYTI  169 (290)
T ss_dssp             EECSSCEEEEEECC---------------SCCCC------------EEEEEEEESSSCCCE-EEEEC-----TTCSEEEE
T ss_pred             EcCCCeEEEEEeCC---------------CCccc------------EEEEEEEECCCCcce-EEecC-----CCccEEEE
Confidence            45667788889774               13445            889988776633322 22221     12222334


Q ss_pred             CCccCcccce--eeccccccc--CceeecccCCCCccCCCCCChhhhhhhhhhhccccccccccchhhcccccchhhhhh
Q psy8139         877 ENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYEN  952 (1101)
Q Consensus       877 ~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~vp~~~~nG~i~gY~I~~~~~~y~~  952 (1101)
                      .+|.+.+.|.  |+|.|..|.  +..+...+.    ..+|.++.+...  +.+++.|-+..+.|.|.+|.|     +|..
T Consensus       170 ~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~----p~~P~~l~~~~~--~~~sv~l~W~~p~~~~~~Y~v-----~~~~  238 (290)
T 3r8q_A          170 TGLQPGTDYKIYLYTLNDNARSSPVVIDASTA----IDAPSNLRFLAT--TPNSLLVSWQPPRARITGYII-----KYEK  238 (290)
T ss_dssp             CSCCTTCEEEEEEEEEETTEECCCEEEEEECC----CCCCEEEEEEEE--ETTEEEEEEECCSSCCCEEEE-----EEEC
T ss_pred             CCCCCCCEEEEEEEEEeCCcccCCEEEEecCC----CCCCCccEEEee--CCCEEEEEEeCCCCcccEEEE-----EEEe
Confidence            4455999999  999999988  433444432    357789998877  556666643334479999999     8887


Q ss_pred             cccccccccccccCCceeEeecCCCCCCCceeec
Q psy8139         953 LGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       953 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      .++...............++|.+|.+|+.|.|+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  272 (290)
T 3r8q_A          239 PGSPPREVVPRPRPGVTEATITGLEPGTEYTIYV  272 (290)
T ss_dssp             TTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCcceeEeccCCCccEEEECCCCCCCEEEEEE
Confidence            7665444333334566789999999999999988

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.75  E-value=5.5e-17  Score=178.25  Aligned_cols=223  Identities=11%  Similarity=0.024  Sum_probs=148.5

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCc--eeEEccCCeEEEEEEEeccCCCe
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH--DTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~--~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ..|.|.++++.|+|.|+|.|.|..|....  .+..+.+.+.  .+..|.+...+.  .+.+.+|+++.|.|.+. .|.+.
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~--~~~~~~v~v~--~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~  125 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETD--ERKRLYIFVP--DPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLV  125 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------C--CCEEEEEECC--CTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSC
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcC--cEEeEEEEEE--CCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCce
Confidence            67999999999999999999998875321  1233444432  122233222222  26789999999999998 67788


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeecc--CCccccCCCCCCCeEE
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA--PPTIRLPKQYEDGLLF  560 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~--~p~~~~~~~~~~~~~v  560 (1101)
                      ++|++.+.......  ... ...  .+.    ...|+|.|+|.|.|..+...+ ...|.|..  +|.+...+.   ...+
T Consensus       126 v~w~~~~~~~~~~~--~~~-~~~--~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~---~~~v  193 (289)
T 3mjg_X          126 VTLHEKKGDVALPV--PYD-HQR--GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAV---QTVV  193 (289)
T ss_dssp             EEEEESSCCSCCCC--CEE-TTT--EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEES---CSEE
T ss_pred             EEEEeCCCCCccce--eec-CCc--Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCC---ccee
Confidence            99988652111110  001 111  111    357999999999987765544 34566654  454443332   2468


Q ss_pred             eeCCEEEEEEEEeecCCCeeEEEECCeecCCCCce-EEEe----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-EITH----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       561 ~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ..|+.+.|.|.+.+.|.+.+.|++++......... ....    .....+|.|.++...|.|.|+|.|.|..|....++.
T Consensus       194 ~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  273 (289)
T 3mjg_X          194 RQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA  273 (289)
T ss_dssp             ETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEE
T ss_pred             EcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEE
Confidence            89999999999999999999999877654322111 1111    123578999999999999999999999999999999


Q ss_pred             EEEecCCCCC
Q psy8139         636 VTVTDRPLPP  645 (1101)
Q Consensus       636 l~v~~~P~~P  645 (1101)
                      |.+...|...
T Consensus       274 l~v~~~~~~~  283 (289)
T 3mjg_X          274 INITVVESGH  283 (289)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEEecCc
Confidence            9998777554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.75  E-value=5e-17  Score=169.37  Aligned_cols=173  Identities=21%  Similarity=0.288  Sum_probs=145.0

Q ss_pred             ccCCeEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         465 LEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      ..++.+.|.|.+.+. |.+.+.|+++|..+....++.+...++...|.|.++...|+|.|+|.|.|..|.......|.|.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367788999999884 5889999999999988888888777877789999999999999999999988887777777665


Q ss_pred             c--------------------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee-cc
Q psy8139         544 A--------------------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DR  602 (1101)
Q Consensus       544 ~--------------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~  602 (1101)
                      .                    .|.+..  ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+... +.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  172 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLG--GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEE--BCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTT
T ss_pred             eccchhhhccccCcccccccCCCcccc--cCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCC
Confidence            2                    222211  112345788899999999999999999999999999988777777655 55


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      ...|.|.++...|.|.|+|.|.|..|.......|.|.
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            6799999999999999999999999998888888876

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.75  E-value=3.6e-17  Score=165.94  Aligned_cols=175  Identities=18%  Similarity=0.275  Sum_probs=140.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCC--eeEEEEeecCCCCCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~--~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +|.|...|.++.+..|+++.|.|.+.+.|.+.+.|++++..+.......+...+.  ...|.|.++...|+|.|+|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            4567777888999999999999999999999999999999887665554444332  35899999999999999999999


Q ss_pred             CCCce-EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEE
Q psy8139         530 RAGHS-ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       530 ~~g~~-~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                      ..|.. .....|.|..+|.+...+.   ...+..|+.+.|.|.+.+.|.| .+.|++++..+.....       ....|.
T Consensus        82 ~~~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~  151 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVPFFTVEPK---DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLN  151 (182)
T ss_dssp             CTTCEECCCEEEEEECSCEEEECCC---CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEE
T ss_pred             CCCcEEEEEEEEEEecCCeEEecCc---ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEE
Confidence            87754 3468899999888766544   3578899999999999999999 9999999988864321       367899


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCcee-EEEEEE
Q psy8139         608 ISDARRADRGEYQAHGVNSLGEDVA-SFLVTV  638 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v  638 (1101)
                      |.++.  |.|.|+|.|.|..|.... +..|.|
T Consensus       152 i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          152 VTGVT--QSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             Eeccc--cCeEEEEEEECCCCCcccceEEEEe
Confidence            99884  789999999999997743 666665

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.75  E-value=3.9e-18  Score=175.61  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=128.7

Q ss_pred             eeEEccCCeEEEEEE---EeccCCCeEEEEECCEEee-----------------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         461 DTTALEDEKVEFTVQ---VEGIPTPKVSWYKDGFEIF-----------------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~---~~g~p~~~v~W~~~g~~~~-----------------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      ++++..|+.++|.|.   +.+.|.+.|+|+++|....                 ....+.+....+...|.|.++...|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467889999999995   4678999999999753111                 11334455566677999999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecC----CCCceE
Q psy8139         521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT----SGGRYE  596 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~----~~~~~~  596 (1101)
                      |.|+|.|.|..|.....+.|.|..||.+...+.   ...+..|+++.|.|.+.|.|.|.+.|.+++..+.    ...++.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~---~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~  158 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE---RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM  158 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEE---ECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecce---eEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEE
Confidence            999999999999998899999988887765443   2246679999999999999999999988765442    234455


Q ss_pred             EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       597 ~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      +..++.-..+.+.++.+.|.|.|+|.|.|..|....
T Consensus       159 ~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          159 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            554444455677899999999999999999998654

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.75  E-value=1.5e-18  Score=190.97  Aligned_cols=251  Identities=11%  Similarity=0.040  Sum_probs=170.7

Q ss_pred             CCCCCCcccCC----CCCCCCceEEEEeeCC-CCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         685 GPPGKPQLLPD----SPSLDRDVFTIRWEPP-EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       685 ~~p~~p~~~~~----~~~~~~~si~l~W~pP-~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                      ++|+.|+.+..    ....+.+++.|+|+|| ..+++++|.+|.|.|...+...+ .     ...+...+.+|.|++.|.
T Consensus         2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~-~-----~~~~~~~~~~l~p~t~Y~   75 (290)
T 3l5i_A            2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-N-----YTVNATKLTVNLTNDRYL   75 (290)
T ss_dssp             CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE-E-----EEESSSEEEEEECSSCEE
T ss_pred             CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCce-e-----EecCCcEEEEEcCCceEE
Confidence            45666665432    2345679999999983 44567889999999998776432 1     122334678899999999


Q ss_pred             EEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhh
Q psy8139         760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLML  838 (1101)
Q Consensus       760 ~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  838 (1101)
                      |+|.|.|..|.|+++   ...+......|+.||.++. ...++++.+.|.++..               ++.        
T Consensus        76 ~~V~A~n~~G~s~~s---~~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~---------------~i~--------  129 (290)
T 3l5i_A           76 ATLTVRNLVGKSDAA---VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE---------------SVK--------  129 (290)
T ss_dssp             EEEEEEESSCBCCCE---EEEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSS---------------CCC--------
T ss_pred             EEEEEEcCCCCCCCc---eEEeecccccCCCccceeEEEeCCCeEEEEEeCCCC---------------CCC--------
Confidence            999999999997664   3333332224666776665 3334577788977532               344        


Q ss_pred             hceeeEEeeeeccCCCCC----Cceeeee-ccccccCCCCCCCCCccCcccce--eeccccccc--CceeecccCCCCcc
Q psy8139         839 FTFIETISSFRDKYVDNE----DDYDIVE-TNEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDR  909 (1101)
Q Consensus       839 ~~~~~Y~v~~r~~~~~~~----~~~~~v~-~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~  909 (1101)
                          .|.|.|+.......    |...... ...+.       +.+|.+++.|.  |+|.|..|.  +..+..+|.+++|.
T Consensus       130 ----~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~L~p~t~Y~~~V~A~n~~g~g~~~~~~~~t~~~~P~  198 (290)
T 3l5i_A          130 ----KYILEWCVLSDKAPCITDWQQEDGTVHRTYL-------RGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPS  198 (290)
T ss_dssp             ----EEEEEEEEECSSSCCCCEEEEEETTCSEEEC-------CSCCCTTCEEEEEEEEEETTEECCCEEEEEESSCCCCS
T ss_pred             ----cEEEEEEECCCCCCCCcCeEEccCCCcceEE-------ecCcCCccEEEEEEEEEeCCcccccEEEEeEccccCCC
Confidence                88898887664432    3332111 12223       34555999999  999999997  66778889999998


Q ss_pred             CCCCCChhhhhhhhhhhccc---cccccccchhhcccccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec
Q psy8139         910 HYPTLDEEEEEEDRESLVKD---RESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       910 ~~P~~v~~~~~~~n~t~v~v---p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      .+| ++.+...++++..|.|   |+...||.|.||+|     +|+..++... ...+ ......++|.+|.+++.|.|+.
T Consensus       199 ~~p-~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v-----~~~~~~~~~~-~~~~-~~~~~~~~~~~L~p~t~Y~~~V  270 (290)
T 3l5i_A          199 KGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI-----FYRTIIGNET-AVNV-DSSHTEYTLSSLTSDTLYMVRM  270 (290)
T ss_dssp             SCC-CEEEEEECSSCEEEEECCCCHHHHSSCCCEEEE-----EEEETTSCCE-EEEE-ETTCSEEEECSCCTTCEEEEEE
T ss_pred             CCC-eeeEeeccCCEEEEEEcCCChhccCCEEEEEEE-----EEEeCCCCeE-EEEe-CCCceEEEeCCCCCCCEEEEEE
Confidence            888 6666666334444555   35578999999999     8877655432 1112 3455689999999999999998

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=184.37  Aligned_cols=219  Identities=14%  Similarity=0.179  Sum_probs=150.7

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC-CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP-AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~-~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|...     ..+.+.+...+ ...|.+...+....+..|+.+.|.|.+.|.|.+.+
T Consensus        62 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-----~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i  136 (305)
T 2nzi_A           62 HQLIIASVTDDDATVYQVRATNQGGSVS-----GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI  136 (305)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEEE-----EEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred             EEEEEccCChhhCeEEEEEEEcCCCCcc-----ceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEE
Confidence            4799999999999999999999887532     22444443111 11222233345678889999999999999999999


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEee-cCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeC
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQ-AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMG  563 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~-l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g  563 (1101)
                      .|++++..+....++.+...+....|.|.+ +...|.|.|+|.|.|..|....+..|.|..+|..+....    +....+
T Consensus       137 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~----~~~~~~  212 (305)
T 2nzi_A          137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK----VSDVSR  212 (305)
T ss_dssp             EEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE----EESCCS
T ss_pred             EEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce----eeeccC
Confidence            999999888777777777777777999999 999999999999999999998889999987664321110    011134


Q ss_pred             CEEEEEEEEeecC--CCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         564 EIIKLKVSMAGMP--PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       564 ~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ..+.|.|......  .+.+.+.....+... ..+..........+.|.+|.+++.|.|+|.|.|..|.+..+.
T Consensus       213 ~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~  284 (305)
T 2nzi_A          213 DSVNLTWTEPASDGGSKITNYIVEKCATTA-ERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE  284 (305)
T ss_dssp             SCEEEEEECCSCCSBSCEEEEEEEEEETTS-CCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred             CEEEEEEcCCccCCCCceeEEEEEEecCCC-CccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence            4455555532111  111111111111111 122222222256799999999999999999999999876543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.75  E-value=2.9e-17  Score=173.66  Aligned_cols=197  Identities=21%  Similarity=0.319  Sum_probs=148.6

Q ss_pred             CCCeeeecC----ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEE-EEecCCeeEEEEeecCCCCCEEEEE
Q psy8139         451 AAPSFIRAL----HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       451 ~~P~~~~~p----~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      .+|.|...+    ....+..|+++.|.|.+.+.|.+.+.|++++..+.....+. .....+...|.|.++...|+|.|+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            456665555    67889999999999999999999999999999886543321 0112233489999999999999999


Q ss_pred             EEEeCCCceEEEEEEeeccCCccc--cCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEE----CCeecCCCCceEE--
Q psy8139         526 TATNRAGHSITKARLRLEAPPTIR--LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH----NGEPLTSGGRYEI--  597 (1101)
Q Consensus       526 ~a~n~~g~~~~s~~l~V~~~p~~~--~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~----~g~~l~~~~~~~~--  597 (1101)
                      .+.|..|.......|.|..++...  ..........+..|..+.|.|.+.+.|.+.+.|++    +|..+..+.....  
T Consensus        94 ~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  173 (231)
T 3ojm_B           94 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV  173 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEE
T ss_pred             EEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeE
Confidence            999999988888888887643221  11112345678889999999999999999999999    7776654332111  


Q ss_pred             Ee-----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCc
Q psy8139         598 TH-----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK  647 (1101)
Q Consensus       598 ~~-----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~  647 (1101)
                      ..     .....+|.|.++...|.|.|+|.|.|..|....+..+.|..+|.+|..
T Consensus       174 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          174 LKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             EEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             ecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            11     112457999999999999999999999999999999999999888854

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.74  E-value=6.1e-17  Score=165.65  Aligned_cols=181  Identities=23%  Similarity=0.312  Sum_probs=143.8

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEE-CCEEee-cCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYK-DGFEIF-SSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~-~g~~~~-~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ++.+...|.+..+..|++++|.|.+.+.| .+.+.|++ +|..+. ...++.+.. ......|.|.++...|+|.|+|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            34566778888999999999999999977 78999999 887776 344555443 256679999999999999999999


Q ss_pred             EeCCC-ceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC--CceEEEeecceE
Q psy8139         528 TNRAG-HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYL  604 (1101)
Q Consensus       528 ~n~~g-~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~  604 (1101)
                      .|..| .......|.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+.+.|++++..+...  .++....   ++
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~  155 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS---NN  155 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCS---SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT---TS
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCC---cEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec---CC
Confidence            99984 455567888888887765543   346788999999999999999999999999988532  3343332   34


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      +|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            7999999999999999999999876655555444

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.74  E-value=1.1e-15  Score=177.08  Aligned_cols=437  Identities=11%  Similarity=0.029  Sum_probs=244.4

Q ss_pred             CCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecC
Q psy8139         350 KPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVV  429 (1101)
Q Consensus       350 ~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~  429 (1101)
                      .|..+.|. .-+-.....+|.+|..  .+.-..|.+..... +....+     ...+.+.|..+.++|. .++..-..  
T Consensus         6 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~--   73 (488)
T 2q7n_A            6 DDKDLKCT-TNNMRVWDCTWPAPLG--VSPGTVKDICIKDR-FHSCHP-----LETTNVKIPALSPGDH-EVTINYLN--   73 (488)
T ss_dssp             ---CCCCE-ESSSSEEEEECCCCSS--SCCSCEEEEEEESS-SEEEEE-----CSSSEEEEECCCSSCE-EEEEEESS--
T ss_pred             CCccceeE-ecCceEEEEeeeCcCc--cCCCceEEEEEecC-CceeEE-----eccceeEcccCCCCcc-eEEEeecc--
Confidence            46677777 6667889999999943  33445677765431 111121     3456899999999994 66665222  


Q ss_pred             CCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEc---cCCeEEEEEEEeccC--CC-eEEEEEC----CE--EeecCC
Q psy8139         430 GFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL---EDEKVEFTVQVEGIP--TP-KVSWYKD----GF--EIFSSR  497 (1101)
Q Consensus       430 G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~---~g~~v~L~C~~~g~p--~~-~v~W~~~----g~--~~~~~~  497 (1101)
                      +.        .....+......  .+...|..+.+.   .-..+.|.+...+..  .. .+.|.-.    ..  .+.. .
T Consensus        74 ~~--------~~~~~~~~~~~~--~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~-~  142 (488)
T 2q7n_A           74 GF--------QSKFTLNEKDVS--LIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVAL-V  142 (488)
T ss_dssp             SC--------EEEEEECSTTCE--ECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCC-E
T ss_pred             Cc--------eeEEEEecCccc--cCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEE-E
Confidence            11        112222111110  012233333222   224455555444332  11 2444311    00  0000 0


Q ss_pred             cEEEEecCC--eeEEEEeecCCC--CCEEEEEEEEe----CCCce---EEE--EEEeeccCCccccCCCCCCCeEEeeCC
Q psy8139         498 RQRIVTDND--ISTLIIHQAALM--DEGEIKCTATN----RAGHS---ITK--ARLRLEAPPTIRLPKQYEDGLLFEMGE  564 (1101)
Q Consensus       498 ~~~~~~~~~--~~~l~I~~l~~~--d~g~Y~C~a~n----~~g~~---~~s--~~l~V~~~p~~~~~~~~~~~~~v~~g~  564 (1101)
                      .+.....+.  ...-......+.  ..+..+.+...    ..|..   ..+  -.+.+..+..+...|.   ...+..|+
T Consensus       143 ~~~~~~~~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~t~i~v~P~---~~~v~~Gs  219 (488)
T 2q7n_A          143 LLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQ---DKVVLAGS  219 (488)
T ss_dssp             ECCEECSSSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCCCCSSCCEECT---TCEEESSC
T ss_pred             EEEEEecCCCceeEeeccCCCcccccceEEEEEEEeccccccCCCCCcCCCChhhcCCcCCCceEECCC---CCEEcCCC
Confidence            000000111  111222222222  24455555543    11221   112  2334444444444443   33688999


Q ss_pred             EEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCC
Q psy8139         565 IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP  644 (1101)
Q Consensus       565 ~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~  644 (1101)
                      +++|.|.+.   .+.+.|.++|..+...   .  ..+....|+|.++...+.|.|.|.+.+  +.....+.+.+..+|++
T Consensus       220 ~vtl~C~a~---~~~I~W~~ng~~i~~~---r--i~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~v~~pP~~  289 (488)
T 2q7n_A          220 NMTICCMSP---TKVLSGQIGNTLRPLI---H--LYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVFAGYPPDV  289 (488)
T ss_dssp             CCEEEECCS---SCEEEEEETTEECCCE---E--CSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEEEECCCCC
T ss_pred             CEEEEEECC---CCEEEEEECCEECchh---h--ccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEEeeCCCCC
Confidence            999999988   4699999999887643   1  244577899999999988888887763  33344778888899999


Q ss_pred             CCccEEEEecCCeEEEEeecCCCC--CCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceE
Q psy8139         645 PGKAKVVMTLGKSVTLSWSEPEDD--GGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  722 (1101)
Q Consensus       645 P~~~~~~~~~~~sv~lsW~~p~~~--~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y  722 (1101)
                      |.++.+......+++++|.++.+.  +|.+++.|.|.|                                          
T Consensus       290 P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y------------------------------------------  327 (488)
T 2q7n_A          290 PQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFE------------------------------------------  327 (488)
T ss_dssp             CCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEE------------------------------------------
T ss_pred             CcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEE------------------------------------------
Confidence            999998887888999999977654  234455555555                                          


Q ss_pred             EEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--ccc
Q psy8139         723 LVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALH  799 (1101)
Q Consensus       723 ~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~  799 (1101)
                          +..+.. .|.......+....+++..+..++.|.|+|.|.|..|.++ |   ..........++.||.++.  ...
T Consensus       328 ----~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S---~~~~~~~~~v~P~PP~nl~v~~~s  399 (488)
T 2q7n_A          328 ----SISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S---AVVINVTERVAPHDPTSLKVKDIN  399 (488)
T ss_dssp             ----TTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E---EEECCGGGTBCCCCCEEEEEEECS
T ss_pred             ----EECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c---eEEEEecCCCCCCCCeEEEEEecC
Confidence                322110 1111111113345667754444699999999999999843 3   2222233456788888876  345


Q ss_pred             ccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCc-eeeee---cccc--ccCCCC
Q psy8139         800 DTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDD-YDIVE---TNEH--TGTGAP  873 (1101)
Q Consensus       800 ~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~-~~~v~---~~~~--~~~~~~  873 (1101)
                      ++...+.|.||.            ..++.++            .|.|.|+..+. ..|. ...+.   ...+  .+.+|.
T Consensus       400 ~~sl~LsW~pP~------------~~~g~~l------------~YeV~Yr~~~~-~~w~~~~~~~~~~~~~~~v~l~~L~  454 (488)
T 2q7n_A          400 STVVTFSWYLPG------------NFTKINL------------LCQIEICKANS-KKEVRNATIRGAEDSTYHVAVDKLN  454 (488)
T ss_dssp             TTCEEEEEEEEE------------ECSSSEE------------EEEEEEBCTTS-CCEEEEEEEECCEEEEEEEEECSCC
T ss_pred             CCEEEEEEeCCC------------CCCCcce------------EEEEEEEECCC-CCceEEEEEecCCCcEEEEEeCCCC
Confidence            667888897742            2234556            99999998753 3453 22221   1223  445555


Q ss_pred             CCCCCccCcccce--eeccccccc------CceeecccCC
Q psy8139         874 SDNENESDYFPEK--TIDESVYGY------DTIVYGYDSD  905 (1101)
Q Consensus       874 ~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e  905 (1101)
                             +++.|+  |+|.| .|.      |..+...|.+
T Consensus       455 -------P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e  486 (488)
T 2q7n_A          455 -------PYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTE  486 (488)
T ss_dssp             -------SSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCC
T ss_pred             -------CCceEEEEEEEEE-CCCCCCCCCcCCEeEECCC
Confidence                   999999  99998 553      5555555544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.74  E-value=1.4e-16  Score=172.09  Aligned_cols=243  Identities=16%  Similarity=0.143  Sum_probs=177.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .|.+...|.+..+.+|+++.|.|.+.+.|.+ .+.|+++|..+...          ...|.|.++...|+|.|+|.+.|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecC
Confidence            3667778888899999999999999999888 99999999887542          237999999999999999999886


Q ss_pred             CCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                      .+..  ...|.|..++....++    ...+..|+.+.|.|.+ .+.|.+.+.|+++|..+..        ......|.|.
T Consensus        71 ~~s~--~~~l~v~~~~~~~~~~----~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~--------~~~~~~l~i~  136 (262)
T 3rjd_A           71 GRSD--PIQLEIHRGWLLLQVS----SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF--------FHWNSNLTIL  136 (262)
T ss_dssp             CCCC--CEEEEEECSSEEEEES----CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEES
T ss_pred             Cccc--cEEEEEeccceEecCC----CeEEecCCeEEEEEEccCCCCCceEEEEECCccccc--------cCCCCeEEEE
Confidence            6543  4566776655433222    2367789999999999 6778899999999877642        1225679999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCc---cEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCC
Q psy8139         610 DARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK---AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP  686 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~---~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~  686 (1101)
                      ++...|.|.|+|.|.|..|..+....+.|...+.+|.-   .......+..+.|+|.....+..                
T Consensus       137 ~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~----------------  200 (262)
T 3rjd_A          137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR----------------  200 (262)
T ss_dssp             SCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----------------
T ss_pred             ECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCC----------------
Confidence            99999999999999999987777788888865444411   11123457788999986432110                


Q ss_pred             CCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEc
Q psy8139         687 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  766 (1101)
Q Consensus       687 p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n  766 (1101)
                                   ....+.+.|...    +..+                  . .......++|.++.+.....|.|.|.|
T Consensus       201 -------------p~~~~~~~w~~~----~~~~------------------~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n  244 (262)
T 3rjd_A          201 -------------PGLQLYFSFYMG----SKTL------------------R-GRNTSSEYQILTARREDSGLYWCEAAT  244 (262)
T ss_dssp             -----------------EEEEEEET----TEEE------------------E-EEESCCEEEESSCCGGGCEEEEEEEEE
T ss_pred             -------------CCccEEEEEEeC----CcEe------------------c-ccCCCceEEEEEechhhCeEEEEEEEc
Confidence                         011234455431    1101                  0 002445789999999999999999999


Q ss_pred             CCcc
Q psy8139         767 VVGF  770 (1101)
Q Consensus       767 ~~G~  770 (1101)
                      ..|.
T Consensus       245 ~~G~  248 (262)
T 3rjd_A          245 EDGN  248 (262)
T ss_dssp             TTSS
T ss_pred             ccCc
Confidence            9995

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=2.3e-18  Score=193.69  Aligned_cols=266  Identities=21%  Similarity=0.294  Sum_probs=116.7

Q ss_pred             cCceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .|.+..+.+|+++.|.|.+.+. |.+.+.|+++|..+....++.+    ....|.|.++...|+|.|+|.|.|. |....
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~   88 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEE
Confidence            4778889999999999999887 6789999999988866554443    1248999999999999999999998 76666


Q ss_pred             EEEEeeccCCc----------------------cccCCCC-CCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC
Q psy8139         537 KARLRLEAPPT----------------------IRLPKQY-EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG  593 (1101)
Q Consensus       537 s~~l~V~~~p~----------------------~~~~~~~-~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~  593 (1101)
                      ...|.|..+|.                      +..+... .....+..|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~  168 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH  168 (334)
T ss_dssp             ------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS
T ss_pred             EEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc
Confidence            67777765432                      2222111 123567889999999999999999999999998886543


Q ss_pred             ce-EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC-CCCC-----ccEEEEecCCeEEEEeecCC
Q psy8139         594 RY-EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPG-----KAKVVMTLGKSVTLSWSEPE  666 (1101)
Q Consensus       594 ~~-~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P-~~P~-----~~~~~~~~~~sv~lsW~~p~  666 (1101)
                      .+ .........+|.|.++...|.|.|+|.|.|..|.......+.|...+ .+|.     ........+..+.|.|...+
T Consensus       169 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g  248 (334)
T 1ry7_B          169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS  248 (334)
T ss_dssp             STTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBC
T ss_pred             cccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEec
Confidence            32 12223346689999999999999999999999988888888887643 2221     11234456778899888532


Q ss_pred             CCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeec------cc
Q psy8139         667 DDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS------PH  740 (1101)
Q Consensus       667 ~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~------~~  740 (1101)
                      .                                  ....+.|......+|..+..        ++.......      ..
T Consensus       249 ~----------------------------------p~p~v~W~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~  286 (334)
T 1ry7_B          249 D----------------------------------AQPHIQWLKHVEVNGSKVGP--------DGTPYVTVLKTAGANTT  286 (334)
T ss_dssp             S----------------------------------SCEEEEEEECCCGGGCSBCT--------TSSBCCCCCCCSSCSCS
T ss_pred             C----------------------------------CCCeEEEEECCcCCCccccC--------CCCeeEEEeecCccccc
Confidence            1                                  12356775421111211100        000000000      00


Q ss_pred             ccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         741 MVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       741 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      ......++|.++.......|.|.|.|..|.
T Consensus       287 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  316 (334)
T 1ry7_B          287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGF  316 (334)
T ss_dssp             CTTCCCEEECSCCTTSCSEEEEEEEESSCC
T ss_pred             cccccEEEEccCCHHHCEEEEEEEeCCCCe
Confidence            122347899999999999999999999996

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.74  E-value=3.6e-17  Score=174.39  Aligned_cols=197  Identities=21%  Similarity=0.353  Sum_probs=143.1

Q ss_pred             CCCeeeec----CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEE
Q psy8139         451 AAPSFIRA----LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       451 ~~P~~~~~----p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      .+|.|...    +..+.+.+|+++.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++...|+|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            45666533    34788999999999999999999999999999988654322 11112233489999999999999999


Q ss_pred             EEEeCCCceEEEEEEeeccCCcc--ccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEE----CCeecCCCCceEEE-
Q psy8139         526 TATNRAGHSITKARLRLEAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH----NGEPLTSGGRYEIT-  598 (1101)
Q Consensus       526 ~a~n~~g~~~~s~~l~V~~~p~~--~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~----~g~~l~~~~~~~~~-  598 (1101)
                      .+.|..|.......|.|...+..  ...........+..|..+.|.|.+.+.|.+.+.|++    +|..+..+...... 
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  169 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV  169 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeee
Confidence            99999998888888888653211  111111234567789999999999999999999999    78777544322111 


Q ss_pred             -------eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCc
Q psy8139         599 -------HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK  647 (1101)
Q Consensus       599 -------~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~  647 (1101)
                             .......|.|.++...|.|.|+|.|.|..|....+..|.|..+|.+|..
T Consensus       170 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             EEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred             eeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence                   1123568999999999999999999999999999999999988877744

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.74  E-value=1.8e-17  Score=181.52  Aligned_cols=249  Identities=13%  Similarity=0.018  Sum_probs=165.5

Q ss_pred             EEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCC
Q psy8139         634 FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY  713 (1101)
Q Consensus       634 ~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~  713 (1101)
                      ..+....+|.+|.++.+...+.+++.|+|++|.                                               
T Consensus         7 ~~~~~~~~p~~P~~l~~~~~~~~sv~l~W~~~~-----------------------------------------------   39 (283)
T 1tdq_A            7 GGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPR-----------------------------------------------   39 (283)
T ss_dssp             -----CCSSCCCEEEEEEEECSSCEEEEEECCS-----------------------------------------------
T ss_pred             cccccccCCCCCcEEEEEecCCCeEEEEEECCC-----------------------------------------------
Confidence            344556788999999888888888888888653                                               


Q ss_pred             CCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCC
Q psy8139         714 DGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  792 (1101)
Q Consensus       714 ~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p  792 (1101)
                         +++.+|.|.|+.... ..|..... ....++++|.+|.|++.|.|+|.|.|..|.|.+   ... ...   .++.+|
T Consensus        40 ---~~~~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~-~~~---t~p~~P  108 (283)
T 1tdq_A           40 ---AKVDFILLKYGLVGGEGGKTTFRL-QPPLSQYSVQALRPGSRYEVSISAVRGTNESDA---SST-QFT---TEIDAP  108 (283)
T ss_dssp             ---SCCSEEEEEEEESSSSCCCEEEEE-CTTCSEEEECSCCTTCEEEEEEEEEETTEECCC---EEE-EEE---CCCCCC
T ss_pred             ---CceeEEEEEEEEecCCCCcEEEEe-CCCCCEEEecCCCCCCEEEEEEEEECCCCCCCC---eeE-EEE---CCCCCC
Confidence               236778888765432 34433322 367889999999999999999999999998653   222 222   345555


Q ss_pred             cccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeee-----cc
Q psy8139         793 SFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVE-----TN  865 (1101)
Q Consensus       793 ~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~-----~~  865 (1101)
                      .++.  ...++++.+.|.++.               +++.            .|.|.|+..+. ..|....+.     ..
T Consensus       109 ~~l~~~~~~~~sv~l~W~~p~---------------~~i~------------~Y~v~~~~~~~-~~~~~~~~~~~~~~~~  160 (283)
T 1tdq_A          109 KNLRVGSRTATSLDLEWDNSE---------------AEAQ------------EYKVVYSTLAG-EQYHEVLVPKGIGPTT  160 (283)
T ss_dssp             EEEEEEEECSSCEEEEEECCS---------------SCCS------------EEEEEEEETTC-CCCEEEEEECCSSSEE
T ss_pred             CceEEEecCCCeEEEEecCCC---------------CCcc------------EEEEEEEeCCC-CcceEEECCCCCcccc
Confidence            5554  456677888897743               2345            89998877653 334343332     22


Q ss_pred             ccccCCCCCCCCCccCcccce--eecccccccCceeecccCCCCccCCCCCChhhhhhhhhhhccccccccccchhhccc
Q psy8139         866 EHTGTGAPSDNENESDYFPEK--TIDESVYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKV  943 (1101)
Q Consensus       866 ~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~vp~~~~nG~i~gY~I  943 (1101)
                      .+.+.+|.       +++.|.  |+|.|..|.+......+...  ..+|.++.+...  +.++|.|-+..++|.|.+|.|
T Consensus       161 ~~~i~~L~-------p~t~Y~~~V~A~n~~g~s~~~~~~~~t~--~~~P~~l~~~~~--~~~sv~l~W~~p~~~i~~Y~v  229 (283)
T 1tdq_A          161 KTTLTDLV-------PGTEYGVGISAVMNSKQSIPATMNARTE--LDSPRDLMVTAS--SETSISLIWTKASGPIDHYRI  229 (283)
T ss_dssp             EEEECSCC-------TTCEEEEEEEEEETTEECCCEEEEEECC--CCCCEEEEEEEE--CSSCEEEEEECCCSCCSEEEE
T ss_pred             eEEEecCC-------CCCEEEEEEEEEeCCCCCcceEEEecCC--CCCCCccEEeEe--cCCEEEEEEeCCCCcccEEEE
Confidence            33444444       999999  99999998833332222222  237788998887  566666644445799999999


Q ss_pred             ccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec
Q psy8139         944 IKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       944 ~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                           +|...++... ...+ ......+.|.+|.+|+.|.|+.
T Consensus       230 -----~~~~~~~~~~-~~~~-~~~~~~~~i~~L~p~t~Y~~~V  265 (283)
T 1tdq_A          230 -----TFTPSSGISS-EVTV-PRDRTSYTLTDLEPGAEYIISI  265 (283)
T ss_dssp             -----EEECSSSCCE-EEEE-ESSCSEEEECCCCTTCCEEEEE
T ss_pred             -----EEEcCCCCee-EEEe-CCCccEEEECCCCCCCEEEEEE
Confidence                 8877665322 2222 2455689999999999999998

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.74  E-value=3.9e-17  Score=169.31  Aligned_cols=190  Identities=19%  Similarity=0.281  Sum_probs=135.2

Q ss_pred             EecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCC
Q psy8139         638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  717 (1101)
Q Consensus       638 v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~  717 (1101)
                      |.++|++|.++.+.. +.+++.|+|++|.                                               ++++
T Consensus         2 v~~~P~~P~~~~~~~-~~~sv~l~W~~p~-----------------------------------------------~~~~   33 (205)
T 1cfb_A            2 VQDVPNAPKLTGITC-QADKAEIHWEQQG-----------------------------------------------DNRS   33 (205)
T ss_dssp             CCCCCCCCEEEEEEE-CSSEEEEEEECCC-----------------------------------------------CTTS
T ss_pred             cccCCCCCCCcEEEe-cCCEEEEEEECcc-----------------------------------------------cCCC
Confidence            346777887777777 7777777777553                                               3345


Q ss_pred             CcceEEEEEEeCCC-CCceeec-ccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC-CCCcEEecCCCCCCCCCcc
Q psy8139         718 PVLGYLVEHRRTGS-PYWVRAS-PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP-LSEPLTVTYQRSPAAAPSF  794 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~-~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~-~s~~~t~~~~~~P~~~p~~  794 (1101)
                      +|.+|.|+|+.... ..|.... ......+.+.+ +|.|++.|.|+|.|.|..|.|++|. ...+.+..  ..|+.+|.+
T Consensus        34 ~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~--~~P~~~P~~  110 (205)
T 1cfb_A           34 PILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQP--DVPFKNPDN  110 (205)
T ss_dssp             CCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEEEETTEECCCCCCCCCEEECC--CCCSCCCSC
T ss_pred             ceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEEEECCccCCCCCCceeEEcCC--cCCCCCCee
Confidence            67888888876543 5675432 22245677787 9999999999999999999999884 34444433  667778877


Q ss_pred             cc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeec---ccccc
Q psy8139         795 IR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVET---NEHTG  869 (1101)
Q Consensus       795 ~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~---~~~~~  869 (1101)
                      +.  ....+++.+.|.||..          ...++++.            +|.|.|+..+....|....+..   ..+.+
T Consensus       111 ~~~~~~~~~sv~l~W~~p~~----------~~~ng~i~------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (205)
T 1cfb_A          111 VVGQGTEPNNLVISWTPMPE----------IEHNAPNF------------HYYVSWKRDIPAAAWENNNIFDWRQNNIVI  168 (205)
T ss_dssp             CEEECSSTTCEEEECCCCCG----------GGTCSSSC------------EEEEEEEESSTTCCCEEEEECCTTCCEEEE
T ss_pred             eEeecCCCCeEEEEEECCCc----------cccCCCce------------EEEEEEEECCCCCCcEEEEecCCCccEEEE
Confidence            65  4455678889987531          13556677            9999999888776687766532   34444


Q ss_pred             CCCCCCCCCccCcccce--eeccccccc----CceeecccCCCC
Q psy8139         870 TGAPSDNENESDYFPEK--TIDESVYGY----DTIVYGYDSDDL  907 (1101)
Q Consensus       870 ~~~~~~l~~~~~~t~Y~--V~a~n~~G~----~~~v~~~t~e~~  907 (1101)
                      .+|.       +++.|.  |+|.|..|.    +..+..+|+|++
T Consensus       169 ~~L~-------p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e~v  205 (205)
T 1cfb_A          169 ADQP-------TFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR  205 (205)
T ss_dssp             CSCC-------SSCEEEEEEEEEETTEECSSCCCCEEEESSSCC
T ss_pred             cCCC-------CCcEEEEEEEEEcCCCcCCCCCCcEEEecCCCC
Confidence            4444       999999  999999997    467888898874

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.74  E-value=1e-18  Score=197.09  Aligned_cols=222  Identities=17%  Similarity=0.190  Sum_probs=161.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEE-----Eecc
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-----VEGI  479 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~-----~~g~  479 (1101)
                      +..|.|.+++..|.|.|+|.|.|..|...     ..+.+.+...+...+  ........+..|+++.|.|.     +.|.
T Consensus        80 ~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~-----~~~~l~V~~~~~~~~--~~~~~~~~~~~g~~v~l~C~~~~~~~~g~  152 (339)
T 3o4o_C           80 DGALWLLPALQEDSGTYVCTTRNASYCDK-----MSIELRVFENTDAFL--PFISYPQILTLSTSGVLVCPDLSEFTRDK  152 (339)
T ss_dssp             TTEEEESSBCTTCCEEEECCEEETTEEEE-----EEEEEEEECSCGGGH--HHHCEEEEEETTSCEEEECCSCTTTCCSS
T ss_pred             CCeEEECCCCcccCEEEEEEEECCcceEE-----EEEEEEEEcCCCccc--cccccceEEECCCCEEEEecCCcccccCC
Confidence            46899999999999999999999877432     234455443221111  11222346889999999999     8899


Q ss_pred             CCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc----eEEEEEEeecc-----CCccc
Q psy8139         480 PTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH----SITKARLRLEA-----PPTIR  549 (1101)
Q Consensus       480 p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~----~~~s~~l~V~~-----~p~~~  549 (1101)
                      |.+.+.|+++|..+... .++....  +...|.|.++...|+|.|+|.|.|..|.    ....+.|.|..     +|.+.
T Consensus       153 p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~  230 (339)
T 3o4o_C          153 TDVKIQWYKDSLLLDKDNEKFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII  230 (339)
T ss_dssp             SCCCBCCEESSCBCCTTCSSEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEEC
T ss_pred             CCceEEEecCCeeCCCCCceeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEe
Confidence            99999999999887655 3443332  2248999999999999999999998874    44567777764     34444


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEE---eecC-CCeeEEEECCeecCCC---------CceEEEeecc---eEEEEEccCCC
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSM---AGMP-PPTARWLHNGEPLTSG---------GRYEITHTDR---YLNLRISDARR  613 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~---~g~p-~~~v~W~~~g~~l~~~---------~~~~~~~~~~---~~sl~i~~l~~  613 (1101)
                      .++   ....+..|+.+.|.|.+   .|.| .+.+.|+++|..+...         ..+.+...+.   ...|.|.++..
T Consensus       231 ~~~---~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~  307 (339)
T 3o4o_C          231 SPL---KTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTR  307 (339)
T ss_dssp             CCS---CCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCC
T ss_pred             cCC---ceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEech
Confidence            332   33467789999999999   8888 8999999998876421         2222222221   22799999999


Q ss_pred             CCC-eEEEEEEEeCCCCceeEEEEEE
Q psy8139         614 ADR-GEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       614 ~~~-y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|. |.|+|.|.|..|..+..+.+.+
T Consensus       308 ~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          308 EDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             hhcCccEEEEEEeccCceEEEEEhhH
Confidence            997 9999999999998776655443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.73  E-value=3.7e-17  Score=166.86  Aligned_cols=182  Identities=24%  Similarity=0.418  Sum_probs=141.7

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+..  ..++.....+   .|.|.++...|+|.|+|.+.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEEEE
Confidence            57778888889999999999999999999999999999887653  3344433222   799999999999999999999


Q ss_pred             CCCceE--EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEE
Q psy8139         530 RAGHSI--TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       530 ~~g~~~--~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                      ..+...  ....+.|..+|.+...+.. ....+..|..+.|.|.+.+.|.+.+.|+++|..+.....+.+.  .....|.
T Consensus        79 ~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~  155 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPPAISMPQKS-FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT  155 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECSCCE-EEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE--TTTTEEE
T ss_pred             cCCCceEEEEEEEEecCCCCccccccc-ccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe--cCCCEEE
Confidence            876543  3456777777766543321 1234567999999999999999999999999998876665543  3356899


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      |.++...|.|.|+|.|.|..|....+..+.|.
T Consensus       156 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999999999999999998888777764

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.73  E-value=7e-17  Score=186.86  Aligned_cols=294  Identities=8%  Similarity=-0.065  Sum_probs=138.6

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE----ecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV----TDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV  678 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v----~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v  678 (1101)
                      .+.++..+|.+...|.++|.|.| .|.+..+....+    ...++||. +.+.. ..+++.|+|. |...+|..      
T Consensus        64 ~~~~t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~-v~~~~-~~~si~v~w~-P~~~~g~~------  133 (414)
T 3se4_A           64 KCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEA-EDKAIVIHIS-PGTKDSVM------  133 (414)
T ss_dssp             CEECCSSCCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE-EEEEE-CSSCEEEEEE-CSSSSCTT------
T ss_pred             EEECCcccccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe-EEEEE-cCCEEEEEEE-cCCCCCce------
Confidence            34455567899999999999999 444433222111    12345554 55443 3457778887 54222200      


Q ss_pred             EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceE
Q psy8139         679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY  758 (1101)
Q Consensus       679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  758 (1101)
                                                   |.     .++.+.+|.|.|...++..+....   ...++++|.+|.|++.|
T Consensus       134 -----------------------------~~-----~~~~~~~Y~v~y~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y  176 (414)
T 3se4_A          134 -----------------------------WA-----LDGLSFTYSLVIWKNSSGVEERIE---NIYSRHKIYKLSPETTY  176 (414)
T ss_dssp             -----------------------------TG-----GGGSSCEEEEEEEETTTCCEEEEE---EECSEEEECCCCTTCEE
T ss_pred             -----------------------------ee-----eecCcEEEEEEEEECCCCceEEEe---cCCcEEEEcCCCCCCeE
Confidence                                         00     013578999999988776543322   45688999999999999


Q ss_pred             EEEEEEEcC--CccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhHHHHh
Q psy8139         759 QFRITAENV--VGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFML  835 (1101)
Q Consensus       759 ~~~V~A~n~--~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v  835 (1101)
                      .|+|.|.|.  .|.|++|+...+.+.  ++.|+.+|.++. ...+++.++.|.||.                ...     
T Consensus       177 ~~~V~A~n~~~~g~g~~S~~~~~~t~--~~~~~~~P~~v~~~~~~~~~~l~W~pp~----------------~~~-----  233 (414)
T 3se4_A          177 CLKVKAALLTSWKIGVYSPVHCIKTT--VENELPPPENIEVSVQNQNYVLKWDYTY----------------ANM-----  233 (414)
T ss_dssp             EEEEEEECTTTCCEEEECCCEEEECC--SCCSSCCCEEEEEEEETTEEEEEEECSS----------------SSC-----
T ss_pred             EEEEEEEeccCCCCCccCcccccccc--cccccCCCCccEEEEecCCeEEEECCCC----------------CCe-----
Confidence            999999994  688888766543333  356777888776 333456778897742                122     


Q ss_pred             HhhhceeeEEeeeecc-------CCCCCCceeeeeccccccCCCCCCCC-CccCcccce--eeccccccc---Cceeecc
Q psy8139         836 LMLFTFIETISSFRDK-------YVDNEDDYDIVETNEHTGTGAPSDNE-NESDYFPEK--TIDESVYGY---DTIVYGY  902 (1101)
Q Consensus       836 ~~~~~~~~Y~v~~r~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~~t~Y~--V~a~n~~G~---~~~v~~~  902 (1101)
                             +|.|.|+..       +....|.....-.   .......++. ++.+++.|.  |+|.|..|.   +..+...
T Consensus       234 -------~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~  303 (414)
T 3se4_A          234 -------TFQVQWLHAFLKRNPGNHLYKWKQIPDCE---NVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD  303 (414)
T ss_dssp             -------EEEEEEEESGGGSCCCC--CCCCBCSTTT---TBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEE
T ss_pred             -------EEEEEEEehhccccccccccCceECCCcc---CCCCCEEcCCcccccCccEEEEEEEecCCCccccccccccc
Confidence                   788877753       1234565421000   0111112222 355888899  999999987   5567777


Q ss_pred             cCCCCccCCCCCChhhhhhhhhhhccc-cccccc------cchhhcccccchhhhhhcccccccccccccCCceeEeecC
Q psy8139         903 DSDDLDRHYPTLDEEEEEEDRESLVKD-RESSVK------GKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDK  975 (1101)
Q Consensus       903 t~e~~P~~~P~~v~~~~~~~n~t~v~v-p~~~~n------G~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~  975 (1101)
                      +.+++|..||. +.+... .++..|.| ||...+      |.+.+|.|     .||+.++.....  .. .....++|.+
T Consensus       304 t~~~~~~~pP~-l~~~~~-~~si~v~W~~P~~~~~~~~~~~~~~~Y~v-----~y~~~~~~~~~~--~~-~~~~~~~l~~  373 (414)
T 3se4_A          304 TEIQAFLLPPV-FNIRSL-SDSFHIYIGAPKQSGNTPVIQDYPLIYEI-----IFWENTSNAERK--II-EKKTDVTVPN  373 (414)
T ss_dssp             TTCC----------------------------------------------------------------------------
T ss_pred             chhccccCCCe-EEEEEC-CCeEEEEEECCCCccccchhhcCCeEEEE-----EEEECCCCceEE--EE-ecCCeEEeCC
Confidence            88888888998 888865 24455555 555544      58899999     888876543322  22 3456789999


Q ss_pred             CCCCCCceeec
Q psy8139         976 PDDEPDYVIKG  986 (1101)
Q Consensus       976 ~~~~~~~~~~~  986 (1101)
                      |++++.|.|+.
T Consensus       374 L~p~t~Y~~~V  384 (414)
T 3se4_A          374 LKPLTVYCVKA  384 (414)
T ss_dssp             -----------
T ss_pred             CCCCCeEEEEE
Confidence            99999999998

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.73  E-value=2.5e-16  Score=175.04  Aligned_cols=255  Identities=12%  Similarity=0.136  Sum_probs=183.0

Q ss_pred             eeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      .+.+.+|+.+.|.|... +.|.+.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|..|... +..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~   88 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL   88 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence            45688999999998775 6788999999999999888888888878778999999999999999999999988554 566


Q ss_pred             Eeecc------------CCccccCCCCCCCeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEee--cceE
Q psy8139         540 LRLEA------------PPTIRLPKQYEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHT--DRYL  604 (1101)
Q Consensus       540 l~V~~------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~  604 (1101)
                      +.|..            +|.+...+.  ....+..|+.+.|.|.+. +.|.+.+.|++++..+..+.++.+...  ....
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  166 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSE--LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII  166 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEE--EEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred             EEEeeeeeeecccccCCCCccccccC--CceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence            66653            444432211  145778899999999999 889999999999999987776666543  4456


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC------------------CCCCC---ccEEEEecCCeEEEEee
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR------------------PLPPG---KAKVVMTLGKSVTLSWS  663 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~------------------P~~P~---~~~~~~~~~~sv~lsW~  663 (1101)
                      +|.|.++...|.|.|+|.|.|..+..  ...+.+...                  ..+|.   .+......+..+.|.|.
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~  244 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCK  244 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEE
T ss_pred             EEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEE
Confidence            79999999999999999998654433  333333100                  11121   22245567889999998


Q ss_pred             cCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccC
Q psy8139         664 EPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE  743 (1101)
Q Consensus       664 ~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~  743 (1101)
                      ....+                                 ....+.|...    |.++.     .  .+  ... ..   ..
T Consensus       245 ~~~~p---------------------------------~~~~v~W~~~----g~~~~-----~--~~--~~~-~~---~~  274 (312)
T 2y23_A          245 VANIK---------------------------------KETHIVWYKD----EREIS-----V--DE--KHD-FK---DG  274 (312)
T ss_dssp             EESCC---------------------------------SSCEEEEEET----TEEEE-----E--EC--CC--------C
T ss_pred             EcCCC---------------------------------CCCEEEEeeC----CEECC-----C--CC--cEE-EE---CC
Confidence            63211                                 1124677642    11111     0  00  000 00   23


Q ss_pred             ccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         744 DTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       744 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      ...++|.++.+.....|.|.|.|..|.
T Consensus       275 ~~~L~I~~v~~~d~G~Y~C~a~N~~G~  301 (312)
T 2y23_A          275 ICTLLITEFSKKDAGIYEVILKDDRGK  301 (312)
T ss_dssp             EEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred             EEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence            468899999999999999999999996

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.72  E-value=4.2e-16  Score=174.09  Aligned_cols=259  Identities=12%  Similarity=0.033  Sum_probs=168.2

Q ss_pred             EEeeCCEEEEEEEEeecC-CCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      .+..|.+++|.|.+.+.+ .+.|.|.+++..+..... ...  ...+.|.|.++...|.|.|+|.   ..|.....+.|.
T Consensus        17 ~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~--~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~   90 (325)
T 1n26_A           17 TSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RWA--GMGRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLL   90 (325)
T ss_dssp             EECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-EEE--EESSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEE
T ss_pred             ECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccc-ccc--cccceEEecccchhhCeEeEEE---eCCEEeeeEEEE
Confidence            345899999999988765 789999998776532211 111  2246899999999999999999   367777889999


Q ss_pred             EecCCCCCCccEEEE-ecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCC
Q psy8139         638 VTDRPLPPGKAKVVM-TLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG  716 (1101)
Q Consensus       638 v~~~P~~P~~~~~~~-~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~  716 (1101)
                      |..+|..|. +.... ....++.++|.++.+ ++                                              
T Consensus        91 V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~-~~----------------------------------------------  122 (325)
T 1n26_A           91 VDVPPEEPQ-LSCFRKSPLSNVVCEWGPRST-PS----------------------------------------------  122 (325)
T ss_dssp             ECCCCCCCC-CEEEBSSTTSCEEEEECCSSC-CC----------------------------------------------
T ss_pred             eccCCCCCc-eeEEeecCCCcEEEEECCCCC-CC----------------------------------------------
Confidence            999998886 65542 235577777775432 11                                              


Q ss_pred             CCcceEEEEEEeCC-C--CCc-eeecc-cccCccEEEEcCCC-CCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCC
Q psy8139         717 SPVLGYLVEHRRTG-S--PYW-VRASP-HMVEDTELMVSGLE-PGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA  790 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~-~--~~~-~~~~~-~~~~~~~~~i~~L~-p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~  790 (1101)
                       ...+|.|.|+... .  ..| ..+.. ......+++|..+. +++.|.|+|.|.|..|.+. +..  .........++.
T Consensus       123 -~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~-s~~--~~~~~~~~v~P~  198 (325)
T 1n26_A          123 -LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF-SKT--QTFQGCGILQPD  198 (325)
T ss_dssp             -TTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEE-CCC--EEEETTTCBCCC
T ss_pred             -CCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcc-cCc--EEEeeccccCCC
Confidence             2355666665431 1  122 22211 11345678888876 8899999999999999864 211  122222345677


Q ss_pred             CCcccc--ccc--ccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccc
Q psy8139         791 APSFIR--ALH--DTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNE  866 (1101)
Q Consensus       791 ~p~~~~--~~~--~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~  866 (1101)
                      ||.++.  ...  ++++.+.|.||...+          .+++++            .|.|.|+..+ ...|....+..  
T Consensus       199 pP~~l~v~~~~~~~~sv~lsW~~p~~~~----------~~~~~~------------~Y~V~yr~~~-~~~W~~~~~~~--  253 (325)
T 1n26_A          199 PPANITVTAVARNPRWLSVTWQDPHSWN----------SSFYRL------------RFELRYRAER-SKTFTTWMVKD--  253 (325)
T ss_dssp             CCEEEEEEECTTCTTCEEEEEECCTTCC----------CSSSCE------------EEEEEEEETT-CSCCEEEECGG--
T ss_pred             CCcceEEEEecCCCCEEEEEECCCCccC----------CCcEeE------------EEEEEEEeCC-CCCCEEEcccC--
Confidence            887765  222  247888998864421          234456            8999998875 45687654422  


Q ss_pred             cccCCCCCCCCCccCcccce--eeccccccc------Cceeeccc
Q psy8139         867 HTGTGAPSDNENESDYFPEK--TIDESVYGY------DTIVYGYD  903 (1101)
Q Consensus       867 ~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t  903 (1101)
                         ......+.+|.+++.|+  |+|.|..|.      +..+.+.+
T Consensus       254 ---~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~  295 (325)
T 1n26_A          254 ---LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTP  295 (325)
T ss_dssp             ---GCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECC
T ss_pred             ---CceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceec
Confidence               11222344455999999  999998774      45555544

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.72  E-value=5.9e-17  Score=187.47  Aligned_cols=209  Identities=12%  Similarity=-0.005  Sum_probs=86.1

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeC--CCCceeEEEEEEec----CCCCCCccEEEEecCCeEEEEeecCCCCCCccccee
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNS--LGEDVASFLVTVTD----RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNY  676 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~--~G~~~~s~~l~v~~----~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y  676 (1101)
                      ...+.|.+|.++..|.+++.|.|.  .|.+..+....+..    ++.+|.++.+.... .++.|+|++|.          
T Consensus       162 ~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~----------  230 (414)
T 3se4_A          162 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTY----------  230 (414)
T ss_dssp             CSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSS----------
T ss_pred             CcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCC----------
Confidence            456889999999999999999994  56555443333332    23556666665443 45667777542          


Q ss_pred             EEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeC--------CCCCceeecc-cccCccEE
Q psy8139         677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--------GSPYWVRASP-HMVEDTEL  747 (1101)
Q Consensus       677 ~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~--------~~~~~~~~~~-~~~~~~~~  747 (1101)
                                                               ...+|.|+|+..        +...|..+.. .....+.+
T Consensus       231 -----------------------------------------~~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  269 (414)
T 3se4_A          231 -----------------------------------------ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQC  269 (414)
T ss_dssp             -----------------------------------------SSCEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEE
T ss_pred             -----------------------------------------CCeEEEEEEEehhccccccccccCceECCCccCCCCCEE
Confidence                                                     124788888763        2456765421 12445677


Q ss_pred             EEc-CCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccccccccceeccccCCCCCCccccceeeeecC
Q psy8139         748 MVS-GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQST  826 (1101)
Q Consensus       748 ~i~-~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~  826 (1101)
                      .++ +|.+++.|.|+|.|.|..|.|++|....+.  +.++.+++||.+......+++.+.|.||...++...      .+
T Consensus       270 ~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~--t~~~~~~~pP~l~~~~~~~si~v~W~~P~~~~~~~~------~~  341 (414)
T 3se4_A          270 VFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD--TEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPV------IQ  341 (414)
T ss_dssp             EEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEE--TTCC----------------------------------------
T ss_pred             cCCcccccCccEEEEEEEecCCCccccccccccc--chhccccCCCeEEEEECCCeEEEEEECCCCccccch------hh
Confidence            776 699999999999999999998887554333  334667888884334345677888988655332110      01


Q ss_pred             cchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccc
Q psy8139         827 SPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDES  891 (1101)
Q Consensus       827 ~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n  891 (1101)
                      +.++            .|.|.|...+....+.. .       .......+.+|++.+.|.  |+|.+
T Consensus       342 ~~~~------------~Y~v~y~~~~~~~~~~~-~-------~~~~~~~l~~L~p~t~Y~~~V~A~~  388 (414)
T 3se4_A          342 DYPL------------IYEIIFWENTSNAERKI-I-------EKKTDVTVPNLKPLTVYCVKARAHT  388 (414)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             cCCe------------EEEEEEEECCCCceEEE-E-------ecCCeEEeCCCCCCCeEEEEEEEEe
Confidence            2233            78887766553333221 1       122234455666999999  88887

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.72  E-value=5.7e-17  Score=175.64  Aligned_cols=200  Identities=18%  Similarity=0.175  Sum_probs=146.9

Q ss_pred             ceEEEcCc---cCCccE--EEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC
Q psy8139         406 TELMVSGL---EPGWRY--QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP  480 (1101)
Q Consensus       406 ~~l~i~~L---~p~d~y--~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p  480 (1101)
                      ..+.+..+   +..|.|  .|+|.|.|..|...     ..+.+.+...  .+|.+.  +.+..+.+|+.++|.|.+.  |
T Consensus        56 ~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~-----~~~~l~V~~~--p~p~~~--~~~~~v~~G~~v~l~C~~~--p  124 (265)
T 2oz4_A           56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE-----TLQTVTIYSF--PAPNVI--LTKPEVSEGTEVTVKCEAH--P  124 (265)
T ss_dssp             SEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE-----EEEEEEEECC--CCCEEE--ESCSEEETTCEEEEEEECC--T
T ss_pred             CeEEEEeecccccccCCcceEEEEEecCCCCcE-----EEEEEEEeCC--CCceee--cCCceecCCCcEEEEEEcc--C
Confidence            35555555   667766  59999999887642     2344554322  124444  4466788899999999998  8


Q ss_pred             CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC-CceE---EEEEEeeccCCccccCCCCCC
Q psy8139         481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA-GHSI---TKARLRLEAPPTIRLPKQYED  556 (1101)
Q Consensus       481 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~-g~~~---~s~~l~V~~~p~~~~~~~~~~  556 (1101)
                      .+.++|  +|..+..        .+..+.|.|..+...|.|.|+|.|.|.. |...   ....|.|..+|.+.... .+.
T Consensus       125 ~~~i~W--~g~~~~~--------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~-~p~  193 (265)
T 2oz4_A          125 RAKVTL--NGVPAQP--------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD-CPG  193 (265)
T ss_dssp             TSEEEE--SSCSSSC--------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGG-SCS
T ss_pred             CCEEEE--CCEEccC--------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcccccc-CCC
Confidence            899999  7766532        2234578899999999999999998644 6655   56778888887764332 223


Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+...+           .+  ..+...|.|.|+|.|.|..|.......|
T Consensus       194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g-----------~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  260 (265)
T 2oz4_A          194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------ES--VTVTRDLEGTYLCRARSTQGEVTREVTV  260 (265)
T ss_dssp             EEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------SC--EECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCC-----------cE--EEeehhhCeEEEEEEECCCCcEEEEEEE
Confidence            5578889999999999999999999999987322211           11  1377789999999999999998888888


Q ss_pred             EEec
Q psy8139         637 TVTD  640 (1101)
Q Consensus       637 ~v~~  640 (1101)
                      .|..
T Consensus       261 ~V~~  264 (265)
T 2oz4_A          261 NVLS  264 (265)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8864

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.71  E-value=7.6e-17  Score=166.70  Aligned_cols=172  Identities=17%  Similarity=0.210  Sum_probs=134.0

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..|.+...|.+..+.+|++++|.|.+.+.|.+. +.|+++|..+....          ..|.|.++...|+|.|+|.+.|
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n   75 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQL   75 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETT
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCC
Confidence            557777788888899999999999999988876 99999998875432          4899999999999999999987


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      .  ..+....|.|..+|.+...+.    ..+..|+.+.|.|.+.+. |.+.+.|+++|..+..        ......|.|
T Consensus        76 ~--~~s~~~~l~V~~~p~~~~~~~----~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~L~i  141 (204)
T 3sgj_C           76 S--TLSDPVQLEVHIGWLLLQAPR----WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYI  141 (204)
T ss_dssp             S--BCCCCEEEEEECSSEEEECSC----SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEE
T ss_pred             C--cccccEEEEEecCceEecCCc----eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec--------ccCCceEEE
Confidence            4  444567788887776554433    367889999999999765 5689999999987532        122567999


Q ss_pred             ccCCCCCCeEEEEEEEeC-CCCceeEEEEEEecCCCCCC
Q psy8139         609 SDARRADRGEYQAHGVNS-LGEDVASFLVTVTDRPLPPG  646 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~-~G~~~~s~~l~v~~~P~~P~  646 (1101)
                      .++...|.|.|+|.|.|. .+..+....|.|..+|.+|.
T Consensus       142 ~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          142 PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred             CcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence            999999999999999994 44556678888988776663

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.71  E-value=1.1e-16  Score=166.70  Aligned_cols=181  Identities=21%  Similarity=0.314  Sum_probs=138.9

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEe------------ecCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI------------FSSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~------------~~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +.+...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+            ....++.+..    ..|.|.++...|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccC
Confidence            34556677888999999999999999999999999976442            1123333332    4899999999999


Q ss_pred             EEEEEEEEeCCC--ceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEE-EeecCCCeeEEEECCe-ecCCCCc--
Q psy8139         521 GEIKCTATNRAG--HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS-MAGMPPPTARWLHNGE-PLTSGGR--  594 (1101)
Q Consensus       521 g~Y~C~a~n~~g--~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~-~~g~p~~~v~W~~~g~-~l~~~~~--  594 (1101)
                      |.|+|.+.|..|  .......|.|..+|.+...+.   ...+..|+.+.|.|. +.+.|.+.+.|++++. .+.....  
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~  154 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKT  154 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----C
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC---ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccc
Confidence            999999999877  445567888888876654332   236788999999999 7899999999999998 7764322  


Q ss_pred             -----eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc--eeEEEEEEec
Q psy8139         595 -----YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED--VASFLVTVTD  640 (1101)
Q Consensus       595 -----~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~--~~s~~l~v~~  640 (1101)
                           ...........|.|.++...|.|.|+|.|.|..|..  +....|.|.+
T Consensus       155 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          155 RAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             BSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence                 112233446789999999999999999999999987  4566666664

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.71  E-value=6.3e-17  Score=190.53  Aligned_cols=213  Identities=15%  Similarity=0.208  Sum_probs=128.9

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc-----------C--CCCCCee-eecCceeE-EccCCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR-----------S--PAAAPSF-IRALHDTT-ALEDEKV  470 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~-----------~--~~~~P~~-~~~p~~~~-v~~g~~v  470 (1101)
                      ..|.|.++...| |.|+|.|.|..+....     ..++.+..           .  ...+|.+ ...|.... +..|+++
T Consensus       194 s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v  267 (457)
T 1hzh_H          194 SVVTVPSSSLGT-QTYICNVNHKPSNTKV-----DKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTP  267 (457)
T ss_dssp             EEEEECSGGGGT-SCCEEEEEEGGGTEEE-----EEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCC
T ss_pred             EEEEecccccCC-ceEEEEEEeCCCCcce-----eEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCce
Confidence            468999999988 9999999997664211     11111110           0  1124554 33343332 5679999


Q ss_pred             EEEEEEeccCCC----eEEEEECCEEeecCCcEE-EEecCCeeEEEEee---cCCCC---CEEEEEEEEeCCCceEEEEE
Q psy8139         471 EFTVQVEGIPTP----KVSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQ---AALMD---EGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       471 ~L~C~~~g~p~~----~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~---l~~~d---~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      +|.|.+.|.|++    .|+|++++..+....... ....++  .+.+.+   +...|   +|.|+|.|.|..+.......
T Consensus       268 ~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g--~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~  345 (457)
T 1hzh_H          268 EVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS--TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT  345 (457)
T ss_dssp             CEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTS--CEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEE
T ss_pred             EEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCC--cEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEE
Confidence            999999997653    899999998875432111 112222  344432   23445   99999999987665544434


Q ss_pred             Ee----eccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCC--CeeEEEECCeecCCCCceEEEeecc-----eEEEEE
Q psy8139         540 LR----LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP--PTARWLHNGEPLTSGGRYEITHTDR-----YLNLRI  608 (1101)
Q Consensus       540 l~----V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~--~~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~i  608 (1101)
                      +.    +..+|.+...+....  .+. +..+.|.|.+.|.++  +.+.|+++|..+............+     ...+.+
T Consensus       346 v~~~~~~~~~P~v~~~~~~~~--~~~-~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i  422 (457)
T 1hzh_H          346 ISKAKGQPREPQVYTLPPSRD--ELT-KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV  422 (457)
T ss_dssp             ECCCCCCCBCCEEEEECCCGG--GGG-SSEEEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEE
T ss_pred             EEcccCCCCCCeEEEECCCcc--ccC-CCcEEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEE
Confidence            43    345565543222111  122 444999999999644  4999999999886432111111111     234555


Q ss_pred             ccCCCCCCeEEEEEEEeCCCC
Q psy8139         609 SDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ......+.|.|+|.|.|....
T Consensus       423 ~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          423 DKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             EHHHHHTTCCEEEEEECTTSG
T ss_pred             ChHHccCCCeEEEEEEECCCC
Confidence            555556789999999997644

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.71  E-value=7.9e-17  Score=188.94  Aligned_cols=254  Identities=13%  Similarity=0.125  Sum_probs=160.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~-  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+...  ..+....+.+......+|.+...+....+..|+.++|.|.+.|. |.+ 
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~--~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  155 (444)
T 1igt_B           78 TLYLQMSRLKSEDTAMYYCARHGGYYAMD--YWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV  155 (444)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSCEE--EEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCC
T ss_pred             eEEEEECCCCHHHCEEEEEEEecCCcccc--cccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCc
Confidence            35799999999999999999999754310  01122455555333445655433333335789999999999885 776 


Q ss_pred             eEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec----------------
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE----------------  543 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~----------------  543 (1101)
                      .++|++++..+...........+   ..+.|.|.++...| |.|+|.|.|..|.......+.+.                
T Consensus       156 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  234 (444)
T 1igt_B          156 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPN  234 (444)
T ss_dssp             EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSC
T ss_pred             EEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcc
Confidence            99999987653110000000011   12368999999889 99999999999886555554331                


Q ss_pred             --cCCcc-ccCCCCCCCeEEeeCCEEEEEEEEeecC----CCeeEEEECCeecCCCCce--EEEee---cceEEEEEccC
Q psy8139         544 --APPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMP----PPTARWLHNGEPLTSGGRY--EITHT---DRYLNLRISDA  611 (1101)
Q Consensus       544 --~~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~g~~l~~~~~~--~~~~~---~~~~sl~i~~l  611 (1101)
                        .+|.+ ..+|...  ..+..|+.+.|.|.+.|.+    .+.+.|+++|..+......  .....   ...+.|.|.++
T Consensus       235 ~~~~p~v~~~~p~~~--~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  312 (444)
T 1igt_B          235 LLGGPSVFIFPPKIK--DVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQ  312 (444)
T ss_dssp             CCCCCEEEEECCCHH--HHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHH
T ss_pred             cCCCceEEecCCchh--heeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHH
Confidence              13332 2222110  0136699999999999984    4699999999887543211  11111   12467999999


Q ss_pred             CCCCCeEEEEEEEeCCCCceeEEEEEE-ecCCCCCCccEEEE-----ecCCeEEEEeec
Q psy8139         612 RRADRGEYQAHGVNSLGEDVASFLVTV-TDRPLPPGKAKVVM-----TLGKSVTLSWSE  664 (1101)
Q Consensus       612 ~~~~~y~y~c~A~N~~G~~~~s~~l~v-~~~P~~P~~~~~~~-----~~~~sv~lsW~~  664 (1101)
                      ...|.|.|+|.|.|..|.......+.. ...+.+|. +.+..     +....++|.|..
T Consensus       313 ~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~L~C~~  370 (444)
T 1igt_B          313 DWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ-VYVLPPPEEEMTKKQVTLTCMV  370 (444)
T ss_dssp             HHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE-EEEECCCGGGTTSSEEEEEEEE
T ss_pred             HhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE-EEEeCCChHHccCCeEEEEEEE
Confidence            999999999999999887644443322 12233331 11111     123458888875

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.71  E-value=1.7e-16  Score=166.13  Aligned_cols=186  Identities=26%  Similarity=0.447  Sum_probs=142.7

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCee--EEEEeecCCCCCEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDIS--TLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~--~l~I~~l~~~d~g~Y~C  525 (1101)
                      ..+|.|...|.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+....  ...+...++..  .+.|.++...|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            478899999999999999999999999999999999999999886542  22233333321  23688999999999999


Q ss_pred             EEEeCCCceEE-EEEEeecc-CCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCC--------Cc
Q psy8139         526 TATNRAGHSIT-KARLRLEA-PPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSG--------GR  594 (1101)
Q Consensus       526 ~a~n~~g~~~~-s~~l~V~~-~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~--------~~  594 (1101)
                      .+.|..|.... ...|.|.. +|.+...+   ....+..|+.+.|.|.+ .+.|.+.+.|+++|..+...        .+
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~---~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  163 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEP---KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR  163 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCC---CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECC---CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc
Confidence            99999887643 45666655 44443333   24578889999999999 89999999999999988732        22


Q ss_pred             eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      +...   ..++|.|.++...|.|.|+|.|.|..|....+..+.+...
T Consensus       164 ~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~  207 (217)
T 2vr9_A          164 VRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV  207 (217)
T ss_dssp             EEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEec---CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence            2222   2457999999999999999999999998777655555543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.70  E-value=1.5e-16  Score=165.76  Aligned_cols=190  Identities=24%  Similarity=0.414  Sum_probs=141.4

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC-----cEEEEecCCee--EEEEeecCCCCCEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR-----RQRIVTDNDIS--TLIIHQAALMDEGE  522 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~-----~~~~~~~~~~~--~l~I~~l~~~d~g~  522 (1101)
                      ..+|.|...|.++.+.+|++++|.|.+.+.|.+.+.|++++..+....     .......+...  .+.|.++...|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            357888888999999999999999999999999999999998876432     12222222211  23445678999999


Q ss_pred             EEEEEEeCCCce-EEEEEEeeccC-CccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCceEEEe
Q psy8139         523 IKCTATNRAGHS-ITKARLRLEAP-PTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITH  599 (1101)
Q Consensus       523 Y~C~a~n~~g~~-~~s~~l~V~~~-p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~~~~  599 (1101)
                      |+|.+.|..|.. .....|.|... +.+...+   ....+..|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~  163 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNP---SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR  163 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEECSSCSBCC---CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE
T ss_pred             EEEEEECCCCceeecceEEEEEeccccceeCC---CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc
Confidence            999999998865 33566777653 3332222   34578899999999998 899999999999999887543322222


Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEEEEEecCCCCC
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRPLPP  645 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~~~P~~P  645 (1101)
                         .+.|.|.++...|.|.|+|.|.|..|.... ...|.|..+|..+
T Consensus       164 ---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          164 ---GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             ---TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             ---CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence               458999999999999999999999998654 4788888777543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.70  E-value=3.8e-17  Score=184.18  Aligned_cols=187  Identities=16%  Similarity=0.146  Sum_probs=146.0

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEe-------ccCCCeEEEEECCEEe--ecCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVE-------GIPTPKVSWYKDGFEI--FSSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~-------g~p~~~v~W~~~g~~~--~~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ..|.+...|.+..+.+|+++.|.|.+.       +.|.+.+.|++++..+  .......+...++  .|.|.++...|+|
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G   94 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDSG   94 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCCE
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccCE
Confidence            567888889999999999999999998       8999999999998763  3321223333333  8999999999999


Q ss_pred             EEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEE-----EeecCCCeeEEEECCeecCCC-Cce
Q psy8139         522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS-----MAGMPPPTARWLHNGEPLTSG-GRY  595 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~-----~~g~p~~~v~W~~~g~~l~~~-~~~  595 (1101)
                      .|+|.+.|..|.......|.|..++....+. ......+..|..+.|.|.     +.+.|.+.+.|+++|..+... .++
T Consensus        95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           95 TYVCTTRNASYCDKMSIELRVFENTDAFLPF-ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EEECCEEETTEEEEEEEEEEEECSCGGGHHH-HCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEEECCcceEEEEEEEEEEcCCCccccc-cccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            9999999999988888889998776543111 111236788999999999     788999999999999988754 334


Q ss_pred             EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC----ceeEEEEEEecCC
Q psy8139         596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGE----DVASFLVTVTDRP  642 (1101)
Q Consensus       596 ~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~----~~~s~~l~v~~~P  642 (1101)
                      .+.  .+...|.|.++...|.|.|+|.|.|..|.    ......|.|...+
T Consensus       174 ~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          174 LSV--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             EEC--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred             EEc--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence            332  23458999999999999999999999884    3456677777543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.70  E-value=3.9e-16  Score=173.94  Aligned_cols=275  Identities=13%  Similarity=0.046  Sum_probs=170.1

Q ss_pred             ccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEE
Q psy8139         446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       446 ~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      +.....+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+++|..+.....    .......|.|.++...|+|.|+|
T Consensus        18 ~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C   91 (316)
T 3vh8_G           18 HMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYTC   91 (316)
T ss_dssp             ------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEEE
T ss_pred             ccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEEE
Confidence            334457888888887 568899999999999987 678999999876432100    01223479999999999999999


Q ss_pred             EEEeCCC-----ceEEEEEEeeccC---CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCce-E
Q psy8139         526 TATNRAG-----HSITKARLRLEAP---PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-E  596 (1101)
Q Consensus       526 ~a~n~~g-----~~~~s~~l~V~~~---p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~-~  596 (1101)
                      .|.|..+     ..+....|.|...   |.+...+.    ..+..|+.++|.|.+. .+.+.+.|+++|..+...... .
T Consensus        92 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~----~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~  166 (316)
T 3vh8_G           92 RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG----PLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ  166 (316)
T ss_dssp             EEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESC----SEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE
T ss_pred             EEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCC----CccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee
Confidence            9986432     2233456666542   33332221    2478899999999994 566799999998877532211 1


Q ss_pred             EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-----eeEEEEEEecCCCCCCccEE----EEecCCeEEEEeecCCC
Q psy8139         597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-----VASFLVTVTDRPLPPGKAKV----VMTLGKSVTLSWSEPED  667 (1101)
Q Consensus       597 ~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-----~~s~~l~v~~~P~~P~~~~~----~~~~~~sv~lsW~~p~~  667 (1101)
                      .........|.|.++...|.|.|+|.|.|..|..     +....+.|...+.+|. +..    ....+.+++|.|.... 
T Consensus       167 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~-i~~~~~~~v~~G~~v~L~C~~~~-  244 (316)
T 3vh8_G          167 IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS-LSAQPGPKVQAGESVTLSCSSRS-  244 (316)
T ss_dssp             EETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCE-EEEESCSCCCTTSCCEEEEEESS-
T ss_pred             ecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCe-EEeCCCCeecCCCcEEEEEECCC-
Confidence            1222346789999999999999999999998852     4456777776555542 111    1234677888887531 


Q ss_pred             CCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEE
Q psy8139         668 DGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL  747 (1101)
Q Consensus       668 ~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~  747 (1101)
                                                        ....+.|....    ..+..-....          ..........+
T Consensus       245 ----------------------------------~~~~~~W~k~g----~~~~~~~~~~----------~~~~~~~~~~L  276 (316)
T 3vh8_G          245 ----------------------------------SYDMYHLSREG----GAHERRLPAV----------RKVNRTFQADF  276 (316)
T ss_dssp             ----------------------------------CCSEEEEEETT----SSCCEEEECE----------ECTTSCEEEEE
T ss_pred             ----------------------------------CCcEEEEEECC----CcCCCceece----------eccCCceeEEE
Confidence                                              01245665421    1111100000          00000223577


Q ss_pred             EEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|.++.  +...|+|.|.|..|...+|..+..+.+.
T Consensus       277 ~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  310 (316)
T 3vh8_G          277 PLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVS  310 (316)
T ss_dssp             ECC-------CEEEEEEEBTTBTTEECCCCCCEEC-
T ss_pred             EcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEE
Confidence            888888  7899999999988764445555555543

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.70  E-value=2.1e-17  Score=209.20  Aligned_cols=287  Identities=12%  Similarity=0.049  Sum_probs=174.4

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeC--------------CCCCceeeccccc---------CccEEEEcCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--------------GSPYWVRASPHMV---------EDTELMVSGLEP  754 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~--------------~~~~~~~~~~~~~---------~~~~~~i~~L~p  754 (1101)
                      .++++++.|+|++|..+++++|.+|.|+|+..              ++..|........         ..++++|.+|.|
T Consensus       479 ~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~L~P  558 (897)
T 2dtg_E          479 RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKP  558 (897)
T ss_dssp             EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCS
T ss_pred             EEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeCCCCC
Confidence            56889999999999877778899999999875              2356766443211         258899999999


Q ss_pred             CceEEEEEEE-EcCCcc----CCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCc
Q psy8139         755 GWRYQFRITA-ENVVGF----SEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTS  827 (1101)
Q Consensus       755 ~t~Y~~~V~A-~n~~G~----g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~  827 (1101)
                      +|.|.|+|.| .|..|.    |++|....+.|.   ..+|.+|..+.  ..+++++.+.|.||...++.+..|.......
T Consensus       559 ~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~---~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~~~~  635 (897)
T 2dtg_E          559 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD---ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQ  635 (897)
T ss_dssp             SCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC---CCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEE
T ss_pred             CcEEEEEEEEEEeccCCccccCCccceEEEECC---CCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEEEEC
Confidence            9999999999 999998    555554433333   34455777665  5566788899999987777766664432110


Q ss_pred             ch---h--HHHHhH-hhhceeeEEeeeeccCC----------------------------------CCCCceee------
Q psy8139         828 PM---L--AAFMLL-MLFTFIETISSFRDKYV----------------------------------DNEDDYDI------  861 (1101)
Q Consensus       828 ~~---~--~~~~v~-~~~~~~~Y~v~~r~~~~----------------------------------~~~~~~~~------  861 (1101)
                      ..   .  ..+.+. .+.+...|.+.......                                  .-.|....      
T Consensus       636 ~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~~~~n~v~~  715 (897)
T 2dtg_E          636 AEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV  715 (897)
T ss_dssp             CCCCSCTTCSSSCSCCCCCC------------------------------------------------------------
T ss_pred             CCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEEccCceEEc
Confidence            00   0  000000 00111112111110000                                  00011000      


Q ss_pred             ------------eec---------cccccCCCCCCCCCccCcccce--eeccccccc------CceeecccCC-CCccCC
Q psy8139         862 ------------VET---------NEHTGTGAPSDNENESDYFPEK--TIDESVYGY------DTIVYGYDSD-DLDRHY  911 (1101)
Q Consensus       862 ------------v~~---------~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e-~~P~~~  911 (1101)
                                  +..         ...........+.+|.+++.|.  |+|.|..|.      +..+...|.+ ..|+.+
T Consensus       716 ~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~~~~~~p~~  795 (897)
T 2dtg_E          716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDI  795 (897)
T ss_dssp             --------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCCCCCCCCC
T ss_pred             cCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEeccCccCCCCC
Confidence                        000         0001111334455666999999  999999985      3456666665 344578


Q ss_pred             CCCChhhhhhhhhhhccc-cccccccchhhcccccchhhhhhccccccccc-cc-ccCCceeEeecCCCCCCCceeec-e
Q psy8139         912 PTLDEEEEEEDRESLVKD-RESSVKGKEEEAKVIKDDEYYENLGDVLTKKY-SL-PVNSDIQIKIDKPDDEPDYVIKG-K  987 (1101)
Q Consensus       912 P~~v~~~~~~~n~t~v~v-p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~-~l-~~~~~~~~~i~~~~~~~~~~~~~-~  987 (1101)
                      |.++.+...+.++..|.| ||...||.|.||.|     .|+..++...... .. .......++|.+|.+| .|.|+. +
T Consensus       796 P~~l~~~~~~~~sv~LsW~~P~~~nG~I~~Y~V-----~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A  869 (897)
T 2dtg_E          796 VGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEV-----SYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRA  869 (897)
T ss_dssp             CCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECC-----CCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCE
T ss_pred             CcceEEEeCCCCEEEEEECCCCCCCCCEEEEEE-----EEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEEEEEE
Confidence            889998887444455555 78889999999999     8888776222111 11 1234557899999999 599988 5


Q ss_pred             eeechh
Q psy8139         988 YEVDNE  993 (1101)
Q Consensus       988 ~~~~~~  993 (1101)
                      +...+.
T Consensus       870 ~n~~G~  875 (897)
T 2dtg_E          870 TSLAGN  875 (897)
T ss_dssp             EETTBC
T ss_pred             EeCCcc
Confidence            544444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.69  E-value=2.6e-16  Score=178.17  Aligned_cols=267  Identities=15%  Similarity=0.104  Sum_probs=159.4

Q ss_pred             CceeEEccCCeEEEEEEEeccCC-----------CeEEEEECCE------Eee-cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPT-----------PKVSWYKDGF------EIF-SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~-----------~~v~W~~~g~------~~~-~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +.++.+.+|+++.|.|.+.+.|.           +.+.|++++.      .+. ......+...++  .|.|.++...|+
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~   91 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPTLLNDT   91 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEEESSCCGGGC
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEEEccCChhhC
Confidence            45678999999999999987654           8999999873      221 011122222333  899999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeeccCCccccCCC-CCCCeEEeeCCEEEEEEEE-----eecCCCeeEEEECCeecCCCCc
Q psy8139         521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQ-YEDGLLFEMGEIIKLKVSM-----AGMPPPTARWLHNGEPLTSGGR  594 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~-~~~~~~v~~g~~~~l~c~~-----~g~p~~~v~W~~~g~~l~~~~~  594 (1101)
                      |.|+|.|.|..|....++.|.|..+|....+.. .+....+..|+.+.|.|.+     .|.|.+.+.|++++..+.....
T Consensus        92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~  171 (349)
T 4dep_C           92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN  171 (349)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred             EEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence            999999999999888888899988665433221 1223467789999999985     7789999999999998865433


Q ss_pred             eEEEeecceEEEEEccCCCCCCeEEEEEEEeCC-CCc---eeEEEEEEecCCC---CCCcc-----E-EEEecCCeEEEE
Q psy8139         595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSL-GED---VASFLVTVTDRPL---PPGKA-----K-VVMTLGKSVTLS  661 (1101)
Q Consensus       595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~-G~~---~~s~~l~v~~~P~---~P~~~-----~-~~~~~~~sv~ls  661 (1101)
                      +..  .  ...|.|.++...|.|.|+|.|.|.. |..   +....+.|..++.   +|.-.     . +....+..++|.
T Consensus       172 ~~~--~--~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~  247 (349)
T 4dep_C          172 VIP--E--GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP  247 (349)
T ss_dssp             EEE--E--TTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCC
T ss_pred             eee--c--CCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEE
Confidence            322  2  3579999999999999999999987 443   4556666765432   22110     1 133345667777


Q ss_pred             eecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcce----EEEEEEeCCCCCceee
Q psy8139         662 WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG----YLVEHRRTGSPYWVRA  737 (1101)
Q Consensus       662 W~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~----Y~V~~~~~~~~~~~~~  737 (1101)
                      |.....+.|                              .....+.|....    .++..    |.+.-......     
T Consensus       248 C~~~~~~~g------------------------------~p~p~v~W~~~g----~~l~~~~~~~~~~~~~~~~~-----  288 (349)
T 4dep_C          248 CTVYFSFLM------------------------------DSRNEVWWTIDG----KKPDDITIDVTINESISHSR-----  288 (349)
T ss_dssp             EEEEECCCT------------------------------TCCCEEEEESSC----C--------CCCCEEEECCT-----
T ss_pred             EEEEEccCC------------------------------CCCCEEEEEECC----EEccccCCccccccceeeec-----
Confidence            775422111                              122467886421    11211    10000000000     


Q ss_pred             cccccCccEEEEcCCCCCce-EEEEEEEEcCCcc
Q psy8139         738 SPHMVEDTELMVSGLEPGWR-YQFRITAENVVGF  770 (1101)
Q Consensus       738 ~~~~~~~~~~~i~~L~p~t~-Y~~~V~A~n~~G~  770 (1101)
                      .........++|.++..... ..|.|.|.|..|.
T Consensus       289 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~  322 (349)
T 4dep_C          289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE  322 (349)
T ss_dssp             TCCEEEEECC-------------CEEEEECSSCE
T ss_pred             CCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCc
Confidence            00001123478889999999 9999999999997

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.69  E-value=3.7e-16  Score=162.46  Aligned_cols=87  Identities=25%  Similarity=0.448  Sum_probs=65.5

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccc---cccceEEEcCccCCccEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~---~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      .+|++|..+.+. ..+. +++|+|.+|..++|.++.+|.|+++..+...|.......   ....+++|.+|.|++.|.|+
T Consensus         7 ~~P~~P~~~~~~-~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   84 (209)
T 2vkw_A            7 DTPSSPSIDQVE-PYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   84 (209)
T ss_dssp             CCCCCCEEEEEE-ECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEE
T ss_pred             CCCcCCcccEee-eccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEE
Confidence            344444444433 4445 689999999777887899999999988877887653221   23568999999999999999


Q ss_pred             EEEEecCCCCCC
Q psy8139         423 ITAENVVGFSEP  434 (1101)
Q Consensus       423 c~A~n~~G~~~~  434 (1101)
                      |.|.|..|.+.+
T Consensus        85 V~A~n~~G~~~~   96 (209)
T 2vkw_A           85 LAALNGKGLGEI   96 (209)
T ss_dssp             EEEEETTEECCC
T ss_pred             EEEEcCCcccCC
Confidence            999998886643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.68  E-value=2.9e-16  Score=184.79  Aligned_cols=228  Identities=10%  Similarity=0.134  Sum_probs=142.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCC-----CC--CCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFS-----EP--GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE  477 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~-----~~--s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~  477 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|..     ..  ...+....+.+...+..+|.+...+....+..|+.++|.|.+.
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~  157 (457)
T 1hzh_H           78 TAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  157 (457)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEe
Confidence            3579999999999999999999987610     00  0112234555544444567665554445578999999999999


Q ss_pred             cc-CC-CeEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeecc-------
Q psy8139         478 GI-PT-PKVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA-------  544 (1101)
Q Consensus       478 g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~-------  544 (1101)
                      |. |. +.|+|++++..+...........++    .+.|.|.++...| |.|+|.|.|..+.......+.+..       
T Consensus       158 g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~  236 (457)
T 1hzh_H          158 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTC  236 (457)
T ss_dssp             SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSC
T ss_pred             EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCccccc
Confidence            87 64 7999999885432111111111111    2379999999989 999999999887765555444332       


Q ss_pred             ----------CCcc-ccCCCCCCCeEEeeCCEEEEEEEEeecCCC----eeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         545 ----------PPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPP----TARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       545 ----------~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~----~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                                +|.+ ..++...  ..+..|+.+.|.|.+.|.+++    .+.|++++..+........... ..+.+.+.
T Consensus       237 ~~~~~~~~~~~p~v~~~~p~~~--~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~-~~g~~~~~  313 (457)
T 1hzh_H          237 PPCPAPELLGGPSVFLFPPKPK--DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-YNSTYRVV  313 (457)
T ss_dssp             CSCCCCCCSSSCEEEEECCCHH--HHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEEC-TTSCEEEE
T ss_pred             CCCCCccccCCceEEeECcCch--hhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceec-CCCcEEEE
Confidence                      2222 1111100  013459999999999998653    9999999988754322111111 11222222


Q ss_pred             ---cCCCCC---CeEEEEEEEeCCCCceeEEEE
Q psy8139         610 ---DARRAD---RGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       610 ---~l~~~~---~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                         .+...+   .|.|+|.|.|..+.......+
T Consensus       314 ~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v  346 (457)
T 1hzh_H          314 SVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI  346 (457)
T ss_dssp             EEECCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred             EEEEECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence               133445   999999999886655444333

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.68  E-value=8.8e-16  Score=168.69  Aligned_cols=259  Identities=14%  Similarity=0.139  Sum_probs=176.1

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.|...+.+..+.+|++++|.|.+.+    .+.|++++..+    . .....+  ..|.|.++...|+|.|+|.|.|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~-~~~~~~--~~L~i~~~~~~d~G~Y~C~~~n   78 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----E-MVENKK--NEWIQEKAEATRTGTYTCSNSN   78 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----C-EEEECS--SEEEETTCCGGGCEEEEEEESS
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----e-eecCCC--ceEEEeccCHHhCeEEEEEeeC
Confidence            36788887888999999999999999988    89999988755    1 111222  5899999999999999999999


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCC-CeeEE-EECCeecCCCCceEEEeecceEEEE
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARW-LHNGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~-~~v~W-~~~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                        |. ..++.|.|..+|.+...   .....+..|+.+.|.|.+.+ |. +.+.| .++|..+..+.++....   ...|.
T Consensus        79 --g~-~~~~~l~V~~~~~~~~~---~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~---~~~L~  148 (290)
T 2o26_X           79 --GL-TSSIYVFVRDPAKLFLV---GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNP---KAGIT  148 (290)
T ss_dssp             --SC-EEEEEEEEECSSCCBCC---CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEET---TTEEE
T ss_pred             --Cc-cEEEEEEEeCCCccccc---ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCC---CCCEE
Confidence              54 66788888887765532   23467889999999999996 77 99999 46888887665554443   35799


Q ss_pred             EccCCCCCCe-EEEEEEEeCCCCce-eEEEEEEecCC-CCCCc----cEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139         608 ISDARRADRG-EYQAHGVNSLGEDV-ASFLVTVTDRP-LPPGK----AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY  680 (1101)
Q Consensus       608 i~~l~~~~~y-~y~c~A~N~~G~~~-~s~~l~v~~~P-~~P~~----~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~  680 (1101)
                      |.++...|.| .|+|.|.|..|... ....+.|...+ .+|.-    .......+..++|.|...+.+            
T Consensus       149 i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p------------  216 (290)
T 2o26_X          149 IKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS------------  216 (290)
T ss_dssp             EESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS------------
T ss_pred             EecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC------------
Confidence            9999999999 99999999855532 35677776322 22210    111334567888888853211            


Q ss_pred             EcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEE
Q psy8139         681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQF  760 (1101)
Q Consensus       681 ~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  760 (1101)
                                           ....+.|.....    .+. ..+....   ...............++|.++.......|
T Consensus       217 ---------------------~p~~i~W~~~~~----~~~-~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  267 (290)
T 2o26_X          217 ---------------------TSVNSMWLKMNP----QPQ-HIAQVKH---NSWHRGDFNYERQETLTISSARVDDSGVF  267 (290)
T ss_dssp             ---------------------TTCEEEEEEESS----SEE-ECCCEEC---CEEEEETTEEEEEEEEEESSCCSSSCEEE
T ss_pred             ---------------------cceeEEEecCCC----CCc-cceeecc---cccccCceeeEEEEEEEEcCCCcccCeEE
Confidence                                 112366764321    110 0000000   00000000012345789999999999999


Q ss_pred             EEEEEcCCcc
Q psy8139         761 RITAENVVGF  770 (1101)
Q Consensus       761 ~V~A~n~~G~  770 (1101)
                      .|.|.|..|.
T Consensus       268 ~C~a~N~~g~  277 (290)
T 2o26_X          268 MCYANNTFGS  277 (290)
T ss_dssp             EEEEECSSCE
T ss_pred             EEEEeCCCCc
Confidence            9999999996

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.68  E-value=5.6e-16  Score=162.27  Aligned_cols=171  Identities=19%  Similarity=0.279  Sum_probs=137.6

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ...+.|...|.++.+..|+++.|.|.+.+.|.+.+.|++++..+...         ....|.|.++...|+|.|+|.+.|
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n   86 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNN   86 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEc
Confidence            45677888899999999999999999999999999999999887543         234899999999999999999999


Q ss_pred             CCCce-EEEEEEeeccCC---------------ccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC
Q psy8139         530 RAGHS-ITKARLRLEAPP---------------TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG  593 (1101)
Q Consensus       530 ~~g~~-~~s~~l~V~~~p---------------~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~  593 (1101)
                      ..|.. ...+.|.|...+               .+...+   ....+..|..+.|.|.+.+.|.+.+.|++++..+....
T Consensus        87 ~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~  163 (218)
T 3k0w_A           87 NFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP---TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET  163 (218)
T ss_dssp             TTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC---CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC
T ss_pred             CCCCceeeEEEEEEEccCcccccccccccCCCceEEECC---CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC
Confidence            88765 334677776653               222222   34577889999999999999999999999998886542


Q ss_pred             ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC-ceeEEEEEEecC
Q psy8139         594 RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE-DVASFLVTVTDR  641 (1101)
Q Consensus       594 ~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~v~~~  641 (1101)
                               ...|.|.++...|.|.|+|.|.|..|. .+....|.|...
T Consensus       164 ---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          164 ---------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             ---------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             ---------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence                     347999999999999999999998887 455667777653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.68  E-value=8.2e-16  Score=172.34  Aligned_cols=259  Identities=18%  Similarity=0.154  Sum_probs=173.8

Q ss_pred             CceeEEccCCeEEEEEEEecc---------CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGI---------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTAT  528 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~---------p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~  528 (1101)
                      ..++.+.+|+++.|.|.+.+.         |.+.++|++++..+....+.  . .++  .|.|.++...|+| .|+|.|.
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~-~~~--~L~i~~v~~~D~Gs~Y~C~a~  110 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--V-KNG--DLWIANYTSNDSHRRYLCTVT  110 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--E-ETT--EEEESSCCGGGGGCCEEEEEE
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--e-ecc--eEEEcCCChHhCCCcEEEEEE
Confidence            357779999999999999884         55799999998765543332  2 222  8999999999999 9999999


Q ss_pred             eCCCceEEEEE-EeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCeecCC-CCceEEEeecceEE
Q psy8139         529 NRAGHSITKAR-LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTS-GGRYEITHTDRYLN  605 (1101)
Q Consensus       529 n~~g~~~~s~~-l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~-~~~~~~~~~~~~~s  605 (1101)
                      |..|....... +.+..+|.+..++.   ...+..|+.+.|.|.+.|.| .+.+.|++++..+.. ..++...    ...
T Consensus       111 n~~g~~~~~~~~~v~~~~p~~~~~~~---~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~----~~~  183 (329)
T 3oq3_B          111 TKNGDCVQGIVRSHIRKPPSCIPETY---ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----GQN  183 (329)
T ss_dssp             CTTSCEEEEEEEEEECCCCSCEEEEE---ETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE----TTE
T ss_pred             eCCCceeeEEEEEEEcCCCcEecccc---ceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC----CCE
Confidence            99887555433 33334444322211   11234689999999999999 999999999998863 3333332    468


Q ss_pred             EEEccCCCCCCeEEEEEEEeC--CCCceeE----EEEEEecCCCCC----CccEEEEecCCeEEEEeecCCCCCCcccce
Q psy8139         606 LRISDARRADRGEYQAHGVNS--LGEDVAS----FLVTVTDRPLPP----GKAKVVMTLGKSVTLSWSEPEDDGGCKIGN  675 (1101)
Q Consensus       606 l~i~~l~~~~~y~y~c~A~N~--~G~~~~s----~~l~v~~~P~~P----~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~  675 (1101)
                      |.|.++...|.|.|+|.|.|.  .|.....    ..+.|..+|..+    .........+..+.|.|...+.++.     
T Consensus       184 L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~-----  258 (329)
T 3oq3_B          184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL-----  258 (329)
T ss_dssp             EEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCC-----
T ss_pred             EEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCC-----
Confidence            999999999999999999997  7655443    667777665321    1223445567789999986432110     


Q ss_pred             eEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCC-CCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCC
Q psy8139         676 YIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP  754 (1101)
Q Consensus       676 Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~-~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  754 (1101)
                                               +..+.+.|...... ..... .........+         . .....++|.++..
T Consensus       259 -------------------------~~~i~v~W~~~g~~i~~~~~-~~~~~~~~~~---------~-~~~~~L~I~~v~~  302 (329)
T 3oq3_B          259 -------------------------VDDVLIDWENPSGWIIGLDF-GVYSILTSSG---------G-ITEATLYFENVTE  302 (329)
T ss_dssp             -------------------------TTCCEEEEECTTSCBCCBCS-SEEEEEEEET---------T-EEEEEEEESSCCG
T ss_pred             -------------------------CCCcEEEEEECCeeeeccCC-ceeeeecccC---------c-eeEeEEEEEeccH
Confidence                                     11246788753211 00000 0000000000         0 1346789999999


Q ss_pred             CceE-EEEEEEEcCCcc
Q psy8139         755 GWRY-QFRITAENVVGF  770 (1101)
Q Consensus       755 ~t~Y-~~~V~A~n~~G~  770 (1101)
                      .... .|.|.|.|..|.
T Consensus       303 ~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          303 EYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             GGTTCEEEEEEECSSCE
T ss_pred             HHCCCcEEEEEEecCCc
Confidence            9989 999999999996

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.68  E-value=1.4e-15  Score=156.25  Aligned_cols=86  Identities=31%  Similarity=0.617  Sum_probs=67.6

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      ++|.+|..+.+   . .++.++++|+|.+|..+++.++.+|.|+++..+...|..... .....++.+.+|.|++.|.|+
T Consensus         4 ~~P~~P~~l~~---~-~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~   78 (197)
T 3lpw_A            4 DTPGPPQDLKV---K-EVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFR   78 (197)
T ss_dssp             CSCCCCEEEEE---E-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEE-EECSSEEEECCCCTTCEEEEE
T ss_pred             CCCCCCCCcEE---E-EecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeec-CCCccEEEEcCCCCCCEEEEE
Confidence            44555544443   3 678899999999997777778999999999887777766532 245678999999999999999


Q ss_pred             EEEEecCCCCC
Q psy8139         423 ITAENVVGFSE  433 (1101)
Q Consensus       423 c~A~n~~G~~~  433 (1101)
                      |.|.|..|.+.
T Consensus        79 V~a~~~~g~~~   89 (197)
T 3lpw_A           79 VLAENEYGIGL   89 (197)
T ss_dssp             EEEEETTEECC
T ss_pred             EEEEcCccccC
Confidence            99999877653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.68  E-value=1.1e-14  Score=172.16  Aligned_cols=254  Identities=14%  Similarity=0.155  Sum_probs=152.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCC-CCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEP-GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-  481 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~-s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-  481 (1101)
                      ..+|.|.++++.|+|.|.|.+.|..|.... ...+..+.+.+......+|.+...+. ..+..|+.++|.|.+.|. |. 
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~  157 (475)
T 1iga_A           79 TAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQE  157 (475)
T ss_pred             eEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCC
Confidence            357999999999999999999997652100 01112244555433334565543332 223689999999999987 65 


Q ss_pred             C-eEEEEECCEEeecCCcEEEE-ecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceE-EEEEEeec-----------
Q psy8139         482 P-KVSWYKDGFEIFSSRRQRIV-TDND----ISTLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRLE-----------  543 (1101)
Q Consensus       482 ~-~v~W~~~g~~~~~~~~~~~~-~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~-----------  543 (1101)
                      + .|+|++++............ ..++    .+.|+|..+...|.|.|+|.|.|..|... ....+.|.           
T Consensus       158 p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~  237 (475)
T 1iga_A          158 PLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTP  237 (475)
T ss_pred             ceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccccccccc
Confidence            4 99999987532111000011 0111    13588888888999999999999887421 12232231           


Q ss_pred             -------cCCcc-ccCCCCCCCeEEeeCCEEEEEEEEeecCC---CeeEEEECCeecCCCCce--EEEeec---ceEEEE
Q psy8139         544 -------APPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSGGRY--EITHTD---RYLNLR  607 (1101)
Q Consensus       544 -------~~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p~---~~v~W~~~g~~l~~~~~~--~~~~~~---~~~sl~  607 (1101)
                             .+|.+ ..+|.   ...+..|+.+.|.|.+.|.++   +.++|  ++..+......  .....+   ..+.|.
T Consensus       238 ~~~~~~~~~p~v~~~~p~---~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~  312 (475)
T 1iga_A          238 PTPSPSCCHPRLSLHRPA---LEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLP  312 (475)
T ss_pred             ccCCCCCCCcEEEEcCCC---hHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEE
Confidence                   12222 11111   112468999999999998754   69999  44443221111  000011   256799


Q ss_pred             EccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEE------EecCCeEEEEeecC
Q psy8139         608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV------MTLGKSVTLSWSEP  665 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~------~~~~~sv~lsW~~p  665 (1101)
                      |.++...|.|.|+|.|.|..|.......+.+.....+|. +.+.      ...+..+.|.|...
T Consensus       313 I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~-v~~~~~~~~~v~~g~~~~L~C~~~  375 (475)
T 1iga_A          313 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELALNELVTLTCLAR  375 (475)
T ss_pred             EchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe-EEEECCChHHhccCCceEEEEEEe
Confidence            999999999999999999999765544454322233331 1111      12355688888853

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.68  E-value=7.8e-18  Score=196.86  Aligned_cols=309  Identities=13%  Similarity=0.133  Sum_probs=173.3

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCC-CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKP-PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  383 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~-p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y  383 (1101)
                      .+.|.|.++..+|+|.|.|.+.|..+. .+....+.|... +.+|................++|.|....   ..+. ..
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g---~~P~-p~  151 (434)
T 1igy_B           77 TANIHLSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKG---YFPE-PV  151 (434)
T ss_dssp             BBCEEECSBCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEE---EBSS-CC
T ss_pred             EEEEEECCCChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEee---ecCC-Ce
Confidence            357999999999999999999774322 233345555432 22221100000000123455666655421   0000 00


Q ss_pred             EEEEEecCCCc-e-----EEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC---------
Q psy8139         384 LVEHRRTGSPY-W-----VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS---------  448 (1101)
Q Consensus       384 ~v~~~~~~~~~-w-----~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~---------  448 (1101)
                      .+.|...+... .     ............|.|.++...| |.|+|.|.|..|...       +...+...         
T Consensus       152 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-------~~~~~~~~~~~~~v~~~  223 (434)
T 1igy_B          152 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK-------VDKKIVPRDCGCKPCIC  223 (434)
T ss_dssp             EEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC-------EEEECCCCCCCCCCCCC
T ss_pred             EEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc-------ceeeccCCCCCCccccC
Confidence            12222111100 0     0000000112468899999888 999999999887532       11111100         


Q ss_pred             -CCCCCee-eecCceeE-EccCCeEEEEEEEeccC----CCeEEEEECCEEeecCCcEEE--EecC---CeeEEEEeecC
Q psy8139         449 -PAAAPSF-IRALHDTT-ALEDEKVEFTVQVEGIP----TPKVSWYKDGFEIFSSRRQRI--VTDN---DISTLIIHQAA  516 (1101)
Q Consensus       449 -~~~~P~~-~~~p~~~~-v~~g~~v~L~C~~~g~p----~~~v~W~~~g~~~~~~~~~~~--~~~~---~~~~l~I~~l~  516 (1101)
                       ....|.+ ...|.... +..|++++|.|.+.|.+    .+.|+|++++..+........  ..++   ..+.|.|.++.
T Consensus       224 ~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  303 (434)
T 1igy_B          224 TVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD  303 (434)
T ss_dssp             CCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHH
T ss_pred             CCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHH
Confidence             0111333 33333222 78899999999999884    358999999876543211100  0011   13479999999


Q ss_pred             CCCCEEEEEEEEeCCCceEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecC
Q psy8139         517 LMDEGEIKCTATNRAGHSITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLT  590 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~  590 (1101)
                      ..|+|.|+|.|.|..|.......+    .+..+|.+...+....   ...|+.+.|.|.+.|. |. +.|+|+++|..+.
T Consensus       304 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~---~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  380 (434)
T 1igy_B          304 WLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKE---QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPE  380 (434)
T ss_dssp             HHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSS---SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCS
T ss_pred             ccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHH---HhcCCcEEEEEEEEeeECCCeEEEEEECCEecC
Confidence            999999999999998865332222    3344565533222111   2246789999999985 43 4899999998875


Q ss_pred             CCCceEE--Eeecc---eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         591 SGGRYEI--THTDR---YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       591 ~~~~~~~--~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .......  ...+.   ...|.|......+.|.|+|.|.|....
T Consensus       381 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          381 NYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             CCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             CceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            3211111  11110   234666666666799999999998654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.67  E-value=1.8e-15  Score=166.13  Aligned_cols=257  Identities=16%  Similarity=0.168  Sum_probs=175.6

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...+.++.+.+|++++|.|.+.+    .+.|++++...     ...........|.|.++...|+|.|+|.+.|.
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   73 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELED   73 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence            4566777778889999999999999987    49999765321     12222334468999999999999999999999


Q ss_pred             CCceEEEEEEeeccCCcc-ccCCCCCCCeEEeeCCEEEEEEEEeecCCCe-eEEEE-CCeecCCCCceEEEeecceEEEE
Q psy8139         531 AGHSITKARLRLEAPPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT-ARWLH-NGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~-~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                      .|.......|.|..+|.. ...+   ....+..|+.+.|.|.+.+.+.+. +.|++ ++..+..+..+.+..   ...|.
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~~~---~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~  147 (289)
T 3ejj_X           74 PMAGSTTIHLYVKDPAHSWNLLA---QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP---WRGFI  147 (289)
T ss_dssp             ----CEEEEEEECCSSCSEEESC---SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET---TTEEE
T ss_pred             CCcceeEEEEEEeCCCcceeccc---ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC---CCCEE
Confidence            888888889999887754 2222   456788999999999999877665 99986 777776666665543   45699


Q ss_pred             EccCCCCCCeEEEEEEE-eCCCCceeEEEEEEecCC-CCCCccEE-----EEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139         608 ISDARRADRGEYQAHGV-NSLGEDVASFLVTVTDRP-LPPGKAKV-----VMTLGKSVTLSWSEPEDDGGCKIGNYIVEY  680 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~-N~~G~~~~s~~l~v~~~P-~~P~~~~~-----~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~  680 (1101)
                      |.++...|.|.|+|.|. |..|..+....+.|...+ .+| .+..     ....+..+.|.|.....             
T Consensus       148 i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p-~i~~~~~~~~~~~g~~~~l~C~~~~~-------------  213 (289)
T 3ejj_X          148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPP-QIKLEPSKLVRIRGEAAQIVCSATNA-------------  213 (289)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCC-EEEEESSSEECCSSSCEEEEEEEEES-------------
T ss_pred             EeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCC-eEEecCCceEEEeCCcEEEEEEeCCC-------------
Confidence            99999999999999999 444555667778887543 233 2111     22356788888875310             


Q ss_pred             EcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc-eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL-GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       681 ~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~-~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                                          .....+.|....    ..+. .....+  .        .........+.|.++.......
T Consensus       214 --------------------~p~~~i~W~~~~----~~~~~~~~~~~--~--------~~~~~~~~~L~i~~v~~~d~G~  259 (289)
T 3ejj_X          214 --------------------EVGFNVILKRGD----TKLEIPLNSDF--Q--------DNYYKKVRALSLNAVDFQDAGI  259 (289)
T ss_dssp             --------------------SSCCEEEEEETT----EECCCCEEEEE--C--------SSSEEEEEEEEESSCCSSSCEE
T ss_pred             --------------------CCceEEEEEECC----EEeeccCCccc--c--------cceEEeeEEEEEEeecccCCEE
Confidence                                112367786531    1110 000000  0        0001234578999999999999


Q ss_pred             EEEEEEcCCcc
Q psy8139         760 FRITAENVVGF  770 (1101)
Q Consensus       760 ~~V~A~n~~G~  770 (1101)
                      |.|.|.|..|.
T Consensus       260 Y~C~a~N~~G~  270 (289)
T 3ejj_X          260 YSCVASNDVGT  270 (289)
T ss_dssp             EEEEEECSSCE
T ss_pred             EEEEEEcCCCC
Confidence            99999999997

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.67  E-value=6.8e-16  Score=161.27  Aligned_cols=187  Identities=20%  Similarity=0.256  Sum_probs=139.9

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.| ..|.++.+..|+++.|.|.+.|.|.|.+.|+++|..+...  .++.+...+....|.|.++...|.|.|+|.|.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            45666 5777889999999999999999999999999999988765  45666666667899999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee----cCCC--eeEEEECCeecCCCCceEEEeecc
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG----MPPP--TARWLHNGEPLTSGGRYEITHTDR  602 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g----~p~~--~v~W~~~g~~l~~~~~~~~~~~~~  602 (1101)
                      |..|.......|.|..+|..+....     ....+..+.+.|....    .|..  .+.|..++................
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~  171 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM  171 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence            9999998888899987765432111     2234667888887432    2222  477887764321110011111112


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCC
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL  643 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~  643 (1101)
                      ...+.|.+|.+++.|.|+|.|.|..|.+..+..+.+.++|.
T Consensus       172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            37899999999999999999999999998888777877653

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.67  E-value=9.3e-16  Score=159.93  Aligned_cols=179  Identities=15%  Similarity=0.087  Sum_probs=126.0

Q ss_pred             cCceeEEccC--CeEEEEEEEeccCCCeEEEEEC---CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         458 ALHDTTALED--EKVEFTVQVEGIPTPKVSWYKD---GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       458 ~p~~~~v~~g--~~v~L~C~~~g~p~~~v~W~~~---g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      .|..+.+.+|  ++++|.|.+.+ |.+.++|++.   +..+.....+.....+   .|.|.++...|+|.|+|.|.|..+
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCe
Confidence            4678889999  99999999987 7789999884   6555544433332222   799999999999999999998544


Q ss_pred             ceEEE-EEEeecc--CCccccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECCeecCCCCc-eEEEe-------
Q psy8139         533 HSITK-ARLRLEA--PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNGEPLTSGGR-YEITH-------  599 (1101)
Q Consensus       533 ~~~~s-~~l~V~~--~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~~-~~~~~-------  599 (1101)
                      ...+. ..|.|..  +|.+...+  ...+.+..|+++.|.|.+.|.|  .+.+.|.++|..+..... .....       
T Consensus        89 ~~~s~~~~l~v~~~~~p~~~~~~--~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~  166 (213)
T 2x1w_L           89 SYQSIMYIVVVVGYRIYDVVLSP--SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM  166 (213)
T ss_dssp             CEECCCEEEEECBCCEEEEEEES--CSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSC
T ss_pred             eEEEEEEEEEEeCCcccceEEcC--CCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccc
Confidence            43332 5666644  22222222  2344788999999999999865  457999998876532211 00000       


Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      .....+|.|.+++..|+|.|+|.|.|..|..+.++.|.|...|
T Consensus       167 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          167 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             eeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            1224679999999999999999999999999889999998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=1.5e-16  Score=179.64  Aligned_cols=183  Identities=19%  Similarity=0.279  Sum_probs=149.4

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~  528 (1101)
                      -.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|++++..+......  ......++|.|.++...|+| .|+|.|.
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEE
Confidence            36788888899999999999999999999999999999988654321110  12334568999999999999 9999999


Q ss_pred             eCCCceEEEEEEeeccCCcc-ccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee-------
Q psy8139         529 NRAGHSITKARLRLEAPPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-------  600 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-------  600 (1101)
                      |..|.....+.|.|..+|.+ ..        .+..|..+.|.|.+.|.|.|.+.|+++|..+..+........       
T Consensus       234 n~~g~~~~~~~l~V~~~P~i~~~--------~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  305 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPASVQLH--------TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET  305 (347)
T ss_dssp             ETTEECCEEECCCCBEEEEEEEC--------CCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCC
T ss_pred             cCCCCEEEEEEEEEcCCCeeeec--------cCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCc
Confidence            99999888888899888875 11        234688999999999999999999999999886544333211       


Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      ...++|.|.++...|.|.|+|.|.|..|....++.+.|..+|
T Consensus       306 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             CEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             ccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            236789999999999999999999999998888888887654

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.66  E-value=6.7e-16  Score=163.60  Aligned_cols=184  Identities=13%  Similarity=0.057  Sum_probs=114.6

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-  796 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-  796 (1101)
                      .+.+|.|+|+..+...+..... ....++++|.+|.|++.|.|+|.|.|..|.|++|....+.+.  +..|.. |.++. 
T Consensus        32 ~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~--~~~P~~-P~~l~~  107 (234)
T 3f7q_A           32 KPMGYRVKYWIQGDSESEAHLL-DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTH--QEVPSE-PGRLAF  107 (234)
T ss_dssp             CCCEEEEEEEETTSCGGGCEEE-EESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC--CCCCCC-CCCCEE
T ss_pred             ccceEEEEEEECCCCccceEEE-cCCccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcC--CCCCCC-CCccEE
Confidence            5778888888765543322221 267789999999999999999999999999888755444333  244544 44444 


Q ss_pred             -cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCC----CceeeeeccccccCC
Q psy8139         797 -ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNE----DDYDIVETNEHTGTG  871 (1101)
Q Consensus       797 -~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~----~~~~~v~~~~~~~~~  871 (1101)
                       ...++++.+.|.+|..            .++++.            .|.|.|+..+....    |....+..    ...
T Consensus       108 ~~~~~~sv~l~W~~p~~------------~~g~i~------------~Y~v~~~~~~~~~~~~~~~~~~~~~~----~~~  159 (234)
T 3f7q_A          108 NVVSSTVTQLSWAEPAE------------TNGEIT------------AYEVCYGLVNDDNRPIGPMKKVLVDN----PKN  159 (234)
T ss_dssp             EECSSSCEEEECCCCSC------------CSSCCC------------EEEEEEEEBCTTSCBSSCCEECCCSC----TTC
T ss_pred             EEecCCEEEEEEcCCCC------------CCCcee------------EEEEEEEECCCCCCccCcceEEEecC----Ccc
Confidence             4566777889987533            234555            88888876554322    22222211    111


Q ss_pred             CCCCCCCccCcccce--eeccccccc---Cc-eeecccCCCCccCCCCCChhhhhhhhhhhccccccccccchhhccc
Q psy8139         872 APSDNENESDYFPEK--TIDESVYGY---DT-IVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKV  943 (1101)
Q Consensus       872 ~~~~l~~~~~~t~Y~--V~a~n~~G~---~~-~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~vp~~~~nG~i~gY~I  943 (1101)
                      ....+.+|.+.+.|.  |+|.|..|.   +. .+...|.+++|..+|..-.+..+  +        ...+..+++|-+
T Consensus       160 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~P~~~~~~i~--~--------~~~g~~~~~~~~  227 (234)
T 3f7q_A          160 RMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIV--D--------AQSGEDYDSFLM  227 (234)
T ss_dssp             CEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCCCCCTTCCEE--E--------TTC---------
T ss_pred             eEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCCccccceeeE--E--------cccCcchheeee
Confidence            223444555999999  999999997   33 47788888889888876655544  1        234557788887

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.66  E-value=1.1e-15  Score=153.86  Aligned_cols=167  Identities=18%  Similarity=0.235  Sum_probs=131.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+..          ....|.|.++...|+|.|+|.+.
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~   74 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTN   74 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECS
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEee
Confidence            4678888888888999999999999999988776 889999987753          23389999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEE
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLR  607 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~  607 (1101)
                      |..+  +....|.|..++....++    ...+..|+.+.|.|.+.+.+++ .+.|+++|..+..        ......|.
T Consensus        75 n~~~--s~~~~l~V~~~~~~~~~~----~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~--------~~~~~~L~  140 (175)
T 1fnl_A           75 LSTL--SDPVQLEVHIGWLLLQAP----RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFH  140 (175)
T ss_dssp             SSCC--CCCEEEEEECSSEEEECS----CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEE
T ss_pred             CCcc--cccEEEEEeCCCceeeCC----CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC--------CCCCCEEE
Confidence            8554  345667776554433322    2367889999999999987664 9999999987632        12256799


Q ss_pred             EccCCCCCCeEEEEEEEeCCCC-ceeEEEEEEec
Q psy8139         608 ISDARRADRGEYQAHGVNSLGE-DVASFLVTVTD  640 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~v~~  640 (1101)
                      |.++...|.|.|+|.|.|..|. .+....|.|.+
T Consensus       141 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          141 IPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            9999999999999999997664 34466666654

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.66  E-value=3.6e-15  Score=154.38  Aligned_cols=87  Identities=28%  Similarity=0.479  Sum_probs=63.8

Q ss_pred             ccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-CceEEcCc-cccccceEEEcCccCCcc
Q psy8139         341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASP-HMVEDTELMVSGLEPGWR  418 (1101)
Q Consensus       341 v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~-~~~~~~~l~i~~L~p~d~  418 (1101)
                      +..+|.+|..+.+.    . +.++++|+|.+|. +++.+|.+|.|+++.... ..|..... .......+.+ +|.|++.
T Consensus         2 v~~~P~~P~~~~~~----~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~   74 (205)
T 1cfb_A            2 VQDVPNAPKLTGIT----C-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWAN   74 (205)
T ss_dssp             CCCCCCCCEEEEEE----E-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEE
T ss_pred             cccCCCCCCCcEEE----e-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCE
Confidence            44566666665553    5 8899999999994 566799999999987543 55754322 2234456777 9999999


Q ss_pred             EEEEEEEEecCCCCCC
Q psy8139         419 YQFRITAENVVGFSEP  434 (1101)
Q Consensus       419 y~y~c~A~n~~G~~~~  434 (1101)
                      |.|+|.|.|..|.+.+
T Consensus        75 Y~~~V~A~n~~G~~~~   90 (205)
T 1cfb_A           75 YTFRVIAFNKIGASPP   90 (205)
T ss_dssp             EEEEEEEEETTEECCC
T ss_pred             EEEEEEEEECCccCCC
Confidence            9999999998887654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.66  E-value=3.2e-16  Score=168.57  Aligned_cols=203  Identities=11%  Similarity=0.133  Sum_probs=124.8

Q ss_pred             ccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC-----CCeEEEE
Q psy8139         413 LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP-----TPKVSWY  487 (1101)
Q Consensus       413 L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~  487 (1101)
                      ++++|+|.|+|.|.   |....+     +.+.+    ..+|.+...|..+.+.+|++++|.|.+.+.|     .+.+.|+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~-----~~~~~----~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~   78 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTN-----YWMNW----LRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWL   78 (254)
T ss_dssp             ---------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhh-----hhhhe----eeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEE
Confidence            78899999999998   332211     11111    1366777778899999999999999999988     4899999


Q ss_pred             ECC--EEe------------ecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeecc---CCccc
Q psy8139         488 KDG--FEI------------FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA---PPTIR  549 (1101)
Q Consensus       488 ~~g--~~~------------~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~---~p~~~  549 (1101)
                      +++  ..+            ....++.+...++..+|.|.++...|+|.|+|.|.|..+.... ...|.|..   +|.+.
T Consensus        79 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~  158 (254)
T 2c1o_A           79 LQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVS  158 (254)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEE
T ss_pred             EeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeE
Confidence            742  211            1124666665666779999999999999999999998664322 24566653   34433


Q ss_pred             cCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCCCC--ceEEEeec-----ceEEEEEccCCCCCCeEEE
Q psy8139         550 LPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGG--RYEITHTD-----RYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       550 ~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~--~~~~~~~~-----~~~sl~i~~l~~~~~y~y~  620 (1101)
                      ..+..   .....|+.+.|.|.+.|. |. +.++|+++|..+..+.  .......+     ..+.|.|.++...|.|.|+
T Consensus       159 ~~~~~---~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~  235 (254)
T 2c1o_A          159 IFPPS---SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYT  235 (254)
T ss_dssp             EECCC---HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEE
T ss_pred             eecCC---hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEE
Confidence            21110   112247799999999984 44 5699999998876541  11111111     1467999999999999999


Q ss_pred             EEEEeCCCCc
Q psy8139         621 AHGVNSLGED  630 (1101)
Q Consensus       621 c~A~N~~G~~  630 (1101)
                      |.|.|.....
T Consensus       236 C~a~n~~~~~  245 (254)
T 2c1o_A          236 CEATHKTSTS  245 (254)
T ss_dssp             EEEECTTCSS
T ss_pred             EEEEcCCCCC
Confidence            9999987654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.66  E-value=7.3e-16  Score=158.40  Aligned_cols=170  Identities=12%  Similarity=0.061  Sum_probs=126.6

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|.. .+..|++++|.|.+.+ |.+.+.|++++..+.... ...........|.|.++...|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            56778777877 7899999999999998 678999999987654311 11111244568999999999999999999999


Q ss_pred             CCc--eEEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc-eEEEeecceE
Q psy8139         531 AGH--SITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITHTDRYL  604 (1101)
Q Consensus       531 ~g~--~~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~  604 (1101)
                      .|.  .+....|.|..   +|.+...+.    ..+..|+.++|.|.+.+. .+.+.|+++|..+..... ..........
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~~~~~~~----~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAYSKPTLSALPS----PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQA  155 (196)
T ss_dssp             TEEBCCCCCEEEEEECSSCCCEEEEESC----SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEE
T ss_pred             CcccCCCccEEEEecCCCCCCEEEeCCc----ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcce
Confidence            883  23456677754   333433222    257789999999999884 468999999987654322 1222233467


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      .|.|.++...|.|.|+|.|.|..+
T Consensus       156 ~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          156 EFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEeCCCcccCCCeEEEEEEcCCC
Confidence            899999999999999999999877

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.66  E-value=3.3e-16  Score=163.22  Aligned_cols=177  Identities=15%  Similarity=0.157  Sum_probs=134.1

Q ss_pred             cCceeEEccCCeEEEEEEEeccC----CCeEEEEE----------------CCEEeec-----CCcEEEEe---cCCeeE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP----TPKVSWYK----------------DGFEIFS-----SRRQRIVT---DNDIST  509 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~----------------~g~~~~~-----~~~~~~~~---~~~~~~  509 (1101)
                      .+..+.+.+|++++|.|.+.+.|    .+.+.|++                ++..+..     ..+..+..   ..+..+
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34567889999999999999877    46899988                3433321     23343322   123458


Q ss_pred             EEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCe-
Q psy8139         510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGE-  587 (1101)
Q Consensus       510 l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~-  587 (1101)
                      |.|.++...|+|.|+|.+.|..|.......|.|..+|.+...+..   ..+..|..+.|.|.+ .+.|.+.+.|++++. 
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~---~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~  162 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVD---GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS  162 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEE---SCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeee---cceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence            999999999999999999999998888889999988776443221   135679999999999 899999999999543 


Q ss_pred             -ecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         588 -PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       588 -~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                       .+......    ......|.|.++...|.|.|+|.|.|..|....+..|.|..+
T Consensus       163 ~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          163 QTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             CccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence             33221111    112458999999999999999999999999888888888743

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=6.1e-15  Score=149.68  Aligned_cols=165  Identities=21%  Similarity=0.340  Sum_probs=132.0

Q ss_pred             eEEccCCeEEEEEEEeccCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      ..+.+|++++|.|.+.+.|.|  .+.|++++..+......     .....|.|.  ...|+|.|+|.|.|.   ....+.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TSCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cCcEEE
Confidence            457889999999999988877  89999999888654321     223466666  688999999999983   335678


Q ss_pred             EeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEE---CCe-ecCC--CCceEEEeecceEEEEEccCC
Q psy8139         540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLH---NGE-PLTS--GGRYEITHTDRYLNLRISDAR  612 (1101)
Q Consensus       540 l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~---~g~-~l~~--~~~~~~~~~~~~~sl~i~~l~  612 (1101)
                      |.|..+|.+...+   ....+..|+.+.|.|.+.+.| .+.+.|++   ++. .+..  ..++.+...+....|.|.++.
T Consensus        78 l~V~~~P~~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  154 (184)
T 3b5h_A           78 IQLHGPPRVKAVK---SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLN  154 (184)
T ss_dssp             EEECCSCCCEESC---SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCC
T ss_pred             EEEecCCceeecC---CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecc
Confidence            8888888876555   234688899999999999999 89999999   443 4432  256777766777899999999


Q ss_pred             -CCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         613 -RADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       613 -~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                       ..|.|.|+|.|.|..|.......|.|.
T Consensus       155 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          155 MEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             TTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccccCceEEEEEEeCCCcceEEEEEEEe
Confidence             999999999999999998888888775

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.66  E-value=1.7e-15  Score=168.48  Aligned_cols=257  Identities=13%  Similarity=0.149  Sum_probs=167.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCC-----eEEEEECCEEe-------------ecCCcEEEEec-----CCeeEEEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTP-----KVSWYKDGFEI-------------FSSRRQRIVTD-----NDISTLII  512 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~-----~v~W~~~g~~~-------------~~~~~~~~~~~-----~~~~~l~I  512 (1101)
                      +..|.++.+..|++++|.|.+.+.+.+     .|.|++++...             ....++.+...     .+..+|.|
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            456777888999999999999987766     48999986421             12223332211     12347999


Q ss_pred             eecCCCCCEEEEEEEEe-CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecC
Q psy8139         513 HQAALMDEGEIKCTATN-RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLT  590 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n-~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~  590 (1101)
                      .++...|+|.|+|.+.+ ..|.....+.|.+..+|.+...+.   ...+..+....+.|.+. +.|.+.+.|++++..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~---~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~  160 (313)
T 4fqp_A           84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ---KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP  160 (313)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEEC---CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             CcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceeccc---ceEeecCceEEEEEEccCccCCcEEEeecCCcccc
Confidence            99999999999998865 445566677888888776654332   22455677888899765 78999999999987765


Q ss_pred             CCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCceeEE--EEEEecCCCC---CCccEEEEecCCeEEEEe
Q psy8139         591 SGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDVASF--LVTVTDRPLP---PGKAKVVMTLGKSVTLSW  662 (1101)
Q Consensus       591 ~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~--~l~v~~~P~~---P~~~~~~~~~~~sv~lsW  662 (1101)
                      ..........+.   .+.|.|......|.|.|+|.|.|..|......  .+.|..+|..   +... .....+..++|+|
T Consensus       161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~-~~~~~g~~v~l~C  239 (313)
T 4fqp_A          161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDN-NWYLGQNEATLTC  239 (313)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCS-CEETTCCCEEEEE
T ss_pred             ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccc-eeecCCCeEEEEE
Confidence            322211111111   34688888989999999999999888765544  3334333310   0010 1123456788888


Q ss_pred             ecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccccc
Q psy8139         663 SEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV  742 (1101)
Q Consensus       663 ~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~  742 (1101)
                      ...+.                                 +.-..+.|...    |.++..           . .     ..
T Consensus       240 ~~~g~---------------------------------P~p~~v~W~~~----~~~l~~-----------~-~-----~~  265 (313)
T 4fqp_A          240 DARSN---------------------------------PEPTGYNWSTT----MGPLPP-----------F-A-----VA  265 (313)
T ss_dssp             EEEEE---------------------------------SCCCEEEEEET----TBSCCT-----------T-E-----EE
T ss_pred             EecCC---------------------------------CCCcEEEEEEC----CEECCC-----------c-e-----EE
Confidence            75211                                 11124667642    111110           0 0     02


Q ss_pred             CccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         743 EDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       743 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      ....++|.++.......|.|.|.|..|.
T Consensus       266 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  293 (313)
T 4fqp_A          266 QGAQLLIRPVDKPINTTLICNVTNALGA  293 (313)
T ss_dssp             ETTEEEECCCSSCCEEEEEEEEECSSCE
T ss_pred             eCCEEEECcCChhhCEEEEEEEEeCCCc
Confidence            3457899999999999999999999996

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.66  E-value=1.2e-15  Score=177.82  Aligned_cols=116  Identities=22%  Similarity=0.204  Sum_probs=85.7

Q ss_pred             cccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecC
Q psy8139         312 NQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG  391 (1101)
Q Consensus       312 ~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~  391 (1101)
                      |....+.|.|.|++.|..|...+++.......+|++|..+..     .++.++++|+|.+|...||.++.+|.|+++..+
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~-----~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~  375 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTA-----VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCW  375 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEE-----ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEEC
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccceEE-----EecCCEEEEEEeCCcCCCCCceeEEEEEEEecc
Confidence            445678899999999999988777666666677777766633     577899999999998778878999999998632


Q ss_pred             C--CceEEc--------CccccccceEEEcCccCCccEEEEEEEEecCCCC
Q psy8139         392 S--PYWVRA--------SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  432 (1101)
Q Consensus       392 ~--~~w~~~--------~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~  432 (1101)
                      .  ..|...        ........+++|.+|.|++.|.|+|.|.|..|.+
T Consensus       376 ~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~  426 (536)
T 3fl7_A          376 PESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGL  426 (536)
T ss_dssp             C-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGG
T ss_pred             CCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCC
Confidence            1  122211        1111345778899999999999999998876643

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.66  E-value=2.4e-14  Score=164.40  Aligned_cols=395  Identities=15%  Similarity=0.126  Sum_probs=223.7

Q ss_pred             hhhhhhcccccCcceEEEeeecccccccccc-eeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCC-CcCeeEE
Q psy8139         306 AKKTADNQFENQAPLYVRLEEAITGLNVGTD-LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGY  383 (1101)
Q Consensus       306 ~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~-~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g-~~~i~~Y  383 (1101)
                      ..+.|..+..+|  ++.|+- ...+.+...+ +.+.....-..|..|..|....+....++.|+|......- ...-..|
T Consensus        45 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~  121 (483)
T 3e0g_A           45 TSIKIPALSHGD--YEITIN-SLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIW  121 (483)
T ss_dssp             SBCCEECCSSSC--CCEEEE-CSSCC----CCCEECCSCCEECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEE
T ss_pred             cceEeecCCccc--eEEEEc-ccCCCCCCceeEEEEcccceeccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEE
Confidence            346677788888  555544 2333333322 4333334334555666665554556689999998752110 1123467


Q ss_pred             EEEEEecCCCc--eEEcCccc--cccceE--E-EcCc-cCCccEEEEEEEE-e---cCCCCCCCCCCcceEEEeccCCCC
Q psy8139         384 LVEHRRTGSPY--WVRASPHM--VEDTEL--M-VSGL-EPGWRYQFRITAE-N---VVGFSEPGPLSEPLTVTYQRSPAA  451 (1101)
Q Consensus       384 ~v~~~~~~~~~--w~~~~~~~--~~~~~l--~-i~~L-~p~d~y~y~c~A~-n---~~G~~~~s~~s~~vtv~~~~~~~~  451 (1101)
                      .|+........  |.......  ..++.+  + -++| -+...+..++++. +   ..|.+.+|.+|..-++...  ...
T Consensus       122 ~i~i~r~~~~~~v~~~~~~~~~~~~~~~~~w~w~s~~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~--~~~  199 (483)
T 3e0g_A          122 EIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWI--PDS  199 (483)
T ss_dssp             EEEEESSSSCEEEEEEEEEECGGGCCEEEEEEEECSSCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCC--CCS
T ss_pred             EEEEEEcCCccEEEEEEEEEEecCCCceEEEEecCCCCCCCCccEEEEEEEecccccCCCCCCcCCCChhhcccc--CCC
Confidence            77765544332  32211111  111111  1 1222 3567788888887 3   3566677888766655332  112


Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCC--CCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM--DEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~--d~g~Y~C~a~n  529 (1101)
                      .+  ...|.+..+..|+++++.|.....   .....     +................+++.|++..  ....|.|... 
T Consensus       200 ~~--~ifP~~~vv~~GS~vt~~Ci~~~~---~~~~~-----l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~-  268 (483)
T 3e0g_A          200 QT--KVFPQDKVILVGSDITFCCVSQEK---VLSAL-----IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE-  268 (483)
T ss_dssp             SC--CEESCSEEEETTCCEEEEECCSSC---EEEEE-----SSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES-
T ss_pred             Cc--EEeccCCEEeCCCCEEEEEEeCcc---cccee-----cCcccceeEEecCCEEEEEEeCCCCccCccceEEEecC-
Confidence            22  567888889999999999987631   12221     22111111223445568888888763  3356889742 


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeec---CCCCceEEEe-------
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITH-------  599 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l---~~~~~~~~~~-------  599 (1101)
                         .....+.|.|..||..+                ..+.|.........++|.......   .....|.+..       
T Consensus       269 ---~~~~g~~l~vg~PP~~P----------------~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~~~  329 (483)
T 3e0g_A          269 ---DNIFGTVIFAGYPPDTP----------------QQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYV  329 (483)
T ss_dssp             ---SCEEEEEEEEECCCCCC----------------EEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCCEE
T ss_pred             ---CcccceEEECcCCCCCC----------------CccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCCCc
Confidence               23445667777766322                223343333333334443311110   0011111110       


Q ss_pred             --------ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe--cCCCCCCccEEEEecCCeEEEEeecCCCCC
Q psy8139         600 --------TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPEDDG  669 (1101)
Q Consensus       600 --------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~  669 (1101)
                              .+....+.|.++.+.+.|.|+|.|.|..|.......+.+.  ..|.||.++.+.....+++.|+|++|..  
T Consensus       330 ~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~--  407 (483)
T 3e0g_A          330 RLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGN--  407 (483)
T ss_dssp             EECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEEEEEEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSC--
T ss_pred             cccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcccceEEEeccccCCCCCeeeEEEEecCCeEEEEECCCCC--
Confidence                    1234578888999999999999999999987754322222  4688888887765556666666665531  


Q ss_pred             CcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC-ceeecccc--cCccE
Q psy8139         670 GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM--VEDTE  746 (1101)
Q Consensus       670 g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~-~~~~~~~~--~~~~~  746 (1101)
                                                                   .++.+..|.|.|+..+... |.......  ....+
T Consensus       408 ---------------------------------------------~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s  442 (483)
T 3e0g_A          408 ---------------------------------------------FAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYL  442 (483)
T ss_dssp             ---------------------------------------------CTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCC
T ss_pred             ---------------------------------------------CCCceEEEEEEEEECCCCCceEEEEEeccCCceeE
Confidence                                                         1234678999998876643 54432211  12336


Q ss_pred             EEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         747 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       747 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      ++|.+|.|++.|.|+|+|. ..|.|.+|+++......
T Consensus       443 ~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~  478 (483)
T 3e0g_A          443 VALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHL  478 (483)
T ss_dssp             CCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCC
T ss_pred             EEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeE
Confidence            7899999999999999999 77887777777655443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.64  E-value=8.4e-15  Score=163.96  Aligned_cols=271  Identities=12%  Similarity=0.123  Sum_probs=160.5

Q ss_pred             eeeecCceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEe----ec-----CCcEEEEec-----CCeeEEEEeecCCC
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEI----FS-----SRRQRIVTD-----NDISTLIIHQAALM  518 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~----~~-----~~~~~~~~~-----~~~~~l~I~~l~~~  518 (1101)
                      .+...|.++.+.+|+++.|.|.+.+. |.+.+.|++++...    ..     ..++.....     .....|.|.++...
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA   84 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence            45566788899999999999999987 88999999986421    11     113332211     34458999999999


Q ss_pred             CCEEEEEEEEeCCCceE-----EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC--eeEEEECCeecCC
Q psy8139         519 DEGEIKCTATNRAGHSI-----TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLTS  591 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g~~~-----~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~--~v~W~~~g~~l~~  591 (1101)
                      |+|.|+|.|.|..|...     ..+.|.|..+|..+....  ....+..|+.+.|.|.+.|.|.+  .+.|+++|..+..
T Consensus        85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~--~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG--PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC--CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec--cccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            99999999999876421     235777776554321110  11356779999999999998765  8999999998875


Q ss_pred             CCceEEEe-ec----ceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEe-cCCCCCCccEEE---EecCCeEEEE
Q psy8139         592 GGRYEITH-TD----RYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTVT-DRPLPPGKAKVV---MTLGKSVTLS  661 (1101)
Q Consensus       592 ~~~~~~~~-~~----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~-~~P~~P~~~~~~---~~~~~sv~ls  661 (1101)
                      ........ .+    ....|.|......+.|.|+|.|.|..|.. .......+. ....+|. +.+.   ...+..++|.
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~-i~~~~~~~~~G~~v~l~  241 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPT-LEVTQQPVRAENQVNVT  241 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCE-EEEEEECCSSTTCCEEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCE-EEEecCCcCCCCcEEEE
Confidence            33211111 00    12357777666667899999999998874 222222221 1223332 2221   1246677888


Q ss_pred             eecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccc-
Q psy8139         662 WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH-  740 (1101)
Q Consensus       662 W~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~-  740 (1101)
                      |...+.                                .+..+.+.|...    |.++..-     ...  ........ 
T Consensus       242 C~~~g~--------------------------------~p~~~~v~W~k~----g~~l~~~-----~~~--~~~~~~~g~  278 (327)
T 2wng_A          242 CQVRKF--------------------------------YPQRLQLTWLEN----GNVSRTE-----TAS--TVTENKDGT  278 (327)
T ss_dssp             EEEEEE--------------------------------BSSCEEEEEEET----TEEEEEE-----ECC--SCEECTTSC
T ss_pred             EEEccc--------------------------------cCCCcEEEEEEC----CeEccCc-----ccC--ceEECCCCc
Confidence            875310                                112356788742    2222111     000  00000000 


Q ss_pred             ccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         741 MVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       741 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                      ......+.|....+.....|.|.|.|..|.
T Consensus       279 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~  308 (327)
T 2wng_A          279 YNWMSWLLVNVSAHRDDVKLTCQVEHDGQP  308 (327)
T ss_dssp             EEEEEEEEC-------CCEEEEEEEETTCC
T ss_pred             EEEEEEEEEccccccCCCEEEEEEEeCCCC
Confidence            000134677777888889999999999985

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.64  E-value=2.8e-16  Score=163.13  Aligned_cols=172  Identities=18%  Similarity=0.312  Sum_probs=133.1

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEee------------cCCcEEEEecCCeeEEEEeecCCCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF------------SSRRQRIVTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d  519 (1101)
                      ++.+...|..+.+.+|+++.|.|.+.+.|.+.+.|++++..+.            ...++.+..    ..|.|.++...|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHH
Confidence            4556667778889999999999999999999999999764321            122333322    489999999999


Q ss_pred             CEEEEEEEEeCCCc--eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCce-
Q psy8139         520 EGEIKCTATNRAGH--SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRY-  595 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g~--~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~-  595 (1101)
                      +|.|+|.+.|..|.  ......|.|..+|.+...+.   ...+..|+.+.|.|.+ .+.|.+.+.|++++..+...... 
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~  156 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI---PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST  156 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC---BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSS
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc---ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccc
Confidence            99999999998763  33467788888877654433   3367889999999997 89999999999999887654321 


Q ss_pred             ------EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         596 ------EITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       596 ------~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                            ..........|.|.++...|.|.|+|.|.|..|..
T Consensus       157 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             SSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence                  11122245689999999999999999999999987

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.64  E-value=5.3e-16  Score=159.93  Aligned_cols=175  Identities=20%  Similarity=0.276  Sum_probs=133.1

Q ss_pred             eecCceeEEccCCeEEEEEE-EeccCC-CeEEEEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQ-VEGIPT-PKVSWYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~-~~g~p~-~~v~W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ...+..+.+.+|+++.|.|. +.+.|. +.+.|++++..+..  .........  ...|.|.++...|+|.|+|.+.|..
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT--NGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcC--CCeEEECcCCcccCeEEEEEEEecC
Confidence            34457788999999999999 889998 99999999876642  222222222  3479999999999999999999977


Q ss_pred             CceEEE---EEEeec-------cCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec
Q psy8139         532 GHSITK---ARLRLE-------APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD  601 (1101)
Q Consensus       532 g~~~~s---~~l~V~-------~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~  601 (1101)
                      +.....   ..+.+.       .+|.+...+   ....+..|..+.|.|.+.+.|.+.+.|++++..+.....  +.  .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~--~  162 (201)
T 3s97_C           90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQF---KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE--IS--T  162 (201)
T ss_dssp             GTEEEECCCEEEEEECCSSCCCEEEEEEEEC---CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCE--EE--T
T ss_pred             CCcchhhcccceeeccccccCCCCCceEecC---CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCcee--ec--C
Confidence            665442   233332       233333222   245788899999999999999999999999987765422  22  2


Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      ....|.|.++...|.|.|+|.|.|..|....+..|.|.
T Consensus       163 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            25689999999999999999999999998888888775

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.64  E-value=1.4e-15  Score=158.34  Aligned_cols=190  Identities=12%  Similarity=0.100  Sum_probs=127.0

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      ||.+|.++.+...+.+++.|+|++|..+.                                           .+.++++.
T Consensus         4 P~~~P~~l~~~~~~~~si~l~W~~p~~~~-------------------------------------------~~~~~~i~   40 (211)
T 3p4l_A            4 PMMPPVGVQASILSHDTIRITWADNSLPK-------------------------------------------HQKITDSR   40 (211)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECTTSCT-------------------------------------------TCCCCSSC
T ss_pred             CCCCCCCEEEEecCCCeEEEEEeCCCCCc-------------------------------------------ccccCCCc
Confidence            55778888887777788888887664321                                           12345688


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cc
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--AL  798 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~  798 (1101)
                      +|.|+|+..+...|..... ....++++|.+|.|++.|.|+|.|.|..|.|++|....+.+.  +..|+.+|.++.  ..
T Consensus        41 ~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~--~~~P~~~P~~~~~~~~  117 (211)
T 3p4l_A           41 YYTVRWKTNIPANTKYKNA-NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF--ELVPTSPPKDVTVVSK  117 (211)
T ss_dssp             EEEEEEEECC---CCCEEE-EESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECC--CCCCCSCCEEEEEEEE
T ss_pred             EEEEEEEECCCCcceEEEe-CCCceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecc--cCCCCCCCcceEEEec
Confidence            9999998876544433222 267789999999999999999999999999888765444433  367777887776  22


Q ss_pred             --cccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCC--CCceeeeeccccccCCCCC
Q psy8139         799 --HDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDN--EDDYDIVETNEHTGTGAPS  874 (1101)
Q Consensus       799 --~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~--~~~~~~v~~~~~~~~~~~~  874 (1101)
                        +++++.+.|.||...            ++++.            .|.|.|+..+...  .|....+.     +.....
T Consensus       118 ~~s~~sv~l~W~~p~~~------------~g~i~------------~Y~v~~~~~~~~~~~~~~~~~~~-----~~~~~~  168 (211)
T 3p4l_A          118 EGKPKTIIVNWQPPSEA------------NGKIT------------GYIIYYSTDVNAEIHDWVIEPVV-----GNRLTH  168 (211)
T ss_dssp             TTEEEEEEEEEECCTTC------------CSCCC------------EEEEEEESCTTSCGGGSEEEEEE-----SSCSEE
T ss_pred             CCCCCEEEEEECCCCCC------------CCCEE------------EEEEEEEECCCCCCCceEEEEec-----CCeeEE
Confidence              256778899875433            34555            8888888665433  24333332     222233


Q ss_pred             CCCCccCcccce--eeccccccc---CceeecccCC
Q psy8139         875 DNENESDYFPEK--TIDESVYGY---DTIVYGYDSD  905 (1101)
Q Consensus       875 ~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e  905 (1101)
                      .+.+|.+.+.|.  |+|.|..|.   +..+...+.+
T Consensus       169 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~  204 (211)
T 3p4l_A          169 QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK  204 (211)
T ss_dssp             EECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC-
T ss_pred             EEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCcc
Confidence            344455999999  999999997   6666655544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.64  E-value=7.6e-16  Score=158.25  Aligned_cols=170  Identities=12%  Similarity=0.041  Sum_probs=116.8

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.|...|.. .+.+|++++|.|.+.+.|. .+.|++++..+..... ..........|.|.++...|+|.|+|.|.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            56777777764 7889999999999998876 9999999876532110 0011344568999999999999999999998


Q ss_pred             CCceE--EEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCce-EEE-eecce
Q psy8139         531 AGHSI--TKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-EIT-HTDRY  603 (1101)
Q Consensus       531 ~g~~~--~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~-~~~-~~~~~  603 (1101)
                      .|...  ....|.|..   +|.+...+    ...+..|+.++|.|.+.+.| +.+.|+++|..+...... ... .....
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~  155 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALP----SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQ  155 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC---------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEE
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccC----CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCce
Confidence            77543  346777766   34443332    13577899999999999998 999999999876432111 111 11235


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      ..|.|.++...|.|.|+|.|.|..+
T Consensus       156 ~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          156 ALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             eEEEeeecCcccCeeEEEEEEccCC
Confidence            7899999999999999999999765

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.64  E-value=4.5e-15  Score=154.82  Aligned_cols=159  Identities=14%  Similarity=0.128  Sum_probs=111.6

Q ss_pred             CCcceEEEEEEeCCC-CCceeecc-----------cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecC
Q psy8139         717 SPVLGYLVEHRRTGS-PYWVRASP-----------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY  784 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~-~~~~~~~~-----------~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~  784 (1101)
                      +++.+|.|+|+..+. ..|..+..           .....++++|.+|.|++.|.|+|.|.|..|.|.+|..+..+++..
T Consensus        30 ~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~  109 (214)
T 2ibg_A           30 LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP  109 (214)
T ss_dssp             CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCC
T ss_pred             CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEecc
Confidence            357778888777543 56765442           113567889999999999999999999999988887666554431


Q ss_pred             --CCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCcee
Q psy8139         785 --QRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYD  860 (1101)
Q Consensus       785 --~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~  860 (1101)
                        ...|+.+|.++.  ...++++.+.|.++..           ..++++.            +|.|.|+..+....|...
T Consensus       110 ~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~-----------~~~~~i~------------~Y~v~~~~~~~~~~~~~~  166 (214)
T 2ibg_A          110 GAALDPMPVPELLEIEEYSETAVVLHWSLASD-----------ADEHLIT------------GYYAYYRPSSSAGEYFKA  166 (214)
T ss_dssp             STTSCCCCCCEECCCBCCSSSCEEEEEECCTT-----------CCGGGCC------------EEEEEEEETTCCSCCEEE
T ss_pred             CcCCCCCCCCcccEEEEccCCeEEEEEeCCCc-----------cCCCCcc------------eEEEEEEECCCCcceEEe
Confidence              234555676665  4556678889987531           3345666            899999887765677766


Q ss_pred             eeec---cccccCCCCCCCCCccCcccce--eeccccccc---CceeecccCC
Q psy8139         861 IVET---NEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSD  905 (1101)
Q Consensus       861 ~v~~---~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e  905 (1101)
                      .+..   ..+.+.+|.       +.+.|.  |+|.|..|.   +..+...|.+
T Consensus       167 ~~~~~~~~~~~i~~L~-------p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  212 (214)
T 2ibg_A          167 TIEGAHARSFKIAPLE-------TATMYEFKLQSFSAASASEFSALKQGRTQR  212 (214)
T ss_dssp             EEECTTCCEEEECSCC-------TTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             eccCCcceEEEeCCCC-------CCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence            5533   334444454       999999  999999997   6666666654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.64  E-value=5.8e-15  Score=152.20  Aligned_cols=178  Identities=17%  Similarity=0.141  Sum_probs=125.7

Q ss_pred             CceeE-EccCCeEEEEEEEeccCCCeEEEEECC-EEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         459 LHDTT-ALEDEKVEFTVQVEGIPTPKVSWYKDG-FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       459 p~~~~-v~~g~~v~L~C~~~g~p~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      |.+.. +.+|++++|.|.+.|.|.|.+.|++.. .++.  .  .....+....|.|.++...|+|.|.|.|.|..|....
T Consensus         7 p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A            7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            44444 459999999999999999999999843 1111  1  1222344557999999999999999999999888777


Q ss_pred             EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCC---CeeEEEECCeecCCCCceEE----EeecceEEEEEc
Q psy8139         537 KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSGGRYEI----THTDRYLNLRIS  609 (1101)
Q Consensus       537 s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~---~~v~W~~~g~~l~~~~~~~~----~~~~~~~sl~i~  609 (1101)
                      .+.|.|..+|.......   ...+..|+.++|.|.+.+.++   +.++|++++..+........    ........|.|.
T Consensus        83 ~~~l~V~~~p~~~~~~~---~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~  159 (202)
T 1vca_A           83 GIQVEIYSFPKDPEIHL---SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT  159 (202)
T ss_dssp             EEEEEEEBCCSCCEEEE---SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC
T ss_pred             EEEEEEEeCCCCCEeCC---ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEE
Confidence            88899988765322111   135788999999999998643   47999999987643210000    001113456788


Q ss_pred             cCCCCCCeEEEEEEEeCCCCc-------eeEEEEEEecCCC
Q psy8139         610 DARRADRGEYQAHGVNSLGED-------VASFLVTVTDRPL  643 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~-------~~s~~l~v~~~P~  643 (1101)
                      .....+.|.|+|.|.|..|..       ..+..|.|..+|.
T Consensus       160 ~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          160 PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            888888999999999998863       3456677776553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=166.56  Aligned_cols=259  Identities=14%  Similarity=0.153  Sum_probs=174.2

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.|...+.++.+.+|++++|.|.+.+.    +.|++++.     ........+..+.|.|.++...|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   73 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPS-----PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGD   73 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCC-----SSCEECCBTTEEEEEESSCCGGGCSCEEECCCC-
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCC-----CceEEeccCceEEEEEcccccccCEEEEEEEccC
Confidence            57888888888999999999999999884    89986543     2233334455679999999999999999999998


Q ss_pred             CCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCC-CeeEEEEC-CeecCCCCceEEEeecceEEEEE
Q psy8139         531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARWLHN-GEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~-~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      .|.....+.|.|..+|.....  ......+..|+.+.|.|.+.+.+. +.+.|+++ +..+..+..+....   ...|.|
T Consensus        74 ~~~~~~~~~l~V~~~~~~~~~--~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i  148 (292)
T 4dkd_C           74 PLGGSAAIHLYVKDPARPWNV--LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP---WHGFTI  148 (292)
T ss_dssp             ---CCEEECCEECCSSCCEEE--SCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCS---SSCCEE
T ss_pred             CCCcceEEEEEEcCccccccc--cCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccC---CceEEE
Confidence            888888888888887753221  123457889999999999998332 78999987 55555544444332   334999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCce-eEEEEEEecCCC-CCCccEE-----EEecCCeEEEEeecCCCCCCcccceeEEEEE
Q psy8139         609 SDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRPL-PPGKAKV-----VMTLGKSVTLSWSEPEDDGGCKIGNYIVEYF  681 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~~~-~s~~l~v~~~P~-~P~~~~~-----~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~  681 (1101)
                      .++...|.|.|+|.|.|..|... ....+.|...+. +| .+..     ....+..+.|.|.....              
T Consensus       149 ~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p-~i~~~~~~~~~~~g~~v~l~C~~~~~--------------  213 (292)
T 4dkd_C          149 HRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPP-ALTLVPAELVRIRGEAAQIVCSASSV--------------  213 (292)
T ss_dssp             TTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSC-EEEEESSCBCCCSSSCEEEEEEEEES--------------
T ss_pred             CCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCC-eEEccCCceeEecCCCEEEEEEecCC--------------
Confidence            99999999999999999877653 377788876332 33 1111     11356678888875310              


Q ss_pred             cCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139         682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       682 ~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                                         +..+.+.|......  -.+... ..+.          .........++|.++.......|.
T Consensus       214 -------------------~~~~~~~w~~~~~~--~~~~~~-~~~~----------~~~~~~~~~L~i~~v~~~d~G~Y~  261 (292)
T 4dkd_C          214 -------------------DVNFDVFLQHNNTK--LAIPQQ-SDFH----------NNRYQKVLTLNLDQVDFQHAGNYS  261 (292)
T ss_dssp             -------------------SSCCEEECCBSSCC--CCCCBE-EEEE----------TTEEEEEEEEEESSCCTTSCEEEE
T ss_pred             -------------------CCceEEEEeCCCcc--cccCcc-ceec----------cceeeeEEEEEECccChhcCeEEE
Confidence                               11234566532110  001000 0000          000012357899999999999999


Q ss_pred             EEEEcCCcc
Q psy8139         762 ITAENVVGF  770 (1101)
Q Consensus       762 V~A~n~~G~  770 (1101)
                      |.|.|..|.
T Consensus       262 C~a~N~~g~  270 (292)
T 4dkd_C          262 CVASNVQGK  270 (292)
T ss_dssp             EEEECSSCE
T ss_pred             EEEecCCCC
Confidence            999999997

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.63  E-value=2.5e-15  Score=156.19  Aligned_cols=159  Identities=20%  Similarity=0.252  Sum_probs=106.8

Q ss_pred             EEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccc---ccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH---MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       705 ~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .|+|++|..++|.+|.+|.|+|+..+...|......   ....++++|.+|.|++.|.|+|.|.|..|.|++|....+.+
T Consensus        25 ~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T  104 (209)
T 2vkw_A           25 QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT  104 (209)
T ss_dssp             EEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             EEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccc
Confidence            333333434444568899999998887788765431   13457999999999999999999999999988876655443


Q ss_pred             ecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCce
Q psy8139         782 VTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDY  859 (1101)
Q Consensus       782 ~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~  859 (1101)
                      ..  ..+|.+|..+.  ...++++.+.|.+|.            ..++++.            .|.|.|+.  .+..|..
T Consensus       105 ~~--~~~P~~P~~~~~~~~~~~sv~l~W~~p~------------~~~~~i~------------~Y~v~~~~--~~~~~~~  156 (209)
T 2vkw_A          105 QP--VREPSAPKLEGQMGEDGNSIKVNLIKQD------------DGGSPIR------------HYLVRYRA--LSSEWKP  156 (209)
T ss_dssp             CC--SCSCCCCEEEEEECTTSSCEEEEEECCC------------CTTSCCC------------EEEEEEEE--TTSCCCC
T ss_pred             cC--CCCCCCCcccccccccCCeEEEEEECcc------------cCCCCCc------------eEEEEEEC--CCCCCce
Confidence            32  32444555543  456678888998752            3345666            89998887  3444543


Q ss_pred             eeeeccccccCCCCCCCCCccCcccce--eeccccccc
Q psy8139         860 DIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       860 ~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                      ....    ........+.+|.+.+.|.  |+|.|..|.
T Consensus       157 ~~~~----~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  190 (209)
T 2vkw_A          157 EIRL----PSGSDHVMLKSLDWNAEYEVYVVAENQQGK  190 (209)
T ss_dssp             CEEE----CTTCCEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred             eeec----CCCccEEEecCCCCCCEEEEEEEEEeCCcc
Confidence            2221    1111223344555999999  999999998

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.63  E-value=1.5e-15  Score=152.96  Aligned_cols=169  Identities=18%  Similarity=0.182  Sum_probs=130.0

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|..+.+.+|++++|.|.+.+.|.+ .+.|++++..+..          ....|.|.++...|+|.|+|.+.|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEcCC
Confidence            56778888888899999999999999998886 6999999987753          234899999999999999999988


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      ..+.  ....|.|..++.....+    ...+..|+.+.|.|.+. +.|.+.+.|+++|..+...        .....|.|
T Consensus        73 ~~~s--~~~~l~V~~~~~~~~~~----~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i  138 (176)
T 1f2q_A           73 VNES--EPVYLEVFSDWLLLQAS----AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW--------YENHNISI  138 (176)
T ss_dssp             SSCC--CCEEEEEECSSEEEEES----CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC--------CCSSEEEE
T ss_pred             cccc--ccEEEEEeCcceeecCC----cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee--------cCCCeEEE
Confidence            6553  34566666544433222    23677899999999995 5667899999999887432        12568999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCC-ceeEEEEEEecCCC
Q psy8139         609 SDARRADRGEYQAHGVNSLGE-DVASFLVTVTDRPL  643 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~v~~~P~  643 (1101)
                      .++...|.|.|+|.|.|..|. .+....+.|..+|.
T Consensus       139 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          139 TNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            999999999999999997443 44567888887764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.63  E-value=4.6e-17  Score=190.34  Aligned_cols=251  Identities=12%  Similarity=0.155  Sum_probs=155.8

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~-  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+..     +....+.+......+|.+...+....+..|+.++|.|.+.|. |.+ 
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-----~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~  151 (434)
T 1igy_B           77 TANIHLSSLTSDDSAVYYCVREGEVPYW-----GQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV  151 (434)
T ss_dssp             BBCEEECSBCGGGCSEECCCCSSSSCCC-----CCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCC
T ss_pred             EEEEEECCCChHHCEEEEEEEEcccccc-----CCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCe
Confidence            3579999999999999999998853321     122444444333345555433333345789999999999886 766 


Q ss_pred             eEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeecc---------C---Cc
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA---------P---PT  547 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~---------~---p~  547 (1101)
                      .|+|++++..+...........+   ..+.|.|.++...| |.|+|.|.|..|.......+.+..         .   |.
T Consensus       152 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~  230 (434)
T 1igy_B          152 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSS  230 (434)
T ss_dssp             EEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCC
T ss_pred             EEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcE
Confidence            99999988643110000000011   12368999999888 999999999998865555544321         0   22


Q ss_pred             c-ccCCCCCCCeEEeeCCEEEEEEEEeecC----CCeeEEEECCeecCCCCceEEE--ee---cceEEEEEccCCCCCCe
Q psy8139         548 I-RLPKQYEDGLLFEMGEIIKLKVSMAGMP----PPTARWLHNGEPLTSGGRYEIT--HT---DRYLNLRISDARRADRG  617 (1101)
Q Consensus       548 ~-~~~~~~~~~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~g~~l~~~~~~~~~--~~---~~~~sl~i~~l~~~~~y  617 (1101)
                      + ..+|...  ..+..|+.+.|.|.+.|.+    .+.++|++++..+.........  ..   ...+.|.|.++...|.|
T Consensus       231 v~~~~p~~~--~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  308 (434)
T 1igy_B          231 VFIFPPKPK--DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK  308 (434)
T ss_dssp             EEEECCCHH--HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTC
T ss_pred             EEEeCCChH--HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCC
Confidence            2 1122100  0156799999999999884    4689999998776432111110  01   11356889999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEE-ecCCCCCCccEEEE-----ecCCeEEEEeec
Q psy8139         618 EYQAHGVNSLGEDVASFLVTV-TDRPLPPGKAKVVM-----TLGKSVTLSWSE  664 (1101)
Q Consensus       618 ~y~c~A~N~~G~~~~s~~l~v-~~~P~~P~~~~~~~-----~~~~sv~lsW~~  664 (1101)
                      .|+|.|.|..|.......+.+ ...+.+|. +.+..     ..+..++|.|..
T Consensus       309 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~-v~~~~~~~~~~~~~~~~L~C~~  360 (434)
T 1igy_B          309 EFKCRVNSAAFPAPIEKTISKTKGKPRAPQ-VYTIPPPKEQMAKDKVSLTCMI  360 (434)
T ss_dssp             CCBCCBCCSSCSSCCCCCCCCCCSCCBCCC-CEEECCCSSSSSSSEEEEEEEE
T ss_pred             cEEEEEECCCCCCceeEEEeccCCCCcCCE-EEEECCCHHHhcCCcEEEEEEE
Confidence            999999999987533333322 12222332 22211     234568888874

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.62  E-value=3.4e-14  Score=169.15  Aligned_cols=314  Identities=11%  Similarity=0.073  Sum_probs=174.0

Q ss_pred             hhhhhhhcccccCcceEEEeeecccc----------c--ccccceeeeccCCCCCCCCCccc--C-CCC-CCCCCeeEEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITG----------L--NVGTDLYCVIKKPPGPPGKPQLL--P-DSP-SLDRDVFTIR  368 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G----------~--~~s~~~~~~v~~~p~~P~~p~~l--~-~~~-~~~~~sv~l~  368 (1101)
                      .+.|.|.++..+|+|.|+|.+.+..|          .  ..+....+.|...+.  ..|.+.  . ... .+....++|.
T Consensus        79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~~P~i~~~~~~~~~~~~~~~v~L~  156 (512)
T 1zvo_C           79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT--KAPDVFPIISGCRHPKDNSPVVLA  156 (512)
T ss_pred             EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC--cCCeEEeccCCcccccCCCeEEEE
Confidence            46799999999999999999976542          0  122334555543221  122211  0 000 1223567777


Q ss_pred             EeCCCCCCCcCeeEEEEEEEecCCCc-eEE-----c-CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCC-----
Q psy8139         369 WEPPEYDGGSPVLGYLVEHRRTGSPY-WVR-----A-SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP-----  436 (1101)
Q Consensus       369 W~~p~~~g~~~i~~Y~v~~~~~~~~~-w~~-----~-~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~-----  436 (1101)
                      |........ ++   .|.|...+... ...     . +........|+|...... .|.|+|.|.|..|......     
T Consensus       157 C~~~g~~P~-p~---~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~  231 (512)
T 1zvo_C          157 CLITGYHPT-SV---TVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPE  231 (512)
T ss_pred             EEEEeeecC-ce---EEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCC
Confidence            765411000 11   12222211110 000     0 000011134778777766 8999999999887643211     


Q ss_pred             -CCcceEEEeccC------------------------------------------------CCCCCee-eecCceeEEcc
Q psy8139         437 -LSEPLTVTYQRS------------------------------------------------PAAAPSF-IRALHDTTALE  466 (1101)
Q Consensus       437 -~s~~vtv~~~~~------------------------------------------------~~~~P~~-~~~p~~~~v~~  466 (1101)
                       ....+.+.+...                                                ...+|.+ +..|....+..
T Consensus       232 ~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~  311 (512)
T 1zvo_C          232 SPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWL  311 (512)
T ss_pred             CCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhcc
Confidence             001112222110                                                1134444 33444445678


Q ss_pred             CCeEEEEEEEeccCC--CeEEEEECCEEeecCCcE-EEE-ecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         467 DEKVEFTVQVEGIPT--PKVSWYKDGFEIFSSRRQ-RIV-TDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~~~~~-~~~-~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      |+.++|.|.+.|..+  ..|+|+++|..+...... ... ..++    .+.|.|......|.|.|+|.|.|..+... ..
T Consensus       312 g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~  390 (512)
T 1zvo_C          312 RDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RL  390 (512)
T ss_pred             CCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ce
Confidence            999999999988633  389999999875421100 011 1111    24688988888899999999999887654 22


Q ss_pred             EEee------ccCCccccCCCCCCCeEEeeCCEEE-EEEEEeecCC--CeeEEEECCeecCCCCce--EEEee-cc----
Q psy8139         539 RLRL------EAPPTIRLPKQYEDGLLFEMGEIIK-LKVSMAGMPP--PTARWLHNGEPLTSGGRY--EITHT-DR----  602 (1101)
Q Consensus       539 ~l~V------~~~p~~~~~~~~~~~~~v~~g~~~~-l~c~~~g~p~--~~v~W~~~g~~l~~~~~~--~~~~~-~~----  602 (1101)
                      .+..      ..+|.+...+..    .  .|+.+. |.|.+.|.++  ..+.|.++|.++..+...  ..... ++    
T Consensus       391 ~~~~~~~~~~~~~p~v~~~~~~----~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~  464 (512)
T 1zvo_C          391 MALREPAAQAPVKLSLNLLASS----D--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFW  464 (512)
T ss_pred             eEEeecCCCCCCCCEEEEEccC----c--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEE
Confidence            2221      233443222110    1  588889 9999998543  478999999988653211  11111 11    


Q ss_pred             -eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         603 -YLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       603 -~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                       ...|.|......+.|.|+|.|.|.......
T Consensus       465 ~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~  495 (512)
T 1zvo_C          465 AWSVLRVPAPPSPQPATYTCVVSHEDSRTLL  495 (512)
T ss_pred             EEEEEEECchhcCCCCeEEEEEEecCCCCce
Confidence             134556655556699999999998765433

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.62  E-value=1.8e-15  Score=155.81  Aligned_cols=172  Identities=12%  Similarity=0.056  Sum_probs=121.3

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.|...|. ..+.+|++++|.|.+.+.|. .+.|+++|..+....... ........|.|.++...|+|.|+|.|.|
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            35677777776 47899999999999998876 699999987663211100 0012234899999999999999999999


Q ss_pred             CC-Cc--eEEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc-eEEEe-ec
Q psy8139         530 RA-GH--SITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITH-TD  601 (1101)
Q Consensus       530 ~~-g~--~~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~-~~  601 (1101)
                      .. |.  .+....|.|..   +|.+...+    ...+..|+.+.|.|.+.+. .+.+.|+++|..+..... +.... .+
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~  154 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQP----SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGS  154 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEES----CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------C
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCC----ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCc
Confidence            87 53  34456777776   33333222    2367889999999999988 789999999987643221 11111 22


Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ....|.|.++...|.|.|+|.|.|..+.
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            3578999999999999999999998763

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.62  E-value=3e-15  Score=156.26  Aligned_cols=181  Identities=15%  Similarity=0.110  Sum_probs=129.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCee--EEEEeecCCCCCEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+++|..+..... .........  .|.|.++...|+|.|+|.|
T Consensus         7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            46777877776 57899999999999987 6789999998765432211 111112233  8999999999999999999


Q ss_pred             EeCCCceEE--EEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecc
Q psy8139         528 TNRAGHSIT--KARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR  602 (1101)
Q Consensus       528 ~n~~g~~~~--s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~  602 (1101)
                      .|..|....  ...|.|..   +|.+...+    ...+..|+.++|.|...+.+.+.+.|+++|..+...    ......
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p----~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~  155 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR----GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEH  155 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESS----CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSS
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCC----CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCc
Confidence            998764333  35667764   34443332    236789999999997777888999999999877542    112334


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCC-----ceeEEEEEEecC
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGE-----DVASFLVTVTDR  641 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~-----~~~s~~l~v~~~  641 (1101)
                      ...|.|.++...|.|.|+|.|.|..+.     .+....|.|.+.
T Consensus       156 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          156 PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            678999999999999999999986432     233456666654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.62  E-value=3.3e-15  Score=155.01  Aligned_cols=174  Identities=20%  Similarity=0.310  Sum_probs=128.3

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-------------------CCcEEEEecCCeeEEEEeecCCCC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-------------------SRRQRIVTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-------------------~~~~~~~~~~~~~~l~I~~l~~~d  519 (1101)
                      |....+.+|++++|.|...+.|.+.+.|++++.....                   ..++.+.. +  .+|.|.++...|
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-~--~~L~i~~v~~~D   82 (208)
T 3r4d_A            6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-N--GSLLFQMITMKD   82 (208)
T ss_dssp             EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-T--SCEEECSCCGGG
T ss_pred             CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-C--CeEEEccccccC
Confidence            3446788999999999988889999999987532111                   12222221 1  279999999999


Q ss_pred             CEEEEEEEEeCC-CceEEEEEEeeccCC---ccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCce
Q psy8139         520 EGEIKCTATNRA-GHSITKARLRLEAPP---TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY  595 (1101)
Q Consensus       520 ~g~Y~C~a~n~~-g~~~~s~~l~V~~~p---~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~  595 (1101)
                      +|.|+|.+.+.. +.......|.|..++   .+...+.   .  +..|..+.|.|.+.+.| +.+.|+++|..+..+.++
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~---~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~  156 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT---T--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERM  156 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS---S--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSE
T ss_pred             CeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCc---e--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCe
Confidence            999999999985 445556778887653   3322211   1  67799999999999976 899999999999877666


Q ss_pred             EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEEEEEecCCC
Q psy8139         596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRPL  643 (1101)
Q Consensus       596 ~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~~~P~  643 (1101)
                      .+..  ...+|.|.++...|.|.|+|.|.|..|...+ ...+.|..+|.
T Consensus       157 ~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          157 TLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             EEET--TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             EEcC--CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            5543  2478999999999999999999999997543 55666655443

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.62  E-value=5.5e-15  Score=154.19  Aligned_cols=78  Identities=18%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             EEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         704 FTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       704 i~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +.|+|.+|..++++++.+|.|+|+..+. ..|..+.......++++|.+|.|++.|.|+|.|.|..|.|++|......|
T Consensus       132 v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  210 (214)
T 2ibg_A          132 VVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT  210 (214)
T ss_dssp             EEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred             EEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEe
Confidence            3333333333345568899999988776 67877655434578999999999999999999999999998877655444

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.62  E-value=2.6e-14  Score=154.63  Aligned_cols=191  Identities=13%  Similarity=0.158  Sum_probs=137.4

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEec-cCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeec---CCCCCEE-
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQA---ALMDEGE-  522 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l---~~~d~g~-  522 (1101)
                      +.+|.+...   ..+.+|++++|.|.+.| .|.+  .++|+++|..+..    .+...+.  .+.+..+   ...|+|. 
T Consensus         4 ~~~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g   74 (265)
T 2oz4_A            4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQ   74 (265)
T ss_dssp             SSCCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEE
T ss_pred             CCCCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcc
Confidence            455655432   36889999999999998 7777  9999999988754    2333333  5555555   7778775 


Q ss_pred             -EEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec
Q psy8139         523 -IKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD  601 (1101)
Q Consensus       523 -Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~  601 (1101)
                       |+|.|.|..|....++.|.|...|.....+   ....+..|+.+.|.|.+.  |.+.+.|  +|..+...        +
T Consensus        75 ~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~---~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~--------~  139 (265)
T 2oz4_A           75 RLTCAVILGNQSQETLQTVTIYSFPAPNVIL---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL--------G  139 (265)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCCCEEEE---SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC--------S
T ss_pred             eEEEEEecCCCCcEEEEEEEEeCCCCceeec---CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC--------C
Confidence             999999999988888899997643322111   233677899999999998  8999999  77766322        2


Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCC-CCce---eEEEEEEecCCCCCCc---cEEEEecCCeEEEEeec
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSL-GEDV---ASFLVTVTDRPLPPGK---AKVVMTLGKSVTLSWSE  664 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~-G~~~---~s~~l~v~~~P~~P~~---~~~~~~~~~sv~lsW~~  664 (1101)
                      ....|.|..+...+.|.|+|.|.|.. |...   ....+.|..+|.....   .......+..++|.|..
T Consensus       140 ~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~  209 (265)
T 2oz4_A          140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA  209 (265)
T ss_dssp             SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCC
T ss_pred             CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeEC
Confidence            24568888999999999999998644 7654   5667777766644221   13444568888888874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.62  E-value=3.4e-15  Score=167.51  Aligned_cols=257  Identities=15%  Similarity=0.188  Sum_probs=169.6

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEecc----CCCeEEEEECC--EE-------------e--ecCCcEEEE-ecCCeeE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGI----PTPKVSWYKDG--FE-------------I--FSSRRQRIV-TDNDIST  509 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~g--~~-------------~--~~~~~~~~~-~~~~~~~  509 (1101)
                      ++.++..|.++.+.+|++++|.|.+.+.    +.+.+.|++++  ..             +  ....++.+. ...+..+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3445566778899999999999999876    55579999943  21             1  112333332 1223457


Q ss_pred             EEEeecCCCCCEEEEEE-EEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeC---CEEEEEEE-EeecCCCeeEEEE
Q psy8139         510 LIIHQAALMDEGEIKCT-ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMG---EIIKLKVS-MAGMPPPTARWLH  584 (1101)
Q Consensus       510 l~I~~l~~~d~g~Y~C~-a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g---~~~~l~c~-~~g~p~~~v~W~~  584 (1101)
                      |.|.++...|+|.|+|. +.+..|.....+.|.|..+|.+..... ...+.+..|   +.+.|.|. ..+.|.+.+.|++
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGT-QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEEC-SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecC-CCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            99999999999999998 566677777788999998887633221 234567777   78999997 8899999999998


Q ss_pred             CCeecC-------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCC----CCccEEEEe
Q psy8139         585 NGEPLT-------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP----PGKAKVVMT  653 (1101)
Q Consensus       585 ~g~~l~-------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~----P~~~~~~~~  653 (1101)
                      ++....       ....+.+     ...|.|..+...|.|.|+|.|.|..|..+.+..|.|..+|..    +..  ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~--~~~~  245 (331)
T 3u83_A          173 RLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDG--NWYL  245 (331)
T ss_dssp             SSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCS--CCBT
T ss_pred             CCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCC--ceEe
Confidence            532211       1111111     356889999999999999999999988777777777655421    111  1123


Q ss_pred             cCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC
Q psy8139         654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY  733 (1101)
Q Consensus       654 ~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~  733 (1101)
                      .+.++.|+|...+.+                                 ....+.|....    .++..           .
T Consensus       246 ~g~~~~l~C~~~g~p---------------------------------~p~~i~W~~~~----~~~~~-----------~  277 (331)
T 3u83_A          246 QRMDVKLTCKADANP---------------------------------PATEYHWTTLN----GSLPK-----------G  277 (331)
T ss_dssp             TCCCEEEEEEEEEES---------------------------------CCCEEEEEETT----BSCCT-----------T
T ss_pred             CCCeEEEEEeCcCCC---------------------------------CCCEEEEEECC----Ccccc-----------c
Confidence            457788888752211                                 11136775421    11100           0


Q ss_pred             ceeecccccCccEEEEc-CCCCCceEEEEEEEEcCCcc
Q psy8139         734 WVRASPHMVEDTELMVS-GLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       734 ~~~~~~~~~~~~~~~i~-~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                       ..     .....+.|. ++.......|.|.|.|..|.
T Consensus       278 -~~-----~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~  309 (331)
T 3u83_A          278 -VE-----AQNRTLFFKGPINYSLAGTYICEATNPIGT  309 (331)
T ss_dssp             -EE-----EETTEEEECSCCCGGGCEEEEEEEEETTEE
T ss_pred             -ce-----ecCcEEEEeCCCccccCeEEEEEEEecccc
Confidence             00     133578888 89999999999999999997

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.62  E-value=4.9e-16  Score=173.01  Aligned_cols=262  Identities=16%  Similarity=0.177  Sum_probs=170.8

Q ss_pred             eeEEccCCeEEEEEEEeccC-CCeEEEEECCEEee----cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         461 DTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIF----SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~----~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      .+.+.+|+++.|.|.+.+.| .+.+.|++++..+.    ...++..  .++  .|.|.++...|+|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HKE--KLWFVPAKVEDSGHYYCVVRNSSYCLR   89 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE--CSS--BEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec--cCC--eEEECCCChhhCEEEEEEEeCCceEEE
Confidence            56788999999999999888 78999999985432    1222222  222  799999999999999999999988766


Q ss_pred             EEEEEeec-cCCccccCCCCCCCeEEeeCCEEEEEEEE------eecCCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         536 TKARLRLE-APPTIRLPKQYEDGLLFEMGEIIKLKVSM------AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       536 ~s~~l~V~-~~p~~~~~~~~~~~~~v~~g~~~~l~c~~------~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      ....+.+. .+|.+...+.......+..|+.+.|.|.+      .|.|.+.+.|++++..+..+.... ..  ....|.|
T Consensus        90 ~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~-~~--~~~~L~i  166 (315)
T 1itb_B           90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SG--VKDRLIV  166 (315)
T ss_dssp             EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE-EE--ETTEEEE
T ss_pred             EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE-ee--cCceEEE
Confidence            65555543 34544333322223467789999999998      889999999999999986533221 11  2458999


Q ss_pred             ccCCCCCCeEEEEEEE-eCCCCce---eEEEEEEecC--CCCCC-----ccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         609 SDARRADRGEYQAHGV-NSLGEDV---ASFLVTVTDR--PLPPG-----KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~-N~~G~~~---~s~~l~v~~~--P~~P~-----~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      .++...|.|.|+|.|. |..|...   ....+.+...  +.+|.     .-.+....+..+.|.|...+.+.        
T Consensus       167 ~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~--------  238 (315)
T 1itb_B          167 MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS--------  238 (315)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT--------
T ss_pred             EeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC--------
Confidence            9999999999999999 7888763   2333433321  22331     11234556778899998632111        


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCC---CCCCCc-ceEEEEEEeCCCCCceeecccccCccEEEEcCCC
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPV-LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE  753 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~---~~~~~i-~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  753 (1101)
                                                ..+.|.....   ..+..+ ..|.   .......    .........++|.++.
T Consensus       239 --------------------------p~i~W~~~g~~i~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~L~i~~v~  285 (315)
T 1itb_B          239 --------------------------DIAYWKWNGSVIDEDDPVLGEDYY---SVENPAN----KRRSTLITVLNISEIE  285 (315)
T ss_dssp             --------------------------SEEEEEETTEECCTTCSSEEEEEE---EECCSSC----GGGEEEEEEEEESSCC
T ss_pred             --------------------------CeeEEEECCEECCcccccccccce---eeeccCC----CceeEEEEEEEEeecC
Confidence                                      1356764210   111000 1111   0000000    0000123478999999


Q ss_pred             CCc-eEEEEEEEEcCCcc
Q psy8139         754 PGW-RYQFRITAENVVGF  770 (1101)
Q Consensus       754 p~t-~Y~~~V~A~n~~G~  770 (1101)
                      ... ...|.|.|.|..|.
T Consensus       286 ~~d~~G~Y~C~a~N~~G~  303 (315)
T 1itb_B          286 SRFYKHPFTCFAKNTHGI  303 (315)
T ss_dssp             GGGGTSCEEEEEECTTCC
T ss_pred             HHHcCCceEEEEecCCCc
Confidence            998 99999999999996

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.61  E-value=3.5e-15  Score=169.43  Aligned_cols=280  Identities=13%  Similarity=-0.039  Sum_probs=144.1

Q ss_pred             CCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEec-CCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcc
Q psy8139         614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTL-GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL  692 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~-~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~  692 (1101)
                      ...|.+++.+.|..|.+..+. ..+  .|.||.++.+.... .+++.|+|++|.+.                        
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~v--~~~pP~nl~v~~~~~~~~v~LsW~p~~~~------------------------   59 (380)
T 3lb6_C            7 AVGCLYTFLISTTFGCTSSSD-TEI--KVNPPQDFEIVDPGYLGYLYLQWQPPLSL------------------------   59 (380)
T ss_dssp             ---------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC-------------------------
T ss_pred             ehhhhhhheeecccccccCCc-ccc--cCCcCCceEEEecCcCceEEEEECCCCCc------------------------
Confidence            466888888998888653221 112  48899999988665 57788888876421                        


Q ss_pred             cCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC----C
Q psy8139         693 LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV----V  768 (1101)
Q Consensus       693 ~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~----~  768 (1101)
                                          +..++.+..|.|.|+..++..|..+...  ...  ...++..++.|+|+|+|.|.    .
T Consensus        60 --------------------~~~~~~~~~Y~v~~~~~~~~~w~~~~~~--~~~--~~~~~~l~~~y~~rV~a~~~~~~~~  115 (380)
T 3lb6_C           60 --------------------DHFKECTVEYELKYRNIGSETWKTIITK--NLH--YKDGFDLNKGIEAXIHTLLPWQCTN  115 (380)
T ss_dssp             -------------------------CCCEEEEEEEETTCSSCEEEEES--SSE--EEEECCTTSCEEEEEEEECCHHHHS
T ss_pred             --------------------cccccceEEEEEEECCCCCCcceEEEec--cEE--EEEeecCCCceEEEEEeecCCcccC
Confidence                                0122457899999999887789887653  222  23355669999999999976    7


Q ss_pred             ccCCCCCCCCcEEec-CCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEE
Q psy8139         769 GFSEPGPLSEPLTVT-YQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETI  845 (1101)
Q Consensus       769 G~g~~S~~s~~~t~~-~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~  845 (1101)
                      |.|.+|+++..++.. .++.|+.+|.++.  ....+.+...|.|+...             +...            .|.
T Consensus       116 g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~~~-------------~~~~------------~Y~  170 (380)
T 3lb6_C          116 GSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGV-------------LLDT------------NYN  170 (380)
T ss_dssp             SSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC-------------------C------------CEE
T ss_pred             CccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCCCC-------------CCCc------------cEE
Confidence            888888888777754 4578899999887  44556677889774321             2334            788


Q ss_pred             eeeeccCCCC--CCceeeeec-----cccccCCCCCCCCCccCcccce--eeccccccc--CceeecccCCCCccCCCCC
Q psy8139         846 SSFRDKYVDN--EDDYDIVET-----NEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHYPTL  914 (1101)
Q Consensus       846 v~~r~~~~~~--~~~~~~v~~-----~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~P~~  914 (1101)
                      +.|+..+.+.  ++.......     -.+...+       +..++.|.  |.|.|..|.  +..+...+.+.++..||.+
T Consensus       171 l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~-------~~~~~~Y~i~V~a~n~~G~~~s~~~~~~~~~~v~p~pP~~  243 (380)
T 3lb6_C          171 LFYWYEGLDHALQCVDYIKADGQNIGCRFPYLE-------ASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY  243 (380)
T ss_dssp             EEEECTTCSSCEECSEEEEC--CEEEEECCCCT-------TCSSSCEEEEEEEC-----CCCEEEEECGGGSCCCCCCEE
T ss_pred             EEEEECCCCccccCCCccccCCceEEEEeCCCc-------ccceeEEEEEEEEEcCCeeeccccEEEcHHHcccCCCCce
Confidence            8887655322  122111110     1111222       34788898  999999887  4444444445577889999


Q ss_pred             Chhhhhhhhhhhccc-cccccc-cchhhcccccchhhhhhcccccccccccccCCceeEeecC-CCCCCCceeec
Q psy8139         915 DEEEEEEDRESLVKD-RESSVK-GKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDK-PDDEPDYVIKG  986 (1101)
Q Consensus       915 v~~~~~~~n~t~v~v-p~~~~n-G~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~-~~~~~~~~~~~  986 (1101)
                      +++.....++..+.| +|...+ +.+.+|.|     .|+..++. ......  ..  ..+|.+ +.+++.|.+..
T Consensus       244 l~v~~~~~~~l~l~W~~P~~~~~~~~l~Yev-----~y~~~~~~-w~~~~~--~~--~~~l~~~L~p~t~Y~~qV  308 (380)
T 3lb6_C          244 LTFTRESSCEIKLKWSIPLGPIPARCFDYEI-----EIREDDTT-LVTATV--EN--ETYTLKTTNETRQLCFVV  308 (380)
T ss_dssp             EEEC-------CEEEECCSSSCCSTTEEEEE-----CC---------CCEE--SS--SCC------------CCE
T ss_pred             EEEEEcCCCeEEEEECCCCCCCCcceEEEEE-----EEEeCCCC-ceEecc--cc--eEEEeCccCCCcEEEEEE
Confidence            999876323444455 444444 58899999     88875432 222111  12  356788 99999999888

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.61  E-value=1.6e-15  Score=154.14  Aligned_cols=164  Identities=12%  Similarity=0.109  Sum_probs=125.7

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEE--eec------------CCcEEEEe---cCCeeEEEEeecCCCCCEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE--IFS------------SRRQRIVT---DNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~--~~~------------~~~~~~~~---~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      .+.+..|++++|.|.+.+.|.+.+.|++++..  +..            ..++....   ..+..+|.|.++...|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35688999999999999999999999998752  211            11222221   22345699999999999999


Q ss_pred             EEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecce
Q psy8139         524 KCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY  603 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~  603 (1101)
                      +|.+.|..|    .+.|.|...+   .++    ...+..|+.+.|.|.+.+.|.+.+.|++++..+.          ...
T Consensus        84 ~C~~~~~~~----~~~l~V~~~~---~~~----~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~----------~~~  142 (184)
T 2ny1_B           84 ICEVEDQKE----EVQLLVFGLT---ANS----DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI----------QGG  142 (184)
T ss_dssp             EEEETTEEE----EEEEEEEEEE---ESS----CSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE----------EES
T ss_pred             EEEEEcCCC----cEEEEEEEec---CCC----CceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc----------cCc
Confidence            999988654    4455555322   111    2267889999999999999999999999875441          125


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP  645 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P  645 (1101)
                      ..|.|.++...|.|.|+|.|.|..|.......+.|.+.|.+|
T Consensus       143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence            689999999999999999999999988899999999888654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=151.42  Aligned_cols=160  Identities=15%  Similarity=0.093  Sum_probs=120.3

Q ss_pred             CCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       449 ~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ...+|.+...|.. .+.+|++++|.|.+.+ |.+.+.|+++|...        .  .....|.|.++...|+|.|+|.|.
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~--~~~~~L~i~~v~~~D~G~Y~C~a~   72 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------Y--QDQAVLFIPAMKRSLAGRYRCSYQ   72 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------E--ESSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------c--CcccEEEECcCChhhCceEEEEEE
Confidence            3467888777764 7899999999999988 77899999987541        1  122389999999999999999999


Q ss_pred             eCCCce--EEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecce
Q psy8139         529 NRAGHS--ITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY  603 (1101)
Q Consensus       529 n~~g~~--~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~  603 (1101)
                      |..|..  +....|.|..   +|.+...+.    ..+..|+.+.|.|.+.+.+ +.+.|+++|..+.....    .....
T Consensus        73 n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~----~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~----~~~~~  143 (184)
T 2gi7_A           73 NGSLWSLPSDQLELVATGVFAKPSLSAQPG----PAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP----ERWYR  143 (184)
T ss_dssp             ETTEEBCCCCCEEEEEESSSCCCEEEEECC----CSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC----CEEEE
T ss_pred             cCCCccCCCCCEEEEecCcCCCCEEEeCCC----ceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec----CCCce
Confidence            987643  2345666643   344433221    2456799999999987654 69999999987764221    11235


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..|.|.++...|.|.|+|.|.|..+.
T Consensus       144 ~~L~i~~v~~~D~G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          144 ASFPIITVTAAHSGTYRCYSFSSRDP  169 (184)
T ss_dssp             ESSSEEEETTCCSEEEEEEEECTTST
T ss_pred             EEEEEccCCccCCeEEEEEEEeCCCC
Confidence            67899999999999999999998653

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.61  E-value=1.2e-14  Score=159.31  Aligned_cols=248  Identities=16%  Similarity=0.106  Sum_probs=146.7

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      ..+..|++++|.|.+...+  .|.|.++|.....       ..+  ++|+|.++...|+|.|+|.+   .|.....+.|.
T Consensus        16 ~~~~~G~~v~l~C~~~~~~--~i~W~~~~~~~~~-------~~~--~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~   81 (306)
T 3d85_D           16 YPDAPGEMVVLTCDTPEED--GITWTLDQSSEVL-------GSG--KTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLL   81 (306)
T ss_dssp             CSSCCCEEEEEECSSSCCS--SCEEEETTCCCCC-------EES--SEEEEEECSGGGCEEEEEEE---TTEEEEEEEEE
T ss_pred             ccCccCCcEEEECCCCCCC--cCEEEECCccccC-------CCC--CEEEEEecCcCCCceEEEee---CCcccceEEEE
Confidence            3456899999999887433  7999999874321       122  38999999999999999999   35555566666


Q ss_pred             eccCC------ccccCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCeecCCCCceEEEe-------------ec
Q psy8139         542 LEAPP------TIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGRYEITH-------------TD  601 (1101)
Q Consensus       542 V~~~p------~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~-------------~~  601 (1101)
                      |..++      .+...+..+      ++ ...|.|.....+ ..+++|.+++..... ..+....             ..
T Consensus        82 v~~~~~~~~~t~i~~~~~~p------p~-~~~lsC~~~~~~~~~~C~W~pg~~~~l~-~~~~~~r~~~~~~~~~C~~~~~  153 (306)
T 3d85_D           82 LHKKEDGIWSTDILKDQKEP------KN-KTFLRCEAKNYSGRFTCWWLTTISTDLT-FSVKSSRGSSDPQGVTCGAATL  153 (306)
T ss_dssp             EEEEETTEECCCSSCCCC---------C-CCCCEEEBSSSSSEEEEEEEESCCSSEE-EEEEEEECSSSCEEEEECCCEE
T ss_pred             EEeccCCcceeeeecccCCC------CC-CCcceEEcCCcccCcEEEecCCCCCcee-EEEEEEecCCCCcceECCCCCC
Confidence            55321      111111000      01 124566655554 556666654431000 0000000             00


Q ss_pred             ceEEEE-------------EccCCC----CCCeEEEEEEEeCCCCceeEEEEEE--ecCCCCCCccEEEEecC-CeEEEE
Q psy8139         602 RYLNLR-------------ISDARR----ADRGEYQAHGVNSLGEDVASFLVTV--TDRPLPPGKAKVVMTLG-KSVTLS  661 (1101)
Q Consensus       602 ~~~sl~-------------i~~l~~----~~~y~y~c~A~N~~G~~~~s~~l~v--~~~P~~P~~~~~~~~~~-~sv~ls  661 (1101)
                      ....+.             +..+-+    ...|.|+|.|.|..|..+....+.+  ...|+||.++.+..... ..+.|+
T Consensus       154 ~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vs  233 (306)
T 3d85_D          154 SAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVS  233 (306)
T ss_dssp             EEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEE
T ss_pred             CccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEE
Confidence            011111             122222    2478999999999997665544433  25799999988876433 677888


Q ss_pred             eecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccc
Q psy8139         662 WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM  741 (1101)
Q Consensus       662 W~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~  741 (1101)
                      |++|...+.                                        |   .+.-.+.|.|+|+..+...|.....  
T Consensus       234 W~~P~~~~~----------------------------------------p---~~~~~L~Y~vryr~~~~~~~~~~~~--  268 (306)
T 3d85_D          234 WEYPDTWST----------------------------------------P---HSYFSLTFCVQVQGKSKREKKDRVF--  268 (306)
T ss_dssp             EECCTTSCS----------------------------------------C---TTTSCEEEEEEEECC------CEEE--
T ss_pred             EcCCCCCcC----------------------------------------C---CceeeEEEEEEEEECCCCccEEEee--
Confidence            886642111                                        1   1112368999999887766655433  


Q ss_pred             cCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       742 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      ...+++.|.   +++.|.|+|+|.|..|.|.||++|..
T Consensus       269 ~~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~~  303 (306)
T 3d85_D          269 TDKTSATVI---CRKNASISVRAQDRYYSSSWSEWASV  303 (306)
T ss_dssp             ESSSEEEEC---CCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             ccccEEEEe---CCCeEEEEEEeccCCCCCCCCCCCCC
Confidence            556777774   69999999999999999999988854

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.61  E-value=2.4e-15  Score=169.73  Aligned_cols=216  Identities=12%  Similarity=0.158  Sum_probs=136.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-C
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-P  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-~  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+..     +....+.+...+..+|.+...+....+..|+.++|.|.+.|. |. +
T Consensus        78 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~-----~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~  152 (344)
T 1za6_B           78 TAYVELSSLRSEDTAVYFCTRSLNMAYW-----GQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  152 (344)
T ss_dssp             EEEEEECSCCGGGCEEEEEEETTTTCEE-----CCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCC
T ss_pred             EEEEEECCCCcccCEEEEEEEecCccee-----cCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCe
Confidence            3579999999999999999998843221     122455555444456666544444456799999999999987 54 6


Q ss_pred             eEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee----------------
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL----------------  542 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V----------------  542 (1101)
                      .|+|++++..+...........++    .+.|.|.++...| |.|+|.|.|..|.......+.+                
T Consensus       153 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  231 (344)
T 1za6_B          153 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGS  231 (344)
T ss_dssp             CEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-------------
T ss_pred             EEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCc
Confidence            999999986532100000011111    2378898888877 9999999999886544333321                


Q ss_pred             --------ccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEeecc-----eEEEE
Q psy8139         543 --------EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITHTDR-----YLNLR  607 (1101)
Q Consensus       543 --------~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~  607 (1101)
                              ..+|.+...+...   ....|..+.|.|.+.|. | .+.++|.++|..+...........++     ...+.
T Consensus       232 ~l~~~~~~~~~P~v~~~~~~~---~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~  308 (344)
T 1za6_B          232 SGGGSGGQPREPQVYTLPPSR---DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT  308 (344)
T ss_dssp             -------CCBCCEEEEECCCG---GGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEE
T ss_pred             cccccCCCCcCCEEEEeCCCh---HhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEE
Confidence                    2234332211110   01235669999999985 4 46899999998876432211111111     23455


Q ss_pred             EccCCCCCCeEEEEEEEeCCCC
Q psy8139         608 ISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       608 i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      |......+.|.|+|.|.|....
T Consensus       309 i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          309 VDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             ECHHHHHTTCEEEEEEECTTST
T ss_pred             EChHHccCCCeEEEEEEcCCCC
Confidence            5555556699999999997654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.60  E-value=2.2e-14  Score=151.00  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=117.5

Q ss_pred             ceeEEccCCeEEEEEEEeccCCC---eEEEEECCEE-----------eec------CCcEEEEe---cCCeeEEEEeecC
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTP---KVSWYKDGFE-----------IFS------SRRQRIVT---DNDISTLIIHQAA  516 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~-----------~~~------~~~~~~~~---~~~~~~l~I~~l~  516 (1101)
                      ..+.+..|++++|.|.+.+.+.+   .|.|++++..           +..      ..+.....   ..+..+|.|.++.
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34678899999999999876655   6999986531           111      11222222   1245689999999


Q ss_pred             CCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCCeeEEEECCee-cCCCCc
Q psy8139         517 LMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEP-LTSGGR  594 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~-l~~~~~  594 (1101)
                      ..|+|.|+|.|.|..|.......+.+..++..  .   .....+..|..+.+.|.+.| .|.|.++|++++.. +.....
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~--~---~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~  166 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSD--L---HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA  166 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCC--C---EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceec--c---cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce
Confidence            99999999999998877665554444333222  1   12346778999999999998 59999999986544 332222


Q ss_pred             eEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         595 YEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       595 ~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      ...... +....+.+..+...|.|.|+|.|.|..|.......+.|.++
T Consensus       167 ~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          167 PVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             CCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            112211 11223344467788999999999999999888888887653

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.60  E-value=1.6e-15  Score=176.81  Aligned_cols=224  Identities=17%  Similarity=0.123  Sum_probs=135.3

Q ss_pred             CCCCCeEEEEEEEeCCCCceeE-EEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCC
Q psy8139         612 RRADRGEYQAHGVNSLGEDVAS-FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKP  690 (1101)
Q Consensus       612 ~~~~~y~y~c~A~N~~G~~~~s-~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p  690 (1101)
                      ...+.|.|.|.+.|..|..... .......+|++|.++. ..++.+++.|+|++|.+.+|.++.+|.|+|.......+  
T Consensus       303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~--  379 (536)
T 3fl7_A          303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESG--  379 (536)
T ss_dssp             ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CC--
T ss_pred             CCCCCCccEEEEeccccccCCCccccccccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCC--
Confidence            3457799999999998865432 2233456888888885 46778888888888776666555555555532210000  


Q ss_pred             cccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139         691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF  770 (1101)
Q Consensus       691 ~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  770 (1101)
                                      .|.+.                 .+...|.. .......++++|.+|.|++.|.|+|.|.|..|.
T Consensus       380 ----------------~~~~c-----------------~~~~~~~~-~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~  425 (536)
T 3fl7_A          380 ----------------ECGPC-----------------EASVRYSE-PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSG  425 (536)
T ss_dssp             ----------------CEEEC-----------------CTTCEESS-CSSSBCSSEEEEECCCTTCEEEEEEEEECTTGG
T ss_pred             ----------------ccccc-----------------CCCceEEE-eecCCccceeEeCCCCCCCEEEEEEEEEecCCC
Confidence                            01100                 00011111 112246789999999999999999999999998


Q ss_pred             CCCCCCCCcEEecCCCCCCCCCcccccccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeec
Q psy8139         771 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRD  850 (1101)
Q Consensus       771 g~~S~~s~~~t~~~~~~P~~~p~~~~~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~  850 (1101)
                      +.+++.+..++..+...+|..|.. ....++++.+.|.||..            .++++.            .|.|.|+.
T Consensus       426 ~sps~~s~~v~v~T~~~~Ps~~~~-~~~s~tSV~LsW~pP~~------------~ng~I~------------~Y~V~y~~  480 (536)
T 3fl7_A          426 LVTSRSFRTASVSINQTEPPKVRL-EGRSTTSLSVSWSIPPP------------QQSRVW------------KYEVTYRK  480 (536)
T ss_dssp             GCSCCCEEEEEEECCSCCCCEEEE-EECCC-CCEEEEECCTT------------TTTTCS------------EEEEEEEE
T ss_pred             CCCCCccceeEEeecccCCCCCce-eeccCCeEEEEEECCcC------------CCCccc------------EEEEEEEE
Confidence            554445555555432333333322 35566778889987533            345566            89998987


Q ss_pred             cCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccccccc---CceeecccC
Q psy8139         851 KYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDS  904 (1101)
Q Consensus       851 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~  904 (1101)
                      .+....+.........+.+.+|.       +.+.|.  |+|.|..|.   |..+...|.
T Consensus       481 ~~~~~~~~~v~~~~ts~~l~gL~-------P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~  532 (536)
T 3fl7_A          481 KGDSNSYNVRRTEGFSVTLDDLA-------PDTTYLVQVQALTQEGQGAGSKVHEFQTL  532 (536)
T ss_dssp             C--CCCCEEEEESSSEEECCSCC-------SSCEEEEEEEEECC---CEECCCEEEECC
T ss_pred             CCCCceEEEEcCCCCEEEECCCC-------CCCEEEEEEEEEcCCcccCCCCCEEEEeC
Confidence            76542233333333445555555       999999  999999997   566666554

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=149.03  Aligned_cols=175  Identities=26%  Similarity=0.323  Sum_probs=125.4

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ++|.+|.++.+...+.+++.|+|++|..                                              +++.++
T Consensus         4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~----------------------------------------------~~~~~i   37 (197)
T 3lpw_A            4 DTPGPPQDLKVKEVTKTSVTLTWDPPLL----------------------------------------------DGGSKI   37 (197)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSC----------------------------------------------CTTSCC
T ss_pred             CCCCCCCCcEEEEecCCEEEEEEcCCcc----------------------------------------------CCCCcc
Confidence            5677888877777777777777776543                                              344467


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--c
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--A  797 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~  797 (1101)
                      .+|.|+|+..+...|...... ...+++++.+|.|++.|.|+|.|.|..|.|.++......+..   .++.+|.++.  .
T Consensus        38 ~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~---~~p~~p~~~~~~~  113 (197)
T 3lpw_A           38 KNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMD  113 (197)
T ss_dssp             CEEEEEEEETTCSSCEEEEEE-ECSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEESC---CCCCCCSCEEEEE
T ss_pred             cEEEEEEEECCCCccEEeecC-CCccEEEEcCCCCCCEEEEEEEEEcCccccCCCCCccceecC---CCCCCCcccEEEe
Confidence            888888888877777766432 577899999999999999999999999999888766666654   3445665554  4


Q ss_pred             ccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceee-eeccccccCCCCCCC
Q psy8139         798 LHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDI-VETNEHTGTGAPSDN  876 (1101)
Q Consensus       798 ~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~-v~~~~~~~~~~~~~l  876 (1101)
                      ...+++.+.|.+|...           .++++.            .|.|.|+..+ ...|.... .....+.+.+|.   
T Consensus       114 ~~~~~v~l~W~~p~~~-----------~~~~i~------------~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~L~---  166 (197)
T 3lpw_A          114 VTRNSVSLSWEKPEHD-----------GGSRIL------------GYIVEMQTKG-SDKWATCATVKVTEATITGLI---  166 (197)
T ss_dssp             ECSSCEEEEECCCSCC-----------TTSCCC------------EEEEEEEETT-CSCCEEEEEESSSEEEECCCC---
T ss_pred             ccCCeEEEEecCCCcC-----------CCCccc------------EEEEEEEeCC-CCceEEeecccccEEEeCCcC---
Confidence            5567788899875432           223556            8999888765 33454432 222444555555   


Q ss_pred             CCccCcccce--eeccccccc
Q psy8139         877 ENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       877 ~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                          +.+.|.  |+|.|..|.
T Consensus       167 ----p~t~Y~~~V~A~n~~G~  183 (197)
T 3lpw_A          167 ----QGEEYSFRVSAQNEKGI  183 (197)
T ss_dssp             ----TTCEEEEEEEEEETTEE
T ss_pred             ----CCCEEEEEEEEEeCCcc
Confidence                999999  999999997

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.60  E-value=2.9e-15  Score=150.73  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             eeEEccCCeEEEEEEEec--cCCCeEEEEECCEEee----------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEG--IPTPKVSWYKDGFEIF----------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g~~~~----------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+.+.+|++++|.|...+  .|.+.|.|++++..+.          ...++.+..++   +|.|.++...|+|.|+|.|.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEE
Confidence            356789999999995433  5567899999997553          23455553222   59999999999999999999


Q ss_pred             eCCCce--EEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139         529 NRAGHS--ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL  606 (1101)
Q Consensus       529 n~~g~~--~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl  606 (1101)
                      |..|..  .....|.|..++..   |     .....+..+.|.|.+.|.|.|.+.|+++|.++..+..           +
T Consensus        82 n~~g~~~~~~~~~l~V~~~~~~---p-----~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~  142 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMVSK---P-----MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------K  142 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCCCC---C-----EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------S
T ss_pred             eCCCCEEEEEEEEEEEeCCCCC---C-----EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------E
Confidence            999986  55567777764321   1     1223345689999999999999999999987754332           3


Q ss_pred             EEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       607 ~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .|.++...|.|.|+|.|.|..|.......+.+
T Consensus       143 ~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          143 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            34467789999999999999998777665543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=1.9e-14  Score=146.62  Aligned_cols=165  Identities=14%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|.. .+..|++++|.|.+.+. .+.+.|+++|..+..... ..........|.|.++...|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            46777777776 78999999999998764 468999999987642110 0011234568999999999999999999987


Q ss_pred             CCce--EEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEE
Q psy8139         531 AGHS--ITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN  605 (1101)
Q Consensus       531 ~g~~--~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~s  605 (1101)
                      .|..  +....|.|..   +|.+...+    ...+..|+.++|.|.+.+ +.+.+.|+++|..+..    ..........
T Consensus        80 ~~~~~~s~~~~l~V~~~~~~p~i~~~p----~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~  150 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMYDTPTLSVHP----GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAE  150 (188)
T ss_dssp             TEECCCCCCEEEEEESCSCCCEEEEES----CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEE
T ss_pred             CCCCCCCCceEEEecccCCCCeEEECC----CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeE
Confidence            6543  3346677764   44443322    236789999999999876 4579999999876643    1123345788


Q ss_pred             EEEccCCCCCCeEEEEEEEeCC
Q psy8139         606 LRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       606 l~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      |.|.+++..|.|.|+|.|.|..
T Consensus       151 L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          151 FPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEECCGGGCEEEEEECEEET
T ss_pred             EEECCCCcCCCcEEEEEEEcCC
Confidence            9999999999999999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.59  E-value=3.4e-15  Score=159.92  Aligned_cols=172  Identities=14%  Similarity=0.128  Sum_probs=122.5

Q ss_pred             cCceeEEccCCeEEEEEEEec---cCCCeEEEEECCEEee------------------------------cCCcEEEEec
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEIF------------------------------SSRRQRIVTD  504 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g---~p~~~v~W~~~g~~~~------------------------------~~~~~~~~~~  504 (1101)
                      .+..+.+.+|++++|.|.+.+   .|.+.+.|++++....                              ...+..+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            445778999999999999988   8888999999864320                              011222111 


Q ss_pred             CCeeEEEEeecCCCCCEEEEEEEEeCCCce-----EEEEEEeeccCCccccCC-CCCCCeEEeeCCEEEEEEEEeecCCC
Q psy8139         505 NDISTLIIHQAALMDEGEIKCTATNRAGHS-----ITKARLRLEAPPTIRLPK-QYEDGLLFEMGEIIKLKVSMAGMPPP  578 (1101)
Q Consensus       505 ~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-----~~s~~l~V~~~p~~~~~~-~~~~~~~v~~g~~~~l~c~~~g~p~~  578 (1101)
                      .+...|.|.++...|+|.|+|.+.|..+..     ...+.|.|..++..+... .....+.+..|..+.|.|.+.+.|.|
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p  166 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA  166 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence            123479999999999999999999987753     346778887753221111 11223456679999999999999999


Q ss_pred             eeEEEECCeecCCCCce--EEE-------------------eecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         579 TARWLHNGEPLTSGGRY--EIT-------------------HTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       579 ~v~W~~~g~~l~~~~~~--~~~-------------------~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      .+.|++++..+......  ...                   .......|.|.++...|.|.|+|.|.|..|..
T Consensus       167 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          167 NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            99999998877542211  000                   00123689999999999999999999977643

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.59  E-value=1.7e-14  Score=144.21  Aligned_cols=164  Identities=18%  Similarity=0.239  Sum_probs=126.4

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|....+..|+++.|.|.+.+.| .+.+.|+++|..+....          ..+.+.++...|+|.|+|.+.|
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~   72 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQ   72 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETT
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeC
Confidence            356677778888899999999999999987 57899999998876431          2467789999999999999987


Q ss_pred             CCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      ..+  .....|.|..++....++.    ..+..|+.+.|.|.+. +.|.+.+.|+++|..+..        ......|.|
T Consensus        73 ~~~--s~~~~l~v~~~~~~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i  138 (170)
T 3ry4_A           73 TSL--SDPVHLTVLFEWLVLQTPH----LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSI  138 (170)
T ss_dssp             SBC--CCCEEEEEECCSEEEECSC----SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEE
T ss_pred             CCc--eEeEEEEEECCceEecCCC----ceeecCCeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEE
Confidence            543  3356777777665443332    3677899999999995 556799999999877542        223567999


Q ss_pred             ccCCCCCCeEEEEEEEeCCCC-ceeEEEEEE
Q psy8139         609 SDARRADRGEYQAHGVNSLGE-DVASFLVTV  638 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~v  638 (1101)
                      .++...|.|.|+|.|.|..|. .+....+.|
T Consensus       139 ~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            999999999999999999886 333444444

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.59  E-value=2.8e-14  Score=149.61  Aligned_cols=180  Identities=12%  Similarity=0.138  Sum_probs=124.7

Q ss_pred             CceeEEccCCeEEEEEEEeccCC-----CeEEEEECCEEeec---------------CCcEEEEec---CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPT-----PKVSWYKDGFEIFS---------------SRRQRIVTD---NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~-----~~v~W~~~g~~~~~---------------~~~~~~~~~---~~~~~l~I~~l  515 (1101)
                      +..+.+..|+++.|.|.+.+.|.     +.+.|++++..+..               ..+..+...   .+..+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            45567889999999999987774     48999997643321               123333221   24568999999


Q ss_pred             CCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCc
Q psy8139         516 ALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGR  594 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~  594 (1101)
                      ...|+|.|+|.+.| .|.....+.|.|..++.......   ...+..|..+.|.|.+.|.|.|.+.|+++ +..+.....
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~---~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~  163 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRI---LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT  163 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEE---EEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCcee---eeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc
Confidence            99999999999999 66666678888887664321110   11456799999999999999999999998 555543222


Q ss_pred             eEEEeec--ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         595 YEITHTD--RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       595 ~~~~~~~--~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      .......  ......+..+...|.|.|+|.|.|..|.......+.|...|
T Consensus       164 ~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          164 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             EEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             eEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            2111111  11112222445688999999999999999888888887554

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.59  E-value=1.1e-14  Score=152.02  Aligned_cols=182  Identities=19%  Similarity=0.271  Sum_probs=126.7

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe-------------ecceEEEEEccC-CCCCCeEEEEEEEeCCC
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-------------TDRYLNLRISDA-RRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------------~~~~~sl~i~~l-~~~~~y~y~c~A~N~~G  628 (1101)
                      +.+..|.|...+.....++|........ ...|.+..             .....++.|.+| .+.+.|.|+|.|.|..|
T Consensus         9 ~~P~~l~~~~~~~~sv~l~W~~p~~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A~n~~G   87 (215)
T 1bqu_A            9 EKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG   87 (215)
T ss_dssp             CCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTE
T ss_pred             CCCEeeEeEECCCCcEEEEcCCCCCCCC-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEEEeccc
Confidence            4456678888777788889986432211 12333322             122367899999 89999999999999999


Q ss_pred             CceeE-EEEEEe--cCCCCCCccEEEEe--cCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCce
Q psy8139         629 EDVAS-FLVTVT--DRPLPPGKAKVVMT--LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDV  703 (1101)
Q Consensus       629 ~~~~s-~~l~v~--~~P~~P~~~~~~~~--~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~s  703 (1101)
                      .+... ..+...  .+|.+|.++.+...  +.+++.|+|++|.                                     
T Consensus        88 ~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~-------------------------------------  130 (215)
T 1bqu_A           88 KVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS-------------------------------------  130 (215)
T ss_dssp             EEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCG-------------------------------------
T ss_pred             CccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCC-------------------------------------
Confidence            87531 222111  35778877766543  4556666666543                                     


Q ss_pred             EEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       704 i~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                               .. ++.+.+|.|+|+..++..|..+..  .....++++|.+|.|++.|.|+|+|.|..|.|++|+++..+.
T Consensus       131 ---------~~-~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~  200 (215)
T 1bqu_A          131 ---------IK-SVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS  200 (215)
T ss_dssp             ---------GG-GTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred             ---------CC-CcceEEEEEEEccCCCCCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCccc
Confidence                     22 246889999999988778887643  136678999999999999999999999999999998888766


Q ss_pred             ec-CCCCCCCCC
Q psy8139         782 VT-YQRSPAAAP  792 (1101)
Q Consensus       782 ~~-~~~~P~~~p  792 (1101)
                      .. .++.|..+|
T Consensus       201 ~~T~~~~P~~~p  212 (215)
T 1bqu_A          201 GITYEDRPSKEP  212 (215)
T ss_dssp             EEECCCHHHHHH
T ss_pred             ccccccCCcCCC
Confidence            54 334444444

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.58  E-value=1.5e-14  Score=172.61  Aligned_cols=98  Identities=32%  Similarity=0.572  Sum_probs=86.6

Q ss_pred             eccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccE
Q psy8139         340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY  419 (1101)
Q Consensus       340 ~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y  419 (1101)
                      ....+|+||+.|.+    .+++.++|+|+|.+|.++||++|++|.|+++..++..|..+..  ...+.+++.||.++..|
T Consensus         5 ~~~~~P~pP~~P~v----~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~--~~~t~~~V~~L~~g~~Y   78 (573)
T 3uto_A            5 ADVPEPEPPRFPII----ENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK--SRYTYTTIEGLRAGKQY   78 (573)
T ss_dssp             ---CCCCCCEEEEE----EEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEE--ESSSEEEECCCCTTCEE
T ss_pred             ccCCCCccCCCCEE----EEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEecc--ccCCEEEeCCCCCCCcE
Confidence            34557899999988    4888999999999999999999999999999999999998864  35688999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCCcceEE
Q psy8139         420 QFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      .|||.|.|..|.|.+|..+.++.+
T Consensus        79 ~FRV~A~N~~G~s~PS~~s~~v~~  102 (573)
T 3uto_A           79 EFRIIAENKHGQSKPCEPTAPVLI  102 (573)
T ss_dssp             EEEEEEEETTEECCCCCCCCCEEC
T ss_pred             eEEEEEEcCceEcCCcCCCCCEEc
Confidence            999999999999999988887765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.58  E-value=1.2e-14  Score=151.46  Aligned_cols=173  Identities=15%  Similarity=0.204  Sum_probs=124.0

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +...| .+.+.+|++++|.|.+.+.|.+.+.|++.  +..   +.         ...++.+....+..+|.|.++...|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE   82 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence            44455 77899999999999999999999999982  211   11         22456655566777999999999999


Q ss_pred             EEEEEEEEeCCC---ceEEEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCC
Q psy8139         521 GEIKCTATNRAG---HSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTS  591 (1101)
Q Consensus       521 g~Y~C~a~n~~g---~~~~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~  591 (1101)
                      |.|.|.|.|..|   .....+.|.|.    .+|.+...+..   ..+..|+.+.|.|.+.|. |. +.+.|+++|..+..
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPS---SEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             EEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCC---HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             EEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCC---cccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            999999999988   33445677887    45544332211   122369999999999985 33 49999999998864


Q ss_pred             CCceE--EEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         592 GGRYE--ITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       592 ~~~~~--~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      +....  ....+   ..+.|.|.++...|.|.|+|.|.|..|...
T Consensus       160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3mj8_L          160 GVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE  204 (213)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEE
T ss_pred             CcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEE
Confidence            31110  00110   135688999999999999999999886543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-12  Score=156.19  Aligned_cols=226  Identities=14%  Similarity=0.118  Sum_probs=137.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCC-----C---CCCCCCcceEEEeccCCCCCCeeee-cCceeEEccCCeEEEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGF-----S---EPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKVEFTVQ  475 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~-----~---~~s~~s~~vtv~~~~~~~~~P~~~~-~p~~~~v~~g~~v~L~C~  475 (1101)
                      ..+|.|.++++.|+|.|.|.+.+..|.     +   ..........+.+...+..+|.+.. .+.......|+.++|.|.
T Consensus        79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~  158 (512)
T 1zvo_C           79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACL  158 (512)
T ss_pred             EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEE
Confidence            468999999999999999999886530     0   0001122345555433345565542 222211234689999999


Q ss_pred             Eecc-CCC-eEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEEE-----------
Q psy8139         476 VEGI-PTP-KVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKA-----------  538 (1101)
Q Consensus       476 ~~g~-p~~-~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~-----------  538 (1101)
                      +.|. |.+ .|+|++++..............++    .+.|+|...... .|.|+|.|.|..|......           
T Consensus       159 ~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~  237 (512)
T 1zvo_C          159 ITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQA  237 (512)
T ss_pred             EEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCC
Confidence            9887 665 899999654321000000111111    235788777766 8999999999988765443           


Q ss_pred             EEeeccCCcc----------------------------------------------ccCCC----CCCCeEEeeCCEEEE
Q psy8139         539 RLRLEAPPTI----------------------------------------------RLPKQ----YEDGLLFEMGEIIKL  568 (1101)
Q Consensus       539 ~l~V~~~p~~----------------------------------------------~~~~~----~~~~~~v~~g~~~~l  568 (1101)
                      .+.+..+|.+                                              ..+|.    .+....+..|+.+.|
T Consensus       238 ~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L  317 (512)
T 1zvo_C          238 SSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATF  317 (512)
T ss_pred             EEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEE
Confidence            2344333320                                              00000    001112446999999


Q ss_pred             EEEEeecCC--CeeEEEECCeecCCCCce-EEE--eec---ceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         569 KVSMAGMPP--PTARWLHNGEPLTSGGRY-EIT--HTD---RYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       569 ~c~~~g~p~--~~v~W~~~g~~l~~~~~~-~~~--~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      .|.+.|..+  ..|+|+++|..+..+... ...  ..+   ..+.|.|......+.|.|+|.|.|..+...
T Consensus       318 ~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~  388 (512)
T 1zvo_C          318 TCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ  388 (512)
T ss_pred             EEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence            999998633  499999999876521110 011  111   135688888888899999999999987654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.58  E-value=2.6e-15  Score=166.55  Aligned_cols=226  Identities=11%  Similarity=0.039  Sum_probs=140.6

Q ss_pred             hhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEE
Q psy8139         305 QAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  384 (1101)
Q Consensus       305 ~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~  384 (1101)
                      .+.|.|.++...|+|.|.|.|.|..+...+....+.+...|.++........ .......+.+.|....   +.|...  
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~l~C~~~~---g~P~~~--  146 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSL-IDGGNETVAAICIAAT---GKPVAH--  146 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCC-CTTCSCEEEEEEEEEE---EBSCCE--
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeecccccccccccee-EEcCCceEEEEEEecC---CcCCce--
Confidence            3569999999999999999997764444444455555444432211110000 1223445555554320   111111  


Q ss_pred             EEEEecCCCc---eEE-cCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC-
Q psy8139         385 VEHRRTGSPY---WVR-ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL-  459 (1101)
Q Consensus       385 v~~~~~~~~~---w~~-~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p-  459 (1101)
                      +.|...+...   ... ..........|.|..+...|.|.|+|.|.|..|....+   ..+.+.+    ..+|.+...+ 
T Consensus       147 i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~---~~~~l~V----~~~P~~~~~~~  219 (308)
T 4fom_A          147 IDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR---YSFILDI----QYAPEVSVTGY  219 (308)
T ss_dssp             EEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE---EEEECCC----CEEEEECCBCC
T ss_pred             EEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE---EeEEEEE----ecCCeeEEccc
Confidence            1221111110   000 00011112468999999999999999999987765322   2223222    3456554433 


Q ss_pred             ceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      ....+..|++++|.|.+.|.|.| .+.|++++..+.....     ..+...+.|.++...|+|.|+|.|.|..|....++
T Consensus       220 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~  294 (308)
T 4fom_A          220 DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQK  294 (308)
T ss_dssp             CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEE
T ss_pred             ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEE
Confidence            44567788999999999999998 6999998876654321     12234677899999999999999999999999999


Q ss_pred             EEeeccCCcc
Q psy8139         539 RLRLEAPPTI  548 (1101)
Q Consensus       539 ~l~V~~~p~~  548 (1101)
                      .|.|..+|..
T Consensus       295 ~l~V~~~P~~  304 (308)
T 4fom_A          295 VIYISDPPHH  304 (308)
T ss_dssp             ECCEECCC--
T ss_pred             EEEEEcCCCC
Confidence            9999988853

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.57  E-value=1.3e-14  Score=151.30  Aligned_cols=174  Identities=11%  Similarity=0.121  Sum_probs=124.8

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--EEe------------ecCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--FEI------------FSSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +...|..+.+..|+++.|.|.+.+.|.+.+.|++++  ..+            ....++.+...++..+|.|.++...|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            345577888999999999999999998999999842  111            112466666566677999999999999


Q ss_pred             EEEEEEEEeCCCceEE-EEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEECCeecCCCCc
Q psy8139         521 GEIKCTATNRAGHSIT-KARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHNGEPLTSGGR  594 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~-s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~g~~l~~~~~  594 (1101)
                      |.|+|.|.|..|.... .+.|.|..   +|.+...+..   ..+..|+.+.|.|.+.| .|.+ .+.|+++|..+..+..
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~---~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS---SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC---HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC---hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            9999999998775433 34677765   4444321111   11235889999999988 5654 8999999998765411


Q ss_pred             eE--EEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         595 YE--ITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       595 ~~--~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      ..  .....     ..+.|.|.++...|.|.|+|.|.|......
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence            11  11111     135899999999999999999999876643

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.57  E-value=4.6e-15  Score=165.71  Aligned_cols=212  Identities=15%  Similarity=0.142  Sum_probs=136.3

Q ss_pred             eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEe-ccCCCCCC-eeeecCceeEEccCCeEEEEEEEecc-CCC-
Q psy8139         407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY-QRSPAAAP-SFIRALHDTTALEDEKVEFTVQVEGI-PTP-  482 (1101)
Q Consensus       407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~-~~~~~~~P-~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~-  482 (1101)
                      .|.|......|.|.|+|.|.|..|...       ..+.. ......+| .+...|....+..|++++|.|.+.|. |.+ 
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~-------~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~  145 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHTFE-------DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKG  145 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEEEE-------EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSS
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCCcc-------eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCC
Confidence            577777777899999999999765421       11111 00111233 33445555667889999999999885 556 


Q ss_pred             --eEEEEECC-EEeecCCcEEEEecC----CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee----ccCCccccC
Q psy8139         483 --KVSWYKDG-FEIFSSRRQRIVTDN----DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL----EAPPTIRLP  551 (1101)
Q Consensus       483 --~v~W~~~g-~~~~~~~~~~~~~~~----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V----~~~p~~~~~  551 (1101)
                        .|+|++++ ..+...........+    ..+.|.|.++...|+|.|+|.|.|..+.......+.+    ..+|.+...
T Consensus       146 ~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~  225 (323)
T 2wqr_A          146 TVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF  225 (323)
T ss_dssp             CCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEE
T ss_pred             ceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEe
Confidence              89999965 433222111110111    2347999999999999999999998754333333322    245544322


Q ss_pred             CCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCCCCceEE----Eeec----ceEEEEEccCCCCCCeEEEE
Q psy8139         552 KQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRYEI----THTD----RYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       552 ~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~~~----~~~~----~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      +....   ...|+.+.|.|.+.|. |. +.+.|+++|..+..+. +..    ...+    ..+.|.|..+...|.|.|+|
T Consensus       226 ~~~~~---~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C  301 (323)
T 2wqr_A          226 ATPEW---PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFIC  301 (323)
T ss_dssp             ECCCC---TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEE
T ss_pred             CCChH---HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEE
Confidence            11111   1128999999999984 43 3899999999886432 111    0111    13578899988889999999


Q ss_pred             EEEeCCCC
Q psy8139         622 HGVNSLGE  629 (1101)
Q Consensus       622 ~A~N~~G~  629 (1101)
                      .|.|..+.
T Consensus       302 ~a~n~~~~  309 (323)
T 2wqr_A          302 RAVHEAAS  309 (323)
T ss_dssp             EEECTTST
T ss_pred             EEEeCCCC
Confidence            99998876

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=151.92  Aligned_cols=255  Identities=14%  Similarity=0.072  Sum_probs=155.2

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecC-CeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN-DISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      +...+.++.+.+|+++.|.|.+.+.    ++|++++..+..  .......+ ..+.|.|.++...|+|.|+|.|.|..|.
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            3334556788999999999999874    999999887631  11211122 1368999999999999999999998876


Q ss_pred             ---eEEEEEEeeccCCccccCCCCC-CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEc
Q psy8139         534 ---SITKARLRLEAPPTIRLPKQYE-DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS  609 (1101)
Q Consensus       534 ---~~~s~~l~V~~~p~~~~~~~~~-~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~  609 (1101)
                         ...+..|.|..++....+.... ..+.+..|+.+.|.|.+. .|.+.++|.+.+........+    ....+ +.  
T Consensus        77 ~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~----~~~~~-~~--  148 (289)
T 3mjg_X           77 ETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY----DHQRG-FS--  148 (289)
T ss_dssp             --CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE----ETTTE-EE--
T ss_pred             CcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee----cCCcC-ee--
Confidence               3334555555333221111100 015688899999999998 778899998865222211111    11111 11  


Q ss_pred             cCCCCCCeEEEEEEEeCCCCcee-EEEEEEecCCCCCCccE-----EEEecCCeEEEEeecCCCCCCcccceeEEEEEcC
Q psy8139         610 DARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRPLPPGKAK-----VVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRP  683 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~~~P~~P~~~~-----~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~  683 (1101)
                        ...|.|.|+|.|.|..|.... ...+.+... .+| .+.     .....+.++.|.|...+.                
T Consensus       149 --~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p-~i~~~~~~~~v~~G~~v~L~C~~~g~----------------  208 (289)
T 3mjg_X          149 --GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSI-NVSVNAVQTVVRQGENITLMCIVIGN----------------  208 (289)
T ss_dssp             --ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCC-CCEEEESCSEEETTSCEEEEEEEESC----------------
T ss_pred             --eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCC-CcEEeCCcceeEcCCCEEEEEEECCC----------------
Confidence              356899999999987765433 345666542 222 111     234567889999986321                


Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                                        ....+.|..+....+..+....   ....       .........++|.++...+...|.|.
T Consensus       209 ------------------p~p~v~W~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~L~I~~v~~~D~G~Y~C~  260 (289)
T 3mjg_X          209 ------------------EVVNFEWTYPRKESGRLVEPVT---DFLL-------DMPYHIRSILHIPSAELEDSGTYTCN  260 (289)
T ss_dssp             ------------------SSBEEEEECTTSSSSCCCCCEE---EESC-------TTTTEEEEEEEESSCCSSCCEEEEEE
T ss_pred             ------------------CCcceEEEcCCccCCCcccccc---cccC-------CcceEEEEEEEEcccChhhCcEEEEE
Confidence                              1246788754332222111100   0000       00013446789999999999999999


Q ss_pred             EEcCCccC
Q psy8139         764 AENVVGFS  771 (1101)
Q Consensus       764 A~n~~G~g  771 (1101)
                      |.|..|..
T Consensus       261 a~N~~G~~  268 (289)
T 3mjg_X          261 VTESVNDH  268 (289)
T ss_dssp             EEETTTTE
T ss_pred             eecCCCCc
Confidence            99999973

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.56  E-value=4.9e-14  Score=149.14  Aligned_cols=145  Identities=17%  Similarity=0.256  Sum_probs=104.3

Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec---CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD---RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~---~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      ....++.|.+|.+++.|.|+|.|.|..|.+..+..+.+..   .|.+|.++.+...+.+++.|+|.+|...+        
T Consensus        55 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~--------  126 (234)
T 3f7q_A           55 SKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN--------  126 (234)
T ss_dssp             ESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCS--------
T ss_pred             CCccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCC--------
Confidence            3466899999999999999999999999776655555543   46677788887777777777777654322        


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC-----ceeecccccCccEEEEcCC
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-----WVRASPHMVEDTELMVSGL  752 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~-----~~~~~~~~~~~~~~~i~~L  752 (1101)
                                                             +.|.+|.|.|+..+...     |..........++++|.+|
T Consensus       127 ---------------------------------------g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  167 (234)
T 3f7q_A          127 ---------------------------------------GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENL  167 (234)
T ss_dssp             ---------------------------------------SCCCEEEEEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECC
T ss_pred             ---------------------------------------CceeEEEEEEEECCCCCCccCcceEEEecCCcceEEEeCCC
Confidence                                                   35777777777655432     3333333345679999999


Q ss_pred             CCCceEEEEEEEEcCCccCCCCCC-CCcEEecCCCCCCCCCcc
Q psy8139         753 EPGWRYQFRITAENVVGFSEPGPL-SEPLTVTYQRSPAAAPSF  794 (1101)
Q Consensus       753 ~p~t~Y~~~V~A~n~~G~g~~S~~-s~~~t~~~~~~P~~~p~~  794 (1101)
                      .|++.|.|+|.|.|..|.|++|.. ..+.  +.+..|+.+|..
T Consensus       168 ~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~--T~~~~P~~~P~~  208 (234)
T 3f7q_A          168 RESQPYRYTVKARNGAGWGPEREAIINLA--TQPKRPMSIPII  208 (234)
T ss_dssp             CTTCCEEEEEEEEETTEECCCEEEEECGG--GSCCCCCCCCCC
T ss_pred             CCCCeEEEEEEEECCCccCCCcCceeEee--cCCCCCCCCccc
Confidence            999999999999999999888653 2222  233566666644

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=8.2e-14  Score=147.66  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=130.2

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.+...|.. .+..|++++|.|.+.+ +.+.+.|+++|..+..... ..........|.|.++...|+|.|+|.+.|
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            456788777776 7899999999999875 4568999999987642100 001123455899999999999999999988


Q ss_pred             CCCce--EEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceE
Q psy8139         530 RAGHS--ITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL  604 (1101)
Q Consensus       530 ~~g~~--~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~  604 (1101)
                      ..+..  +....|.|..   +|.+...+    ...+..|++++|.|.+.+. .+.+.|+++|..+..    .........
T Consensus        82 ~~~~s~~S~~~~L~V~~~~~~P~i~~~p----~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~  152 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEMYDTPTLSVHP----GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQA  152 (242)
T ss_dssp             TTEECCCCCCEEEEEECCSCCCEEEEES----CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEE
T ss_pred             CCccccCCcceEEEeecccCCCceEccC----CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceE
Confidence            65533  3346677764   44443322    2367899999999998764 469999999876543    122334578


Q ss_pred             EEEEccCCCCCCeEEEEEEEeCC---CCceeEEEEEEecCCCCC
Q psy8139         605 NLRISDARRADRGEYQAHGVNSL---GEDVASFLVTVTDRPLPP  645 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~---G~~~~s~~l~v~~~P~~P  645 (1101)
                      .|.|.+++..|.|.|+|.|.|..   ...+....|.|.+.+..|
T Consensus       153 ~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P  196 (242)
T 1p6f_A          153 EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT  196 (242)
T ss_dssp             EEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred             EEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence            89999999999999999999874   133456788888766555

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.55  E-value=2.9e-14  Score=148.64  Aligned_cols=179  Identities=15%  Similarity=0.172  Sum_probs=123.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCe---EEEEECCEEeecC------------------CcEEEEe---cCCeeEEEEe
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPK---VSWYKDGFEIFSS------------------RRQRIVT---DNDISTLIIH  513 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~---v~W~~~g~~~~~~------------------~~~~~~~---~~~~~~l~I~  513 (1101)
                      .|..+++..|++++|.|.+.+.|.+.   |.|++++..+...                  .++.+..   .....+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            45678899999999999999888764   8999875432210                  1111111   1123479999


Q ss_pred             ecCCCCCEEEEEEEEeCCCceEEE-EEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC
Q psy8139         514 QAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG  592 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~  592 (1101)
                      ++...|+|.|.|.+.+..+..... ..+.+..++.....+  .....+..|..+.+.|.+.+.|.|.++|++++..+...
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~  162 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP--GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS  162 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEE--CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeee--eeeeeeeeccccceeeeccCCcCceEEEEECCcccccC
Confidence            999999999999999876655443 344444433322111  12335567889999999999999999999998776543


Q ss_pred             CceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         593 GRYEITH-TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       593 ~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ....... ....+.|.|.++...|.|.|+|.|.|..|..+....+.+
T Consensus       163 ~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          163 RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            2221111 111457999999999999999999999998776655543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.55  E-value=6.8e-14  Score=150.45  Aligned_cols=184  Identities=17%  Similarity=0.113  Sum_probs=126.8

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CE---Eee-------------cCCcEEEEec--CCeeEEEEeecC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GF---EIF-------------SSRRQRIVTD--NDISTLIIHQAA  516 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~---~~~-------------~~~~~~~~~~--~~~~~l~I~~l~  516 (1101)
                      |..+.+.+|++++|.|.+.+.|  .+.+.|+++  +.   .+.             ...++.+...  ++..+|+|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            4456789999999999999875  688999985  21   111             1245655543  456799999999


Q ss_pred             CCCCEEEEEEEEeCCCc------e---EEEEEEeeccCCcc------------ccCCCCCCCeEEeeCCEEEEEEEEeec
Q psy8139         517 LMDEGEIKCTATNRAGH------S---ITKARLRLEAPPTI------------RLPKQYEDGLLFEMGEIIKLKVSMAGM  575 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~------~---~~s~~l~V~~~p~~------------~~~~~~~~~~~v~~g~~~~l~c~~~g~  575 (1101)
                      ..|+|.|.|.|.|..|.      .   ...+.|.|..+|..            ......+..+.+..|++++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            99999999999998651      1   12356777765310            000011223457789999999999999


Q ss_pred             CCCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         576 PPPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       576 p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      +.+.+.|++  +|..+.            ...++.+...+...+|.|.++...|+|.|.|.|.|....-.....|.|...
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~  246 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAA  246 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCC
Confidence            989999999  554331            124555554555678999999999999999999997511122345555544


Q ss_pred             C
Q psy8139         642 P  642 (1101)
Q Consensus       642 P  642 (1101)
                      +
T Consensus       247 ~  247 (257)
T 1f3r_B          247 E  247 (257)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.54  E-value=1.2e-13  Score=147.66  Aligned_cols=186  Identities=13%  Similarity=0.123  Sum_probs=127.9

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--EE---e--------------ecCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--FE---I--------------FSSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~~---~--------------~~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+.+|++++|.|.+.+.|  .+.+.|+++.  ..   +              ....++.+...  ++..+|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3457899999999999999887  6789999832  11   1              01245555543  45678999999


Q ss_pred             CCCCCEEEEEEEEeCCCce--EEEEEEeeccCCcc---------ccCC---CCCCCeEEeeCCEEEEEEEEeecCCCeeE
Q psy8139         516 ALMDEGEIKCTATNRAGHS--ITKARLRLEAPPTI---------RLPK---QYEDGLLFEMGEIIKLKVSMAGMPPPTAR  581 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g~~--~~s~~l~V~~~p~~---------~~~~---~~~~~~~v~~g~~~~l~c~~~g~p~~~v~  581 (1101)
                      ...|+|.|.|.|.|..+..  ...+.|.|..+|..         ..++   ..+..+.+..|+++.|.|.+.+.+.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence            9999999999999974322  22356777754310         0011   11224467889999999999999999999


Q ss_pred             EEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEecCCCCC
Q psy8139         582 WLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTVTDRPLPP  645 (1101)
Q Consensus       582 W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~~~P~~P  645 (1101)
                      |++  ++..+.            ...++.+...+...+|.|.++...|.|.|+|.|.|..+.. .....|.|. .+.+|
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~-~~~~p  246 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK-SGLVP  246 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-CSCCC
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC-CCCCC
Confidence            998  554331            1345555545557789999999999999999999864432 234456665 33443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.54  E-value=5.5e-14  Score=146.99  Aligned_cols=174  Identities=13%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             eeeecCceeEEccCCeEEEEEEEecc-CCCeEEEEECC---EE------------ee---cCCcEEEEecCCeeEEEEee
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDG---FE------------IF---SSRRQRIVTDNDISTLIIHQ  514 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g---~~------------~~---~~~~~~~~~~~~~~~l~I~~  514 (1101)
                      .+...| .+.+.+|++++|.|.+.+. |.+.+.|++..   ..            ..   ...++.+...++..+|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344556 7889999999999999999 89999999821   10            00   11355555556667899999


Q ss_pred             cCCCCCEEEEEEEEeCCC-----ceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEE
Q psy8139         515 AALMDEGEIKCTATNRAG-----HSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWL  583 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g-----~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~  583 (1101)
                      +...|+|.|.|.+.|..|     .....+.|.|..    +|.+...+.   ...+..|+.+.|.|.+.+ .|.+ .+.|+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~---~~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPP---SSEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCC---CcccccCCcEEEEEEECcccCCCeEEEEE
Confidence            999999999999999876     222345777773    343322111   112335788999999998 5666 89999


Q ss_pred             ECCeecCCCCceE--EEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         584 HNGEPLTSGGRYE--ITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       584 ~~g~~l~~~~~~~--~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      ++|.++..+....  ....+.   ...|.|......|.|.|+|.|.|..|...
T Consensus       159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            9999886521110  000111   23477777777789999999999876543

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.54  E-value=1e-13  Score=157.43  Aligned_cols=307  Identities=14%  Similarity=0.102  Sum_probs=133.1

Q ss_pred             ceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCC-CCeeEEEEeCCCC-C-CCcCeeEEEEEEEecCCCce
Q psy8139         319 PLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLD-RDVFTIRWEPPEY-D-GGSPVLGYLVEHRRTGSPYW  395 (1101)
Q Consensus       319 g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~-~~sv~l~W~~p~~-~-g~~~i~~Y~v~~~~~~~~~w  395 (1101)
                      +.+..++.|..|.+..++..+    .|.||..+.+   . +.+ .+++.|+|.+|.. + .+..+..|.|+++..+...|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~v----~~~pP~nl~v---~-~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w   81 (380)
T 3lb6_C           10 CLYTFLISTTFGCTSSSDTEI----KVNPPQDFEI---V-DPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETW   81 (380)
T ss_dssp             -------------------------CCCCCEEEEE---E-CCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSC
T ss_pred             hhhhheeecccccccCCcccc----cCCcCCceEE---E-ecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcc
Confidence            445666666666554433222    3555555555   2 455 6899999999864 2 22358899999998777778


Q ss_pred             EEcCccccccceEEEcCccCCccEEEEEEEEec----CCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEE
Q psy8139         396 VRASPHMVEDTELMVSGLEPGWRYQFRITAENV----VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE  471 (1101)
Q Consensus       396 ~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~----~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~  471 (1101)
                      ......    .+....++..+..|.|+|.|.|.    .|.+.+|.++..++....  ...||   ..|.          .
T Consensus        82 ~~~~~~----~~~~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~--eg~P~---~~P~----------n  142 (380)
T 3lb6_C           82 KTIITK----NLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISP--QGIPE---TXVQ----------D  142 (380)
T ss_dssp             EEEEES----SSEEEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCC--CSCTT---SSCE----------E
T ss_pred             eEEEec----cEEEEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCC--CCCCC---CCCc----------E
Confidence            876432    22344566668999999999965    676666644433332111  11111   1233          3


Q ss_pred             EEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccC
Q psy8139         472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP  551 (1101)
Q Consensus       472 L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~  551 (1101)
                      +.|.........++|...... ..                      ...  |........+...                
T Consensus       143 l~C~~~~~~~l~csW~p~~~~-~~----------------------~~~--Y~l~y~~~~~~~~----------------  181 (380)
T 3lb6_C          143 MDCVYYNWQYLLCSWKPGIGV-LL----------------------DTN--YNLFYWYEGLDHA----------------  181 (380)
T ss_dssp             EEEEEETTTEEEEEEECC-----------------------------CC--EEEEEECTTCSSC----------------
T ss_pred             eEEEECCCcEEEEEEcCCCCC-CC----------------------Ccc--EEEEEEECCCCcc----------------
Confidence            444444333334455321100 00                      001  2211111100000                


Q ss_pred             CCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEE--ccCCCCCCeEEEEEEEeCCCC
Q psy8139         552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI--SDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       552 ~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i--~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                                      ..|...         ...              .+....+.+  .++...+.|.+.+.|.|..|.
T Consensus       182 ----------------~~C~~~---------~~~--------------~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~  222 (380)
T 3lb6_C          182 ----------------LQCVDY---------IKA--------------DGQNIGCRFPYLEASDYKDFYICVNGSSENKP  222 (380)
T ss_dssp             ----------------EECSEE---------EEC----------------CEEEEECCCCTTCSSSCEEEEEEEC-----
T ss_pred             ----------------ccCCCc---------ccc--------------CCceEEEEeCCCcccceeEEEEEEEEEcCCee
Confidence                            011000         000              000112222  245567789999999998887


Q ss_pred             ceeE-EEEEEe--cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEE
Q psy8139         630 DVAS-FLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTI  706 (1101)
Q Consensus       630 ~~~s-~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l  706 (1101)
                      .... ..+...  ..|+||.++.+....++++.|+|++|..                                       
T Consensus       223 ~~s~~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~~---------------------------------------  263 (380)
T 3lb6_C          223 IRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLG---------------------------------------  263 (380)
T ss_dssp             CCCEEEEECGGGSCCCCCCEEEEEC-------CEEEECCSS---------------------------------------
T ss_pred             eccccEEEcHHHcccCCCCceEEEEEcCCCeEEEEECCCCC---------------------------------------
Confidence            5432 233332  3688888888776666677777776542                                       


Q ss_pred             EeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcC-CCCCceEEEEEEEEcC---CccCCCCCCCCcEEe
Q psy8139         707 RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG-LEPGWRYQFRITAENV---VGFSEPGPLSEPLTV  782 (1101)
Q Consensus       707 ~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~t~Y~~~V~A~n~---~G~g~~S~~s~~~t~  782 (1101)
                             ..++.+.+|.|.|+.. +..|.....    .+++.|.+ |.|++.|.|+|+|...   .+.|.+|++|.....
T Consensus       264 -------~~~~~~l~Yev~y~~~-~~~w~~~~~----~~~~~l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~  331 (380)
T 3lb6_C          264 -------PIPARCFDYEIEIRED-DTTLVTATV----ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCW  331 (380)
T ss_dssp             -------SCCSTTEEEEECC---------CCEE----SSSCC------------CCEEEEECTTTCSSCCCCCCCCC---
T ss_pred             -------CCCcceEEEEEEEEeC-CCCceEecc----cceEEEeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEE
Confidence                   2223478899998885 346655332    13577888 9999999999999855   355677888877766


Q ss_pred             c
Q psy8139         783 T  783 (1101)
Q Consensus       783 ~  783 (1101)
                      .
T Consensus       332 ~  332 (380)
T 3lb6_C          332 E  332 (380)
T ss_dssp             -
T ss_pred             e
Confidence            4

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.54  E-value=4.1e-14  Score=146.99  Aligned_cols=170  Identities=15%  Similarity=0.149  Sum_probs=120.9

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEe------------ecCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEI------------FSSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~------------~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      |..+.+..|++++|.|.+.+.|.+.+.|+++  |..+            ....++.+...++...|.|.++...|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            7788899999999999999999899999984  2211            1124566655566779999999999999999


Q ss_pred             EEEEeCCCceEE-EEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCC-CeeEEEECCeecCCC-Cc-eE
Q psy8139         525 CTATNRAGHSIT-KARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPP-PTARWLHNGEPLTSG-GR-YE  596 (1101)
Q Consensus       525 C~a~n~~g~~~~-s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~-~~v~W~~~g~~l~~~-~~-~~  596 (1101)
                      |.|.|..|.... ...|.|..   +|.+...+..   ..+..|+.+.|.|.+.| .|. +.+.|+++|..+..+ .. ..
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~---~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  163 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS---TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT  163 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCC---HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc---hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence            999998765432 34667765   3443321111   01235889999999997 454 389999999988654 11 11


Q ss_pred             EEeecc-----eEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         597 ITHTDR-----YLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       597 ~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      .....+     .+.|.|..+...|.|.|+|.|.|......
T Consensus       164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP  203 (210)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred             CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence            111111     34789999999999999999999876543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.54  E-value=1.9e-14  Score=146.19  Aligned_cols=146  Identities=16%  Similarity=0.305  Sum_probs=109.4

Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEee-cCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ-AALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~-l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ...|+++.|.|.+.+ |. .++|+++|..+...         ...+|.|.+ +...|+|.|+|.|.|..|.......+.|
T Consensus        11 ~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            467999999999988 44 49999999988653         122799999 9999999999999999888555555544


Q ss_pred             ccCCcccc------------C----CCC-C--CCe---EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee
Q psy8139         543 EAPPTIRL------------P----KQY-E--DGL---LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT  600 (1101)
Q Consensus       543 ~~~p~~~~------------~----~~~-~--~~~---~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~  600 (1101)
                      ...+....            +    +.. .  ...   .+..|+++.|.|.+   |.|.+.|+++|..+.....      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~------  150 (186)
T 1jbj_A           80 GSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA------  150 (186)
T ss_dssp             CSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC------
T ss_pred             ecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC------
Confidence            43211110            0    000 0  011   23389999999988   7899999999998864322      


Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                       ....|.|.++.+.|.|.|+|.|.|..|..
T Consensus       151 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 -TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence             35678999999999999999999998865

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.54  E-value=2.9e-14  Score=157.00  Aligned_cols=174  Identities=11%  Similarity=0.018  Sum_probs=112.0

Q ss_pred             CCcceEEEEEEeCCCCCceeec-ccccCccEEEEc--CCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCc
Q psy8139         717 SPVLGYLVEHRRTGSPYWVRAS-PHMVEDTELMVS--GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS  793 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~~~~~~~-~~~~~~~~~~i~--~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~  793 (1101)
                      +++. |.|+|+..+...|.... -.....+.+.++  +|.|++.|.|||.|.| .|.|++|....+.+..  ..+++||.
T Consensus        31 ~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~--~~~~~pP~  106 (306)
T 3s98_A           31 GNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFR--KAQIGPPE  106 (306)
T ss_dssp             --CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEEC-SSCEEEEECCCBCHHH--HCBCCCCE
T ss_pred             CCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEEe-CCcCCCEeeeeEechh--hCccCCCe
Confidence            3455 99999988777897642 122345566554  5689999999999999 8877766444333322  45667776


Q ss_pred             ccccccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCC
Q psy8139         794 FIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAP  873 (1101)
Q Consensus       794 ~~~~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~  873 (1101)
                      ......++++.+.|.|+.. ++.     ....++.++            .|.|.|+..+....|. .......+.+.+|.
T Consensus       107 v~~~~~~~si~v~w~P~~~-~~~-----~~~~~g~~l------------~Y~v~y~~~~~~~~~~-~~~~~~~~~l~~L~  167 (306)
T 3s98_A          107 VHLEAEDKAIVIHISPGTK-DSV-----MWALDGLSF------------TYSLVIWKNSSGVEER-IENIYSRHKIYKLS  167 (306)
T ss_dssp             EEEEECSSCEEEEEECC----CC-----CC-----CC------------EEEEEEEETTTCCCEE-EEEECTEEEECSCC
T ss_pred             EEEEEcCCEEEEEEECCCC-CCc-----ceeccCCcE------------EEEEEEEECCCCCeEE-EecccceEEEccCC
Confidence            4334344577788886542 210     011235566            9999888777555554 23333455555555


Q ss_pred             CCCCCccCcccce--eeccc--cccc---CceeecccCCCCccCCCCCChhhhh
Q psy8139         874 SDNENESDYFPEK--TIDES--VYGY---DTIVYGYDSDDLDRHYPTLDEEEEE  920 (1101)
Q Consensus       874 ~~l~~~~~~t~Y~--V~a~n--~~G~---~~~v~~~t~e~~P~~~P~~v~~~~~  920 (1101)
                             +++.|.  |+|.|  ..|.   |..+...|.++.|..+|.||.+.+.
T Consensus       168 -------p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~  214 (306)
T 3s98_A          168 -------PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ  214 (306)
T ss_dssp             -------TTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEE
T ss_pred             -------CCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEe
Confidence                   999999  99999  3343   7778888888899999999999877

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.53  E-value=2.1e-13  Score=148.26  Aligned_cols=191  Identities=16%  Similarity=0.201  Sum_probs=130.6

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC-----EEee---------cCCcEEEEecCCeeEEEEeecCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-----FEIF---------SSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g-----~~~~---------~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      .+.+...|.++.+.+|++++|.|.+.+.|.+.+.|++++     ..+.         ...++.+...++..+|+|.++..
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            445667788899999999999999999999999999853     1221         13466666566677999999999


Q ss_pred             CCCEEEEEEEEeCCCce-EEEEEEeeccCCc-------------cccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeE
Q psy8139         518 MDEGEIKCTATNRAGHS-ITKARLRLEAPPT-------------IRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTAR  581 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~-~~s~~l~V~~~p~-------------~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~  581 (1101)
                      .|+|.|.|.+.|..+.. ...+.|.|..+|.             +..  ..+....+..|+++.|.|.+.+.+  .+.+.
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~--~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~  169 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQL--VESGGGLVQPGGSLRLSCAASGFTISDYWIH  169 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEE--EEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEE--ECCCceEecCCCeEEEEEEecCccCCCCEEE
Confidence            99999999999976542 2335677766542             111  112345788899999999999876  58999


Q ss_pred             EEECC--eec-----------------CCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCC---CC--ceeEEE
Q psy8139         582 WLHNG--EPL-----------------TSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSL---GE--DVASFL  635 (1101)
Q Consensus       582 W~~~g--~~l-----------------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~---G~--~~~s~~  635 (1101)
                      |++++  ...                 ....++.+...  ....+|.|.++...|+|.|.|.|.|..   +.  -.....
T Consensus       170 W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~  249 (276)
T 3auv_A          170 WVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTL  249 (276)
T ss_dssp             EEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEE
T ss_pred             EEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEE
Confidence            99853  111                 11235555432  345689999999999999999999984   22  122456


Q ss_pred             EEEecCCCC
Q psy8139         636 VTVTDRPLP  644 (1101)
Q Consensus       636 l~v~~~P~~  644 (1101)
                      |.|...|..
T Consensus       250 l~V~~~~~~  258 (276)
T 3auv_A          250 VTVSSASAA  258 (276)
T ss_dssp             EEEC-----
T ss_pred             EEEcccccc
Confidence            666644433

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.53  E-value=1.3e-14  Score=151.55  Aligned_cols=194  Identities=11%  Similarity=0.010  Sum_probs=126.4

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|++|.++.+...+.+++.|+|++|.+.+                                               + .
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~-----------------------------------------------~-~   37 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH-----------------------------------------------L-E   37 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCS-----------------------------------------------S-C
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCCCCCC-----------------------------------------------C-C
Confidence            567777777777766677777777654332                                               1 3


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCC-CCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCccccc-
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL-EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA-  797 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~~-  797 (1101)
                      ++|.|+|+..++..+.. .......++++|.+| .|++.|.|+|.|.|..|.+.. ..  .........++.||.++.. 
T Consensus        38 ~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s-~~--~~~~~~~~~~p~pP~~~~~~  113 (215)
T 1bqu_A           38 TNFTLKSEWATHKFADC-KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DH--INFDPVYKVKPNPPHNLSVI  113 (215)
T ss_dssp             CEEEEEEEETTEECCCE-ECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEEC-CC--EEECGGGSEECCCCEEEEEE
T ss_pred             ceEEEEEEEcCCCcccc-ccccCCcceEEEcCCccccccEEEEEEEEecccCccC-Cc--EEecccccCcCCCCCceEEE
Confidence            57777777654322222 222356689999999 999999999999999998752 21  2222222456677877652 


Q ss_pred             -c--cccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCC
Q psy8139         798 -L--HDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPS  874 (1101)
Q Consensus       798 -~--~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~  874 (1101)
                       .  .++++.+.|.+|..            .+++++            .|.|.|+..+ +..|....+.  .........
T Consensus       114 ~~~~~~~sv~l~W~~p~~------------~~~~i~------------~Y~v~y~~~~-~~~~~~~~~~--~~~~~~~~~  166 (215)
T 1bqu_A          114 NSEELSSILKLTWTNPSI------------KSVIIL------------KYNIQYRTKD-ASTWSQIPPE--DTASTRSSF  166 (215)
T ss_dssp             CC--CCSCEEEEEECCGG------------GGTSCE------------EEEEEEEETT-CSSCEECCGG--GGCSCCSEE
T ss_pred             EecCCCceEEEEEeCCCC------------CCcceE------------EEEEEEccCC-CCCceEeccc--cccCccceE
Confidence             2  55778888977432            234455            8999998876 4557654221  001122223


Q ss_pred             CCCCccCcccce--eeccccccc------CceeecccCCCCccCCC
Q psy8139         875 DNENESDYFPEK--TIDESVYGY------DTIVYGYDSDDLDRHYP  912 (1101)
Q Consensus       875 ~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e~~P~~~P  912 (1101)
                      .+.+|.+.+.|.  |+|.|..|.      +..+...|.+++|..+|
T Consensus       167 ~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~~~p  212 (215)
T 1bqu_A          167 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP  212 (215)
T ss_dssp             EECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             EeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCcCCC
Confidence            344455999999  999998875      56677888888887766

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.52  E-value=2.4e-13  Score=145.97  Aligned_cols=179  Identities=11%  Similarity=0.144  Sum_probs=128.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEEe---e--------------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFEI---F--------------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~~---~--------------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+.+|++++|.|.+.+.|  .+.+.|+++  +..+   .              ...++.+...  ++..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            45567899999999999998875  678999983  2211   0              1245555543  4567899999


Q ss_pred             cCCCCCEEEEEEEEeCCCc-----eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-----eeEEEE
Q psy8139         515 AALMDEGEIKCTATNRAGH-----SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-----TARWLH  584 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~-----~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-----~v~W~~  584 (1101)
                      +...|+|.|.|.+.|..|.     ......|.|..+|.+...|   ..+.+..|++++|.|.+.+.|.+     .+.|++
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p---~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTP---LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEEC---SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecC---cEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            9999999999999998763     1224577787666554333   24468899999999999998865     999999


Q ss_pred             --CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEe
Q psy8139         585 --NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTVT  639 (1101)
Q Consensus       585 --~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~  639 (1101)
                        +|..+.            ...++.........+|.|.++.+.|+|.|+|.|.|..+.. .....|.|.
T Consensus       163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence              554331            1245555545557789999999999999999999854322 223445664

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.52  E-value=2.7e-14  Score=150.79  Aligned_cols=168  Identities=16%  Similarity=0.208  Sum_probs=118.3

Q ss_pred             cCceeEEccCCeEEEEEEEeccCC-CeEEEEECCEE-----ee----cCC--cEEEE----------ecCCeeEEEEeec
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPT-PKVSWYKDGFE-----IF----SSR--RQRIV----------TDNDISTLIIHQA  515 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~g~~-----~~----~~~--~~~~~----------~~~~~~~l~I~~l  515 (1101)
                      .|.++.+..|+++.|.|.+.+.|. +.+.|++++..     +.    ...  ...+.          ... .+.|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L~i~~v   84 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-QGRLVLAEA   84 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-TCCEEESSC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-CceEEEccc
Confidence            466788999999999999999985 89999975422     11    010  11111          111 124999999


Q ss_pred             CCCCCEEEEEEEEeCC-CceEEEEEEeeccCCccccCCCCCCCeEEeeCCEE-EEEEEE-eecCCCeeEEEECCeecCCC
Q psy8139         516 ALMDEGEIKCTATNRA-GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII-KLKVSM-AGMPPPTARWLHNGEPLTSG  592 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~-g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~-~l~c~~-~g~p~~~v~W~~~g~~l~~~  592 (1101)
                      ...|+|.|+|.+.+.. |.....+.|.|..+|..+..........+..|..+ .|.|.+ .+.|.+.+.|+++|..+...
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccc
Confidence            9999999999999987 77777788999877543221111122344568877 999999 89999999999999988755


Q ss_pred             C----ceEEEeec----c-----eEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         593 G----RYEITHTD----R-----YLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       593 ~----~~~~~~~~----~-----~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .    ++.+....    .     .+.|.|......+.|.|+|.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          165 VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             cccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            4    34333211    0     155777755555699999999995

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.52  E-value=3.7e-13  Score=137.64  Aligned_cols=132  Identities=29%  Similarity=0.458  Sum_probs=111.6

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|....     ...+.+.. ...+|.+...+....+..|+.+.|.|.+.|.|.+.+.
T Consensus        63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~-----~~~l~v~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  136 (194)
T 2a38_A           63 AKLTIPAVTKANSGRYSLKATNGSGQATS-----TAELLVKA-ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK  136 (194)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEE-----EEEEEEEC-CCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCceEeE-----EEEEEEcc-CCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEE
Confidence            57999999999999999999998775432     23343332 2356777777888889999999999999999999999


Q ss_pred             EEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       486 W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      |+++|..+.....+.+...+....|.|.++...|.|.|+|.|.|..|....++.|.|.
T Consensus       137 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             EEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            9999999988888888777777799999999999999999999999998888877763

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.51  E-value=1.6e-13  Score=141.40  Aligned_cols=169  Identities=12%  Similarity=0.054  Sum_probs=117.6

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.+...|. ..+.+|++++|.|.+.+ |.+.+.|+++|..+...... ..........|.|.++...|+|.|+|.+.
T Consensus         6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            35677777776 67889999999999974 77899999988654321110 01112234589999999999999999998


Q ss_pred             eCCC-----ceEEEEEEeeccC---CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee
Q psy8139         529 NRAG-----HSITKARLRLEAP---PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT  600 (1101)
Q Consensus       529 n~~g-----~~~~s~~l~V~~~---p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~  600 (1101)
                      |..+     ..+....|.|...   |.+...+.    ..+..|+.++|.|.+.+ +.+.+.|+++|..+...........
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~----~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~  158 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG----PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN  158 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC----SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCC----CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC
Confidence            7532     2233456777653   44433322    26789999999999886 5689999999987653221111111


Q ss_pred             -cceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         601 -DRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       601 -~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                       .....|.|.+++  |.|.|+|.|.+..
T Consensus       159 ~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          159 GTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             TEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             CceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence             126789999998  9999999998753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.51  E-value=7.7e-14  Score=145.03  Aligned_cols=170  Identities=12%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...| .+.+.+|++++|.|.+.  |.+.+.|+++  +....            ...++.+....+..+|.|.++...|+|
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence            3344 77899999999999998  8889999983  22111            224566555666779999999999999


Q ss_pred             EEEEEEEeCCC--ceEEEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEeec--CCCeeEEEECCeecCCCC
Q psy8139         522 EIKCTATNRAG--HSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM--PPPTARWLHNGEPLTSGG  593 (1101)
Q Consensus       522 ~Y~C~a~n~~g--~~~~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~--p~~~v~W~~~g~~l~~~~  593 (1101)
                      .|.|.+.|..|  .....+.|.|.    .+|.+...+..   ..+..|..+.|.|.+.|.  |.+.+.|+++|..+..+.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~---~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  158 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS---SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV  158 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC---HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCc---hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCc
Confidence            99999999887  23345677777    34544332211   122258999999999985  358999999999876421


Q ss_pred             ceE--EEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         594 RYE--ITHTDR----YLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       594 ~~~--~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      ...  ....++    ...|.|..+...|.|.|+|.|.|..|...
T Consensus       159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~  202 (211)
T 3tv3_L          159 ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  202 (211)
T ss_dssp             EECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             ccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEE
Confidence            110  001111    35688888888899999999999876543

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.50  E-value=3.6e-12  Score=141.32  Aligned_cols=122  Identities=18%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             CCCeEEEEEEEeCCCCceeE-EEEEEe--cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCC
Q psy8139         614 ADRGEYQAHGVNSLGEDVAS-FLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKP  690 (1101)
Q Consensus       614 ~~~y~y~c~A~N~~G~~~~s-~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p  690 (1101)
                      .+.|.|++.|.|..|.+..+ ..+.+.  ..|+||.++.+. ...+++.|+|.+|...                      
T Consensus       169 ~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~~~----------------------  225 (314)
T 3bpo_C          169 FEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNF----------------------  225 (314)
T ss_dssp             ---CCEEEEEEETTSCSCCEEEEECSSSSEECCCCEEEEEE-EETTEEEEEEECCTTC----------------------
T ss_pred             eeEEEEEEEEEcCCCceecccEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCCcc----------------------
Confidence            56899999999998877544 222222  358999988876 6677888888876421                      


Q ss_pred             cccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc------------cccCccEEEEcCCCCCceE
Q psy8139         691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP------------HMVEDTELMVSGLEPGWRY  758 (1101)
Q Consensus       691 ~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~------------~~~~~~~~~i~~L~p~t~Y  758 (1101)
                                               ++.+++|.|.|+..++..|.....            .....+.++|.+|.|++.|
T Consensus       226 -------------------------~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y  280 (314)
T 3bpo_C          226 -------------------------ISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLN  280 (314)
T ss_dssp             -------------------------CGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCE
T ss_pred             -------------------------CCceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEE
Confidence                                     123678999999887777764221            1145678999999999999


Q ss_pred             EEEEEEEcCC----ccCCCCCCCCcEEec
Q psy8139         759 QFRITAENVV----GFSEPGPLSEPLTVT  783 (1101)
Q Consensus       759 ~~~V~A~n~~----G~g~~S~~s~~~t~~  783 (1101)
                      .|+|+|.+..    +.|.+|++|......
T Consensus       281 ~~qVra~~~~~~~~~~g~WS~WS~~~~~~  309 (314)
T 3bpo_C          281 TVRIRVKTNKLCYEDDKLWSNWSQEMSIG  309 (314)
T ss_dssp             EEEEEEEECTTTSCCCCCCCCCCCCEEES
T ss_pred             EEEEEeeecccccCCCCeeCCCCCCeEec
Confidence            9999999973    467788888888765

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.50  E-value=1.4e-13  Score=143.25  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=122.2

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC---E--Eee---------cCCcEEEEecCCeeEEEEeecCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG---F--EIF---------SSRRQRIVTDNDISTLIIHQAALM  518 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g---~--~~~---------~~~~~~~~~~~~~~~l~I~~l~~~  518 (1101)
                      |.+...|..+.+.+|++++|.|.+.+.|.+.+.|++.+   .  .+.         ...++.+...++..+|.|.++...
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            34556678889999999999999999999999999832   1  111         134666665666779999999999


Q ss_pred             CCEEEEEEEEeCCCceE-EEEEEee---ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCC--CeeEEEECCeecCCC
Q psy8139         519 DEGEIKCTATNRAGHSI-TKARLRL---EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP--PTARWLHNGEPLTSG  592 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g~~~-~s~~l~V---~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~--~~v~W~~~g~~l~~~  592 (1101)
                      |+|.|.|.|.|..+... ....|.|   ..+|.+...+.   ...+..|..+.|.|.+.+.++  +.+.|+++|..+..+
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~---~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPP---SSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCC---CceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            99999999998765332 2356776   34444432221   112335778999999998654  489999999888653


Q ss_pred             C--ceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         593 G--RYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       593 ~--~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      .  ........     ....+.|......+.|.|+|.|.|......
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA  204 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence            1  11111101     024577777777789999999999865433

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.50  E-value=2e-13  Score=146.38  Aligned_cols=187  Identities=12%  Similarity=0.138  Sum_probs=128.8

Q ss_pred             eecCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEE---e--------------ecCCcEEEEec--CCeeEEEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE---I--------------FSSRRQRIVTD--NDISTLII  512 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~---~--------------~~~~~~~~~~~--~~~~~l~I  512 (1101)
                      +..|..+.+.+|++++|.|.+.+.+  .+.+.|++.  +..   +              ....++.+...  .+..+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            4456678899999999999998844  678999982  211   1              01245555543  34567999


Q ss_pred             eecCCCCCEEEEEEEEeCCCceE-EEEEEeeccC---------------CccccCCCCCCCeEEeeCCEEEEEEEEeecC
Q psy8139         513 HQAALMDEGEIKCTATNRAGHSI-TKARLRLEAP---------------PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP  576 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~~~---------------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p  576 (1101)
                      .++..+|+|.|.|.+.|..+... ....|.|...               |.+...   +....+..|++++|.|.+.+.+
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~---p~~~~v~~G~~v~L~C~~~~~~  161 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT---PASLAVSLGQRATISCRASENV  161 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEE---CSEEEECTTSCEEEEEEESSCC
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECc---CCeEEEeCCCCEEEEEEecCcc
Confidence            99999999999999999665542 3456777642               222222   2245788999999999999988


Q ss_pred             CC----eeEEEEC--CeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEE
Q psy8139         577 PP----TARWLHN--GEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVT  637 (1101)
Q Consensus       577 ~~----~v~W~~~--g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~  637 (1101)
                      .+    .+.|+++  +....            ...++.....+...+|+|.++...|+|.|.|.|.|..+.. .....|.
T Consensus       162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~  241 (253)
T 3uzq_A          162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLE  241 (253)
T ss_dssp             EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEE
T ss_pred             ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEE
Confidence            76    9999984  22211            1245555555567789999999999999999999976533 2345677


Q ss_pred             EecCCCCC
Q psy8139         638 VTDRPLPP  645 (1101)
Q Consensus       638 v~~~P~~P  645 (1101)
                      |...+.+|
T Consensus       242 v~~~~~~~  249 (253)
T 3uzq_A          242 IKRPLEHH  249 (253)
T ss_dssp             ECCC----
T ss_pred             EcCCCCCc
Confidence            77655444

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.50  E-value=4.4e-14  Score=148.18  Aligned_cols=178  Identities=20%  Similarity=0.285  Sum_probs=122.8

Q ss_pred             eeEEccCCeEEEEEEEeccCC-----CeEEEEECCEEe-------------ecCCcEEEEe---cCCeeEEEEeecCCCC
Q psy8139         461 DTTALEDEKVEFTVQVEGIPT-----PKVSWYKDGFEI-------------FSSRRQRIVT---DNDISTLIIHQAALMD  519 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~-----~~v~W~~~g~~~-------------~~~~~~~~~~---~~~~~~l~I~~l~~~d  519 (1101)
                      .+.+..|++++|.|.+.+.|.     +.+.|++++...             ....+..+..   ..+..+|.|.++...|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            346789999999999988764     689999976322             0112222221   1124579999999999


Q ss_pred             CEEEEEEEEeCCCceEEEEEEeeccC---CccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEE-CCeecCCCCc
Q psy8139         520 EGEIKCTATNRAGHSITKARLRLEAP---PTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLH-NGEPLTSGGR  594 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g~~~~s~~l~V~~~---p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~-~g~~l~~~~~  594 (1101)
                      +|.|+|.+.+. +.......|.|..+   |.+...+    ...+..|..+.|.|.+ .+.|.+.+.|++ ++..+.....
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP----NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC---------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC----CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence            99999999986 44445556666654   3333332    2256779999999999 789999999998 4555543222


Q ss_pred             eEEEe--ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCC
Q psy8139         595 YEITH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL  643 (1101)
Q Consensus       595 ~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~  643 (1101)
                      .....  .+....+.|.++...|.|.|+|.|.|..|.......+.|.++|-
T Consensus       159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence            22221  12234578899999999999999999999999999999987763

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.50  E-value=2.2e-13  Score=139.26  Aligned_cols=160  Identities=16%  Similarity=0.205  Sum_probs=112.2

Q ss_pred             cCceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEee---cC---------------CcEEEEecCCeeEEEEeecCCC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIF---SS---------------RRQRIVTDNDISTLIIHQAALM  518 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~---~~---------------~~~~~~~~~~~~~l~I~~l~~~  518 (1101)
                      .|..+.+..|++++|.|.+.+ .+.+.|.|++++..+.   ..               .+..+.   ...+|.|.++...
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~   80 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME   80 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence            456678899999999999875 4557999999986542   10               122332   1348999999999


Q ss_pred             CCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCC-EEEEEEEEeec-CCCeeEEEECCeecCCCCceE
Q psy8139         519 DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGE-IIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYE  596 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~-~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~  596 (1101)
                      |+|.|.|.+.|..|.......|.|..++..+.....  ......|. .+.|.|.+.+. |.+.+.|+++|..+..+    
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~--~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~----  154 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH--SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ----  154 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEEC--CC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS----
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecC--ceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC----
Confidence            999999999999887766778888765432111000  01223455 89999999985 58999999998765432    


Q ss_pred             EEeecceEEEEEccCCC-CCCeEEEEEEEeCCCCceeE
Q psy8139         597 ITHTDRYLNLRISDARR-ADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       597 ~~~~~~~~sl~i~~l~~-~~~y~y~c~A~N~~G~~~~s  633 (1101)
                             ..|.|..... .|.|.|+|.|.|..|..+..
T Consensus       155 -------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          155 -------PNLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             -------SEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             -------CeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence                   2344443333 37999999999999976443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.49  E-value=5.1e-13  Score=143.53  Aligned_cols=178  Identities=11%  Similarity=0.095  Sum_probs=125.8

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEec--cCCCeEEEEECC--E---Eee--------------cCCcEEEEe--cCCe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKDG--F---EIF--------------SSRRQRIVT--DNDI  507 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g--~---~~~--------------~~~~~~~~~--~~~~  507 (1101)
                      .+|.+...+..+.+.+|++++|.|.+.+  .+.+.+.|++..  .   .+.              ...++.+..  .++.
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            5567788889999999999999999988  367789999732  1   110              123566553  3455


Q ss_pred             eEEEEeecCCCCCEEEEEEEEeC------------CCceEEEEEEeeccCCccc------------cCCCCCCCeEEeeC
Q psy8139         508 STLIIHQAALMDEGEIKCTATNR------------AGHSITKARLRLEAPPTIR------------LPKQYEDGLLFEMG  563 (1101)
Q Consensus       508 ~~l~I~~l~~~d~g~Y~C~a~n~------------~g~~~~s~~l~V~~~p~~~------------~~~~~~~~~~v~~g  563 (1101)
                      .+|+|.++..+|+|.|.|.+.|.            .+.......|.|..++...            .....+....+..|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            68999999999999999999986            2223334667777643210            00112234577889


Q ss_pred             CEEEEEEEEeecCC-CeeEEEEC--CeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         564 EIIKLKVSMAGMPP-PTARWLHN--GEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       564 ~~~~l~c~~~g~p~-~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      ++++|.|.+.+.+. +.+.|++.  +....            ...++.+...+...+|.|.++...|+|.|.|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999999876 89999872  22211            23455555556677899999999999999999998543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.49  E-value=9.1e-14  Score=150.52  Aligned_cols=183  Identities=15%  Similarity=0.229  Sum_probs=123.4

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEe---ccCCCeEEEEECCEEeec------------------CCcEEEEe--cCCeeE
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVE---GIPTPKVSWYKDGFEIFS------------------SRRQRIVT--DNDIST  509 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~---g~p~~~v~W~~~g~~~~~------------------~~~~~~~~--~~~~~~  509 (1101)
                      +.+...+..+.+.+|++++|.|.+.   +.|.+.+.|++++.....                  ..+..+..  ..+..+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3445566778899999999999987   777788999995431110                  12222211  122358


Q ss_pred             EEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEE---eecCCCeeEEEECC
Q psy8139         510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM---AGMPPPTARWLHNG  586 (1101)
Q Consensus       510 l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~---~g~p~~~v~W~~~g  586 (1101)
                      |.|.++...|+|.|+|.+.|..+.......+.+...|.      .+....+..|..+.|.|.+   .+.|.+.+.|++++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~  159 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS  159 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc------CCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence            99999999999999999999876654443333332221      1224578899999999999   56689999999843


Q ss_pred             ee-cCCC---------------------CceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139         587 EP-LTSG---------------------GRYEITH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       587 ~~-l~~~---------------------~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      .. ....                     .+..+..  .....+|.|.++...|.|.|+|.|.|..|.......|.|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence            21 1110                     0111110  123668999999999999999999999888888888888543

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.49  E-value=4e-13  Score=138.42  Aligned_cols=169  Identities=15%  Similarity=0.200  Sum_probs=114.9

Q ss_pred             eeEEccCCeEEEEEEEe----ccCCCeEEEEECCEEeec------------CCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         461 DTTALEDEKVEFTVQVE----GIPTPKVSWYKDGFEIFS------------SRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~----g~p~~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      .+.+..|++++|.|.+.    +.|.+.+.|.+++..+..            ..+..+. ..+..+|.|.++...|+|.|+
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            46788999999999985    457789999999987631            1222221 223458999999999999999


Q ss_pred             EEEEeCCCceE-----EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEE
Q psy8139         525 CTATNRAGHSI-----TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEIT  598 (1101)
Q Consensus       525 C~a~n~~g~~~-----~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~  598 (1101)
                      |.|.|..|...     ....|.|..++..   |... ......|+.+.|.|.+. |.|.|.+.|+++|..+.........
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~---p~~~-~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~  157 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPT---PSIS-DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ  157 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCC---CEEE-EEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCC---CceE-eccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEe
Confidence            99999876543     3566777654321   1000 00113478899999995 9999999999999888754322221


Q ss_pred             eec-ce-EEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         599 HTD-RY-LNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       599 ~~~-~~-~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      ... +. ....+..+...|.|.|+|.|.|..|..+...
T Consensus       158 ~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~  195 (201)
T 1dr9_A          158 DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTF  195 (201)
T ss_dssp             CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEE
T ss_pred             cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEE
Confidence            111 11 1222344556899999999999988765543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.49  E-value=3.3e-13  Score=143.01  Aligned_cols=179  Identities=11%  Similarity=0.096  Sum_probs=124.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Ee---------ecCCcEEEEecCCeeEEEEeecCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EI---------FSSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~---------~~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      .+.+...|..+.+..|++++|.|.+.+.|.+.+.|++.+  .   .+         ....++.....++..+|.|.++..
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            345566688889999999999999999999999999832  1   11         113466666566677999999999


Q ss_pred             CCCEEEEEEEEeCCCceE-EEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeec-C-CCeeEEEECCeecCC
Q psy8139         518 MDEGEIKCTATNRAGHSI-TKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-P-PPTARWLHNGEPLTS  591 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~-~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~  591 (1101)
                      .|+|.|.|.+.|..+... ....|.|..   +|.+...+.   ...+..|+.+.|.|.+.+. | .+.+.|+++|..+..
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPP---SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  180 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCC---ChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence            999999999998775332 234566643   333322111   1112347889999999984 4 589999999998864


Q ss_pred             CC--ceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         592 GG--RYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       592 ~~--~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      +.  ........     ....+.|......|.|.|+|.|.|........
T Consensus       181 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          181 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             ceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence            31  00001000     13568888888889999999999987654433

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.49  E-value=4.9e-13  Score=138.97  Aligned_cols=132  Identities=18%  Similarity=0.258  Sum_probs=96.3

Q ss_pred             ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec---CCC-CCCccEEEEe--cCCeEEEEeecCCCCCCcccce
Q psy8139         602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD---RPL-PPGKAKVVMT--LGKSVTLSWSEPEDDGGCKIGN  675 (1101)
Q Consensus       602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~---~P~-~P~~~~~~~~--~~~sv~lsW~~p~~~~g~~i~~  675 (1101)
                      ...++.|.+|.+++.|.|+|.|.|..|.+..+..+.+..   .|. +|.++.+...  +.+++.|+|.+|..        
T Consensus        62 ~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~--------  133 (211)
T 3p4l_A           62 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSE--------  133 (211)
T ss_dssp             SSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTT--------
T ss_pred             CceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCC--------
Confidence            356899999999999999999999999877655555554   343 6666666655  24566666665532        


Q ss_pred             eEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC---ceeecccccCccEEEEcCC
Q psy8139         676 YIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGL  752 (1101)
Q Consensus       676 Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~---~~~~~~~~~~~~~~~i~~L  752 (1101)
                                                             .+++|.+|.|+|+..+...   |.... ...+.++++|.+|
T Consensus       134 ---------------------------------------~~g~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L  173 (211)
T 3p4l_A          134 ---------------------------------------ANGKITGYIIYYSTDVNAEIHDWVIEP-VVGNRLTHQIQEL  173 (211)
T ss_dssp             ---------------------------------------CCSCCCEEEEEEESCTTSCGGGSEEEE-EESSCSEEEECCC
T ss_pred             ---------------------------------------CCCCEEEEEEEEEECCCCCCCceEEEE-ecCCeeEEEEcCC
Confidence                                                   2335788888887665432   33222 2367889999999


Q ss_pred             CCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         753 EPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       753 ~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .|++.|.|+|.|.|..|.|++|....+.+
T Consensus       174 ~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~  202 (211)
T 3p4l_A          174 TLDTPYYFKIQARNSKGMGPMSEAVQFRT  202 (211)
T ss_dssp             CTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             CCCCEEEEEEEEEcCCccCCCCCCEEccC
Confidence            99999999999999999999887654444

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.49  E-value=7.6e-13  Score=142.25  Aligned_cols=188  Identities=14%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             eeecCceeEEccCCeEEEEEEEecc--CCCeEEEEECC----EEee--------------cCCcEEEEec--CCeeEEEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDG----FEIF--------------SSRRQRIVTD--NDISTLII  512 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g----~~~~--------------~~~~~~~~~~--~~~~~l~I  512 (1101)
                      .+..|..+.+.+|++++|.|.+.+.  +.+.+.|++..    ....              ...++.+...  .+..+|.|
T Consensus        11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence            3455667789999999999999884  47799999832    1111              1234555432  34568999


Q ss_pred             eecCCCCCEEEEEEEEeCCCc----eEEEEEEeeccC--------------CccccCCCCCCCeEEeeCCEEEEEEEEee
Q psy8139         513 HQAALMDEGEIKCTATNRAGH----SITKARLRLEAP--------------PTIRLPKQYEDGLLFEMGEIIKLKVSMAG  574 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~----~~~s~~l~V~~~--------------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g  574 (1101)
                      .++..+|+|.|.|.|.|..+.    ....+.|.|..+              +.+...   +....+..|++++|.|.+.+
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~---p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS---PAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS---CSEEEECTTCCEEEEEEESS
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC---CceEEEeCCCcEEEEEEEcc
Confidence            999999999999999997322    223456777654              222222   23457889999999999999


Q ss_pred             cCCC-eeEEEEC--CeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy8139         575 MPPP-TARWLHN--GEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTV  638 (1101)
Q Consensus       575 ~p~~-~v~W~~~--g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v  638 (1101)
                      .+.+ .+.|++.  +....            ...++.....+...+|.|.++...|+|.|.|.|.|..... .....|.|
T Consensus       168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v  247 (257)
T 3gkz_A          168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEI  247 (257)
T ss_dssp             CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEE
Confidence            8877 9999983  22211            1244555555567789999999999999999998754322 12345666


Q ss_pred             ecCCCCC
Q psy8139         639 TDRPLPP  645 (1101)
Q Consensus       639 ~~~P~~P  645 (1101)
                      ...|.+|
T Consensus       248 ~~~~~~~  254 (257)
T 3gkz_A          248 KRAPHHH  254 (257)
T ss_dssp             CCC----
T ss_pred             EeCCCCC
Confidence            6444333

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.49  E-value=1.4e-13  Score=141.94  Aligned_cols=140  Identities=14%  Similarity=0.056  Sum_probs=96.0

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-  796 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-  796 (1101)
                      .+.+|.|+|+..+...+........+.++++|.+|.|++.|.|+|.|.|..|.|.+   +.+.+.+   .++ +|.++. 
T Consensus        50 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~---~~~~t~~---~~p-~P~~l~~  122 (203)
T 2gee_A           50 TIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTP---TTLTQQT---AVP-PPTDLRF  122 (203)
T ss_dssp             SCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESSSCBCCC---EEEEEEC---CCC-CCEEEEE
T ss_pred             CccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCCcccc---EeeeecC---CCc-CCCceEE
Confidence            47788888887765544333333367789999999999999999999999998654   3333333   333 566655 


Q ss_pred             -cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCC
Q psy8139         797 -ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSD  875 (1101)
Q Consensus       797 -~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~  875 (1101)
                       ...++++.+.|.+|.              ++++.            .|.|.|+.......|....+.     .......
T Consensus       123 ~~~~~~sv~l~W~~p~--------------~~~i~------------~Y~v~~~~~~~~~~~~~~~~~-----~~~~~~~  171 (203)
T 2gee_A          123 TNIGPDTMRVTWAPPP--------------SIDLT------------NFLVRYSPVKNEEDVAELSIS-----PSDNAVV  171 (203)
T ss_dssp             EEEETTEEEEEEECCS--------------SCCCS------------EEEEEEEETTCGGGCEEEEEC-----TTCCEEE
T ss_pred             EEcCCCEEEEEEcCCC--------------CCCcc------------EEEEEEEECCCCCccEEEEcC-----CCcCEEE
Confidence             556677888998752              23455            899999876654455544442     2222334


Q ss_pred             CCCccCcccce--eeccccccc
Q psy8139         876 NENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       876 l~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                      +.+|.+.+.|.  |+|.|..|.
T Consensus       172 i~~L~p~t~Y~~~V~A~~~~g~  193 (203)
T 2gee_A          172 LTNLLPGTEYVVSVSSVYEQHE  193 (203)
T ss_dssp             ECSCCTTCEEEEEEEEEETTEE
T ss_pred             ECCCCCCCEEEEEEEEecCCCc
Confidence            44455999999  999999998

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.48  E-value=3.7e-13  Score=142.84  Aligned_cols=172  Identities=16%  Similarity=0.232  Sum_probs=118.4

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEe---------------ecCCcEEEEe-cCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEI---------------FSSRRQRIVT-DNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~---------------~~~~~~~~~~-~~~~~~l~I~~l~  516 (1101)
                      +...|.++.+.+|++++|.|. .+.|.+.+.|+++  +...               ....++.+.. .....+|.|.++.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            445677889999999999999 7888999999985  2111               0123444443 2345589999999


Q ss_pred             CCCCEEEEEEEEeCCCceE-----EEEEEeeccCCccc---------cCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEE
Q psy8139         517 LMDEGEIKCTATNRAGHSI-----TKARLRLEAPPTIR---------LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARW  582 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~~-----~s~~l~V~~~p~~~---------~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W  582 (1101)
                      ..|+|.|.|.|.|..|...     ....|.|...+...         .....+..+.+..|+++.|.|.+.+.|.+.+.|
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W  161 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW  161 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence            9999999999999865311     23467776544210         000112345688999999999999999999999


Q ss_pred             EECCe--ec------------CCCCceEEE--eecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         583 LHNGE--PL------------TSGGRYEIT--HTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       583 ~~~g~--~l------------~~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      ++++.  ..            ....++.+.  ......+|.|.++...|+|.|+|.|.|..
T Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            98531  10            012334443  23345789999999999999999999984

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.48  E-value=4.9e-13  Score=143.08  Aligned_cols=172  Identities=15%  Similarity=0.194  Sum_probs=122.1

Q ss_pred             eeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC-----EEee---------cCCcEEEEecCCeeEEEEeecCCCC
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-----FEIF---------SSRRQRIVTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g-----~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d  519 (1101)
                      .+...|..+.+.+|++++|.|.+.+.|.+.+.|++..     ..+.         ...++.....++..+|.|.++..+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            3455677888999999999999999999999999842     1110         1345655556666789999999999


Q ss_pred             CEEEEEEEEeCCCceE-EEEEEeeccCCc----------------cccCCCCCCCeEEeeCCEEEEEEEEeecC--CCee
Q psy8139         520 EGEIKCTATNRAGHSI-TKARLRLEAPPT----------------IRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTA  580 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g~~~-~s~~l~V~~~p~----------------~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v  580 (1101)
                      +|.|.|.+.|..+... ....|.|..++.                .......+....+..|+++.|.|.+.+.+  .+.+
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  165 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWM  165 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEE
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEE
Confidence            9999999998766533 234677765320                00001112345788999999999999877  7899


Q ss_pred             EEEEC--CeecC-----------------CCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         581 RWLHN--GEPLT-----------------SGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       581 ~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .|+++  +..+.                 ...++.+...  ....+|.|.++.+.|+|.|.|.|.|
T Consensus       166 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          166 NWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            99986  43321                 1134444432  3456899999999999999999997

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.48  E-value=1.6e-12  Score=132.53  Aligned_cols=130  Identities=22%  Similarity=0.279  Sum_probs=109.2

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      .+..|.|.+++..|.|.|+|.|.|. |...     ..+.+.+.    .+|.+...+....+..|+.+.|.|.+.|.|.|.
T Consensus        54 ~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~-----~~~~l~V~----~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~  123 (190)
T 2wv3_A           54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPK-----ANATIEVK----AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE  123 (190)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEET-TEEE-----EEEEEEEE----CCCEEEEECSEEEEETTSCEEEEEEEECSSCCE
T ss_pred             ccEEEEEecCCcccCEEEEEEEEeC-Cccc-----ccEEEEEe----cCCcccccCCcceeeCCCcEEEEEEeCccCCCc
Confidence            3467999999999999999999997 4332     33455543    568888888888999999999999999999999


Q ss_pred             EEEEE--CCEEee---cCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         484 VSWYK--DGFEIF---SSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       484 v~W~~--~g~~~~---~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +.|++  ++..+.   ...++.+...+..+.|.|.++. ..|.|.|+|.|.|..|....++.|.|.
T Consensus       124 i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          124 WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            99999  787765   4566777766777799999999 799999999999999998888888775

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.48  E-value=9.1e-13  Score=137.02  Aligned_cols=139  Identities=24%  Similarity=0.341  Sum_probs=107.8

Q ss_pred             cceEEEcCc-cCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC---CCCCCeeeecCceeEEccCCeEEEEEEEeccC
Q psy8139         405 DTELMVSGL-EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS---PAAAPSFIRALHDTTALEDEKVEFTVQVEGIP  480 (1101)
Q Consensus       405 ~~~l~i~~L-~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~---~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p  480 (1101)
                      ...|.|.++ +..|.|.|+|.|.|..|...     ..+.+.+...   +...|.+...|....+..|+++.|.|.+.|.|
T Consensus        62 ~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~-----~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p  136 (212)
T 2yd6_A           62 GSVLRIQPLRTPRDEAIYECVASNNVGEIS-----VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP  136 (212)
T ss_dssp             EEEEEECSCCTTTTCEEEEEEEEETTEEEE-----EEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSS
T ss_pred             ceEEEEeccCCCCCCeEEEEEEEcCCCcEE-----EEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCC
Confidence            456999999 59999999999999887632     2344444332   23457788888888899999999999999999


Q ss_pred             CCeEEEEECCEEeecC---CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeeccCCcc
Q psy8139         481 TPKVSWYKDGFEIFSS---RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTI  548 (1101)
Q Consensus       481 ~~~v~W~~~g~~~~~~---~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~  548 (1101)
                      .+.+.|+++|..+...   .++.....+....|.|.++...|.|.|+|.|.|..|...+ .+.|.|..++.+
T Consensus       137 ~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             CCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             CCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence            9999999999988653   4555555566779999999999999999999999998765 477888776644

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.48  E-value=6.8e-13  Score=141.14  Aligned_cols=172  Identities=14%  Similarity=0.153  Sum_probs=120.6

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC-----EEee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-----FEIF---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g-----~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +...|.++.+.+|++++|.|.+.+.|.+.+.|+++.     ..+.         ...++.+...++..+|+|.++...|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            456677889999999999999999999999999842     1111         13456665556667999999999999


Q ss_pred             EEEEEEEEeCCCceE-EEEEEeeccCCcc----------ccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEEC--
Q psy8139         521 GEIKCTATNRAGHSI-TKARLRLEAPPTI----------RLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHN--  585 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~-~s~~l~V~~~p~~----------~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--  585 (1101)
                      |.|.|.+.|..+... ....|.|..+|..          ......+....+..|++++|.|.+.+.+  .+.+.|++.  
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  163 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFP  163 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCC
Confidence            999999998765322 2457777765530          0000011123578899999999999876  588999984  


Q ss_pred             CeecC----------------CCCceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         586 GEPLT----------------SGGRYEITH--TDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       586 g~~l~----------------~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      +..+.                ...++.+..  .....+|.|.+++..|+|.|.|.|.|.
T Consensus       164 ~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          164 GNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            22210                123444443  234568999999999999999999884

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.48  E-value=3.5e-13  Score=156.03  Aligned_cols=293  Identities=12%  Similarity=0.054  Sum_probs=166.5

Q ss_pred             ccCCCCCCeEEEEEEEeCCCCceeEEEEEEe--cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCC
Q psy8139         609 SDARRADRGEYQAHGVNSLGEDVASFLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP  686 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~  686 (1101)
                      ..+.....|.|++.|.|..|.   ...+.+.  ..|.||.++.+.... +.+.|+|++|......               
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~---------------  137 (419)
T 2gys_A           77 QSFVVTDVDYFSFQPDRPLGT---RLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQS---------------  137 (419)
T ss_dssp             SCCCTTCEEEEEEEESSCCCE---EEEEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC--------------------
T ss_pred             cceeeecccEEEEeCCccccc---cceEcHHHcccCCCCCceEEEecC-CeEEEEECCCcccccc---------------
Confidence            455556778899988776664   2222222  368999999887765 6888888876421100               


Q ss_pred             CCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEc--CCCCCceEEEEEEE
Q psy8139         687 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS--GLEPGWRYQFRITA  764 (1101)
Q Consensus       687 p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~A  764 (1101)
                                          .|      -....+.|.|.|+..+ ..|............+.+.  +|.|++.|.|+|+|
T Consensus       138 --------------------~~------~~~~~l~Y~v~yr~~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~~rVra  190 (419)
T 2gys_A          138 --------------------HW------LSPGDLEFEVVYKRLQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRT  190 (419)
T ss_dssp             --------------------CC------SCGGGEEEEEEEEETT-SCSTTCEEEEESSSEEEECTTTCCTTCEEEEEEEE
T ss_pred             --------------------ch------hccCceEEEEEEccCC-CChhheeeecccceEEEechhhcCCCCeEEEEEEE
Confidence                                00      0124678999999887 6776654422345666666  99999999999999


Q ss_pred             EcCC---ccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhh
Q psy8139         765 ENVV---GFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLF  839 (1101)
Q Consensus       765 ~n~~---G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  839 (1101)
                      .|..   |.|.+|+++..+...+...++.+|.++.  ....+.+.+.|.++            ....+ ..         
T Consensus       191 ~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~l~c~W~~~------------~~~~~-~~---------  248 (419)
T 2gys_A          191 RLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVR------------KEVAS-SV---------  248 (419)
T ss_dssp             EECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSEEEEEEEEE------------HHHHT-TC---------
T ss_pred             ecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceEEEeEEECC------------CCCCC-ce---------
Confidence            9975   5588999998887765444456677765  33445566788652            00001 12         


Q ss_pred             ceeeEEeeeeccCCC----CCCceeeeeccccccC------CCCCCCCCccCcccce--eecccccccCceeecccCCCC
Q psy8139         840 TFIETISSFRDKYVD----NEDDYDIVETNEHTGT------GAPSDNENESDYFPEK--TIDESVYGYDTIVYGYDSDDL  907 (1101)
Q Consensus       840 ~~~~Y~v~~r~~~~~----~~~~~~~v~~~~~~~~------~~~~~l~~~~~~t~Y~--V~a~n~~G~~~~v~~~t~e~~  907 (1101)
                         .|.+.|+.....    ..|...+.......+.      .....+..+.+++.|.  |.|.|+.|.   +.  +.+.+
T Consensus       249 ---~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~~---~~--~~~~v  320 (419)
T 2gys_A          249 ---SFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKH---IK--SSVNI  320 (419)
T ss_dssp             ---CEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCEE---EE--GGGSB
T ss_pred             ---eEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCcc---cc--ceEEE
Confidence               688877765321    1232222111000000      0011122344888898  777665553   00  11222


Q ss_pred             ccCCCCCChhhhhhhhhhhccc-ccccc-ccchhhcccccchhhhhhcccc-c-ccccccccCCceeEeecCCCCCCCce
Q psy8139         908 DRHYPTLDEEEEEEDRESLVKD-RESSV-KGKEEEAKVIKDDEYYENLGDV-L-TKKYSLPVNSDIQIKIDKPDDEPDYV  983 (1101)
Q Consensus       908 P~~~P~~v~~~~~~~n~t~v~v-p~~~~-nG~i~gY~I~~~~~~y~~~~~~-~-~~~~~l~~~~~~~~~i~~~~~~~~~~  983 (1101)
                      ...|| ++.+... .++..|.| ||... ...+.+|.|     .|+..++. . .....+.  ....+.|.+|.+|+.|.
T Consensus       321 ~p~PP-~l~v~~~-~~~l~l~W~~P~~~~~~~~l~Yev-----~y~~~~~~w~~~~~~~~~--~~~~~~l~~L~p~t~Y~  391 (419)
T 2gys_A          321 QMAPP-SLQVTKD-GDSYSLRWETMKMRYEHIDHTFEI-----QYRKDTATWKDSKTETLQ--NAHSMALPALEPSTRYW  391 (419)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC--------CEEEEE-----EEECSSSCSTTSCEEEEE--SCSEEECCCCCSSCCCE
T ss_pred             EECCC-CeEEEEe-CCeEEEEECCCcccccccceEEEE-----EEEcCCCCcceeeccccc--cccEEEeccCCCCCeEE
Confidence            34555 4555443 24555566 44322 125779999     88876543 1 1111122  45678999999999999


Q ss_pred             eec
Q psy8139         984 IKG  986 (1101)
Q Consensus       984 ~~~  986 (1101)
                      |..
T Consensus       392 ~qV  394 (419)
T 2gys_A          392 ARV  394 (419)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.48  E-value=4.3e-13  Score=143.37  Aligned_cols=177  Identities=13%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCe-----EEEEECCEEee--------cCCcEEEEe----------cCCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPK-----VSWYKDGFEIF--------SSRRQRIVT----------DNDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~-----v~W~~~g~~~~--------~~~~~~~~~----------~~~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|.+.+.|.+.     +.|++++....        .........          ..+..+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45567789999999999999888775     99998532111        000000000          11234699999


Q ss_pred             cCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEECCeecCCC
Q psy8139         515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHNGEPLTSG  592 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~g~~l~~~  592 (1101)
                      +...|+|.|+|.+.|..|.......|.|..+|.+...+.    ..+..|..+.|.|.+.| .|.+ .+.|+++|..+...
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~----~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~  164 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD----QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHP  164 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC------------CEEEEEEEEEBSSCCEEEEEEECSSSCSC
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC----CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCc
Confidence            999999999999999988877788999998887755433    13445777889999999 7888 99999998654321


Q ss_pred             C------c-eEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCcee--EEEEEE
Q psy8139         593 G------R-YEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGEDVA--SFLVTV  638 (1101)
Q Consensus       593 ~------~-~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~--s~~l~v  638 (1101)
                      .      . .......     ....|.|......+.|.|+|.|.|..+....  ...|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          165 IEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            0      0 0111111     1346778888888999999999999887544  445555

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.48  E-value=1.8e-13  Score=124.22  Aligned_cols=97  Identities=28%  Similarity=0.462  Sum_probs=89.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..||.|...|.++.+.+|+++.|.|.+.|.|.|.|+|+++|..+..+.++.+...++...|.|.++...|+|.|+|.|.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            46789999999999999999999999999999999999999999988888888888888999999999999999999999


Q ss_pred             CCCceEEEEEEeeccCC
Q psy8139         530 RAGHSITKARLRLEAPP  546 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p  546 (1101)
                      ..|....++.|.|..+|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999998765

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.48  E-value=1.1e-12  Score=143.03  Aligned_cols=184  Identities=14%  Similarity=0.166  Sum_probs=126.8

Q ss_pred             eecCceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E--E-ee--------------cCCcEEEEe--cCCeeEEEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F--E-IF--------------SSRRQRIVT--DNDISTLII  512 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~--~-~~--------------~~~~~~~~~--~~~~~~l~I  512 (1101)
                      ...|..+.+.+|++++|.|.+.+.|  .+.+.|++++  .  . +.              ...++.+..  .++..+|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            4456678899999999999998875  5789999853  1  1 10              124555554  234578999


Q ss_pred             eecCCCCCEEEEEEEEeCCCc---e--EEEEEEeeccCCcc---------ccCC---CCCCCeEEeeCCEEEEEEEEeec
Q psy8139         513 HQAALMDEGEIKCTATNRAGH---S--ITKARLRLEAPPTI---------RLPK---QYEDGLLFEMGEIIKLKVSMAGM  575 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~---~--~~s~~l~V~~~p~~---------~~~~---~~~~~~~v~~g~~~~l~c~~~g~  575 (1101)
                      .++..+|+|.|.|.+.|..|.   .  ...+.|.|..+|..         ..++   ..+..+.+..|++++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            999999999999999998761   1  12356777765420         0000   11224467889999999999999


Q ss_pred             CCCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEec
Q psy8139         576 PPPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTVTD  640 (1101)
Q Consensus       576 p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~~  640 (1101)
                      + +.+.|++  +|..+.            ...++.........+|+|.++...|+|.|.|.|.|..+.. .....|.|..
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            9 9999999  554431            1345655555567789999999999999999998854322 2244566653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.47  E-value=4.4e-13  Score=151.01  Aligned_cols=167  Identities=11%  Similarity=0.122  Sum_probs=117.1

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEEee-----------------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFEIF-----------------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..+  ++..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            34567889999999999998863  678999986  32210                 1345665543  3556899999


Q ss_pred             cCCCCCEEEEEEEEeCCCceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCee
Q psy8139         515 AALMDEGEIKCTATNRAGHSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEP  588 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~  588 (1101)
                      +..+|+|.|.|.|.|..+.....+.|.|..    +|.+...+..   ..+..|+.+.|.|.+.|. |. +.+.|+++|..
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPS---SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCS---CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEcccc---ccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            999999999999999655444456777763    3333211111   123579999999999987 54 79999999876


Q ss_pred             cCC---------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         589 LTS---------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       589 l~~---------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      +..         +..+..     .+.|.|..+...+ |.|+|.|.|..|.....
T Consensus       163 ~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~  210 (344)
T 1za6_B          163 SGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  210 (344)
T ss_dssp             TTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEE
T ss_pred             CceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccce
Confidence            421         112211     3478898888777 99999999998865433

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.47  E-value=1.3e-12  Score=151.12  Aligned_cols=102  Identities=18%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             eeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCC-----cCeeEEEEEEEecCCCceEEcCccccccceEEEc--
Q psy8139         339 CVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-----SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS--  411 (1101)
Q Consensus       339 ~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~-----~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~--  411 (1101)
                      ..-...|.||..+.+.    ..+ +.+.|+|.+|.....     .....|.|+++..+ ..|............+.+.  
T Consensus       103 ~~~~v~p~pP~~l~v~----~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~w~~~~~~~~~~~~~~~~~~  176 (419)
T 2gys_A          103 LTQHVQPPEPRDLQIS----TDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DSWEDAAILLSNTSQATLGPE  176 (419)
T ss_dssp             GGGSBCCCCCEEEEEE----EET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SCSTTCEEEEESSSEEEECTT
T ss_pred             HHHcccCCCCCceEEE----ecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-CChhheeeecccceEEEechh
Confidence            3334566666665542    333 699999999864321     24679999999875 5665443221233455665  


Q ss_pred             CccCCccEEEEEEEEecC---CCCCCCCCCcceEEEec
Q psy8139         412 GLEPGWRYQFRITAENVV---GFSEPGPLSEPLTVTYQ  446 (1101)
Q Consensus       412 ~L~p~d~y~y~c~A~n~~---G~~~~s~~s~~vtv~~~  446 (1101)
                      +|.|++.|.++|+|.+..   +.+.+|.+|.++.+...
T Consensus       177 ~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~  214 (419)
T 2gys_A          177 HLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ  214 (419)
T ss_dssp             TCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             hcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeecc
Confidence            999999999999999965   44788888888887654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.47  E-value=3.3e-13  Score=140.31  Aligned_cols=168  Identities=16%  Similarity=0.139  Sum_probs=117.4

Q ss_pred             CceeEEccCCeEEEEEEEeccC---CCeEEEEECC--EEe------------ecCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDG--FEI------------FSSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g--~~~------------~~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      |..+.+..|++++|.|.+.+.|   .+.+.|++++  ..+            ....++.....++...|.|.++...|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            7788899999999999999887   4789999852  221            1124565555566679999999999999


Q ss_pred             EEEEEEEeCCCceE-EEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC--eeEEEECCeecCCCCc
Q psy8139         522 EIKCTATNRAGHSI-TKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLTSGGR  594 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~-~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~--~v~W~~~g~~l~~~~~  594 (1101)
                      .|.|.+.|..+... ....|.|.    .+|.+...+.   ...+..|..+.|.|.+.|.+++  .+.|+++|..+..+..
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~  163 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPP---SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME  163 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCC---CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee
Confidence            99999999876432 23456664    3444332111   0112358899999999985433  8999999988865421


Q ss_pred             eE-EEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         595 YE-ITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       595 ~~-~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .. ....+     ....|.|......|.|.|+|.|.|..+.
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          164 TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            11 11111     1346888888888999999999997654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.47  E-value=1.2e-13  Score=142.59  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=107.3

Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +..|++++|.|.+   |.+.+.|+++|..+...       ......|.|.++...|+|.|+|.+.+..+   ....|.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~   81 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR   81 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence            3579999999998   78899999999887532       11234799999999999999999754322   12334433


Q ss_pred             c-------------------------------CCccccCCCCCCCeEEe-eCCEEEEEEEEeecCCCeeEEEECCeecCC
Q psy8139         544 A-------------------------------PPTIRLPKQYEDGLLFE-MGEIIKLKVSMAGMPPPTARWLHNGEPLTS  591 (1101)
Q Consensus       544 ~-------------------------------~p~~~~~~~~~~~~~v~-~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~  591 (1101)
                      .                               ++.+...     ...+. .|+++.|.|.  +.|.+.+.|++++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           82 MGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT-----PYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             C------------------------------------CC-----CCEEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EeccccccccccccccccccccccccccccccccceecC-----CceeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            0                               1111111     11344 8999999998  788999999999988764


Q ss_pred             CC-ceEEEeecceEEEEEccC-CCCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy8139         592 GG-RYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGED-VASFLVTV  638 (1101)
Q Consensus       592 ~~-~~~~~~~~~~~sl~i~~l-~~~~~y~y~c~A~N~~G~~-~~s~~l~v  638 (1101)
                      .. ...+..  ..++|.|.++ ...|+|.|+|.|.|..|.. +....|.+
T Consensus       155 ~~~~~~~~~--~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          155 DEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CTTCTTEEE--ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ccCCceEec--CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            31 111211  2678999999 9999999999999999963 34444443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.46  E-value=8.4e-13  Score=141.79  Aligned_cols=172  Identities=15%  Similarity=0.163  Sum_probs=120.2

Q ss_pred             eeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Ee----------ecCCcEEEE--ecCCeeEEEEeecC
Q psy8139         454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EI----------FSSRRQRIV--TDNDISTLIIHQAA  516 (1101)
Q Consensus       454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~----------~~~~~~~~~--~~~~~~~l~I~~l~  516 (1101)
                      .+...|..+.+.+|++++|.|.+.+.|.+.+.|++..  .   .+          ....++.+.  ......+|.|.++.
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3455677889999999999999999999999999832  1   11          112344442  23456689999999


Q ss_pred             CCCCEEEEEEEEeCCCce----EEEEEEeecc--------------------CCccccCCCCCCCeEEeeCCEEEEEEEE
Q psy8139         517 LMDEGEIKCTATNRAGHS----ITKARLRLEA--------------------PPTIRLPKQYEDGLLFEMGEIIKLKVSM  572 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~----~~s~~l~V~~--------------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~  572 (1101)
                      ..|+|.|.|.+.|..+..    ...+.|.|..                    +|.+...|   ....+..|++++|.|.+
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p---~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP---RNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC---SEEEEETTCCEEECEEE
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC---CEEEEeCCCcEEEEEEc
Confidence            999999999999976532    1234666664                    23333222   34467789999999999


Q ss_pred             eecCCCeeEEEECC--eecC---------------CCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         573 AGMPPPTARWLHNG--EPLT---------------SGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       573 ~g~p~~~v~W~~~g--~~l~---------------~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .+. .+.+.|++..  ....               ...++.+.. .....+|.|.++++.|+|.|+|.|.|..|.
T Consensus       162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            887 7899999732  1110               012233222 234568999999999999999999998774

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.46  E-value=7.6e-13  Score=140.61  Aligned_cols=172  Identities=16%  Similarity=0.165  Sum_probs=123.4

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccC----CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIP----TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~  516 (1101)
                      +...|.++.+.+|++++|.|.+.+.|    .+.+.|+++.  .   .+.         ...++.+...++..+|.|.++.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            45567788999999999999999988    7889999852  1   111         1245666555666789999999


Q ss_pred             CCCCEEEEEEEEeCCCc-eEEEEEEeeccCCccccC---CCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEEC--Cee
Q psy8139         517 LMDEGEIKCTATNRAGH-SITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHN--GEP  588 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~-~~~s~~l~V~~~p~~~~~---~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--g~~  588 (1101)
                      ..|+|.|.|.|.|..+. ....+.|.|..++....+   ...+....+..|+++.|.|.+.+.|  .+.+.|+++  +..
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  163 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG  163 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence            99999999999998665 333467777765321000   0112345788899999999999887  469999985  222


Q ss_pred             cC-----------------CCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         589 LT-----------------SGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       589 l~-----------------~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      ..                 ...++.+...  ....+|.|.+++..|+|.|.|.|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          164 LEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             cEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            10                 1234444332  34578999999999999999999853

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.46  E-value=7.3e-13  Score=134.53  Aligned_cols=175  Identities=15%  Similarity=0.101  Sum_probs=109.2

Q ss_pred             EecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCC
Q psy8139         638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  717 (1101)
Q Consensus       638 v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~  717 (1101)
                      +...|++|.++.+..++.+++.|+|.+|.                                                  +
T Consensus         3 ~~t~p~~P~~l~~~~~~~~sv~l~W~~p~--------------------------------------------------~   32 (186)
T 1qr4_A            3 AGTDLDNPKDLEVSDPTETTLSLRWRRPV--------------------------------------------------A   32 (186)
T ss_dssp             -----CCCEEEEEESCCSSEEEEEEECCS--------------------------------------------------S
T ss_pred             ccCCCcCCCceEEEecCCCEEEEEEeCCC--------------------------------------------------C
Confidence            34567888888777777777777777542                                                  2


Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-  796 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-  796 (1101)
                      ++.+|.|.|+..++ .+.... .....++++|.+|.|++.|.|+|.|.|..|.|.+   ......+    ++.+|.++. 
T Consensus        33 ~i~~Y~v~~~~~~~-~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~~---~~~~~~t----~p~~P~~l~~  103 (186)
T 1qr4_A           33 KFDRYRLTYVSPSG-KKNEME-IPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKP---TTIKGST----VVGSPKGISF  103 (186)
T ss_dssp             CCSEEEEEEECTTC-CEEEEE-ECTTCSEEEEESCCSSCEEEEEEEEESSSCBCCC---EEEEEEC----CCCCCSCEEE
T ss_pred             CccEEEEEEEeCCC-CeeEEE-CCCCCCEEEECCCCCCCEEEEEEEEEcCCccCCC---EEEEEEC----CCCCCCccEE
Confidence            46677777774432 233222 2256789999999999999999999998776543   3233322    244554544 


Q ss_pred             -cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCC
Q psy8139         797 -ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSD  875 (1101)
Q Consensus       797 -~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~  875 (1101)
                       ...++++.+.|.+|.               +++.            .|.|.|+..+. ..+....+.     +......
T Consensus       104 ~~~~~~sv~l~W~~p~---------------~~i~------------~Y~v~~~~~~~-~~~~~~~~~-----~~~~~~~  150 (186)
T 1qr4_A          104 SDITENSATVSWTPPR---------------SRVD------------SYRVSYVPITG-GTPNVVTVD-----GSKTRTK  150 (186)
T ss_dssp             ESCCSSCEEEEECCCS---------------SCCS------------EEEEEEEETTC-CCCEEEEEE-----TTCCEEE
T ss_pred             EEeCCCEEEEEEECCC---------------Cccc------------EEEEEEEeCCC-CCceEEEcC-----CCcCEEE
Confidence             456677888897742               3345            89998887664 334433332     2223334


Q ss_pred             CCCccCcccce--eeccccccc--CceeecccC
Q psy8139         876 NENESDYFPEK--TIDESVYGY--DTIVYGYDS  904 (1101)
Q Consensus       876 l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~  904 (1101)
                      +.+|.+.+.|.  |+|.|..|.  +......|.
T Consensus       151 i~~L~p~t~Y~~~V~A~~~~g~s~p~~~~~~T~  183 (186)
T 1qr4_A          151 LVKLVPGVDYNVNIISVKGFEESEPISGILKTA  183 (186)
T ss_dssp             ECSCCSSCEEEEEEEEEETTEECCCEEEEEEC-
T ss_pred             EcCCCCCCEEEEEEEEEcCCCcCcCEEEEEEec
Confidence            44455999999  999999887  444444443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.45  E-value=1e-12  Score=141.22  Aligned_cols=180  Identities=12%  Similarity=0.129  Sum_probs=124.8

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Ee--------------ecCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EI--------------FSSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~--------------~~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|++..  .   .+              ....++.+...  .+..+|+|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            3446689999999999998866  6789998732  1   11              01245555433  34567999999


Q ss_pred             CCCCCEEEEEEEEeC----CCceEEEEEEeecc----------------CCccccCCCCCCCeEEeeCCEEEEEEEEeec
Q psy8139         516 ALMDEGEIKCTATNR----AGHSITKARLRLEA----------------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM  575 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~----~g~~~~s~~l~V~~----------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~  575 (1101)
                      ..+|+|.|.|.+.|.    .+.....+.|.|..                +|.+...|   ..+.+..|++++|.|.+.+.
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~v~~G~~v~L~C~~~~~  165 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP---SSLSASLGERVSITCRASQD  165 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC---SEEEECTTCCEEEEEEESSC
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC---CeEEEECCCCEEEEEEEecC
Confidence            999999999999987    22233346677764                33332222   24578899999999999999


Q ss_pred             CCCeeEEEEC--CeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEEec
Q psy8139         576 PPPTARWLHN--GEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTVTD  640 (1101)
Q Consensus       576 p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v~~  640 (1101)
                      +.+.+.|++.  +....            ...++.....+...+|+|.++...|+|.|.|.|.|..+.. .....|.|..
T Consensus       166 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          166 IGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             CTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            9899999983  22111            1245665556667789999999999999999999865432 2245566664


Q ss_pred             C
Q psy8139         641 R  641 (1101)
Q Consensus       641 ~  641 (1101)
                      .
T Consensus       246 ~  246 (256)
T 3umt_A          246 A  246 (256)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=5.7e-14  Score=146.17  Aligned_cols=168  Identities=15%  Similarity=0.187  Sum_probs=118.4

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      |..+.+..|++++|.|.+.+.|.+.+.|+++  +..+.            ...++.+...++...|.|.++...|+|.|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            6677899999999999999988889999984  32221            134566665666779999999999999999


Q ss_pred             EEEEeCCCce---EEEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCCCCce
Q psy8139         525 CTATNRAGHS---ITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRY  595 (1101)
Q Consensus       525 C~a~n~~g~~---~~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~  595 (1101)
                      |.|.|..+..   .....|.|.    .+|.+...+.   ...+..|+.+.|.|.+.|. |. +.+.|+++|..+..+...
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  162 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPP---SPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT  162 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCC---CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCC---chHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence            9999732221   123456663    3444433221   1123468899999999987 54 799999999887643211


Q ss_pred             E-EEeec----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         596 E-ITHTD----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       596 ~-~~~~~----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      . ....+    ..+.|.|.++...|.|.|+|.|.|..+.
T Consensus       163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            0 00001    1345889999999999999999998775

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.45  E-value=1.8e-12  Score=138.36  Aligned_cols=170  Identities=14%  Similarity=0.194  Sum_probs=120.3

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccC-----CCeEEEEECC--E--E-ee---------cCCcEEEEecCCeeEEEEeec
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIP-----TPKVSWYKDG--F--E-IF---------SSRRQRIVTDNDISTLIIHQA  515 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~g--~--~-~~---------~~~~~~~~~~~~~~~l~I~~l  515 (1101)
                      +...|.++.+.+|++++|.|.+.+.|     .+.+.|+++.  .  . +.         ...++.+...++..+|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            45567788999999999999999888     6899999842  1  1 11         134566655566678999999


Q ss_pred             CCCCCEEEEEEEEeCCCceE-EEEEEeeccCCc------------cccCCCCCCCeEEeeCCEEEEEEEEeecC--CCee
Q psy8139         516 ALMDEGEIKCTATNRAGHSI-TKARLRLEAPPT------------IRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTA  580 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~~~p~------------~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v  580 (1101)
                      ...|+|.|.|.+.|..+... ..+.|.|..++.            +..  .......+..|++++|.|.+.+.+  .+.+
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  161 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQL--QQSGPELKKPGETVKISCKATNYAFTDYSM  161 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEE--EECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEE--eCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence            99999999999998765422 235677776532            111  011223588899999999999875  5799


Q ss_pred             EEEECC--eec------C-----------CCCceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         581 RWLHNG--EPL------T-----------SGGRYEITH--TDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       581 ~W~~~g--~~l------~-----------~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .|++++  ...      .           ...++.+..  .....+|.|.++...|+|.|.|.|.|.
T Consensus       162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            999853  111      0           123444443  334678999999999999999999995

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.45  E-value=3.7e-13  Score=140.47  Aligned_cols=170  Identities=13%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             CceeEEccCCeEEEEEEE-eccC-CCeEEEEECC--EEe---e---------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         459 LHDTTALEDEKVEFTVQV-EGIP-TPKVSWYKDG--FEI---F---------SSRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~-~g~p-~~~v~W~~~g--~~~---~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      |..+.+..|++++|.|.+ .+.+ .+.+.|++++  ..+   .         ...++.+...++..+|.|.++...|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            566789999999999995 4443 5789999843  111   0         1245666555667799999999999999


Q ss_pred             EEEEEEeCCCc--eEEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEECCeecCCCCce
Q psy8139         523 IKCTATNRAGH--SITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHNGEPLTSGGRY  595 (1101)
Q Consensus       523 Y~C~a~n~~g~--~~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~g~~l~~~~~~  595 (1101)
                      |.|.|.|..+.  ......|.|..   +|.+...+..   .....|+.+.|.|.+.| .|.+ .+.|+++|..+..+...
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~---~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  163 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS---DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  163 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC---HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC---hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence            99999998761  12234566653   3443321110   01124889999999998 4554 89999999987654111


Q ss_pred             --EEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         596 --EITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       596 --~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                        ......     ..+.|.|......|.|.|+|.|.|......
T Consensus       164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence              111111     124788999999999999999999876543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.45  E-value=5.9e-13  Score=139.22  Aligned_cols=173  Identities=12%  Similarity=0.125  Sum_probs=114.9

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEEee-----------------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFEIF-----------------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~~~-----------------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|.+.+.|  .+.+.|+++  +..+.                 ...++.+...  .+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            35566789999999999999865  678999986  32211                 1245555432  3456899999


Q ss_pred             cCCCCCEEEEEEEEeCCCce----EEEEEEeeccC----CccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEE
Q psy8139         515 AALMDEGEIKCTATNRAGHS----ITKARLRLEAP----PTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLH  584 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~----~~s~~l~V~~~----p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~  584 (1101)
                      +...|+|.|.|.+.|..+..    ...+.|.|...    |.+...+..   ..+..|+.+.|.|.+.| .|.| .+.|++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  162 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPG---SAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCC---SSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCc---cccccCCeEEEEEEcccccCCCeEEEEEe
Confidence            99999999999999987422    12456777653    333211111   12356999999999998 8888 999999


Q ss_pred             CCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         585 NGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       585 ~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      +|..+...........+   ..+.|.|.... .+.|.|+|.|.|..|......
T Consensus       163 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          163 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             GTBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEE
T ss_pred             CCcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEE
Confidence            98764311000000111   13467884444 456999999999888754443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.45  E-value=6.8e-13  Score=138.12  Aligned_cols=168  Identities=20%  Similarity=0.223  Sum_probs=116.9

Q ss_pred             ecCceeEEccCCeEEEEEEEecc-------CCCeEEEEECCEE------ee-----------cCCcEEEEec--CCeeEE
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGI-------PTPKVSWYKDGFE------IF-----------SSRRQRIVTD--NDISTL  510 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~-------p~~~v~W~~~g~~------~~-----------~~~~~~~~~~--~~~~~l  510 (1101)
                      ..|..+.+.+|++++|.|.+.+.       +.+.+.|++++..      +.           ...++.+..+  .+..+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            45677889999999999998864       5678999997642      11           1134444321  234479


Q ss_pred             EEeecCCCCCEEEEEEEEeCCCceE----EEEEEeeccCC---ccccCCCCCCCeEEeeCCEEEEEEEEeec----CCCe
Q psy8139         511 IIHQAALMDEGEIKCTATNRAGHSI----TKARLRLEAPP---TIRLPKQYEDGLLFEMGEIIKLKVSMAGM----PPPT  579 (1101)
Q Consensus       511 ~I~~l~~~d~g~Y~C~a~n~~g~~~----~s~~l~V~~~p---~~~~~~~~~~~~~v~~g~~~~l~c~~~g~----p~~~  579 (1101)
                      .|.++...|+|.|.|.+.+..+...    ....|.|..++   .+..+.      .+..|+.++|.|.+.+.    |.|.
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~------~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE------PLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C------CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc------cccCCCeEEEEEEeccCCCCCCCce
Confidence            9999999999999999999764322    35677777643   332211      24579999999999874    7899


Q ss_pred             eEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       580 v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +.|++++...... .     ....+.|.|..+...+.|.|+|.|.|..|.......+
T Consensus       159 v~W~~~~~~~~~~-~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          159 FSWTGNALSPLDP-E-----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             EEEESSTTSSSCS-S-----CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             EEEeCCCCccCCC-C-----ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence            9999988654321 1     1235679999999899999999999987654444433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.45  E-value=5.1e-13  Score=134.42  Aligned_cols=158  Identities=11%  Similarity=0.114  Sum_probs=113.1

Q ss_pred             CceeEEccCCeEEEEEEEe--ccCCCeEEEEE--CCEEe----------ecCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVE--GIPTPKVSWYK--DGFEI----------FSSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~--g~p~~~v~W~~--~g~~~----------~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +..+....|++++|.|...  +.+.+.|.|++  ++..+          ....++.+..++   +|.|.++...|+|.|+
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYK   82 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEE
Confidence            3456678999999999542  34567899999  88766          234566655333   8999999999999999


Q ss_pred             EEEEeCCCceEE--EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecc
Q psy8139         525 CTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR  602 (1101)
Q Consensus       525 C~a~n~~g~~~~--s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~  602 (1101)
                      |.+.|..|....  ...|.|..+...   |.     ....+..+.|.|.+.+.|.+.+.|+++|..+ .+         .
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~~~~---P~-----i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~---------~  144 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQERVSK---PK-----ISWTCINTTLTCEVMNGTDPELNLYQDGKHL-KL---------S  144 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECCCCC---CE-----EEEETTTTEEEEECSSCSSCEEEEEESSCEE-EE---------E
T ss_pred             EEEEeCCCceeEEEEEEEEEcCcCCC---CE-----EEEccCcEEEEeEccCCCCCEEEEEECCEEC-CC---------C
Confidence            999999887643  456777653211   10     1223446889999999999999999999876 11         1


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      ...+.+. ....|.|.|+|.|.|..|.......+..
T Consensus       145 ~~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~~~~c  179 (182)
T 1hnf_A          145 QRVITHK-WTTSLSAKFKCTAGNKVSKESSVEPVSC  179 (182)
T ss_dssp             SSCEEEE-CCSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CcEEEEe-cccCCCcEEEEEEEeCCCCcEEcceecC
Confidence            1223332 2467999999999999998777665543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.44  E-value=5.6e-13  Score=142.32  Aligned_cols=185  Identities=13%  Similarity=0.082  Sum_probs=124.7

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.+...|. ..+..|++++|.|.+.+ +.+.+.|+++|..+...... ..........|.|.++...|+|.|+|.+.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            35677776675 67889999999999975 56789999987643211000 00012234589999999999999999998


Q ss_pred             eCCC-----ceEEEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE-e
Q psy8139         529 NRAG-----HSITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-H  599 (1101)
Q Consensus       529 n~~g-----~~~~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~  599 (1101)
                      |..+     ..+....|.|..   +|.+...+.    ..+.+|++++|.|.+.+. .+.+.|+++|..+......... .
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~----~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~  157 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG----PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVN  157 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC----TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSS
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC----CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccC
Confidence            6432     123346677764   344443332    146789999999998876 4799999999776533221111 1


Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCC-----CceeEEEEEEecCCC
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLG-----EDVASFLVTVTDRPL  643 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G-----~~~~s~~l~v~~~P~  643 (1101)
                      ...+..|.|.+++  |.|.|+|.|.|..+     ..+....|.|.+.|.
T Consensus       158 ~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          158 GTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             SCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             CceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            1236789999998  99999999997643     123456677776653

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.44  E-value=1.7e-12  Score=134.76  Aligned_cols=135  Identities=16%  Similarity=0.180  Sum_probs=107.6

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc-----------------CCCCCCeeeecCceeEEccCC
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR-----------------SPAAAPSFIRALHDTTALEDE  468 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~-----------------~~~~~P~~~~~p~~~~v~~g~  468 (1101)
                      ..|.|.++++.|+|.|+|.|.|..|...     ..+.+.+..                 ....++.+...|....+..|+
T Consensus        59 ~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~  133 (212)
T 2r15_A           59 IWLQINEPTPNDKGKYVMELFDGKTGHQ-----KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK  133 (212)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEE-----EEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTC
T ss_pred             EEEEECCCCcccCEEEEEEEecCCcceE-----EEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCC
Confidence            4699999999999999999999766432     123332210                 011333444556778899999


Q ss_pred             eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccC
Q psy8139         469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP  545 (1101)
Q Consensus       469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~  545 (1101)
                      .+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|..|.......|.|..|
T Consensus       134 ~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          134 ALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             CEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence            999999999999999999999999988777777665 66679999999999999999999999999888888888643

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.44  E-value=2.4e-13  Score=139.74  Aligned_cols=123  Identities=10%  Similarity=0.003  Sum_probs=94.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ...|.|.++++.|+|.|+|.|.|..|...     ..+.+.+.    .||.+...+.+..+.+|++++|.|.+.|.|.|.|
T Consensus        68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~----~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v  138 (203)
T 4fa8_A           68 TFFLVVTAANISHDGNYLCRMKLGETEVT-----KQEHLSVV----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHV  138 (203)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEE----EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEcCCCcEE-----EEEEEEec----CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEE
Confidence            35799999999999999999999877543     22444443    4677777788888999999999999999999999


Q ss_pred             EEEECCEEee----cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         485 SWYKDGFEIF----SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       485 ~W~~~g~~~~----~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      +|++++..+.    ...++.+..++....+.|.++...|+|.|+|.|.|..|....
T Consensus       139 ~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          139 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             EECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            9998765432    234455555555556777899999999999999999998764

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.44  E-value=9.8e-13  Score=142.54  Aligned_cols=200  Identities=18%  Similarity=0.165  Sum_probs=113.6

Q ss_pred             cCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE
Q psy8139         414 EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF  491 (1101)
Q Consensus       414 ~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~  491 (1101)
                      ...+.+.|.|.|.|..|....+               ....+...|..+.+.+|++++|.|.+.+ +.+.+.|++.  +.
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~---------------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~   67 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGG---------------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNN   67 (270)
T ss_dssp             ---------------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTC
T ss_pred             hhhhHHHHHHHHhccCCccccc---------------cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCC
Confidence            4567888999999987754322               2334556677889999999999999876 6789999982  21


Q ss_pred             E---e---------ecC---C-cEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEeCCC----ceEEEEEEeecc------
Q psy8139         492 E---I---------FSS---R-RQRIVT-DNDISTLIIHQAALMDEGEIKCTATNRAG----HSITKARLRLEA------  544 (1101)
Q Consensus       492 ~---~---------~~~---~-~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g----~~~~s~~l~V~~------  544 (1101)
                      .   +         ...   . ++.+.. ..+..+|.|.+++..|+|.|.|.+.+..+    .......|.|..      
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~  147 (270)
T 3qib_D           68 EFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVF  147 (270)
T ss_dssp             CEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCB
T ss_pred             CcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccccc
Confidence            1   0         000   0 444443 23456899999999999999999997432    222234666665      


Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEECCeecCCCCceEE------E--eecc---eEEEEEccC
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHNGEPLTSGGRYEI------T--HTDR---YLNLRISDA  611 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~g~~l~~~~~~~~------~--~~~~---~~sl~i~~l  611 (1101)
                      +|.+...+.  ....+..|..++|.|.+.+ .|.+ .+.|+++|..+..+.....      .  ..+.   ...+.|...
T Consensus       148 ~P~v~~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~  225 (270)
T 3qib_D          148 PPEVAVFEP--SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSAT  225 (270)
T ss_dssp             CCEEEEEEC--CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHH
T ss_pred             CCceEEECC--CccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHH
Confidence            232211000  0111234899999999998 6656 8999999988865321110      0  0000   245677776


Q ss_pred             CCCC-CeEEEEEEEeCCCCce
Q psy8139         612 RRAD-RGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       612 ~~~~-~y~y~c~A~N~~G~~~  631 (1101)
                      ...| .|.|+|.|.|......
T Consensus       226 ~~~d~~g~YtC~v~~~~l~~~  246 (270)
T 3qib_D          226 FWQNPRNHFRCQVQFYGLSEN  246 (270)
T ss_dssp             HHHSTTCEEEEEEEECCBCTT
T ss_pred             HhccCCCeEEEEEEecCCCCc
Confidence            6666 8999999999866543

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.44  E-value=3.4e-11  Score=138.28  Aligned_cols=260  Identities=11%  Similarity=0.068  Sum_probs=158.9

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCC--CCeEEEEEEEeCCCCceeE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRA--DRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~--~~y~y~c~A~N~~G~~~~s  633 (1101)
                      ....+..|.++++.|.....   ......++     ..............+++.|+...  ..-+|.|..    ......
T Consensus       206 ~~~vv~~GS~vt~~Ci~~~~---~~~~~l~~-----~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~----~~~~~g  273 (483)
T 3e0g_A          206 QDKVILVGSDITFCCVSQEK---VLSALIGH-----TNCPLIHLDGENVAIKIRNISVSASSGTNVVFTT----EDNIFG  273 (483)
T ss_dssp             CSEEEETTCCEEEEECCSSC---EEEEESSS-----CCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEE----SSCEEE
T ss_pred             cCCEEeCCCCEEEEEEeCcc---ccceecCc-----ccceeEEecCCEEEEEEeCCCCccCccceEEEec----CCcccc
Confidence            34478899999999987631   22222221     11111223444677888888763  345688874    123456


Q ss_pred             EEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCC--CcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCC
Q psy8139         634 FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDG--GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP  711 (1101)
Q Consensus       634 ~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~--g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP  711 (1101)
                      ..+.+..+|++|.++.......++++++|+++.+.+  |...+                                     
T Consensus       274 ~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t-------------------------------------  316 (483)
T 3e0g_A          274 TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRAT-------------------------------------  316 (483)
T ss_dssp             EEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCC-------------------------------------
T ss_pred             eEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCe-------------------------------------
Confidence            678888999999999888777788999999765442  22244                                     


Q ss_pred             CCCCCCCcceEEEEEEeCCCCCceeecc---cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCC
Q psy8139         712 EYDGGSPVLGYLVEHRRTGSPYWVRASP---HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP  788 (1101)
Q Consensus       712 ~~~~~~~i~~Y~V~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P  788 (1101)
                               .|.|.|+..+.  ......   ..+....+.+.+|.+.+.|.|+|.|.|..|.+. |.   .........+
T Consensus       317 ---------~YtL~y~~~g~--~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~---~~~~~~~~Vk  381 (483)
T 3e0g_A          317 ---------SYTLVESFSGK--YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST---ILVNITEKVY  381 (483)
T ss_dssp             ---------EEEEEETTTCC--EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE---EEECGGGGBC
T ss_pred             ---------eEEEEEEECCC--CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc---eEEEeccccC
Confidence                     44444443221  111111   013456789999999999999999999999865 22   2222234567


Q ss_pred             CCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccc
Q psy8139         789 AAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNE  866 (1101)
Q Consensus       789 ~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~  866 (1101)
                      +.||.++.  ...++...+.|.+|..            .++..+            .|.|.|+..+....|....+... 
T Consensus       382 P~PP~nl~v~~~~stsl~LsW~~P~~------------~~~~~L------------~YeVrYr~~~~~~~~~~vsv~~~-  436 (483)
T 3e0g_A          382 PHTPTSFKVKDINSTAVKLSWHLPGN------------FAKINF------------LCEIEIKKSNSVQEQRNVTIQGV-  436 (483)
T ss_dssp             CCCCEEEEECCSSSSSCCEEEECCSC------------CTTSBC------------CCEEEEECSSSCCCEEECCCBCC-
T ss_pred             CCCCeeeEEEEecCCeEEEEECCCCC------------CCCceE------------EEEEEEEECCCCCceEEEEEecc-
Confidence            78888776  3355677788887532            122334            89999998875545554333110 


Q ss_pred             cccCCCCCCCCCccCcccce--eeccccccc------CceeecccCCC
Q psy8139         867 HTGTGAPSDNENESDYFPEK--TIDESVYGY------DTIVYGYDSDD  906 (1101)
Q Consensus       867 ~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~------~~~v~~~t~e~  906 (1101)
                       ........+.+|.+++.|.  |+|. ..|.      |..+...|.|+
T Consensus       437 -~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E~  482 (483)
T 3e0g_A          437 -ENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTEA  482 (483)
T ss_dssp             -SSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCCC
T ss_pred             -CCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCCC
Confidence             0011123466667999999  8888 4442      55555555543

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-12  Score=134.94  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=105.2

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         701 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       701 ~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      ++++.|+|.+|   +++++.+|.|+|+..+. ..|..... ....++++|.+|.|++.|.|+|.|.|..|.|.++. ..+
T Consensus        15 ~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~~~~~-~~~   89 (201)
T 2ha1_A           15 PNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATI-PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR-FDF   89 (201)
T ss_dssp             SSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEEEE-CTTCCEEEECSCCTTEEEEEEEEEECTTSCEEEEE-EEE
T ss_pred             CCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEEec-CCCccEEEecCCCCCCEEEEEEEEEecccccCcee-EEE
Confidence            89999999998   35679999999998654 45665443 25678999999999999999999999999976531 111


Q ss_pred             EEe---------cCCCCCCCCCc----ccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeE
Q psy8139         780 LTV---------TYQRSPAAAPS----FIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIET  844 (1101)
Q Consensus       780 ~t~---------~~~~~P~~~p~----~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y  844 (1101)
                      .+.         .....|..+|.    .+.  ...++++.+.|.+|.               +++.            +|
T Consensus        90 ~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p~---------------~~i~------------~Y  142 (201)
T 2ha1_A           90 TTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSAS---------------DTVS------------GF  142 (201)
T ss_dssp             EECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCSC---------------TTEE------------EE
T ss_pred             ecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCCC---------------CCcc------------EE
Confidence            110         00122334332    222  445677888897751               2444            89


Q ss_pred             EeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccccccc
Q psy8139         845 ISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       845 ~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                      .|.|+....+.......+..     ......+.+|.+.+.|.  |+|.|..|.
T Consensus       143 ~v~~~~~~~~~~~~~~~v~~-----~~~~~~i~~L~p~t~Y~~~V~A~~~~G~  190 (201)
T 2ha1_A          143 RVEYELSEEGDEPQYLDLPS-----TATSVNIPDLLPGRKYIVNVYQISEDGE  190 (201)
T ss_dssp             EEEEEETTTCCCCEEEEEET-----TCCEEEECSCCTTCEEEEEEEEEETTSC
T ss_pred             EEEEEECCCCCceeEEEcCC-----ceeEEEeCCCCCCCEEEEEEEEEcCCCC
Confidence            99888654333223333322     22223444455999999  999999998

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.43  E-value=4.3e-12  Score=128.82  Aligned_cols=122  Identities=16%  Similarity=0.062  Sum_probs=95.0

Q ss_pred             ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139         600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE  679 (1101)
Q Consensus       600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~  679 (1101)
                      .....++.|.+|.+++.|.|+|.|.|..|.+. ...+.+...|.+|.++.+...+.+++.|+|.+|.             
T Consensus        54 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~-~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~-------------  119 (186)
T 1qr4_A           54 PVDSTSFILRGLDAGTEYTISLVAEKGRHKSK-PTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-------------  119 (186)
T ss_dssp             CTTCSEEEEESCCSSCEEEEEEEEESSSCBCC-CEEEEEECCCCCCSCEEEESCCSSCEEEEECCCS-------------
T ss_pred             CCCCCEEEECCCCCCCEEEEEEEEEcCCccCC-CEEEEEECCCCCCCccEEEEeCCCEEEEEEECCC-------------
Confidence            34467899999999999999999999755543 4566667788999988887777777777777542             


Q ss_pred             EEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       680 ~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                                                           +++.+|.|.|+..++..+..... ....++++|.+|.|++.|.
T Consensus       120 -------------------------------------~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~  161 (186)
T 1qr4_A          120 -------------------------------------SRVDSYRVSYVPITGGTPNVVTV-DGSKTRTKLVKLVPGVDYN  161 (186)
T ss_dssp             -------------------------------------SCCSEEEEEEEETTCCCCEEEEE-ETTCCEEEECSCCSSCEEE
T ss_pred             -------------------------------------CcccEEEEEEEeCCCCCceEEEc-CCCcCEEEEcCCCCCCEEE
Confidence                                                 24778888888776544443332 2577899999999999999


Q ss_pred             EEEEEEcCCccCCC
Q psy8139         760 FRITAENVVGFSEP  773 (1101)
Q Consensus       760 ~~V~A~n~~G~g~~  773 (1101)
                      |+|.|.|..|.|++
T Consensus       162 ~~V~A~~~~g~s~p  175 (186)
T 1qr4_A          162 VNIISVKGFEESEP  175 (186)
T ss_dssp             EEEEEEETTEECCC
T ss_pred             EEEEEEcCCCcCcC
Confidence            99999999998665

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=5.4e-13  Score=122.24  Aligned_cols=104  Identities=29%  Similarity=0.398  Sum_probs=82.8

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      ..+|++|..+.....++.+++.|+|++|..+++++|++|.|+|+..+...|..+..  ...+.++|.+|.|++.|.|+|+
T Consensus         6 ~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~   83 (110)
T 2crz_A            6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLR   83 (110)
T ss_dssp             CCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECCE
T ss_pred             CCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEe--CCcEEEEECCcCCCCEEEEEEE
Confidence            34555555443334577899999999998888899999999999888778987764  6789999999999999999999


Q ss_pred             EEcCCccCCCCCCCCcEEecCCCCCCCCC
Q psy8139         764 AENVVGFSEPGPLSEPLTVTYQRSPAAAP  792 (1101)
Q Consensus       764 A~n~~G~g~~S~~s~~~t~~~~~~P~~~p  792 (1101)
                      |.|..|.|++|..+.+.|.   ..|+.+|
T Consensus        84 A~n~~G~g~~S~~~~~~T~---~~~P~~P  109 (110)
T 2crz_A           84 AANKMGFGPFSEKCDITTA---PGSGPSS  109 (110)
T ss_dssp             EECSSCBCCCCCCEEEECC---CSCCCCC
T ss_pred             EEcCCccCCCCCccccccC---CCCCCCC
Confidence            9999999998876655544   3444444

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.43  E-value=1.1e-12  Score=140.05  Aligned_cols=175  Identities=16%  Similarity=0.168  Sum_probs=118.7

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEE----------------CCEEeecC---CcEEEEe-cCCeeEEEEee
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK----------------DGFEIFSS---RRQRIVT-DNDISTLIIHQ  514 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----------------~g~~~~~~---~~~~~~~-~~~~~~l~I~~  514 (1101)
                      +...|..+.+.+|++++|.|.+.+.|.+.+.|++                ++......   .++.+.. ..+..+|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4556778889999999999999999999999998                22222211   4555543 24566899999


Q ss_pred             cCCCCCEEEEEEEEeCCCc----eEEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC--eeEE
Q psy8139         515 AALMDEGEIKCTATNRAGH----SITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARW  582 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~----~~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~--~v~W  582 (1101)
                      +...|+|.|.|.+.+..+.    ......|.|..      +|.+....  +....+..|..+.|.|.+.|.+++  .+.|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeec--CCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            9999999999999986542    11234566654      33221110  011123358999999999987654  8999


Q ss_pred             EECCeecCCCCceEEEe-------ecc----eEEEEEccCCCCC-CeEEEEEEEeCCCCce
Q psy8139         583 LHNGEPLTSGGRYEITH-------TDR----YLNLRISDARRAD-RGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       583 ~~~g~~l~~~~~~~~~~-------~~~----~~sl~i~~l~~~~-~y~y~c~A~N~~G~~~  631 (1101)
                      +++|..+..+.......       .++    ...|.|......| .|.|+|.|.|......
T Consensus       162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            99998886532211100       011    2347788777777 9999999999876554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.43  E-value=6.2e-13  Score=142.50  Aligned_cols=176  Identities=11%  Similarity=0.116  Sum_probs=121.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccC-----CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIP-----TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLII  512 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I  512 (1101)
                      .+.+...|..+.+..|++++|.|.+.+.|     .+.+.|++++  .   .+.         ...++.+...++..+|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455667888999999999999999887     6899999853  1   111         124566655566779999


Q ss_pred             eecCCCCCEEEEEEEEeCCCceE-EEEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEECC
Q psy8139         513 HQAALMDEGEIKCTATNRAGHSI-TKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLHNG  586 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~~g  586 (1101)
                      .++...|+|.|.|.+.|..+... ....|.|..   +|.+...+..   ..+..|+.+.|.|.+.|. |.+ .+.|+++|
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~---~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  190 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS---SEQLTSGGASVVCFLNNFYPKDINVKWKIDG  190 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC---HHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC---hhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence            99999999999999998765432 234566654   3433321110   012358899999999984 443 79999999


Q ss_pred             eecCCCCce--EEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         587 EPLTSGGRY--EITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       587 ~~l~~~~~~--~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ..+..+...  ......     ....|.|..+...|.|.|+|.|.|.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          191 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             eecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            887644111  011011     13468899998889999999999976543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.43  E-value=9.7e-13  Score=134.89  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=106.6

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC-CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP-AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~-~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|...     ..+.+.+...+ ...|.+...+....+..|+.+.|.|.+.|.|.+.+
T Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-----~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i  136 (197)
T 2j8h_A           62 HQLIIASVTDDDATVYQVRATNQGGSVS-----GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI  136 (197)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEE-----EEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEE
T ss_pred             EEEEECcCCHHhCEEEEEEEEECCCcee-----EEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcE
Confidence            3899999999999999999999877542     22333332111 12233334456678899999999999999999999


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEee-cCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQ-AALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~-l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      .|++++..+....++.+...+....|.|.+ +...|.|.|+|.|.|..|....++.|.|.
T Consensus       137 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            999999998877777777777778999999 99999999999999999998888887774

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=135.75  Aligned_cols=128  Identities=20%  Similarity=0.299  Sum_probs=98.8

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC-----------------CCCCCeeeecCceeEEccCC
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS-----------------PAAAPSFIRALHDTTALEDE  468 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~-----------------~~~~P~~~~~p~~~~v~~g~  468 (1101)
                      .+|.|.++++.|+|.|+|.|.|  |...     ....+.+...                 ...+|.|...+ +..+.+|.
T Consensus        61 ~~L~I~~v~~~D~G~Y~C~a~N--g~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~  132 (207)
T 3rbs_A           61 IEMFMEKLQDEDEGTYTFQLQD--GKAT-----NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGEC  132 (207)
T ss_dssp             EEEEESCCCGGGCEEEEEEEEE--TTEE-----EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTT
T ss_pred             EEEEECCCChhhCEEEEEEEEC--CCeE-----EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCC
Confidence            3699999999999999999999  3322     1122211000                 01367776665 57889999


Q ss_pred             eEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         469 KVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       469 ~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      ++.|.|.+.|. |.|.++|+++|..+....++  ....+..+|.|.++...|+|.|+|.|.|..|....++.|.+.
T Consensus       133 ~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          133 NVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             EEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             cEEEEEEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            99999999998 99999999999998765443  223444579999999999999999999999999988887754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.42  E-value=7.6e-13  Score=138.54  Aligned_cols=176  Identities=17%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCe---EEEEECCEEeec----------------CCcEEEE-------ecCCeeEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPK---VSWYKDGFEIFS----------------SRRQRIV-------TDNDISTLII  512 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~---v~W~~~g~~~~~----------------~~~~~~~-------~~~~~~~l~I  512 (1101)
                      |.++.+..|++++|.|.+.+.|.+.   |+|++++..+..                ..+....       ...+..+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            4457788999999999999887764   899997643210                0111111       1123357999


Q ss_pred             eecCCCCCEEEEEEEEeCCCceEEE-EEEeeccCCccccCCCCCCCeEEeeCCEEEEEEE-EeecCCCeeEEEECCeecC
Q psy8139         513 HQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS-MAGMPPPTARWLHNGEPLT  590 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~-~~g~p~~~v~W~~~g~~l~  590 (1101)
                      .++...|+|.|+|.+.|..|..... ..+.+..+|.....+..   .....+....+.|. ..+.|.+.+.|++++..+.
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~  164 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQE---VTIGPQSVAVARCVSTGGRPPARITWISSLGGEA  164 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECC---BCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccc---eeecceeeeeeeeeecCCCCCCEEEEEECCcccc
Confidence            9999999999999999987765543 44555555544332221   12334556666655 4567889999998876543


Q ss_pred             CCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         591 SGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       591 ~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      ..........+.   .+.|.|.++...|.|.|+|.|.|..|.......++
T Consensus       165 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          165 KDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             CCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            221111111111   34699999999999999999999998776554444

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.42  E-value=2.7e-12  Score=141.24  Aligned_cols=134  Identities=14%  Similarity=0.111  Sum_probs=87.5

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEe--CCCCceeEEEEEEec----CCCCCCccEEEEecCCeEEEEeecCCCCCCccccee
Q psy8139         603 YLNLRISDARRADRGEYQAHGVN--SLGEDVASFLVTVTD----RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNY  676 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N--~~G~~~~s~~l~v~~----~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y  676 (1101)
                      ...+.|.+|.+++.|.+++.|.|  ..|.+..+..+.+..    ++.+|.++.+... .+++.|+|++|..++     +|
T Consensus       158 ~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~-~~s~~l~W~~p~~~~-----~~  231 (306)
T 3s98_A          158 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ-NQNYVLKWDYTYANM-----TF  231 (306)
T ss_dssp             CTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEEE-TTEEEEEEECSSSSC-----EE
T ss_pred             cceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEEe-cCEEEEEeCCCCCcE-----EE
Confidence            45688999999999999999999  556665554444442    2356777777544 467888888764211     23


Q ss_pred             EEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeec-ccccCccEEEEcC-CCC
Q psy8139         677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS-PHMVEDTELMVSG-LEP  754 (1101)
Q Consensus       677 ~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~-~~~~~~~~~~i~~-L~p  754 (1101)
                      .+++                                      +.+|.+.++..++..|..+. -.....+.+.+.+ |.+
T Consensus       232 ~v~~--------------------------------------~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~  273 (306)
T 3s98_A          232 QVQW--------------------------------------LHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQ  273 (306)
T ss_dssp             EEEE--------------------------------------EEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSC
T ss_pred             EEEE--------------------------------------ehhhhhccccccccCceECCCceeCCCccccCchhhcc
Confidence            3332                                      23454555555667898541 1225667888887 456


Q ss_pred             CceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         755 GWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       755 ~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      ...|.|||+|.|..|.|.+|....+.
T Consensus       274 ~~~Y~~RV~A~n~~~~s~~s~~~~~~  299 (306)
T 3s98_A          274 KGIYLLRVQASDGNNTSFWSEEIKFD  299 (306)
T ss_dssp             SSEEEEEEEEECSSCBCCCCCCEEEE
T ss_pred             cCCEEEEEEEccCCCccccccccccC
Confidence            66999999999999998887655444

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=139.01  Aligned_cols=169  Identities=17%  Similarity=0.270  Sum_probs=117.8

Q ss_pred             CceeEEccCCeEEEEEEEecc--CCCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      |..+.+.+|++++|.|.+.+.  |.+.+.|++..  .   .+.         ...++.+...+...+|.|.++...|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            445789999999999999887  78899999842  1   111         1246666656667789999999999999


Q ss_pred             EEEEEEeCCCceE---EEEEEeeccCCcccc-----------------CCCCCCCeEEeeCCEEEEEEEEeecC--CCee
Q psy8139         523 IKCTATNRAGHSI---TKARLRLEAPPTIRL-----------------PKQYEDGLLFEMGEIIKLKVSMAGMP--PPTA  580 (1101)
Q Consensus       523 Y~C~a~n~~g~~~---~s~~l~V~~~p~~~~-----------------~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v  580 (1101)
                      |.|.+.|..+...   ..+.|.|..++....                 .........+.+|++++|.|.+.+.+  .+.+
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  168 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAM  168 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence            9999999765322   345677776542110                 00111234577899999999999877  7899


Q ss_pred             EEEEC--Ceec------C-----------CCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         581 RWLHN--GEPL------T-----------SGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       581 ~W~~~--g~~l------~-----------~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      .|+++  +..+      .           ...++.+...  ....+|.|.+++..|+|.|.|.|.|..
T Consensus       169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            99985  3221      0           1124554433  346679999999999999999999964

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.42  E-value=3.4e-13  Score=150.53  Aligned_cols=208  Identities=12%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             CCCeeeecCceeEEccC--CeEEEEEEEecc-C-CCeEEEEECCEEeecCCcE-EEEecCC----eeEEEEeecCCCCCE
Q psy8139         451 AAPSFIRALHDTTALED--EKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQ-RIVTDND----ISTLIIHQAALMDEG  521 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g--~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~-~~~~~~~----~~~l~I~~l~~~d~g  521 (1101)
                      .+|.+...+.......|  +++.|.|.+.|. | .+.|+|+++|..+...... .....++    .+.|.|......|+|
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence            34554443333223334  699999999886 3 4689999999988644221 1111122    235777777777999


Q ss_pred             EEEEEEEeCCCceEEEEEEee---ccCCcc-ccCCCCCCCeEEeeCCEEEEEEEEeec-CCC---eeEEEECC-eecCCC
Q psy8139         522 EIKCTATNRAGHSITKARLRL---EAPPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP---TARWLHNG-EPLTSG  592 (1101)
Q Consensus       522 ~Y~C~a~n~~g~~~~s~~l~V---~~~p~~-~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~---~v~W~~~g-~~l~~~  592 (1101)
                      .|+|.|.|..+.......+.+   ...|.+ ..+|.   ...+..|+.+.|.|.+.|. |.+   .+.|++++ ..+...
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~---~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~  162 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPS---PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS  162 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCC---HHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred             cEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCC---HHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence            999999998765543332211   112222 22221   1235579999999999986 455   99999964 444322


Q ss_pred             CceEEEe-ec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec---CCCCCCccEEEE-----ecCCeEEE
Q psy8139         593 GRYEITH-TD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD---RPLPPGKAKVVM-----TLGKSVTL  660 (1101)
Q Consensus       593 ~~~~~~~-~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~---~P~~P~~~~~~~-----~~~~sv~l  660 (1101)
                      ....... .+   ..+.|.|.++...|.|.|+|.|.|..+....  .+.+..   ...+| .+.+..     ..+..++|
T Consensus       163 ~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P-~v~~~~~~~~~~~g~~~~l  239 (323)
T 2wqr_A          163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAP-EVYAFATPEWPGSRDKRTL  239 (323)
T ss_dssp             CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCC-EEEEEECCCCTTCTTEEEE
T ss_pred             cCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCC-EEEEeCCChHHhcCCcEEE
Confidence            1111100 00   2457999999999999999999998754333  333322   12222 222211     12678899


Q ss_pred             Eeec
Q psy8139         661 SWSE  664 (1101)
Q Consensus       661 sW~~  664 (1101)
                      .|..
T Consensus       240 ~C~~  243 (323)
T 2wqr_A          240 ACLI  243 (323)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9985

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.42  E-value=5.4e-13  Score=133.13  Aligned_cols=152  Identities=17%  Similarity=0.151  Sum_probs=108.0

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC------------CcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS------------RRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~------------~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+.+..|++++|.|.+.+ |.+.|.|++++..+...            .+..+  .....+|+|.++...|+|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEe
Confidence            467889999999999854 88899999988654311            12222  1223489999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEE
Q psy8139         529 NRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI  608 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i  608 (1101)
                      |..|  .....|.|..++..+.       +... +....|.|.+.+.|.|.++|+++|..+.....         ..+.+
T Consensus        81 n~~~--~~~~~L~V~~~~~~p~-------i~~~-~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~  141 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMVSKPM-------IYWE-CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSY  141 (171)
T ss_dssp             TCCS--CEEEEEEEECCCCCCE-------EEEE-TTTTEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEE
T ss_pred             CCCC--cEEEEEEEECcCCCCE-------EEEe-cCCcEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEE
Confidence            8877  5667788876542210       0111 11137999999999999999999987753221         22333


Q ss_pred             ccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         609 SDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       609 ~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+  .++.|.|+|.|.|..|.......+
T Consensus       142 ~~--~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          142 QW--TNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             EC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ec--cCCCceEEEEEEcccCcccceeEE
Confidence            33  678899999999999986665544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.41  E-value=1.8e-12  Score=136.26  Aligned_cols=185  Identities=10%  Similarity=0.107  Sum_probs=117.8

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEECC--EE---e---e-----------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--FE---I---F-----------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~~---~---~-----------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|.+.+.+  .+.+.|++.+  ..   +   .           ...++.+..+  .+..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            35567899999999999999876  6789999853  11   1   0           1245555542  3567999999


Q ss_pred             cCCCCCEEEEEEEEeCCCce-EEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEECCe
Q psy8139         515 AALMDEGEIKCTATNRAGHS-ITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLHNGE  587 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~~g~  587 (1101)
                      +..+|+|.|.|.+.|..+.. ...+.|.|..    +|.+...+.   ...+..|+.++|.|.+.|. |.+ .+.|++++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAP---VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECC---CC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecC---CccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            99999999999999864321 1234677764    233321111   1134578999999999985 766 999999887


Q ss_pred             ecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCC
Q psy8139         588 PLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG  646 (1101)
Q Consensus       588 ~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~  646 (1101)
                      .+.......+...+   ..+.|.|......+ |.|+|.|.|..+.......+.+..+|.+|-
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~~  223 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPC  223 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-----
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCCC
Confidence            65311000010101   14578888888777 999999999877766666666666665553

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.41  E-value=2.3e-12  Score=138.88  Aligned_cols=174  Identities=14%  Similarity=0.178  Sum_probs=123.7

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccC------CCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIP------TPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTL  510 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p------~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l  510 (1101)
                      ..+.+...|..+.+.+|++++|.|.+.+.|      .+.+.|++.  +.   .+.         ...++.+...++..+|
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L   83 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL   83 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence            345566778889999999999999998887      678999984  22   111         1345666555566799


Q ss_pred             EEeecCCCCCEEEEEEEEeCCCce-EEEEEEeeccCCc------------------cccCCCCCCCeEEeeCCEEEEEEE
Q psy8139         511 IIHQAALMDEGEIKCTATNRAGHS-ITKARLRLEAPPT------------------IRLPKQYEDGLLFEMGEIIKLKVS  571 (1101)
Q Consensus       511 ~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V~~~p~------------------~~~~~~~~~~~~v~~g~~~~l~c~  571 (1101)
                      +|.++...|+|.|.|.+.|..+.. ...+.|.|..+|.                  +...  ......+..|++++|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQ--QSGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEE--ECCCEEECTTCCEEEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEe--CCCCEEEcCCCcEEEEEE
Confidence            999999999999999999876532 2235778876541                  1110  112236888999999999


Q ss_pred             EeecCC--CeeEEEECC--ee---cC----C----------CCceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         572 MAGMPP--PTARWLHNG--EP---LT----S----------GGRYEITH--TDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       572 ~~g~p~--~~v~W~~~g--~~---l~----~----------~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      +.+.+.  +.+.|+++.  ..   +.    .          ..++.+..  .....+|.|.++...|+|.|.|.|.|.
T Consensus       162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            998874  899999853  21   10    0          22344332  234678999999999999999999995

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.41  E-value=1.4e-12  Score=116.71  Aligned_cols=96  Identities=25%  Similarity=0.386  Sum_probs=85.5

Q ss_pred             CCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       449 ~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      |..||.|...|.++.+.+|+++.|.|.+.|.|.|.++|+++|..+...  .++.+...++..+|.|.++...|+|.|+|.
T Consensus         2 P~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             CCEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence            346788888899999999999999999999999999999999998754  367777777788999999999999999999


Q ss_pred             EEeCCCceEEEEEEeecc
Q psy8139         527 ATNRAGHSITKARLRLEA  544 (1101)
Q Consensus       527 a~n~~g~~~~s~~l~V~~  544 (1101)
                      |.|..|....++.|.|..
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999988888888863

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.41  E-value=3.3e-12  Score=133.04  Aligned_cols=140  Identities=11%  Similarity=0.045  Sum_probs=96.0

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEEEEEe--cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVT--DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE  679 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~l~v~--~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~  679 (1101)
                      ...+.+.+|.+...|.|+|.|.|..|.+.+ ...+...  .+|.||.++.+......                       
T Consensus        67 ~~~~~~~~L~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~~~~~~~~~~-----------------------  123 (215)
T 1cd9_B           67 NCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDV-----------------------  123 (215)
T ss_dssp             EEEEEGGGCCTTSCEEEEEEEEETTEEEECCCEEECGGGGBCCCCCEEEECCC---------------------------
T ss_pred             EEEECCcccccceEEEEEEEEECCCCCccCccEEEchHHceEeCCCcEEEEEEeccc-----------------------
Confidence            356677789999999999999999997533 2222211  25777776654433000                       


Q ss_pred             EEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEE-eCCCCCceeecccccCccEEEEcCCCCCceE
Q psy8139         680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRY  758 (1101)
Q Consensus       680 ~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y  758 (1101)
                                       ...+.+++.|+|++|.. +|..+.+|.|.|+ ..++..|..+.......+.++|.+|.|++.|
T Consensus       124 -----------------~~~~~~~~~l~W~~p~~-~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y  185 (215)
T 1cd9_B          124 -----------------VSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVY  185 (215)
T ss_dssp             --------------------CCSCEEEEEECCGG-GTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCE
T ss_pred             -----------------cCCCCCeEEEEEeCCCC-CCeEEEEEEEEEccCCCCCCcEEEecccCcceEEEEcCCCCCCEE
Confidence                             00023344455554432 2333579999999 6777788765433345688999999999999


Q ss_pred             EEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         759 QFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       759 ~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      .|+|+|.|..|.|.+|+++..+...
T Consensus       186 ~~~Vra~~~~g~G~wS~wS~~~~~~  210 (215)
T 1cd9_B          186 TLQMRCIRSSLPGFWSPWSPGLQLR  210 (215)
T ss_dssp             EEEEEEEESSSCCCCCCCCCCEEEC
T ss_pred             EEEEEeeECCCCCCCcCCCCcccee
Confidence            9999999999999999999887765

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.41  E-value=8.2e-12  Score=128.65  Aligned_cols=125  Identities=16%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139         599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV  678 (1101)
Q Consensus       599 ~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v  678 (1101)
                      .......+.|.+|.+++.|.|+|.|.|..|.+..........+| +|.++.+...+.+++.|+|++|.            
T Consensus        72 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~------------  138 (203)
T 2gee_A           72 VDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP------------  138 (203)
T ss_dssp             EETTCCEEEECSCCTTCEEEEEEEEESSSCBCCCEEEEEECCCC-CCEEEEEEEEETTEEEEEEECCS------------
T ss_pred             cCCCccEEEeCCCCCCCEEEEEEEEEeCCCccccEeeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC------------
Confidence            34456789999999999999999999998877655444444444 88888888888888888888653            


Q ss_pred             EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCce
Q psy8139         679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~  757 (1101)
                                                           ++++.+|.|.|+..++. .|.... .....++++|.+|.|++.
T Consensus       139 -------------------------------------~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~  180 (203)
T 2gee_A          139 -------------------------------------SIDLTNFLVRYSPVKNEEDVAELS-ISPSDNAVVLTNLLPGTE  180 (203)
T ss_dssp             -------------------------------------SCCCSEEEEEEEETTCGGGCEEEE-ECTTCCEEEECSCCTTCE
T ss_pred             -------------------------------------CCCccEEEEEEEECCCCCccEEEE-cCCCcCEEEECCCCCCCE
Confidence                                                 12477888888875443 333322 236789999999999999


Q ss_pred             EEEEEEEEcCCccCCCC
Q psy8139         758 YQFRITAENVVGFSEPG  774 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S  774 (1101)
                      |.|+|.|.|..|.|+|+
T Consensus       181 Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          181 YVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             EEEEEEEEETTEECCCE
T ss_pred             EEEEEEEecCCCcCCCe
Confidence            99999999999997764

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.41  E-value=1.2e-12  Score=137.24  Aligned_cols=172  Identities=12%  Similarity=0.124  Sum_probs=116.7

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--EE---ee----------------cCCcEEEEec--CCeeEEEEe
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--FE---IF----------------SSRRQRIVTD--NDISTLIIH  513 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~~---~~----------------~~~~~~~~~~--~~~~~l~I~  513 (1101)
                      |..+.+..|++++|.|.+.+.|  .+.+.|++..  ..   +.                ...++.+..+  .+..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            4456789999999999999865  6789999842  11   10                1245555543  345689999


Q ss_pred             ecCCCCCEEEEEEEEeCCC-----ceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEE
Q psy8139         514 QAALMDEGEIKCTATNRAG-----HSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARW  582 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~g-----~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W  582 (1101)
                      ++...|+|.|.|.+.|..|     .....+.|.|..    +|.+...+..   ..+..|+.+.|.|.+.|. |.| .+.|
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~~g~~v~L~C~~~g~~P~p~~v~W  163 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG---SAAQTNSMVTLGCLVKGYFPEPVTVTW  163 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC---SCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc---ccccCCCcEEEEEEEccEECCCCEEEE
Confidence            9999999999999998765     222335666654    2333221111   123469999999999985 877 9999


Q ss_pred             EECCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139         583 LHNGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASF  634 (1101)
Q Consensus       583 ~~~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~  634 (1101)
                      +++|..+...........+   ..+.|.|..+...| |.|+|.|.|..|......
T Consensus       164 ~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          164 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             GGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            9998765421100111111   13468899988888 999999999998755443

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.40  E-value=2.4e-12  Score=118.06  Aligned_cols=79  Identities=39%  Similarity=0.664  Sum_probs=61.8

Q ss_pred             EEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       705 ~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|+|.+|..+++.+|.+|.|+|+..+...|..+.......++++|.+|.|++.|.|+|.|.|..|.|++|..+..+++.
T Consensus        26 ~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~  104 (111)
T 1x5y_A           26 TLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR  104 (111)
T ss_dssp             EEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEETTEECCCCCCSSCBCCC
T ss_pred             EEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEEEcCCcCCCCccCCCCEEec
Confidence            3333333344445688999999888877898876544668899999999999999999999999999999887666553

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.40  E-value=1.6e-12  Score=134.94  Aligned_cols=169  Identities=13%  Similarity=0.155  Sum_probs=113.6

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEEee----------------cCCcEEEEec--CCeeEEEEeecC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFEIF----------------SSRRQRIVTD--NDISTLIIHQAA  516 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~~~----------------~~~~~~~~~~--~~~~~l~I~~l~  516 (1101)
                      |..+.+..|++++|.|.+.+.|  .+.+.|+++  +....                ...++.+...  ++..+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            5567889999999999999875  478999984  22110                1345555542  345689999999


Q ss_pred             CCCCEEEEEEEEeCCCceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEECCeecC
Q psy8139         517 LMDEGEIKCTATNRAGHSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLHNGEPLT  590 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~~g~~l~  590 (1101)
                      ..|+|.|.|.+.|.. .......|.|..    +|.+...+..   ..+..|+.+.|.|.+.|. |.| .+.|++++..+.
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~---~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~  162 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPG---SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  162 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCT---TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCC---cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence            999999999999863 112234566653    3333211111   124579999999999987 877 999999887643


Q ss_pred             CCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         591 SGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       591 ~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      ......+...+   ..+.|.|......+ |.|+|.|.|..|....
T Consensus       163 ~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          163 VHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             EEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             eEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            11000011111   14568888888766 9999999999887543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.40  E-value=3.7e-12  Score=132.31  Aligned_cols=133  Identities=24%  Similarity=0.291  Sum_probs=105.6

Q ss_pred             ceEEEcCccC-CccEEEEEEEEecCCCCCCCCCCcceEEEeccCC---CCCCeeeecCceeEEccCCeEEEEEEEeccCC
Q psy8139         406 TELMVSGLEP-GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP---AAAPSFIRALHDTTALEDEKVEFTVQVEGIPT  481 (1101)
Q Consensus       406 ~~l~i~~L~p-~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~---~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~  481 (1101)
                      ..|.|.++.. .|.|.|+|.|.|..|...    +..+.+.+...+   ..+|.+...|....+..|+.++|.|.+.|.|.
T Consensus        64 ~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~----~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~  139 (212)
T 2yd1_A           64 SILRIEPVRAGRDDAPYECVAENGVGDAV----SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT  139 (212)
T ss_dssp             EEEEESSCCTTTTCSEEEEEEECSSSCEE----EEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSC
T ss_pred             EEEEEEecCCCCcCceEEEEEEeCCCCeE----EeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCC
Confidence            5799999999 999999999999887521    233455554332   23478888888888999999999999999999


Q ss_pred             CeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE-EEEeeccCC
Q psy8139         482 PKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPP  546 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~~~p  546 (1101)
                      +.+.|++++..+... ..+. ...+   .|.|.++...|+|.|+|.|.|..|...+. +.|.|...+
T Consensus       140 p~i~W~~~~~~~~~~~~~~~-~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          140 PNIYWIKNQTKVDMSNPRYS-LKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             CEEEEEETTEECCTTSTTEE-EETT---EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CeEEEEECCeEcccCCCeEE-ccCC---eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            999999999988754 3332 2232   89999999999999999999999988765 788887654

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.39  E-value=3.1e-12  Score=139.22  Aligned_cols=182  Identities=14%  Similarity=0.185  Sum_probs=122.4

Q ss_pred             CceeEEccCCeEEEEEEEecc--CCCeEEEEECC--EEe------e-----------cCCcEEEE--ecCCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDG--FEI------F-----------SSRRQRIV--TDNDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g--~~~------~-----------~~~~~~~~--~~~~~~~l~I~~l  515 (1101)
                      |..+.+.+|++++|.|.+.+.  +.+.+.|++..  ...      .           ...++.+.  ...+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            667889999999999999875  56789998732  100      0           11345554  2345568999999


Q ss_pred             CCCCCEEEEEEEEeCC---------CceEEEEEEeecc---------------CCccccCCCCCCCeEEeeCCEEEEEEE
Q psy8139         516 ALMDEGEIKCTATNRA---------GHSITKARLRLEA---------------PPTIRLPKQYEDGLLFEMGEIIKLKVS  571 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~---------g~~~~s~~l~V~~---------------~p~~~~~~~~~~~~~v~~g~~~~l~c~  571 (1101)
                      ..+|+|.|.|.+.|..         ........|.|..               ++.+..++    ...+.+|++++|.|.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p----~~~v~~G~~v~L~C~  162 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP----SVSKGLRQTATLTCT  162 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS----EEEECTTCCEEEEEE
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC----cEEEecCCCEEEEEE
Confidence            9999999999999861         1122234666665               33333222    157889999999999


Q ss_pred             Eee-cC-CCeeEEEEC--CeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC---cee
Q psy8139         572 MAG-MP-PPTARWLHN--GEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE---DVA  632 (1101)
Q Consensus       572 ~~g-~p-~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~---~~~  632 (1101)
                      +.+ .+ .+.+.|++.  +....            ...++.....+...+|.|.++++.|+|.|.|.+.|..+.   -..
T Consensus       163 ~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~  242 (280)
T 3fku_X          163 GNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGG  242 (280)
T ss_dssp             CCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBC
T ss_pred             ecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECC
Confidence            998 44 489999872  22211            124566665666778999999999999999999997632   122


Q ss_pred             EEEEEEecCCCC
Q psy8139         633 SFLVTVTDRPLP  644 (1101)
Q Consensus       633 s~~l~v~~~P~~  644 (1101)
                      ...|.|...|..
T Consensus       243 ~t~l~V~~~~~~  254 (280)
T 3fku_X          243 GTKLTVLGQPKA  254 (280)
T ss_dssp             CCEEEEC-----
T ss_pred             CEEEEECCCCCC
Confidence            345666655443

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-12  Score=117.37  Aligned_cols=80  Identities=31%  Similarity=0.605  Sum_probs=63.1

Q ss_pred             EEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       704 i~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      ++|+|.+|..+++.+|.+|.|+|+..+...|..+.......+.++|.+|.|++.|.|+|+|.|..|.|++|..+..+++.
T Consensus        24 v~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~  103 (110)
T 2yuw_A           24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK  103 (110)
T ss_dssp             EEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEEETTEECCCEECSSCEECC
T ss_pred             EEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCCCCEEec
Confidence            33333334444556788999999988877888876544678899999999999999999999999999999888777654

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=1.4e-13  Score=125.81  Aligned_cols=86  Identities=34%  Similarity=0.649  Sum_probs=75.4

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc-CCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPL  776 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~  776 (1101)
                      .++.++++|+|.+|..++|.+|++|.|+|+..++..|..+.......++++|.+|.|++.|.|+|.|.|..|. |++|..
T Consensus        21 ~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~~s~~S~~  100 (112)
T 1bpv_A           21 NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP  100 (112)
T ss_dssp             EEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             EeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
Confidence            5789999999999988999999999999999888889887644466789999999999999999999999996 999877


Q ss_pred             CCcEEec
Q psy8139         777 SEPLTVT  783 (1101)
Q Consensus       777 s~~~t~~  783 (1101)
                      +..+++.
T Consensus       101 ~~~~t~~  107 (112)
T 1bpv_A          101 SDAITCR  107 (112)
T ss_dssp             EEEECSC
T ss_pred             CCCEEeC
Confidence            7666543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.38  E-value=1.9e-12  Score=132.06  Aligned_cols=130  Identities=23%  Similarity=0.311  Sum_probs=104.3

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      ..|.|.+++..|.|.|+|.+.|..|....    ....+.+.    .+|.+...+....+..|+.+.|.|.+.|.|.+.+.
T Consensus        62 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~----~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~  133 (192)
T 2iep_A           62 QLLTILSVEDSDDGIYCCTANNGVGGAVE----SCGALQVK----MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS  133 (192)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSSCCEE----EEEEEEEE----EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEE
T ss_pred             cEEEEcCCCcccCeEEEEEEEcCCCceeE----eEEEEEEE----eCCccccCCcceEEeCCCcEEEEEEEeccCCceEE
Confidence            46999999999999999999998776322    12333332    45677777778889999999999999999999999


Q ss_pred             EEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeeccCC
Q psy8139         486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPP  546 (1101)
Q Consensus       486 W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~~p  546 (1101)
                      |++++..+....++.....+   .|.|.++...|+|.|+|.|.|..|...+ ...|.|..+|
T Consensus       134 W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999988876666554333   7999999999999999999999998744 5778887664

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.38  E-value=1.9e-12  Score=139.26  Aligned_cols=171  Identities=13%  Similarity=0.161  Sum_probs=107.4

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C-E--Eeec-C-------------CcEEEE--ecCCeeEEE
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G-F--EIFS-S-------------RRQRIV--TDNDISTLI  511 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g-~--~~~~-~-------------~~~~~~--~~~~~~~l~  511 (1101)
                      |.+...|..+.+.+|++++|.|.+.+.|.+.+.|++.  + .  .+.. .             .+....  ...+..+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            4455667788999999999999999999999999982  1 1  1110 0             011111  122345799


Q ss_pred             EeecCCCCCEEEEEEEEeCCCc---eEEEEEEeeccCC-----------------ccccCCCCCCCeEEeeCCEEEEEEE
Q psy8139         512 IHQAALMDEGEIKCTATNRAGH---SITKARLRLEAPP-----------------TIRLPKQYEDGLLFEMGEIIKLKVS  571 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~---~~~s~~l~V~~~p-----------------~~~~~~~~~~~~~v~~g~~~~l~c~  571 (1101)
                      |.++..+|+|.|.|.+.|..+.   ......|.|..++                 .+..   .+..+.+..|++++|.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~---~p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQ---AQSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEEC---CCCCEEEETTCCEEECCE
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEE---eCCEEEEcCCCCEEEEEE
Confidence            9999999999999999998762   2234567776532                 2222   223567889999999999


Q ss_pred             Eeec-CCCeeEEEECCe--ecC------------CCCceEEE--eecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         572 MAGM-PPPTARWLHNGE--PLT------------SGGRYEIT--HTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       572 ~~g~-p~~~v~W~~~g~--~l~------------~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      ..+. +.+.+.|++.+.  .+.            ...++.+.  ......+|.|.+++..|+|.|.|.+.+.
T Consensus       160 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          160 YETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             EECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            8875 789999998431  110            01234333  2234567999999999999999999864

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.38  E-value=9.6e-12  Score=127.23  Aligned_cols=122  Identities=18%  Similarity=0.285  Sum_probs=100.3

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-eE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v  484 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|...    +..+.+.+.    .+|.+...|.+..+..|+.+.|.|.+.|.|.| .+
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v  139 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQTFV----SQPGYVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL  139 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEEEE----CCCEEEEEC----CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEE
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCcee----cccEEEEEe----cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEE
Confidence            5799999999999999999999776532    233555553    56888888888999999999999999999999 99


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EEEEEee
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRL  542 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V  542 (1101)
                      .|++++..+......     .....|.|.++.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       140 ~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          140 LWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            999999887654432     334589999987  78999999999999885 5777777

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.37  E-value=5.2e-12  Score=128.31  Aligned_cols=130  Identities=21%  Similarity=0.316  Sum_probs=101.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCc--eeEEccCCeEEEEEEEeccCCC
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH--DTTALEDEKVEFTVQVEGIPTP  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~--~~~v~~g~~v~L~C~~~g~p~~  482 (1101)
                      +.+|.|.++++.|.|.|+|.+.|..+.....   ..+.+.+.    .+|.+...+.  ...+..|+.+.|.|.+.|.|.+
T Consensus        56 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~---~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  128 (189)
T 2v5t_A           56 NNNLQILNINKSDEGIYRCEGRVEARGEIDF---RDIIVIVN----VPPAISMPQKSFNATAERGEEMTFSCRASGSPEP  128 (189)
T ss_dssp             TSCEEETTCCGGGCEEEEEEEEETTTTEEEE---EEEEEEEE----EEEEEECSCCEEEEETTSCCCEEEECEEEEESCC
T ss_pred             CCCEEEeeCCHhHCcEEEEEEEEcCCCceEE---EEEEEEec----CCCCcccccccccccccCCCcEEEEEEEccCCCC
Confidence            4579999999999999999999987543211   22333332    3444443333  4567889999999999999999


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      .+.|+++|..+.....+.+...+  ..|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus       129 ~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          129 AISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEETTEECCCSSSEEEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEECCEECcCCCcEEEecCC--CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            99999999998877766654433  489999999999999999999999998888877764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.36  E-value=8.3e-12  Score=127.75  Aligned_cols=130  Identities=18%  Similarity=0.211  Sum_probs=104.6

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeee---ecCceeEEccCCeEEEEEEEeccCCC
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI---RALHDTTALEDEKVEFTVQVEGIPTP  482 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~---~~p~~~~v~~g~~v~L~C~~~g~p~~  482 (1101)
                      ..|.|.++...|.|.|+|.|.|..|....     .+.+.+..    +|.+.   ..+....+..|+.+.|.|.+.|.|.+
T Consensus        63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~-----~~~l~v~~----~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p  133 (197)
T 3lcy_A           63 HTLTVMTEEQEDEGVYTCIATNEVGEVET-----SSKLLLQA----TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP  133 (197)
T ss_dssp             EEEEEECCSGGGCEEEEEEEECSSCEEEE-----EEEEEEEE----EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC
T ss_pred             EEEEEecCCccCCEEEEEEEECCCCceeE-----EEEEEEEc----CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC
Confidence            37999999999999999999998775432     23333321    22221   12355678899999999999999999


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCC-CCCEEEEEEEEeCCCceEEEEEEeecc
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL-MDEGEIKCTATNRAGHSITKARLRLEA  544 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~-~d~g~Y~C~a~n~~g~~~~s~~l~V~~  544 (1101)
                      .+.|++++..+.....+.+...+....|.|.++.. .|.|.|+|.|.|..|....++.|.|..
T Consensus       134 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          134 AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             eeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            99999999999888888877777777999999995 899999999999999988888887753

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.36  E-value=7.3e-12  Score=130.95  Aligned_cols=171  Identities=11%  Similarity=0.104  Sum_probs=114.5

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--EE---ee---c-------------CCcEEEEec--CCeeEEEEe
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--FE---IF---S-------------SRRQRIVTD--NDISTLIIH  513 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~~---~~---~-------------~~~~~~~~~--~~~~~l~I~  513 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|++++  ..   +.   .             ..++.+...  .+..+|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            5567889999999999999876  6789999843  11   10   0             245555432  345689999


Q ss_pred             ecCCCCCEEEEEEEEeCCCce-E--EEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEE
Q psy8139         514 QAALMDEGEIKCTATNRAGHS-I--TKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLH  584 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~g~~-~--~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~  584 (1101)
                      ++...|+|.|.|.+.|..+.. .  ..+.|.|..    +|.+...+..   ..+..|+.+.|.|.+.|. |.| .+.|++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~---~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  163 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG---CSDTSGSSVTLGCLVKGYFPEPVTVKWNY  163 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC---SCCSCSSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc---cccCCCCcEEEEEEEEEEeCCCeEEEEec
Confidence            999999999999999976432 1  235666663    3333221111   124568999999999987 888 999999


Q ss_pred             CCeecC--CCCceEEE-eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         585 NGEPLT--SGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       585 ~g~~l~--~~~~~~~~-~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      ++....  ........ .-...+.|.|......+ |.|+|.|.|..|....+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          164 GALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             GTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            876421  00000000 00014678888888766 99999999999864443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=6.4e-13  Score=140.56  Aligned_cols=169  Identities=13%  Similarity=0.149  Sum_probs=115.9

Q ss_pred             CceeEEccCCeEEEEEEEeccCC-C-eEEEEECC--EEe---e---------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPT-P-KVSWYKDG--FEI---F---------SSRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~-~-~v~W~~~g--~~~---~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      |..+.+..|++++|.|.+.+.+. + .+.|++++  ...   .         ...++.....++..+|.|.++...|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            66778899999999999987543 4 69999853  211   0         1245655555666799999999999999


Q ss_pred             EEEEEEeCCCc---eEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeecCC--CeeEEEECCeecCCCC
Q psy8139         523 IKCTATNRAGH---SITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP--PTARWLHNGEPLTSGG  593 (1101)
Q Consensus       523 Y~C~a~n~~g~---~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~--~~v~W~~~g~~l~~~~  593 (1101)
                      |.|.+.|..+.   ....+.|.|..    +|.+...+.   ...+..|+.+.|.|.+.|.++  +.++|+++|..+..+.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  182 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPP---SSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGV  182 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECC---CHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCC---ChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCc
Confidence            99999998873   12234566643    333321111   011224778999999998643  4899999999886542


Q ss_pred             ceE-EEe-ec----ceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         594 RYE-ITH-TD----RYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       594 ~~~-~~~-~~----~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ... ... .+    ..+.|.|......|.|.|+|.|.|..+..
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          183 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             EECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             cccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            110 000 11    13568889999999999999999987763

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=1.3e-11  Score=131.04  Aligned_cols=180  Identities=13%  Similarity=0.132  Sum_probs=118.9

Q ss_pred             eeecCceeEEccCCeEEEEEEEecc--CCCeEEEEECC--E---Eee--------------cCCcEEEEecC--CeeEEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDG--F---EIF--------------SSRRQRIVTDN--DISTLI  511 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g--~---~~~--------------~~~~~~~~~~~--~~~~l~  511 (1101)
                      +...|..+.+..|++++|.|.+.+.  +.+.+.|++..  .   .+.              ...++.+....  +..+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            4455778889999999999999885  66789999842  1   111              23455554332  466899


Q ss_pred             EeecCCCCCEEEEEEEEeCCC-c------eEEEEEEeeccC-------CccccCCCCCCCeEEeeCCEEEEEEEEeec-C
Q psy8139         512 IHQAALMDEGEIKCTATNRAG-H------SITKARLRLEAP-------PTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-P  576 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g-~------~~~s~~l~V~~~-------p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p  576 (1101)
                      |.++..+|+|.|.|.+.+..+ .      ......|.|...       |.+....  +....+..|+.+.|.|.+.|. |
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~--p~~~~~~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL--PSIAETKLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC--CCGGGGGSSSCEEEEEEEEEESS
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC--CChhhcccCCCceEEEEEeeEEC
Confidence            999999999999999998631 1      112356777653       2222111  111123458899999999986 5


Q ss_pred             C-CeeEEEECCe-ecCCCCce-EEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         577 P-PTARWLHNGE-PLTSGGRY-EITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       577 ~-~~v~W~~~g~-~l~~~~~~-~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      . +.+.|++++. .+...... .....+   ....|.|..... + |.|+|.|.|..+.......+.+
T Consensus       162 ~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          162 DVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            4 7999999987 55322100 011111   134688877664 4 9999999999988766666655

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=1.4e-12  Score=121.88  Aligned_cols=108  Identities=27%  Similarity=0.490  Sum_probs=81.2

Q ss_pred             CCCceeEEEEEEecCCCCCCcc--EEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceE
Q psy8139         627 LGEDVASFLVTVTDRPLPPGKA--KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF  704 (1101)
Q Consensus       627 ~G~~~~s~~l~v~~~P~~P~~~--~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si  704 (1101)
                      .|..+.+..+.+.++|.+|.++  .+...+.+++.|+|.+|                                       
T Consensus         3 ~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p---------------------------------------   43 (121)
T 1wf5_A            3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP---------------------------------------   43 (121)
T ss_dssp             CCCCCCCCCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCC---------------------------------------
T ss_pred             CCcccceEEEEEeeCCccCCCcceeeEeccCCEEEEEEcCC---------------------------------------
Confidence            4666667777777888888888  55555566666666644                                       


Q ss_pred             EEEeeCCCCCCCCCcceEEEEEEeCCCCCceee-cccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA-SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       705 ~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                              .+++++|.+|.|+|+..+ ..|..+ .......++++|.+|.|++.|.|+|.|.|..|.|++|..+..+++
T Consensus        44 --------~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~t  113 (121)
T 1wf5_A           44 --------FDGNSPLIRYILEMSENN-APWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL  113 (121)
T ss_dssp             --------CCCSSCEEEEEEEEECTT-CCCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCCSCEEC
T ss_pred             --------CCCCCcceEEEEEEEcCC-CCceEeEcccCCCccEEEECCcCCCCEEEEEEEEEcCCccCCCcCCcceeEc
Confidence                    334456888888888765 577765 333467789999999999999999999999999999887754443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.36  E-value=1.3e-11  Score=133.52  Aligned_cols=176  Identities=16%  Similarity=0.240  Sum_probs=120.5

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccC-----CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIP-----TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLI  511 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-----~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~  511 (1101)
                      ..+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|++..  .   .+.         ...++.+...++..+|+
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            445566778888999999999999998877     4789999842  1   111         13456665556667999


Q ss_pred             EeecCCCCCEEEEEEEEeCCCceE-EEEEEeeccCCcccc---CC-----------------CCCCCeEEeeCCEEEEEE
Q psy8139         512 IHQAALMDEGEIKCTATNRAGHSI-TKARLRLEAPPTIRL---PK-----------------QYEDGLLFEMGEIIKLKV  570 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V~~~p~~~~---~~-----------------~~~~~~~v~~g~~~~l~c  570 (1101)
                      |.++...|+|.|.|.+.|..+... ....|.|..++....   +|                 ..+....+..|++++|.|
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C  173 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC  173 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence            999999999999999998755322 235677765432100   00                 011245788899999999


Q ss_pred             EEeecCC--CeeEEEEC--Ceec-------------------CCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEe
Q psy8139         571 SMAGMPP--PTARWLHN--GEPL-------------------TSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       571 ~~~g~p~--~~v~W~~~--g~~l-------------------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .+.+.+.  +.+.|++.  +..+                   ....++.+...  ....+|.|.+++..|+|.|.|.|.|
T Consensus       174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~  253 (268)
T 1x9q_A          174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGAS  253 (268)
T ss_dssp             EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            9998763  89999874  2211                   11234554432  2357899999999999999999988


Q ss_pred             C
Q psy8139         626 S  626 (1101)
Q Consensus       626 ~  626 (1101)
                      .
T Consensus       254 ~  254 (268)
T 1x9q_A          254 Y  254 (268)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.36  E-value=3e-11  Score=126.56  Aligned_cols=171  Identities=9%  Similarity=0.087  Sum_probs=114.0

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Eee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EIF--------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+..+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3467889999999999998765  4789999842  1   110              1245665543  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCC---c---eEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEE
Q psy8139         516 ALMDEGEIKCTATNRAG---H---SITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWL  583 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g---~---~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~  583 (1101)
                      ...|+|.|.|.+.+..|   .   ....+.|.|..    +|.+...+..   ..+..|..+.|.|.+.+. |.+ .++|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~---~~~~~g~~v~L~C~~~g~~P~p~~v~W~  163 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC---ENSNPSSTVAVGCLAQDFLPDSITFSWK  163 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT---TCCCSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC---cccCCCCcEEEEEEEEEEeCCCeEEEeE
Confidence            99999999999998754   1   11234677763    2333211100   123578999999999987 766 99999


Q ss_pred             E-CCeecCCCCceE-EEeec---ceEEEEEccCCC--CCCeEEEEEEEeCCCCcee
Q psy8139         584 H-NGEPLTSGGRYE-ITHTD---RYLNLRISDARR--ADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       584 ~-~g~~l~~~~~~~-~~~~~---~~~sl~i~~l~~--~~~y~y~c~A~N~~G~~~~  632 (1101)
                      + +|..+.....+. ....+   ..+.|.|.....  .|.|.|+|.|.|..|....
T Consensus       164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            9 888775300000 00001   134577777665  6789999999999887544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.35  E-value=2.8e-12  Score=132.70  Aligned_cols=135  Identities=15%  Similarity=0.187  Sum_probs=101.6

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      .+.+|.|.+++..|+|.|+|.+.|..+...    +..+.+.+.. +...|.+...+..  +..|+++.|.|.+.+.| +.
T Consensus        69 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~----~~~~~l~V~~-~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~  140 (208)
T 3r4d_A           69 SNGSLLFQMITMKDMGVYTLDMTDENYRRT----QATVRFHVHQ-PVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-AN  140 (208)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEECSSCEEE----EEEEEEEEEC-CCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CE
T ss_pred             cCCeEEEccccccCCeEEEEEEEcccCcee----EEEEEEEecc-CCCCCEEecCCce--EeeCCCEEEEEECCCCC-Cc
Confidence            346899999999999999999999754221    2334444442 2344666555444  88999999999999976 79


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeeccCCcc
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTI  548 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~  548 (1101)
                      +.|++++..+....++.+...+  ..|.|.++...|+|.|+|.|.|..|...+ ...|.|..+|..
T Consensus       141 i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          141 IQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             eEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            9999999998877777665444  38999999999999999999999998765 467777776643

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.35  E-value=2.2e-12  Score=143.06  Aligned_cols=256  Identities=10%  Similarity=-0.001  Sum_probs=143.1

Q ss_pred             CCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcce
Q psy8139         642 PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG  721 (1101)
Q Consensus       642 P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~  721 (1101)
                      ..||.++.+.....+++.|+|++|...                                              .++.+.+
T Consensus         4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~----------------------------------------------~~~~~~~   37 (314)
T 3bpo_C            4 QPPVTNLSVSVENLCTVIWTWNPPEGA----------------------------------------------SSNCSLW   37 (314)
T ss_dssp             CCCCEEEEEEEETTTEEEEEEECCSSC----------------------------------------------CCSSCCC
T ss_pred             CCCCcceEEEeCCceEEEEEEcCCCCC----------------------------------------------CCCceEE
Confidence            467788888777777777777765422                                              2234667


Q ss_pred             EEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEc-CCccCCCCCCCCcEEecCCCCCCCCCcccc--cc
Q psy8139         722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN-VVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--AL  798 (1101)
Q Consensus       722 Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n-~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~  798 (1101)
                      |.|.+..    .|....    ....+.+.+|.+++.|.|+|.|.+ ..|.|.+|++....+......|+.+|.++.  ..
T Consensus        38 Y~v~~~~----~~~~~~----~~~~~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~  109 (314)
T 3bpo_C           38 YFSHFGD----KQDKKI----APETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWH  109 (314)
T ss_dssp             EEECCC------CCCEE----ESSSEEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEE
T ss_pred             EEEEecc----cCceEe----ccccEEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEEC
Confidence            8777643    222211    123456678999999999999964 677777776665343344577888888876  33


Q ss_pred             cccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCce---eeeec--cccccCCCC
Q psy8139         799 HDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDY---DIVET--NEHTGTGAP  873 (1101)
Q Consensus       799 ~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~---~~v~~--~~~~~~~~~  873 (1101)
                      ..+++.+.|.|+...             +...            .|.+.|+..+. ..+..   .....  .......+.
T Consensus       110 ~~~~~~c~W~~~~~~-------------~~~~------------~Y~l~y~~~~~-~~~~~C~~~~~~~~~~~c~~~~~~  163 (314)
T 3bpo_C          110 NLSYMKCSWLPGRNT-------------SPDT------------NYTLYYWHRSL-EKIHQCENIFREGQYFGCSFDLTK  163 (314)
T ss_dssp             TTTEEEEEEECCC----------------CCC------------CEEEEEEESSC-SSCEECCCEEEETTEEEEEEECCC
T ss_pred             CCCeEEEEECCCCCC-------------CCCc------------cEEEEEEeCCC-CccccCcCeecCCCeEEEEECCCC
Confidence            456778889875432             1233            67776654432 12211   11100  111111111


Q ss_pred             CCCCCccCcccce--eeccccccc--CceeecccCCCCccCCCCCChhhhhhhhhhhccc-cccccccchhhcccccchh
Q psy8139         874 SDNENESDYFPEK--TIDESVYGY--DTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKD-RESSVKGKEEEAKVIKDDE  948 (1101)
Q Consensus       874 ~~l~~~~~~t~Y~--V~a~n~~G~--~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~v-p~~~~nG~i~gY~I~~~~~  948 (1101)
                        + ....++.|.  |.|.|..|.  +..+.....+.+...||.++++. ...++..|.| ||...++.+.+|.|     
T Consensus       164 --~-~~~~~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~~~~~~~l~Yev-----  234 (314)
T 3bpo_C          164 --V-KDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCLFYEV-----  234 (314)
T ss_dssp             -----------CCEEEEEEETTSCSCCEEEEECSSSSEECCCCEEEEEE-EETTEEEEEEECCTTCCGGGEEEEE-----
T ss_pred             --c-cccceeEEEEEEEEEcCCCceecccEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCCccCCceEEEEE-----
Confidence              0 011355666  999999987  33333333444555799999997 4223444455 55556777889999     


Q ss_pred             hhhhccccccccccc------------ccCCceeEeecCCCCCCCceeec
Q psy8139         949 YYENLGDVLTKKYSL------------PVNSDIQIKIDKPDDEPDYVIKG  986 (1101)
Q Consensus       949 ~y~~~~~~~~~~~~l------------~~~~~~~~~i~~~~~~~~~~~~~  986 (1101)
                      .|+..++........            .......++|.+|.+|+.|.|..
T Consensus       235 ~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qV  284 (314)
T 3bpo_C          235 EVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI  284 (314)
T ss_dssp             EEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEE
T ss_pred             EEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEE
Confidence            888776543322111            11356688999999999999998

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.35  E-value=2.7e-12  Score=135.03  Aligned_cols=141  Identities=17%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec-CCCC--CCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139         601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD-RPLP--PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~-~P~~--P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      ...+++++.+|.+++.|.|+|.|.|..|.+..+..+.+.. .+.+  |..+.....+.+++.|+|.+|..+|| +|++|.
T Consensus        43 ~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~~~sv~l~W~~P~~~~G-~i~~Y~  121 (232)
T 4go6_B           43 PDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSG-KIIEYS  121 (232)
T ss_dssp             ------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEETTEEEEEEECCSCCSS-CCCEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeEEecCCCEEEEEEeCCCCCCC-ceeeEE
Confidence            3456789999999999999999999999887655544443 2222  22334455677888888888876665 667777


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccc-------cCccEEEEc
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-------VEDTELMVS  750 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~-------~~~~~~~i~  750 (1101)
                      |+|....+........                    .             ......|..+....       .....+.+.
T Consensus       122 v~~~~~~~~~~~~~~~--------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (232)
T 4go6_B          122 VYLAIQSSQAGGELKS--------------------S-------------TPAQLAFMRVYCGPSPSCLVQSSSLSNAHI  168 (232)
T ss_dssp             EEEEEC----------------------------------------------CCEEEEEEEEESSSEEEEEHHHHTTBCB
T ss_pred             EEEEECCCCCcceeee--------------------c-------------cCCceeeEEEEeccCceEEEEccccEEeee
Confidence            6663321111000000                    0             00000111111110       122233456


Q ss_pred             CCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         751 GLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       751 ~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      +|.+++.|.|+|.|.|.+|.|++|+
T Consensus       169 ~L~~~t~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          169 DYTTKPAIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             EESSSEEEEEEEEEECSSCBCCCEE
T ss_pred             cCccCCceEEEEEEECCCcCCCCcc
Confidence            8999999999999999999988754

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.35  E-value=1.7e-11  Score=128.12  Aligned_cols=169  Identities=12%  Similarity=0.072  Sum_probs=114.9

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Eee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EIF--------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~~--------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+..+  .+..+|+|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4457889999999999998865  5789999842  1   111              1245665543  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCCc---eEEEEEEeeccC----CccccCCCCCCCeEEeeCCEEEEEEEEeec-CC--CeeEEEEC
Q psy8139         516 ALMDEGEIKCTATNRAGH---SITKARLRLEAP----PTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP--PTARWLHN  585 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g~---~~~s~~l~V~~~----p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~--~~v~W~~~  585 (1101)
                      ..+|+|.|.|.+.+..+.   ....+.|.|...    |.+...+.    ..+..|+.+.|.|.+.+. |.  +.+.|+++
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~----~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~  162 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTL----PPALSSDPVIIGCLIHDYFPSGTMNVTWGKS  162 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECC----CSSSCCSSEEEEEEEEEEBSCCCEEEEESCC
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeec----ccccCCCcEEEEEEEEeEECCCcEEEEEecC
Confidence            999999999999997653   122356777642    33322111    123568899999999987 65  79999998


Q ss_pred             CeecCCC-CceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         586 GEPLTSG-GRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       586 g~~l~~~-~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      +..+... ........+.   .+.|.|......|.|.|+|.|.|..|...
T Consensus       163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          163 GKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            8765210 0000101111   23588888888899999999999988643

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.2e-12  Score=121.95  Aligned_cols=108  Identities=31%  Similarity=0.560  Sum_probs=85.6

Q ss_pred             CCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEE
Q psy8139         627 LGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTI  706 (1101)
Q Consensus       627 ~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l  706 (1101)
                      .|..+....+.+.++|++|.++.+..++.+++.|+|.+|.+++                                     
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g-------------------------------------   45 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDG-------------------------------------   45 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSCEEEEEEETTEEEEEECCCSCCC-------------------------------------
T ss_pred             CCcccEEEEEEeecCCCcCCCCEEEEecCCEEEEEEcCCCcCC-------------------------------------
Confidence            4555666777777899999999888888888888888765443                                     


Q ss_pred             EeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         707 RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       707 ~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                               |.+|++|.|+|+..+...|..+... ...++++|.+|.|++.|.|+|.|.|..|.|++|..+..++
T Consensus        46 ---------g~~i~~Y~v~~~~~~~~~w~~~~~~-~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~s~~~~  110 (120)
T 2yux_A           46 ---------NAAITGYTIQKADKKSMEWFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESA  110 (120)
T ss_dssp             ---------SSCCCCCCEEEEETTTCCCEEEESS-CCSSCCEECCCCSSEEEEEEECCCSSSCSCSSCEECSSCE
T ss_pred             ---------CCCceEEEEEEEECCCCceEEeeec-CCcCEEEECCCCCCCEEEEEEEEeeCCcCCCCccCcCCce
Confidence                     3567788888887777788776432 5678899999999999999999999999999987665443

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=2.5e-12  Score=121.32  Aligned_cols=116  Identities=28%  Similarity=0.384  Sum_probs=82.5

Q ss_pred             eEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCC
Q psy8139         632 ASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP  711 (1101)
Q Consensus       632 ~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP  711 (1101)
                      ..+.+.+.++|++|.++.+..++.+++.|+|.+|.                                             
T Consensus         7 ~~~~~~v~~~P~~P~~~~~~~~~~~sv~l~W~p~~---------------------------------------------   41 (127)
T 1uey_A            7 GPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD---------------------------------------------   41 (127)
T ss_dssp             CCCCCCCCCSCCCCEEEEEECCSSSCEEEEEECCC---------------------------------------------
T ss_pred             EEEEEEeecCCcCCCCcEEEEccCCEEEEEEECCC---------------------------------------------
Confidence            34556677888999888887777778888887542                                             


Q ss_pred             CCCCCCCcceEEEEEEeCC--CCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCC
Q psy8139         712 EYDGGSPVLGYLVEHRRTG--SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA  789 (1101)
Q Consensus       712 ~~~~~~~i~~Y~V~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~  789 (1101)
                        +++++|++|.|+|+...  ...|..+.......+. .+.+|.|++.|.|+|.|.|..|.|++|..+..+++ .+..|.
T Consensus        42 --~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~T-~~~~P~  117 (127)
T 1uey_A           42 --DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT-KASEPD  117 (127)
T ss_dssp             --CCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCTTCEECCEEEEEESSCBCCCCSCCCCEEC-CCSSCS
T ss_pred             --CCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCCCCEEEEEEEEEeCCccCCccccccceEc-CCCCCC
Confidence              33445777777777653  3467665543344455 57799999999999999999999999887533332 236777


Q ss_pred             CCCcccc
Q psy8139         790 AAPSFIR  796 (1101)
Q Consensus       790 ~~p~~~~  796 (1101)
                      .+|.++.
T Consensus       118 ~~P~~v~  124 (127)
T 1uey_A          118 KNPTSGP  124 (127)
T ss_dssp             SCSSCCC
T ss_pred             CCCceeE
Confidence            7787664

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.34  E-value=4.2e-12  Score=127.86  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=107.2

Q ss_pred             ceeEEccCCeEEEEEEEec-cCCCeEEEEEC-CEEee------------cC--CcEEEEecCCeeEEEEeecCCCCCEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEG-IPTPKVSWYKD-GFEIF------------SS--RRQRIVTDNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~-g~~~~------------~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|++. +..+.            ..  .++.+  .....+|.|.+++..|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            4567899999999998854 34679999994 32221            11  33443  12334799999999999999


Q ss_pred             EEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecce
Q psy8139         524 KCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY  603 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~  603 (1101)
                      +|.+.+.. .......|.|..++..+        .....+..+.|.|.+.+.|.|.+.|++++..+..         ...
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~~~P--------~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~---------~~~  146 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMVSKP--------MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRS---------LRQ  146 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCCCCC--------EEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEE---------ESS
T ss_pred             EEEEEcCC-eEEEEEEEEEECCCCCC--------EEEecCCCEEEEEEeCCCCCCEEEEEECCeECcC---------CCC
Confidence            99998766 44556778887653211        1223456699999994339999999999987641         113


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .++.+..  ..|.|.|+|.|.|..|.......
T Consensus       147 ~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          147 KTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             SEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            3455532  67899999999999987655443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.34  E-value=2.7e-11  Score=123.09  Aligned_cols=159  Identities=13%  Similarity=0.108  Sum_probs=113.1

Q ss_pred             eEEccCCeEEEEEEEeccCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      +.+..|++++|.|.+ +.|.|  .|.|.+.+..+   .....  ..+...|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~   90 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   90 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence            588999999999999 88888  99999854333   12222  344568999999999999999999999888778899


Q ss_pred             EeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC----CeeEEEECCeecCCCCceE--EE-----e-ecc----
Q psy8139         540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP----PTARWLHNGEPLTSGGRYE--IT-----H-TDR----  602 (1101)
Q Consensus       540 l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~----~~v~W~~~g~~l~~~~~~~--~~-----~-~~~----  602 (1101)
                      |.|..+|.......  .  ....|+.. |.|.+.+. |.    +++.|++++.++.......  +.     . .+.    
T Consensus        91 ltV~~~P~~~~i~~--~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  165 (210)
T 1gsm_A           91 LLVYAFPNQLTVSP--A--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLF  165 (210)
T ss_dssp             EEEEBCCSEEEEES--S--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCE
T ss_pred             EEEEecCCCcEEcc--c--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEE
Confidence            99999886533111  0  34457777 99999985 63    4899999999986432111  10     0 001    


Q ss_pred             --eEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         603 --YLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       603 --~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                        +.++.+......+.+.|+|.|.+..-...
T Consensus       166 ~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~  196 (210)
T 1gsm_A          166 RVTERWRLPPLGTPVPPALYCQATMRLPGLE  196 (210)
T ss_dssp             EEEEEEECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred             EEEEEEeecCCcccCCceEEEEEEeeCCCCc
Confidence              22344445555666899999998764433

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.34  E-value=3.9e-12  Score=118.76  Aligned_cols=91  Identities=27%  Similarity=0.419  Sum_probs=60.9

Q ss_pred             EEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeec---ccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS---PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       704 i~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      +.|+|++|..++|.+|++|.|+|+..+...|....   ......++++|.+|.|++.|.|+|.|+|..|.|++|....+.
T Consensus        23 v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~  102 (122)
T 2e3v_A           23 AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  102 (122)
T ss_dssp             EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEE
T ss_pred             EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEEEEEEeCCccCCCccccccc
Confidence            44455555455556688999999888877783211   122567899999999999999999999999999998776653


Q ss_pred             EecCCCCCCCCCcccc
Q psy8139         781 TVTYQRSPAAAPSFIR  796 (1101)
Q Consensus       781 t~~~~~~P~~~p~~~~  796 (1101)
                      +..  ..++.+|....
T Consensus       103 t~~--~~~P~~P~~~~  116 (122)
T 2e3v_A          103 TQP--VREPSAPKLEG  116 (122)
T ss_dssp             CCC--CCCCC------
T ss_pred             ccC--CCCCCCCeecc
Confidence            332  34667776554

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.34  E-value=3.1e-13  Score=142.92  Aligned_cols=175  Identities=10%  Similarity=0.095  Sum_probs=97.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--EEe---e---------cCCcEEEEecCCeeEEEEeecCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--FEI---F---------SSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~~~---~---------~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      .+.+...|..+.+..|++++|.|.+.+.|.+.+.|++++  ...   .         ...++.....++..+|.|.++..
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            344555677888999999999999999888899999843  111   0         01223222233345899999999


Q ss_pred             CCCEEEEEEEEeCCCceEE-EEEEeecc---CCccccCCCCCCCeEEeeCCEEEEEEEEeecC-CC-eeEEEECCeecCC
Q psy8139         518 MDEGEIKCTATNRAGHSIT-KARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PP-TARWLHNGEPLTS  591 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~~-s~~l~V~~---~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~-~v~W~~~g~~l~~  591 (1101)
                      .|+|.|.|.+.|..+.... ...|.|..   +|.+...+..   ..+..|+.++|.|.+.|.+ .+ .+.|+++|..+..
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~---~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS---SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC---HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC---HHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            9999999999987654322 23455554   3433321110   0122588999999999854 43 7999999987764


Q ss_pred             CCceE--EEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         592 GGRYE--ITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       592 ~~~~~--~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +....  .....     ....|.|......|.|.|+|.|.|....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            41111  11111     1346888888888999999999997654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=131.71  Aligned_cols=140  Identities=21%  Similarity=0.274  Sum_probs=103.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeee-ecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~-~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ..+|.|.+++..|.|.|+|.|.|..|...     ..+.+.+...+..+|.+. ..+....+..|+.++|.|.+.+.|.+.
T Consensus        71 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~  145 (241)
T 3grw_A           71 QWSLVMESVVPSDRGNYTCVVENKFGSIR-----QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH  145 (241)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCE
T ss_pred             ceEEEEEeCCcccCEEEEEEEeecCCceE-----EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCE
Confidence            45799999999999999999999877542     235555554444445544 346777889999999999999999999


Q ss_pred             EEEEE----CCEEeecCCcEEEE--------ecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccc
Q psy8139         484 VSWYK----DGFEIFSSRRQRIV--------TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR  549 (1101)
Q Consensus       484 v~W~~----~g~~~~~~~~~~~~--------~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~  549 (1101)
                      +.|++    ++..+.........        .......|.|.++...|.|.|+|.|.|..|....++.|.|..+|...
T Consensus       146 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             EEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCC
Confidence            99999    77666543321111        01134589999999999999999999999999999999999887654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.34  E-value=2.1e-11  Score=123.06  Aligned_cols=120  Identities=18%  Similarity=0.259  Sum_probs=97.2

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-eE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v  484 (1101)
                      ..|.|.+++..|.|.|+|.|.|..|...    +..+.+.+.    .+|.+...+....+..|+.+.|.|.+.|.|.| .+
T Consensus        60 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v  131 (182)
T 1rhf_A           60 GFLSLKSVERSDAGRYWCQVEDGGETEI----SQPVWLTVE----GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI  131 (182)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEE----CCCEEEEEE----CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEE
T ss_pred             EEEEEeecCcccCeEEEEEEEcCCCcEE----EEEEEEEEe----cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEE
Confidence            6799999999999999999999755422    233555554    57888888888899999999999999999999 99


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEee
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRL  542 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V  542 (1101)
                      .|++++..+.....       ....|.|.++  .|+|.|+|.|.|..|...+ ++.|.|
T Consensus       132 ~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          132 VWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            99999988754321       3458999988  5899999999999998754 566655

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=3.7e-12  Score=118.72  Aligned_cols=83  Identities=24%  Similarity=0.402  Sum_probs=71.7

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      .++.+++.|+|++|..++|.+|.+|.|+|+..+. ..|..+..  ...++++|.+|.|++.|.|+|+|.|..|.|++|..
T Consensus        29 ~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~  106 (120)
T 2crm_A           29 KIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES  106 (120)
T ss_dssp             EEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCC
T ss_pred             ccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEe--ccccEEEECCCCCCCEEEEEEEEEcCCccCCCccc
Confidence            4678899999999988878899999999998876 58887755  56889999999999999999999999999998876


Q ss_pred             CCcEEe
Q psy8139         777 SEPLTV  782 (1101)
Q Consensus       777 s~~~t~  782 (1101)
                      ..+.|.
T Consensus       107 ~~~~T~  112 (120)
T 2crm_A          107 LLVQTP  112 (120)
T ss_dssp             CCCCCC
T ss_pred             EEEEcC
Confidence            655543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.33  E-value=1.4e-11  Score=131.10  Aligned_cols=176  Identities=18%  Similarity=0.185  Sum_probs=115.7

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE--------------CCEEeecC----CcEEEEec-CCeeEEEEe
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--------------DGFEIFSS----RRQRIVTD-NDISTLIIH  513 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--------------~g~~~~~~----~~~~~~~~-~~~~~l~I~  513 (1101)
                      +.+...|..+.+..|++++|.| ..+.+.+.+.|++              ++......    .++.+... .+..+|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3455667788999999999999 6778888999998              22222111    55555542 345689999


Q ss_pred             ecCCCCCEEEEEEEEeCC----CceEEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeE
Q psy8139         514 QAALMDEGEIKCTATNRA----GHSITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TAR  581 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~----g~~~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~  581 (1101)
                      ++...|+|.|.|.+.+..    +.......|.|..      +|.+....  +....+..|..+.|.|.+.|. |.+ .+.
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~--~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  159 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELS  159 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeC--CCcccccCCCceEEEEEEeeEeCCCeEEE
Confidence            999999999999999632    2222335666653      33222110  011123358999999999984 444 899


Q ss_pred             EEECCeecCCCCceEEEe-------ecc----eEEEEEccCCCCC-CeEEEEEEEeCCCCce
Q psy8139         582 WLHNGEPLTSGGRYEITH-------TDR----YLNLRISDARRAD-RGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       582 W~~~g~~l~~~~~~~~~~-------~~~----~~sl~i~~l~~~~-~y~y~c~A~N~~G~~~  631 (1101)
                      |+++|..+..+.......       .++    ...|.|......| .|.|+|.|.|......
T Consensus       160 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            999998886532211000       011    2347777777667 8999999999765543

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=3.6e-12  Score=116.41  Aligned_cols=93  Identities=22%  Similarity=0.255  Sum_probs=75.0

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      +.+|+.|........++.++++|+|++|..++ ++|.+|.|+|+..+...|..+..  +..++++|.+|.|++.|.|||.
T Consensus         7 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~   83 (110)
T 2db8_A            7 GPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVK   83 (110)
T ss_dssp             CCCCCCCBCCCCCCSCSSSEEEECCBCCTTCC-SCCSEEEEEECCSSSSCCEEEEE--ESCSCEEEECCCSSSCCEEEEE
T ss_pred             CCCCCCccccceeeccCCCEEEEEECCCCCCC-CCccEEEEEEEeCCCCceEEEEe--CCcCEEEECCCCCCCEEEEEEE
Confidence            34566665555455678999999999987554 78999999999877678877654  5778999999999999999999


Q ss_pred             EEcCCccCCCCCCCCc
Q psy8139         764 AENVVGFSEPGPLSEP  779 (1101)
Q Consensus       764 A~n~~G~g~~S~~s~~  779 (1101)
                      |.|..|.|++|+...+
T Consensus        84 A~n~~G~s~~S~~~~~   99 (110)
T 2db8_A           84 AFNKTGVSPYSKTLVL   99 (110)
T ss_dssp             EECSSCBCCCCSCEEC
T ss_pred             EEeCCcCCCCCCCEEE
Confidence            9999999888765433

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.33  E-value=2.9e-12  Score=133.79  Aligned_cols=177  Identities=17%  Similarity=0.242  Sum_probs=111.3

Q ss_pred             CCCeeeecCceeE--EccCCeEEEEEEEecc---CC-CeEEEEECCEEeecCCcEEEE-ecC----CeeEEEEeecCCCC
Q psy8139         451 AAPSFIRALHDTT--ALEDEKVEFTVQVEGI---PT-PKVSWYKDGFEIFSSRRQRIV-TDN----DISTLIIHQAALMD  519 (1101)
Q Consensus       451 ~~P~~~~~p~~~~--v~~g~~v~L~C~~~g~---p~-~~v~W~~~g~~~~~~~~~~~~-~~~----~~~~l~I~~l~~~d  519 (1101)
                      .+|.+...|....  +..|++++|.|.+.|.   |. +.|+|++++..+......... ..+    ..+.|.|.++...|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            4555554444444  7899999999999887   33 789999999776432111000 011    12479999999999


Q ss_pred             CEEEEEEEEeCCCceEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEECCeecCCCC
Q psy8139         520 EGEIKCTATNRAGHSITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHNGEPLTSGG  593 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g~~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~g~~l~~~~  593 (1101)
                      +|.|+|.|.|..+.......+    .+..+|.+...+....   ...|..+.|.|.+.| .|.+ .|+|+++|..+....
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~---~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE---QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG---GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH---HhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            999999999987754222222    3445665533222111   124889999999998 5655 999999998874321


Q ss_pred             ceEEE-eecc----eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         594 RYEIT-HTDR----YLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       594 ~~~~~-~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ..... ..++    ...+.|......+.|.|+|.|.|.....
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence            11111 1111    1234444444445899999999986543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.33  E-value=6.7e-12  Score=127.86  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=101.0

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.+++..|.|.|+|.|.|..|..    .+..+.+.+.    .+|.+...|....+..|+++.|.|.+.|.|.+.
T Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~  131 (191)
T 1epf_A           60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQ----SEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT  131 (191)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTTEE----EEEEEEEEEE----CCSEEEECCSSEECCTTSCEEECCEEECSSCCE
T ss_pred             CceEEEEccCCcccCEEEEEEEEcCCCcc----eEEEEEEEee----cCceEecCCCcEeecCCCeEEEEEEECCCCCCE
Confidence            34689999999999999999999987532    1234455543    678888888888999999999999999999999


Q ss_pred             EEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         484 VSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       484 v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|++++..+...  .++..... +  .|.|.++...|+|.|+|.|.|..|.......+.|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          132 IIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEETTEEGGGGCCTTEEECTT-S--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEECCEEeeccCCceEEEecC-C--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            9999999988643  23333322 2  7999999999999999999998876655544443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.33  E-value=1.1e-11  Score=135.65  Aligned_cols=167  Identities=11%  Similarity=0.121  Sum_probs=117.2

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Eee--------------cCCcEEEEe--cCCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EIF--------------SSRRQRIVT--DNDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~~--------------~~~~~~~~~--~~~~~~l~I~~  514 (1101)
                      .|..+.+.+|++++|.|.+.+.|  .+.+.|++..  .   .+.              ...++.+..  .++..+|+|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            45577899999999999998876  5789999842  1   110              113444433  23456899999


Q ss_pred             cCCCCCEEEEEEEEeCC-Cce----EEEEEEeeccC----------------CccccCCCCCCCeEEeeCCEEEEEEEEe
Q psy8139         515 AALMDEGEIKCTATNRA-GHS----ITKARLRLEAP----------------PTIRLPKQYEDGLLFEMGEIIKLKVSMA  573 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~-g~~----~~s~~l~V~~~----------------p~~~~~~~~~~~~~v~~g~~~~l~c~~~  573 (1101)
                      +..+|+|.|.|.+.|.. |..    ...+.|.|..+                +.+..   .+..+.+.+|++++|.|.+.
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~---~p~~~~v~~G~~v~L~C~~~  184 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQ---SPSSLAVSAGEKVTMSCKSS  184 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEEC---SCSEEEEETTSCEEEEEEES
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEc---CCCEEEEcCCCcEEEEEEcC
Confidence            99999999999999874 211    12346777651                11211   12345788999999999999


Q ss_pred             ecCCC------eeEEEECC--eecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         574 GMPPP------TARWLHNG--EPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       574 g~p~~------~v~W~~~g--~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      +.+.+      .+.|+++.  ....            ...++.....+...+|.|.++...|+|.|.|.|.|..
T Consensus       185 ~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          185 QSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            88765      89999852  2110            1345555545556789999999999999999999854

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.33  E-value=1.8e-12  Score=119.12  Aligned_cols=94  Identities=23%  Similarity=0.407  Sum_probs=71.8

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeC-CCCCceeecccc-----------cCccEEEEcCC
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPYWVRASPHM-----------VEDTELMVSGL  752 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~-~~~~~~~~~~~~-----------~~~~~~~i~~L  752 (1101)
                      .+|++|.    ...++.++++|+|.+|..++ .+|++|.|+|+.. .+..|..+....           +..++++|.+|
T Consensus         4 ~pP~~P~----v~~~~~~sv~L~W~~P~~~G-~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L   78 (115)
T 2ic2_A            4 YPPTPPN----VTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL   78 (115)
T ss_dssp             CCCCCCE----EEECC---EEEEEEEECCSS-CCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSC
T ss_pred             CCCCcCE----eEEEeCCEEEEEEcCCCCCC-CCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCC
Confidence            3566665    33678999999999997665 8899999999987 456888654321           33468899999


Q ss_pred             CCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         753 EPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       753 ~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      .|++.|.|||.|.|.+|.|.+|..+..+.+.
T Consensus        79 ~p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~  109 (115)
T 2ic2_A           79 KPQHTYRFRILAVYSNNDNKESNTSAKFYLQ  109 (115)
T ss_dssp             CSSEEEEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred             CCCCEEEEEEEEEeCCCCCCCCCCCCCEEeC
Confidence            9999999999999999999999988887764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.33  E-value=6.2e-12  Score=130.46  Aligned_cols=136  Identities=19%  Similarity=0.252  Sum_probs=99.3

Q ss_pred             eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCeEE
Q psy8139         407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVS  485 (1101)
Q Consensus       407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~v~  485 (1101)
                      .+.|.+++..|.|.|+|.|.|..|....    ..+.+.+..   .+|.+...+....+..|+.++|.|.+ .+.|.+.+.
T Consensus        73 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~----~~~~l~V~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~  145 (212)
T 2v9r_A           73 RIVHGRKSRPDEGVYVCVARNYLGEAVS----HDASLEVAI---LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTIS  145 (212)
T ss_dssp             SCCCCSSCCCSCEEEEEEEEETTEEEEC----CCEEEEECE---ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEE
T ss_pred             EEEecCCCcccCeEEEEEEECCCCceee----cceEEEEEe---ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEE
Confidence            3455677999999999999998775421    224444432   23445566777889999999999998 899999999


Q ss_pred             EEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE-EEEeeccCCccccCC
Q psy8139         486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPK  552 (1101)
Q Consensus       486 W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s-~~l~V~~~p~~~~~~  552 (1101)
                      |++++..+...........+   .|.|.++...|.|.|+|.|.|..|...+. +.|.|..+|.+...|
T Consensus       146 W~~~~~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          146 WKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EEETTEEECTTSTTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             EEECCccCCCCcceEEccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            99999988765433333332   89999999999999999999999987654 889999888775443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.32  E-value=1e-11  Score=130.41  Aligned_cols=166  Identities=10%  Similarity=0.092  Sum_probs=112.2

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E-E--ee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F-E--IF--------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~-~--~~--------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+..|++++|.|.+.+.|  .+.+.|++..  . .  +.              ...++.+..+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456789999999999999876  6789999842  1 1  10              1245555543  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCC-----c---eEEEEEEeecc----CCcccc-CCCCCCCeEEeeCCEEEEEEEEeec-CCC-ee
Q psy8139         516 ALMDEGEIKCTATNRAG-----H---SITKARLRLEA----PPTIRL-PKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TA  580 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g-----~---~~~s~~l~V~~----~p~~~~-~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v  580 (1101)
                      ...|+|.|.|.+.|..|     .   ....+.|.|..    +|.+.. ++..    .+..|+.+.|.|.+.|. |.+ .+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~----~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS----KSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT----TCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc----cccCCCcEEEEEEEEeEECCCeEE
Confidence            99999999999999865     2   11235777765    233221 2111    13569999999999986 766 99


Q ss_pred             EEEECCeecCCCCc-eEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         581 RWLHNGEPLTSGGR-YEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       581 ~W~~~g~~l~~~~~-~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .|++++..+..... ......+   ..+.|.|......+ |.|+|.|.|..+.
T Consensus       163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            99998865421100 0011111   13468898888778 9999999997654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.32  E-value=2.6e-11  Score=124.21  Aligned_cols=124  Identities=13%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..|.+..   +..+.+.+... ..+|.+...| ...+.+|++++|.|.+.+.| +.
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---s~~~~l~V~~~-~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~  129 (196)
T 2d3v_A           56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEP---SDPLELVVTGF-YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DR  129 (196)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEECBC---CCCEEEEEECS-SCCCEEEC------------CEEEEEESSCC-SE
T ss_pred             cccEEEeccCChhHCeEEEEEEeCCCCcCCc---CccEEEEecCC-CCCCeEEccC-CccccCCCcEEEEEEcCCCC-CE
Confidence            4568999999999999999999998764432   34455655432 2356665544 35788999999999999998 89


Q ss_pred             EEEEECCEEeecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         484 VSWYKDGFEIFSSRRQRIVT--DNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      +.|+++|..+..........  ......|.|.++...|+|.|+|.|.|..+.
T Consensus       130 ~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          130 FILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             EEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence            99999998764321111111  123468999999999999999999997653

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.32  E-value=2.5e-12  Score=120.53  Aligned_cols=96  Identities=26%  Similarity=0.371  Sum_probs=70.9

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ++|++|.++.+..++.+++.|+|.+|.                                               +++++|
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~p~~-----------------------------------------------~~~~~i   48 (124)
T 1wis_A           16 ELPGPPTNLGISNIGPRSVTLQFRPGY-----------------------------------------------DGKTSI   48 (124)
T ss_dssp             CCCCCCEEEEEESCCSSCEEEEEECCC-----------------------------------------------CCSSCC
T ss_pred             CCCccCCCCEEEEecCCEEEEEEECCC-----------------------------------------------CCCCcc
Confidence            466777777776666667777775442                                               344567


Q ss_pred             ceEEEEEEe---CCCCCceeeccc--ccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         720 LGYLVEHRR---TGSPYWVRASPH--MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       720 ~~Y~V~~~~---~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      ++|.|+|+.   .+...|..+...  ....+.++|.+|.|++.|.|+|.|.|..|.|++|..+..+++
T Consensus        49 ~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T  116 (124)
T 1wis_A           49 SRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT  116 (124)
T ss_dssp             SEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred             cEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEc
Confidence            778787776   345577765432  356789999999999999999999999999999987765544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.32  E-value=1.3e-11  Score=129.84  Aligned_cols=170  Identities=15%  Similarity=0.183  Sum_probs=112.9

Q ss_pred             CceeEEccCCeEEEEEEEeccCC----CeEEEEEC--CEE---ee-------------cCCcEEEEec--CCeeEEEEee
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPT----PKVSWYKD--GFE---IF-------------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~----~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      |..+.+..|++++|.|.+.+.|.    +.+.|++.  +..   +.             ...++.+...  .+..+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55678999999999999998775    78999874  221   11             1235555432  3456899999


Q ss_pred             cCCCCCEEEEEEEEeCCC------c--e-EEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-e
Q psy8139         515 AALMDEGEIKCTATNRAG------H--S-ITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-T  579 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g------~--~-~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~  579 (1101)
                      +...|+|.|.|.+.|..|      .  . ...+.|.|..    +|.+...+.   ...+..|+.+.|.|.+.|. |.+ .
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~---~~~~~~g~~~~l~C~~~g~~P~p~~  163 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAP---VCGDTTGSSVTLGCLVKGYFPEPVT  163 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC--------CCSEEEEEEEEEEEBSSCCE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecc---cccccCCCCEEEEEEEccEeCCCEE
Confidence            999999999999999765      1  1 1236777763    333321111   1134679999999999986 766 9


Q ss_pred             eEEEECCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         580 ARWLHNGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       580 v~W~~~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      +.|++++..+.......+...+   ..+.|.|......+ |.|+|.|.|..|....
T Consensus       164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence            9999988654211111111111   14568888887755 9999999999887543

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.32  E-value=1.7e-12  Score=116.78  Aligned_cols=95  Identities=28%  Similarity=0.397  Sum_probs=74.3

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc-cccCccEEEEcCCCCCceEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-HMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      +++|++|..+...  ...++++|+|+||.. ++++|++|.|+|+. ++..|..+.. .....+++++.+|.|++.|.|||
T Consensus         5 pep~~pP~~l~v~--~~~~sv~L~W~pP~~-~~~~I~gY~vey~~-~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV   80 (108)
T 1v5j_A            5 SSGLSPPRGLVAV--RTPRGVLLHWDPPEL-VPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRL   80 (108)
T ss_dssp             CCCCCCCEEEEEE--ECSSSEEEEEECCSC-CSSCCCBEEEEEEE-TTCCCEEEEEEECSSCCEEECCCCCTTSCEECCB
T ss_pred             CCCCCCCcceEEE--EeCCEEEEEECCCCC-CCCCCcEEEEEEEe-CCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEE
Confidence            3455566544322  245789999999974 77899999999998 5567986543 23678999999999999999999


Q ss_pred             EEEcCCccCCCCCCCCcEEe
Q psy8139         763 TAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      .|+|..|.|+||+...+.|.
T Consensus        81 ~A~n~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           81 VAFAGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             EEEETTEEEEECSCCCCCCS
T ss_pred             EEEcCCCCcCCCCCEEEEeC
Confidence            99999999999876666554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.32  E-value=4e-12  Score=132.04  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~  482 (1101)
                      ...+|.|.+++..|+|.|+|.|.|..|...     ..+.+.+.    .+|.+...+....+..|+.++|.|.+ .|.|.+
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~l~V~----~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~  152 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVAN-----KKFLLTVL----VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPL  152 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEE----CCCBSCEEEEESCCBTTCCEEEEEECSBCCSSC
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccc-----cEEEEEEE----cCCCCceeeeecceecCCcEEEEecCCCCCCCC
Confidence            356799999999999999999999877442     33455554    34444444444557899999999999 899999


Q ss_pred             eEEEEECC--EEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCC
Q psy8139         483 KVSWYKDG--FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       483 ~v~W~~~g--~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      .+.|++++  ..+.....  .  ......|.|.++...|+|.|+|.|.|..|....++.|.|..||
T Consensus       153 ~v~W~~~~~~~~~~~~~~--~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          153 QFEWQKLSDSQTMPTPWL--A--EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             EEEEEECSTTCCCCGGGG--G--GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             EEEEEECCCCCccCccce--e--ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence            99999954  33322111  0  1122389999999999999999999999999888999887543

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.32  E-value=1.6e-11  Score=114.55  Aligned_cols=97  Identities=29%  Similarity=0.524  Sum_probs=75.3

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|.+|.++.+..++.+++.|+|.++                                               .+++.+|
T Consensus        16 ~~P~~P~~~~~~~~~~~sv~l~W~p~-----------------------------------------------~~~~~~i   48 (121)
T 1x4z_A           16 SPPEAPDRPTISTASETSVYVTWIPR-----------------------------------------------GNGGFPI   48 (121)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCC-----------------------------------------------CCTTSCC
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECC-----------------------------------------------CCCCCcc
Confidence            56777777777776777777777632                                               2345568


Q ss_pred             ceEEEEEEeCC-CCCceeeccc-ccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         720 LGYLVEHRRTG-SPYWVRASPH-MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       720 ~~Y~V~~~~~~-~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      ++|.|+|+..+ ...|..+... ....+.++|.+|.|++.|.|+|+|.|..|.|++|..+..+++.
T Consensus        49 ~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~  114 (121)
T 1x4z_A           49 QSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS  114 (121)
T ss_dssp             CEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCCCCEECC
T ss_pred             eEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEEEEEEEEcCCCcCCCcCCCCCEEcC
Confidence            88888888876 5678766432 3577899999999999999999999999999999988777654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.32  E-value=4.8e-12  Score=130.88  Aligned_cols=170  Identities=16%  Similarity=0.219  Sum_probs=109.4

Q ss_pred             ecCceeE-EccCCeEEEEEEEeccC----CCeEEEEECCEEeecCCc-EEEEecC----CeeEEEEeecCCCCCEEEEEE
Q psy8139         457 RALHDTT-ALEDEKVEFTVQVEGIP----TPKVSWYKDGFEIFSSRR-QRIVTDN----DISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       457 ~~p~~~~-v~~g~~v~L~C~~~g~p----~~~v~W~~~g~~~~~~~~-~~~~~~~----~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      ..|.... +..|++++|.|.+.|.|    .+.|.|++++..+..... ......+    ..+.|.|.++...|+|.|+|.
T Consensus         7 ~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   86 (207)
T 2vol_A            7 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR   86 (207)
T ss_dssp             ECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             eCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEE
Confidence            3444334 78999999999999874    248999999976542110 0000011    124799999999999999999


Q ss_pred             EEeCCCceEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCCCCceEEE-e
Q psy8139         527 ATNRAGHSITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRYEIT-H  599 (1101)
Q Consensus       527 a~n~~g~~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~~~~-~  599 (1101)
                      |.|..|.......+    .+..+|.+...+....   ...|+.+.|.|.+.|. |. +.+.|+++|..+......... .
T Consensus        87 a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~---~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  163 (207)
T 2vol_A           87 VNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE---QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMD  163 (207)
T ss_dssp             EECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG---GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEEC
T ss_pred             EEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH---HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceEC
Confidence            99988864332233    4455666543322211   1248899999999984 54 499999999987542211111 1


Q ss_pred             ecc----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         600 TDR----YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       600 ~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .++    .+.|.|......+.|.|+|.|.|....
T Consensus       164 ~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          164 TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             TTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             CCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            111    223555555556789999999998654

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.31  E-value=2.8e-12  Score=116.16  Aligned_cols=95  Identities=26%  Similarity=0.450  Sum_probs=72.9

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceee---cccccCccEEEEcCCCCCceEEEE
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA---SPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~---~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                      ++|++|..+ .....+.+ +.|+|++|..++|.+|.+|.|+|+..+...|...   .......++++|.+|.|++.|.|+
T Consensus         5 ~~P~~P~~~-~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   82 (105)
T 2haz_A            5 DTPSSPSID-QVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   82 (105)
T ss_dssp             CCCCCCEEE-EEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             CCCcCCCCC-EEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEE
Confidence            455554332 22345556 9999999988888889999999999887777421   111135689999999999999999


Q ss_pred             EEEEcCCccCCCCCCCCcEE
Q psy8139         762 ITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       762 V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      |.|.|..|.|++|....+.|
T Consensus        83 V~A~n~~G~g~~S~~~~~~T  102 (105)
T 2haz_A           83 LAALNGKGLGEISAASEFKT  102 (105)
T ss_dssp             EEEEETTEECCCCCCEEEEC
T ss_pred             EEEEcCCccCCCcCCEeeEE
Confidence            99999999999987766554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.31  E-value=5.7e-11  Score=120.14  Aligned_cols=124  Identities=18%  Similarity=0.257  Sum_probs=99.9

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC-CCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP-TPKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v  484 (1101)
                      ..|.|.  ...|.|.|+|.|.|..        +..+.+.+.    .+|.+...+....+..|++++|.|.+.|.| .+.+
T Consensus        51 ~~l~i~--~~~d~G~Y~C~~~n~~--------~~~~~l~V~----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i  116 (184)
T 3b5h_A           51 TEFKVD--SDDQWGEYSCVFLPEP--------MGTANIQLH----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDW  116 (184)
T ss_dssp             EEEEEC--GGGCCEEEEEEEESTT--------SCEEEEEEC----CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEE
T ss_pred             EEEEEe--chhhCeEEEEEEECCc--------CcEEEEEEe----cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeE
Confidence            456666  6899999999999821        133455553    567777778888899999999999999999 7999


Q ss_pred             EEEE---CCE-Eeec--CCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         485 SWYK---DGF-EIFS--SRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       485 ~W~~---~g~-~~~~--~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      .|++   ++. .+..  ..++.+...++.+.|.|.++. ..|.|.|+|.|.|..|.....+.|.|.
T Consensus       117 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            9999   444 4432  256777777777899999999 999999999999999998888888775

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.31  E-value=1.7e-11  Score=127.93  Aligned_cols=132  Identities=11%  Similarity=0.170  Sum_probs=102.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC-----------CCCCCeeeecCceeEEccCCeEEE
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS-----------PAAAPSFIRALHDTTALEDEKVEF  472 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~-----------~~~~P~~~~~p~~~~v~~g~~v~L  472 (1101)
                      ....|.|.+++..|.|.|+|.|.|..|...    +..+.+.+...           +..+|.+...|....+..|+.++|
T Consensus        63 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~----s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L  138 (218)
T 3k0w_A           63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEF----SQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVL  138 (218)
T ss_dssp             CSSEEEETTCCGGGCEEEEEEEECTTCCEE----CCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEE
T ss_pred             CCCEEEEccCChhhCeEeEEEEEcCCCCce----eeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEE
Confidence            346899999999999999999999876432    23345554432           123477888888899999999999


Q ss_pred             EEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-EEEEEEeeccCCcc
Q psy8139         473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-ITKARLRLEAPPTI  548 (1101)
Q Consensus       473 ~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V~~~p~~  548 (1101)
                      .|.+.|.|.+.+.|++++..+....         ...|.|.++...|+|.|+|.|.|..|.. +..+.|.|...+.+
T Consensus       139 ~C~~~g~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          139 QCVAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL  206 (218)
T ss_dssp             ECEEEBSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred             EEEecccCCCeEEEEECCEECCCCC---------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence            9999999999999999998876432         2389999999999999999999988874 34567777664433

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.31  E-value=4.2e-11  Score=122.58  Aligned_cols=123  Identities=11%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..|.+..   +..+.+.+... ..+|.+...|.. .+..|++++|.|.+.+. .+.
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---s~~~~l~V~~~-~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~  129 (196)
T 3p2t_A           56 NKARFSIPSMTEDYAGRYRCYYRSPVGWSQP---SDPLELVMTGA-YSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDT  129 (196)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEETTEEBCC---CCCEEEEEECS-SCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEE
T ss_pred             ceEEEEeccCCcccCceEEEEEeCCCcccCC---CccEEEEecCC-CCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCE
Confidence            4578999999999999999999998873322   34566665432 346666666554 67899999999999885 458


Q ss_pred             EEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         484 VSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      +.|+++|..+...... ..........|.|.++...|+|.|+|.|.|..+
T Consensus       130 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          130 FLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            9999999766443221 111222345899999999999999999999876

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.31  E-value=6.5e-12  Score=114.04  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=70.3

Q ss_pred             CCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEE
Q psy8139         686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  765 (1101)
Q Consensus       686 ~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  765 (1101)
                      +|++|......  .+.+++.|+|.++ .+||.+|++|.|+|+..++..|......++..++++|.+|.|++.|+|+|.|.
T Consensus         8 ~P~pP~~~~~~--~~~~sv~L~W~p~-~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~   84 (114)
T 2kbg_A            8 EPSPPSIHGQP--SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA   84 (114)
T ss_dssp             CCCSCCEECCB--CSTTCEEEEECCC-CCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred             CccCCcccccc--cCCCEEEEEEECC-CCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence            45555433222  6899999999965 68999999999999998777776554444677899999999999999999999


Q ss_pred             cCCccCCCCC
Q psy8139         766 NVVGFSEPGP  775 (1101)
Q Consensus       766 n~~G~g~~S~  775 (1101)
                      |..|.|.+|.
T Consensus        85 N~~G~s~pS~   94 (114)
T 2kbg_A           85 NRLGYSEPTV   94 (114)
T ss_dssp             CTTSCEEEEE
T ss_pred             eCCcCcCCcC
Confidence            9999988764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.31  E-value=4.7e-12  Score=131.31  Aligned_cols=180  Identities=16%  Similarity=0.218  Sum_probs=115.0

Q ss_pred             CCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEec
Q psy8139         349 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV  428 (1101)
Q Consensus       349 ~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~  428 (1101)
                      +....|.|. ..+.....+.|...    +..+..|..........   ...........|.|.+++..|.|.|+|.|.|.
T Consensus        16 G~~v~L~C~-~~~~p~~~v~W~~~----~~~~~~~~~~~~~~~~~---~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~   87 (212)
T 1f97_A           16 NESIKLTCT-YSGFSSPRVEWKFV----QGSTTALVCYNSQITAP---YADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (212)
T ss_dssp             TCCEEEECE-EESCSSEEEEEEEE----ETTEEEEEEETTEECGG---GTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEeE-eCCCCCcEEEEEEC----CCceeeEEecCCccccc---ccCcEEeeceeEEEcccCcccCeEEEEEEEcc
Confidence            455566665 33445667888764    22343333221110000   00001122378999999999999999999998


Q ss_pred             CCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEE-EeccCCCeEEEEECCE-EeecCCcE-------
Q psy8139         429 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-VEGIPTPKVSWYKDGF-EIFSSRRQ-------  499 (1101)
Q Consensus       429 ~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~g~-~~~~~~~~-------  499 (1101)
                      .|...   .+..+.+.+.    .+|.+...+....+..|++++|.|. +.+.|.+.+.|++++. .+......       
T Consensus        88 ~g~~~---~~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~  160 (212)
T 1f97_A           88 GGQNY---GEVSIHLTVL----VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS  160 (212)
T ss_dssp             TSSSE---EEEEEEEEEE----BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSS
T ss_pred             CCCcc---cEEEEEEEEE----cCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCc
Confidence            77221   1233445544    3444444445567889999999999 7999999999999998 66543221       


Q ss_pred             EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE--EEEEeec
Q psy8139         500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLE  543 (1101)
Q Consensus       500 ~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~--s~~l~V~  543 (1101)
                      ..........|.|.++...|+|.|+|.|.|..|....  ...|.|.
T Consensus       161 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          161 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             CEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             eeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            1122233458999999999999999999999998833  4555554

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.31  E-value=2.8e-11  Score=124.45  Aligned_cols=142  Identities=15%  Similarity=0.137  Sum_probs=98.7

Q ss_pred             EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe-cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccc
Q psy8139         596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT-DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIG  674 (1101)
Q Consensus       596 ~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~-~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~  674 (1101)
                      .+...+....+.|.+|.+++.|.|++.|.|..|.+..+ .+.+. ..+.+|.....                        
T Consensus        48 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~~~~-~~~~~t~~~~~~~~~~~------------------------  102 (201)
T 2ha1_A           48 EATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT-RFDFTTTSTSTPVTSNT------------------------  102 (201)
T ss_dssp             EEEECTTCCEEEECSCCTTEEEEEEEEEECTTSCEEEE-EEEEEECCCCCTTCSCC------------------------
T ss_pred             EEecCCCccEEEecCCCCCCEEEEEEEEEecccccCce-eEEEecCCCCCCccccc------------------------
Confidence            33344556789999999999999999999999987654 33333 22233321100                        


Q ss_pred             eeEEEEEcCCCCCCC-Ccc---cCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEc
Q psy8139         675 NYIVEYFRPPGPPGK-PQL---LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS  750 (1101)
Q Consensus       675 ~Y~v~~~~~~~~p~~-p~~---~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~  750 (1101)
                              ..+.|.+ |+.   ......++.+++.|+|.+|.    ++|.+|.|.|+..+...|........+.++++|.
T Consensus       103 --------~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~v~~~~~~~~i~  170 (201)
T 2ha1_A          103 --------VTGETTPFSPLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIP  170 (201)
T ss_dssp             --------CCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCSC----TTEEEEEEEEEETTTCCCCEEEEEETTCCEEEEC
T ss_pred             --------ccCCCCCCCCccCCceEEEecCCCeEEEEEeCCC----CCccEEEEEEEECCCCCceeEEEcCCceeEEEeC
Confidence                    0011111 111   22344678899999999882    4799999999986554554433334677999999


Q ss_pred             CCCCCceEEEEEEEEcCCccCCCC
Q psy8139         751 GLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       751 ~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +|.|++.|.|+|.|.|..|.|.+.
T Consensus       171 ~L~p~t~Y~~~V~A~~~~G~~~~~  194 (201)
T 2ha1_A          171 DLLPGRKYIVNVYQISEDGEQSLI  194 (201)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             CCCCCCEEEEEEEEEcCCCCcccE
Confidence            999999999999999999997653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.31  E-value=1.6e-11  Score=132.73  Aligned_cols=176  Identities=17%  Similarity=0.191  Sum_probs=114.8

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE--CCE------------EeecC----CcEEEEe-cCCeeEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGF------------EIFSS----RRQRIVT-DNDISTLII  512 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~------------~~~~~----~~~~~~~-~~~~~~l~I  512 (1101)
                      .+.+...|..+.+..|++++|.|.+. .+.+.+.|++  .+.            .....    .++.+.. ..+..+|.|
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI  104 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence            34456667788999999999999987 5778999998  221            11111    4555554 234568999


Q ss_pred             eecCCCCCEEEEEEEEeC--CCceEEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC--eeEE
Q psy8139         513 HQAALMDEGEIKCTATNR--AGHSITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARW  582 (1101)
Q Consensus       513 ~~l~~~d~g~Y~C~a~n~--~g~~~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~--~v~W  582 (1101)
                      .+++..|+|.|.|.+.|.  .+.......|.|..      +|.+...+  +....+..|..++|.|.+.|.+++  .+.|
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~--~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeC--CCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            999999999999999984  22233345666665      23221110  011123358999999999986554  8999


Q ss_pred             EECCeecCCCCceEEE--------eec---ceEEEEEccCCCCC-CeEEEEEEEeCCCCc
Q psy8139         583 LHNGEPLTSGGRYEIT--------HTD---RYLNLRISDARRAD-RGEYQAHGVNSLGED  630 (1101)
Q Consensus       583 ~~~g~~l~~~~~~~~~--------~~~---~~~sl~i~~l~~~~-~y~y~c~A~N~~G~~  630 (1101)
                      +++|..+..+......        ..+   ..+.+.|......| .|.|+|.|.|.....
T Consensus       183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            9999887643211100        000   02456777766666 999999999986654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=126.30  Aligned_cols=134  Identities=20%  Similarity=0.247  Sum_probs=103.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc---CCCCCCeeeecCceeEEccCCeEEEEEEEeccC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR---SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP  480 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~---~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p  480 (1101)
                      .+.+|.|.+++..|.|.|+|.+.|..+.....  +..+.+.+..   ....+|.+...+....+..|+.++|.|.+.|.|
T Consensus        64 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p  141 (201)
T 3s97_C           64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVF--SKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP  141 (201)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE--CCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEES
T ss_pred             CCCeEEECcCCcccCeEEEEEEEecCCCcchh--hcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCC
Confidence            34679999999999999999999977654321  2223333321   122456666666688899999999999999999


Q ss_pred             CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       481 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      .+.+.|++++..+...  ......+  ..|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus       142 ~p~v~W~~~~~~~~~~--~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          142 VPDIRWRKVLEPMPST--AEISTSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCEEEEEETTBCCCTT--CEEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEEEeCCCcCCCc--eeecCCC--CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            9999999999866543  2222233  389999999999999999999999999888888775

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.30  E-value=3.2e-11  Score=127.93  Aligned_cols=174  Identities=17%  Similarity=0.211  Sum_probs=114.6

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEE--------------CCEEeec---CCcEEEEe-cCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--------------DGFEIFS---SRRQRIVT-DNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--------------~g~~~~~---~~~~~~~~-~~~~~~l~I~~l~  516 (1101)
                      +...|..+.+.+|++++|.|.+.+ +.+.+.|++              ++.....   ..++.+.. ..+..+|.|.++.
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            455677889999999999999876 778999998              2221111   24555544 3345689999999


Q ss_pred             CCCCEEEEEEEEeCCC---ceEEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEEC
Q psy8139         517 LMDEGEIKCTATNRAG---HSITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHN  585 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g---~~~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~  585 (1101)
                      ..|+|.|.|.+.+..+   .......|.|..      +|.+...+  +....+..|..+.|.|.+.| .|.+ .+.|+++
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE--PSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEEC--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeC--CchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            9999999999984322   122234566653      23222100  01112335889999999998 5655 7999999


Q ss_pred             CeecCCCCceE---EEeecc----eEEEEEccCCCCC-CeEEEEEEEeCCCCce
Q psy8139         586 GEPLTSGGRYE---ITHTDR----YLNLRISDARRAD-RGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       586 g~~l~~~~~~~---~~~~~~----~~sl~i~~l~~~~-~y~y~c~A~N~~G~~~  631 (1101)
                      |..+..+....   ....++    .+.|.|......| .|.|+|.|.|......
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~  215 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE  215 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence            99886532211   111111    2358888887777 6799999999866543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.30  E-value=6e-11  Score=125.05  Aligned_cols=177  Identities=14%  Similarity=0.109  Sum_probs=112.9

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Eee-------------cCCcEEEEec--CCeeEEEEeecC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EIF-------------SSRRQRIVTD--NDISTLIIHQAA  516 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~~-------------~~~~~~~~~~--~~~~~l~I~~l~  516 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|++..  .   .+.             ...++.+..+  ++..+|+|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            4456789999999999998765  5789999842  1   110             1245665542  345689999999


Q ss_pred             CCCCEEEEEEEEeCC--Cc----eEEEEEEeeccC----Ccccc-CCCCCCCeEEeeC-CEEEEEEEEeec-CCC-eeEE
Q psy8139         517 LMDEGEIKCTATNRA--GH----SITKARLRLEAP----PTIRL-PKQYEDGLLFEMG-EIIKLKVSMAGM-PPP-TARW  582 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~--g~----~~~s~~l~V~~~----p~~~~-~~~~~~~~~v~~g-~~~~l~c~~~g~-p~~-~v~W  582 (1101)
                      .+|+|.|.|.+.+..  +.    ....+.|.|...    |.+.. .+.    ..+..| +.+.|.|.+.+. |.+ .+.|
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~----~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC----ENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC----------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc----cccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            999999999998422  21    112357777652    32221 111    123467 889999999986 765 9999


Q ss_pred             EE-CCeecCCCCce-EEEeec---ceEEEEEccCCC--CCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         583 LH-NGEPLTSGGRY-EITHTD---RYLNLRISDARR--ADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       583 ~~-~g~~l~~~~~~-~~~~~~---~~~sl~i~~l~~--~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      ++ +|..+.....+ .....+   ..+.|.|.....  .+.|.|+|.|.|..|.......+.+.
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            99 88776530000 000011   135678888776  67899999999999876655554443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.29  E-value=1.9e-11  Score=128.60  Aligned_cols=139  Identities=17%  Similarity=0.268  Sum_probs=105.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeee-cCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~-~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ...|.|.+++..|.|.|+|.|.|..|...     ..+.+.+...+..+|.+.. .+....+..|+.+.|.|.+.+.|.+.
T Consensus        75 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~-----~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~  149 (231)
T 3ojm_B           75 HWSLIMESVVPSDKGNYTCVVENEYGSIN-----HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH  149 (231)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCE
T ss_pred             cceEEEecCCcccCEEEEEEEecccCccc-----ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCE
Confidence            35799999999999999999999877542     2345555544444555443 36778899999999999999999999


Q ss_pred             EEEEE----CCEEeecCCc--EEEEe-----cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCcc
Q psy8139         484 VSWYK----DGFEIFSSRR--QRIVT-----DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI  548 (1101)
Q Consensus       484 v~W~~----~g~~~~~~~~--~~~~~-----~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~  548 (1101)
                      +.|++    +|..+.....  .....     ......|.|.++...|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       150 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             EEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             EEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            99999    7766543321  11111     112347999999999999999999999999988999999887754

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.29  E-value=7.5e-12  Score=115.04  Aligned_cols=85  Identities=19%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCCCCCceEEEEeeCCCCCC---CCC-cceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDG---GSP-VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~---~~~-i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      ..+++.++++|+|++|..++   +.+ |++|.|+........|..+..  ...+.++|.+|.|++.|.|||+|.|..|.|
T Consensus        24 v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~--~~~t~~~v~gL~p~t~Y~frV~A~n~~G~s  101 (120)
T 1wfu_A           24 VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEGLEPRTLYKFRLKVTSPSGEY  101 (120)
T ss_dssp             CCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEESCCTTCEEEEEEEEECSSSCE
T ss_pred             eceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEec--CCccEEEECCCCCCCEEEEEEEEECCCCCC
Confidence            44789999999999998776   666 999999955445678887765  556789999999999999999999999999


Q ss_pred             CCCCCCCcEEe
Q psy8139         772 EPGPLSEPLTV  782 (1101)
Q Consensus       772 ~~S~~s~~~t~  782 (1101)
                      ++|+...+.|.
T Consensus       102 ~~S~~~~~~T~  112 (120)
T 1wfu_A          102 EYSPVVSVATT  112 (120)
T ss_dssp             EECCCEEEECC
T ss_pred             CCCccEeeEcC
Confidence            98876555444

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.29  E-value=2.1e-11  Score=130.20  Aligned_cols=127  Identities=13%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCee-eecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~-~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+.......+..+.+.+...+ .+|.+ ...+..+.+.+|+++.|.|.+.+.|.|.
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT-PSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS-CCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC-CCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence            357999999999999999999998775433211234556554332 23333 3445677788999999999999999999


Q ss_pred             EEEEECCEEeecCCcE----------------------EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         484 VSWYKDGFEIFSSRRQ----------------------RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~----------------------~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      +.|++++..+......                      ..... +...|.|.++...|+|.|+|.|.|..|.
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCccc
Confidence            9999998766432100                      00000 1248999999999999999999996664

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.29  E-value=6.1e-12  Score=116.87  Aligned_cols=93  Identities=22%  Similarity=0.327  Sum_probs=70.5

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ..|.+|.++.+...+.+++.|+|.+|.                                               +++++|
T Consensus        16 ~~P~~P~~~~~~~~~~~sv~l~W~~p~-----------------------------------------------~~~~~i   48 (118)
T 1x3d_A           16 CEPDIPNPPRIANRTKNSLTLQWKAPS-----------------------------------------------DNGSKI   48 (118)
T ss_dssp             SCCCCCCCCEEEEEETTEEEEECCCCC-----------------------------------------------CCSSCE
T ss_pred             CCCcCCCCcEEeccCCCEEEEEECCCC-----------------------------------------------CCCCcc
Confidence            467777788777777777777777654                                               233457


Q ss_pred             ceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         720 LGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       720 ~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      ++|.|+|+.... ..|..+..  ...++++|.+|.|++.|.|+|.|.|..|.|++|....+.|
T Consensus        49 ~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T  109 (118)
T 1x3d_A           49 QNFVLEWDEGKGNGEFCQCYM--GSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT  109 (118)
T ss_dssp             EEEEEEECTTTSSSCCEEEEE--ESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEEC
T ss_pred             eEEEEEEecCCCCCCeEEeec--cCCcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEc
Confidence            777777776554 46766544  4568999999999999999999999999999887665543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.28  E-value=3.1e-11  Score=129.50  Aligned_cols=193  Identities=12%  Similarity=0.133  Sum_probs=114.2

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E-E--ee--------------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F-E--IF--------------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~-~--~~--------------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+..|++++|.|.+.+.|  .+.+.|+++.  . .  +.              ...++.+..+  .+..+|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            35677899999999999999876  6789999852  1 1  10              1245555442  3456899999


Q ss_pred             cCCCCCEEEEEEEEeCCCce---EEEEEEeecc----CCcccc-CCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEE
Q psy8139         515 AALMDEGEIKCTATNRAGHS---ITKARLRLEA----PPTIRL-PKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLH  584 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g~~---~~s~~l~V~~----~p~~~~-~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~  584 (1101)
                      +...|+|.|.|.+.|..+..   ...+.|.|..    +|.+.. ++.    ..+..|+.++|.|.+.+. |.+ .|.|++
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~----~~v~~g~~v~L~C~~~g~~P~~i~v~W~k  167 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV----CGDTTGSSVTLGCLVKGYFPEPVTLTWNS  167 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC----CC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC----ccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence            99999999999999865321   1235677764    233322 211    124569999999999985 665 999999


Q ss_pred             CCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEE
Q psy8139         585 NGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS  661 (1101)
Q Consensus       585 ~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~ls  661 (1101)
                      ++..+.......+...+   ..+.|.|......+ |.|+|.|.|......    +.+.-.|..|         ...+.+.
T Consensus       168 ~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~----~~~~~~~~~~---------~~~~~~~  233 (261)
T 2xqy_G          168 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK----VDKKIEPRAS---------DDDDKAG  233 (261)
T ss_dssp             GTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE----EEEECCCC------------------
T ss_pred             CCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc----EEEEeccccC---------CCCcccC
Confidence            88765311000010111   14578888888777 999999999665422    2222122222         4456677


Q ss_pred             eecCCCC
Q psy8139         662 WSEPEDD  668 (1101)
Q Consensus       662 W~~p~~~  668 (1101)
                      |..|...
T Consensus       234 ~~~~~~~  240 (261)
T 2xqy_G          234 WSHPQFE  240 (261)
T ss_dssp             -------
T ss_pred             CCCcchh
Confidence            8776543

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=4.1e-12  Score=119.29  Aligned_cols=115  Identities=25%  Similarity=0.398  Sum_probs=86.9

Q ss_pred             EEEEEeCCCCceeEEEEEEe---cCCC-CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCC
Q psy8139         620 QAHGVNSLGEDVASFLVTVT---DRPL-PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPD  695 (1101)
Q Consensus       620 ~c~A~N~~G~~~~s~~l~v~---~~P~-~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~  695 (1101)
                      +|.|.|..|.+..+..+.+.   +.|. +|.++.+...+.+++.|+|++|..+                           
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~---------------------------   55 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSG---------------------------   55 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTT---------------------------
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCc---------------------------
Confidence            57788999987766555554   3344 6778888888888888888876431                           


Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                                        ..+++|.+|.|+|+..+...|.....  ...++++|.+|.|++.|.|+|.|.|..|.|++|.
T Consensus        56 ------------------~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  115 (124)
T 2ed9_A           56 ------------------TQNGFITGYKIRHRKTTRRGEMETLE--PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN  115 (124)
T ss_dssp             ------------------TCCSCCCEEEEEEEESSSSCCEEEEC--SSCSEEEEECCCSSCEEEECEEEECSSCBCCCCC
T ss_pred             ------------------CCCcEEeEEEEEEEECCCCcceEEec--CCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCC
Confidence                              13456889999998887766655432  6788999999999999999999999999998876


Q ss_pred             CCCcEE
Q psy8139         776 LSEPLT  781 (1101)
Q Consensus       776 ~s~~~t  781 (1101)
                      ...+.|
T Consensus       116 ~~~~~T  121 (124)
T 2ed9_A          116 WYTAET  121 (124)
T ss_dssp             CEEEEC
T ss_pred             CEEEEC
Confidence            655443

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=9.6e-12  Score=115.93  Aligned_cols=96  Identities=21%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|++|.++.+...+.+++.|+|++|.                                              .+.+++|
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~~p~----------------------------------------------~~~~g~i   49 (120)
T 1x5f_A           16 PLPSAPRDVVASLVSTRFIKLTWRTPA----------------------------------------------SDPHGDN   49 (120)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCS----------------------------------------------SCSSCCS
T ss_pred             CCCCCCCCcEEEecCCCEEEEEECCCC----------------------------------------------CCCCCcE
Confidence            567788888777777777777777654                                              1222368


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .+|.|+|+..+...|..........+.++|.+|.|++.|.|+|.|.|..|.|++|....+.|
T Consensus        50 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  111 (120)
T 1x5f_A           50 LTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET  111 (120)
T ss_dssp             SEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEEC
T ss_pred             EEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEe
Confidence            88888888887666665554446689999999999999999999999999988876554443

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=1.2e-11  Score=112.96  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=55.4

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       702 ~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      ++++|+|.+|..+++.+|++|.|+|+..+. ..|.....  ...++++|.+|.|++.|.|+|.|.|..|.|++|....+.
T Consensus        22 ~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~   99 (109)
T 1x5x_A           22 TWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD--GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFT   99 (109)
T ss_dssp             SEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEE--ESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEE
T ss_pred             CEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEe--CCccEEEECCCCCCCEEEEEEEEEeCCCCcCCccCEEeE
Confidence            334444444434444467778887776654 35554443  457899999999999999999999999998887665554


Q ss_pred             Ee
Q psy8139         781 TV  782 (1101)
Q Consensus       781 t~  782 (1101)
                      |.
T Consensus       100 T~  101 (109)
T 1x5x_A          100 TC  101 (109)
T ss_dssp             CC
T ss_pred             eC
Confidence            43

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.28  E-value=1.1e-10  Score=120.99  Aligned_cols=132  Identities=18%  Similarity=0.235  Sum_probs=92.0

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCCCceeE-EEEEEe--cCCCCCCccEEEEec----CCeEEEEeecCCCCCCcccceeE
Q psy8139         605 NLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTVT--DRPLPPGKAKVVMTL----GKSVTLSWSEPEDDGGCKIGNYI  677 (1101)
Q Consensus       605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s-~~l~v~--~~P~~P~~~~~~~~~----~~sv~lsW~~p~~~~g~~i~~Y~  677 (1101)
                      .+.+.+|.+...|.|++.|.|..|.+... ..+...  .+|.||.++.+....    .+++.|+|++|...+        
T Consensus        63 ~~~~~~l~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~--------  134 (210)
T 3n06_B           63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLID--------  134 (210)
T ss_dssp             EECGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCC--------
T ss_pred             EeCCCCcccceeEEEEEEEEcCCCCeeCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCcc--------
Confidence            34445788999999999999999976432 222221  357888887776543    356777777653211        


Q ss_pred             EEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCce
Q psy8139         678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       678 v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~  757 (1101)
                                                         ..+|..+.+|.|.|+..++..|.....  ...++++|.+|.|++.
T Consensus       135 -----------------------------------~~~g~~~~~Y~v~y~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~  177 (210)
T 3n06_B          135 -----------------------------------LKTGWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKILSLHPGQK  177 (210)
T ss_dssp             -----------------------------------CTTSSCCEEEEEEEECTTCSSCEEEEE--ETCSEEEECCCCTTCE
T ss_pred             -----------------------------------ccCCeEEEEEEEEEecCCCCCCEEEec--cCceEEEEeccCCCCE
Confidence                                               011224689999999887778876432  5678999999999999


Q ss_pred             EEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         758 YQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      |.|+|+|.|..|.  +|+++..+...
T Consensus       178 Y~v~Vra~~~~g~--wS~wS~~~~~~  201 (210)
T 3n06_B          178 YLVQVRCKPDHGY--WSAWSPATFIQ  201 (210)
T ss_dssp             EEEEEEEEESSSC--CCCCCCCEEEE
T ss_pred             EEEEEEEecCCCc--ccCCCCceeEE
Confidence            9999999998664  45555555443

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.8e-11  Score=113.78  Aligned_cols=95  Identities=24%  Similarity=0.293  Sum_probs=72.9

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|++|.++.+...+.+++.|+|.+|.+                                               ++++|
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~-----------------------------------------------~~~~i   48 (119)
T 2ed7_A           16 VLPSAPRDVVPVLVSSRFVRLSWRPPAE-----------------------------------------------AKGNI   48 (119)
T ss_dssp             SSCCCCSCCEEEEECSSCEEEECCCCSC-----------------------------------------------CSSCE
T ss_pred             CCCcCCcceEEEecCCCEEEEEEeCCCC-----------------------------------------------CCCcE
Confidence            4677777777777777777777776542                                               23468


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .+|.|+|+..+...|..........+.++|.+|.|++.|.|+|.|.|..|.|++|....+.|
T Consensus        49 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  110 (119)
T 2ed7_A           49 QTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT  110 (119)
T ss_dssp             EEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEECCEEEESSCBCSCCCCEEEEC
T ss_pred             EEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEEEEEEEcCCccCCCcCCEEEEe
Confidence            88999888877766665544446688999999999999999999999999988876655544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.28  E-value=1.1e-10  Score=121.99  Aligned_cols=162  Identities=14%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E--E-e---e-------------cCCcEEEEec--CCeeEEEEe
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F--E-I---F-------------SSRRQRIVTD--NDISTLIIH  513 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~--~-~---~-------------~~~~~~~~~~--~~~~~l~I~  513 (1101)
                      |..+.+.+|++++|.|.+.+.+  .+.+.|++..  .  . +   .             ...++.+..+  .+..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            4456789999999999998743  5789999732  1  1 1   0             1245555433  345689999


Q ss_pred             ecCCCCCEEEEEEEEeCC--CceEEEEEEeecc----CCccc-cCCCCCCCeEEeeCCEEEEEEEEee-cCC--CeeEEE
Q psy8139         514 QAALMDEGEIKCTATNRA--GHSITKARLRLEA----PPTIR-LPKQYEDGLLFEMGEIIKLKVSMAG-MPP--PTARWL  583 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~--g~~~~s~~l~V~~----~p~~~-~~~~~~~~~~v~~g~~~~l~c~~~g-~p~--~~v~W~  583 (1101)
                      ++...|+|.|.|.+.+..  ........|.|..    +|.+. ..+.   . . ..|..+.|.|.+.+ .|.  +.+.|.
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~---~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~  161 (221)
T 3m8o_H           87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLC---S-T-QPDGNVVIACLVQGFFPQEPLSVTWS  161 (221)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECC---S-C-CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred             CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCc---c-c-ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence            999999999999999864  1222334566652    23222 1111   1 1 56899999999998 665  489999


Q ss_pred             ECCeecC----------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         584 HNGEPLT----------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       584 ~~g~~l~----------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ++|..+.          .++.+.+     .+.|.|......+.|.|+|.|.|..|..
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          162 ESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             CCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             ECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9887662          2222222     3468899988889999999999987654

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-11  Score=110.70  Aligned_cols=101  Identities=29%  Similarity=0.417  Sum_probs=74.4

Q ss_pred             ecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCC
Q psy8139         639 TDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP  718 (1101)
Q Consensus       639 ~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~  718 (1101)
                      .+.|++|.++.+..++.+++.|+|.+|.                                                 +++
T Consensus         5 ~~~P~~P~~~~~~~~~~~sv~l~W~~~~-------------------------------------------------~~~   35 (106)
T 2dju_A            5 SSGPKPPIDLVVTETTATSVTLTWDSGN-------------------------------------------------SEP   35 (106)
T ss_dssp             CCSCCCCEEEEEEEEETTEEEEEEECCC-------------------------------------------------SSC
T ss_pred             CcCCcCCCCcEEEeccCCEEEEEEcCCC-------------------------------------------------CCC
Confidence            3567788888777777777777777541                                                 235


Q ss_pred             cceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCC
Q psy8139         719 VLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  792 (1101)
Q Consensus       719 i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p  792 (1101)
                      |.+|.|+|+..+.. .|..+..  ...+.++|.+|.|++.|.|+|.|.|..|.|++|....+.|.  +..|..||
T Consensus        36 i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~S~~~~~~T~--~~~P~~Pp  106 (106)
T 2dju_A           36 VTYYGIQYRAAGTEGPFQEVDG--VATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG--EQSGPSSG  106 (106)
T ss_dssp             CSEEEEEEEETTCCSCCCCBCC--CCSSEEEEESCCTTCEEEEEEEEECSSCBCCCCCCEEEECC--CSSCCCCC
T ss_pred             ceEEEEEEEECCCCCCeEEccC--CCccEEEEeCCCCCcEEEEEEEEEeCCccCCCcccEEeEcC--CCCCCCCC
Confidence            78888888776654 5655432  56788999999999999999999999999988876554433  35666655

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.28  E-value=1.9e-11  Score=128.35  Aligned_cols=130  Identities=9%  Similarity=0.097  Sum_probs=88.0

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-cCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~~  483 (1101)
                      ..+|.|.+++..|+|.|+|.|.|..|...     ..+.+.+...      +...+....+..|..+.|.|.+.| .|.|.
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~-----~~v~~~~~~~------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~  150 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEK-----ALVELKVAAL------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQ  150 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE-----EEEEEEEEBC------CCCCEEEEEEEETTEEEEEEEEEEEBSCCE
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEE-----EEEEEeeccc------eecccceeeeccCCceeeEEEeccCCCCCE
Confidence            45799999999999999999999776542     2234433211      122334556788999999999988 59999


Q ss_pred             EEEEECCE-EeecCCcEEEEecCC-eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccC
Q psy8139         484 VSWYKDGF-EIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP  545 (1101)
Q Consensus       484 v~W~~~g~-~~~~~~~~~~~~~~~-~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~  545 (1101)
                      |+|++++. .+............+ ...+.+..+...|.|.|+|.|.|..|....++.|.|..|
T Consensus       151 i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          151 IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            99998654 333222222222222 234455677889999999999999999998888888653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.28  E-value=6e-11  Score=126.55  Aligned_cols=174  Identities=13%  Similarity=0.080  Sum_probs=99.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..+....+..+..+.+.+... ..+|.+...|. ..+.+|++++|.|.+.+.+ +.
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~-~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~  136 (257)
T 1b6u_A           60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL-YEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DM  136 (257)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECS-SCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SE
T ss_pred             ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccC-CCCcceEccCC-CccCCCCEEEEEEeCCCCC-cE
Confidence            456899999999999999999987654333444567777776542 35677766654 4578999999999998764 68


Q ss_pred             EEEEECCEEeecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEeCCCc-----eEEEEEEeeccCCccccCCCCCCC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATNRAGH-----SITKARLRLEAPPTIRLPKQYEDG  557 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~-----~~~s~~l~V~~~p~~~~~~~~~~~  557 (1101)
                      +.|+++|..+.......... ......|.|.+++  |+|.|+|.|.+..+.     .+....|.|..+|....++..  .
T Consensus       137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~--~  212 (257)
T 1b6u_A          137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPT--E  212 (257)
T ss_dssp             EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------
T ss_pred             EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCc--c
Confidence            99999987654322111111 1224689999998  999999999976432     233478888888776533221  1


Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEEC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHN  585 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~  585 (1101)
                      .....|..+.|.|. .|.+.+.+.|...
T Consensus       213 ~~~~~g~~~~l~~~-~~~~~~~~~~~~~  239 (257)
T 1b6u_A          213 PSSETGNPRHLHAA-AEQKLISEEDLNL  239 (257)
T ss_dssp             ----------------------------
T ss_pred             cCccCCCeEEEEEE-EcchHHHHHHhhh
Confidence            13445778888864 4666778888754

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.27  E-value=3.7e-11  Score=128.59  Aligned_cols=177  Identities=12%  Similarity=0.161  Sum_probs=114.2

Q ss_pred             CceeEEccCCeEEEEEEEec--cCCCeEEEEECC----E-Ee---e-----------cCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEG--IPTPKVSWYKDG----F-EI---F-----------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g----~-~~---~-----------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+.+|++++|.|.+.+  .+...+.|++..    . .+   .           ...++.+..+  .+..+|+|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            45678899999999999976  335689999832    1 11   0           1134554432  34567999999


Q ss_pred             CCCCCEEEEEEEEeCC----CceEEEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCCC-eeEEEEC
Q psy8139         516 ALMDEGEIKCTATNRA----GHSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPP-TARWLHN  585 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~----g~~~~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~  585 (1101)
                      +.+|+|.|.|.+.+..    +.....+.|.|.    .+|.+...+.   ...+..|..+.|.|.+.+ .|.+ .+.|.++
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  163 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  163 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC---------CCEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC---CcccCCCCcEEEEEEEeeEeCCCeEEEEEeC
Confidence            9999999999998863    222233566665    2343321111   113456999999999998 6655 8999998


Q ss_pred             CeecCC--------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCC
Q psy8139         586 GEPLTS--------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP  644 (1101)
Q Consensus       586 g~~l~~--------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~  644 (1101)
                      +..+..        .+.+.+     .+.|.|......+ |.|+|.|.|..+.......+.+..+|.|
T Consensus       164 ~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~~~~~~  224 (253)
T 3liz_H          164 SLSSGVHTFPAVLQSDLYTL-----SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPRDCGCK  224 (253)
T ss_dssp             TBCTTEEECCCEEETTEEEE-----EEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC-----
T ss_pred             CeecceEeCCccccCCeEEE-----EEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCcccCCC
Confidence            864321        111211     3578899998888 9999999999887666666655533333

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.27  E-value=5.6e-11  Score=123.12  Aligned_cols=156  Identities=11%  Similarity=-0.043  Sum_probs=99.5

Q ss_pred             cceEEEEEEeCCCCCceeecccc-cCccEEEE--cCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCccc
Q psy8139         719 VLGYLVEHRRTGSPYWVRASPHM-VEDTELMV--SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI  795 (1101)
Q Consensus       719 i~~Y~V~~~~~~~~~~~~~~~~~-~~~~~~~i--~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~  795 (1101)
                      .+.|.|.|+..+...|..+.... ...+.+.+  .+|.+++.|.|+|.|.|..|.|.++ .  .........++.||.++
T Consensus        33 ~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V~A~N~~G~~~s~-~--~~~~~~~~v~p~pP~~l  109 (210)
T 3n06_B           33 PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSD-E--LYVDVTYIVQPDPPLEL  109 (210)
T ss_dssp             CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEEEEEETTEEEECC-C--EEECGGGCBCCCCCEEE
T ss_pred             CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEEEEEcCCCCeeCC-c--EEEchhheEecCCCceE
Confidence            36888888877666777654211 22345544  6799999999999999999987422 1  22223335678888877


Q ss_pred             ccc------cccceeccccCCCCCCccccceeeeecCc-chhHHHHhHhhhceeeEEeeeeccCCCCCCceeeee-cccc
Q psy8139         796 RAL------HDTTALEDEKPRNTNNCDYESKRTFQSTS-PMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVE-TNEH  867 (1101)
Q Consensus       796 ~~~------~~s~~~~~w~p~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~-~~~~  867 (1101)
                      ...      ..+.+.+.|.+|....         ..+| ..+            .|.|.|+..+. ..|...... ...+
T Consensus       110 ~~~~~~~~~~~~~l~l~W~~p~~~~---------~~~g~~~~------------~Y~v~y~~~~~-~~~~~~~~~~~~~~  167 (210)
T 3n06_B          110 AVEVKQPEDRKPYLWIKWSPPTLID---------LKTGWFTL------------LYEIRLKPEKA-AEWEIHFAGQQTEF  167 (210)
T ss_dssp             EEEEECCSSSCCEEEEEEECCTTCC---------CTTSSCCE------------EEEEEEECTTC-SSCEEEEEETCSEE
T ss_pred             EEEEecCcCCCceEEEEcCCCCCcc---------ccCCeEEE------------EEEEEEecCCC-CCCEEEeccCceEE
Confidence            622      1367788898765421         0111 234            89999988763 457553322 1344


Q ss_pred             ccCCCCCCCCCccCcccce--eeccccccc----CceeecccCCC
Q psy8139         868 TGTGAPSDNENESDYFPEK--TIDESVYGY----DTIVYGYDSDD  906 (1101)
Q Consensus       868 ~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~----~~~v~~~t~e~  906 (1101)
                      .+.+|.       +++.|.  |+|.|..|.    |..+...|.++
T Consensus       168 ~l~~L~-------p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~  205 (210)
T 3n06_B          168 KILSLH-------PGQKYLVQVRCKPDHGYWSAWSPATFIQIPSD  205 (210)
T ss_dssp             EECCCC-------TTCEEEEEEEEEESSSCCCCCCCCEEEECCTT
T ss_pred             EEeccC-------CCCEEEEEEEEecCCCcccCCCCceeEECcCC
Confidence            455555       999999  999998775    55565555443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.27  E-value=3e-11  Score=111.34  Aligned_cols=101  Identities=21%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.|...|.++.+..|+++.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++...|+|.|+|.|.|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            36788888889999999999999999999999999999999988877778777666677999999999999999999999


Q ss_pred             CCCceEEEEEEeeccCCcccc
Q psy8139         530 RAGHSITKARLRLEAPPTIRL  550 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~~~~  550 (1101)
                      ..|.....+.|.|..+|..+.
T Consensus        85 ~~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             SSCEEECCEEEEEECSCSCCC
T ss_pred             CCCcEEEEEEEEEECCCCCCC
Confidence            999888889999988775543

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.27  E-value=1.8e-11  Score=111.00  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      +.+++.|+|++|.. +|.+|++|.|+|+..+. .|.....  ...++++|.+|.|++.|.|+|.|.|..|.|++|....+
T Consensus        20 s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~~-~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~v~~   95 (106)
T 1x4x_A           20 SATCAQVNWEVPLS-NGTDVTEYRLEWGGVEG-SMQICYC--GPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVAC   95 (106)
T ss_dssp             ETTEEEEECCCCSC-SSSCCCEEEEEEESSTT-SCCEEEE--ESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEE
T ss_pred             CCCEEEEEEcCCCC-CCCcceEEEEEEEcCCC-ceEEEEe--CCcceEEEcCCCCCCEEEEEEEEEcCCcCCCCcCCEEE
Confidence            34444455554433 44567888888876553 3433322  56689999999999999999999999999888765444


Q ss_pred             E
Q psy8139         780 L  780 (1101)
Q Consensus       780 ~  780 (1101)
                      .
T Consensus        96 ~   96 (106)
T 1x4x_A           96 V   96 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.26  E-value=3.6e-12  Score=120.80  Aligned_cols=109  Identities=24%  Similarity=0.331  Sum_probs=78.6

Q ss_pred             EEEEeCCCCceeEE-EEEEe---cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCC
Q psy8139         621 AHGVNSLGEDVASF-LVTVT---DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDS  696 (1101)
Q Consensus       621 c~A~N~~G~~~~s~-~l~v~---~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~  696 (1101)
                      |.|.|..|.+..+. .+.+.   +.|++|.++.+...+.+++.|+|++|...+                           
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~---------------------------   55 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPN---------------------------   55 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCC---------------------------
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCC---------------------------
Confidence            45778888876553 23333   467888888888888888888888765333                           


Q ss_pred             CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC--ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY--WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                                          +.|.+|.|+|+..+...  |... ......++++|.+|.|++.|.|+|.|.|..|.|++|
T Consensus        56 --------------------g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  114 (130)
T 1wfo_A           56 --------------------GIILAYQITHRLNTTTANTATVE-VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAA  114 (130)
T ss_dssp             --------------------SCCCEEEEEEEESSCCCSCCCEE-EECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEE
T ss_pred             --------------------CceEEEEEEEEECCCCCceEEEE-EeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCc
Confidence                                34777888777765432  2211 223678899999999999999999999999998876


Q ss_pred             CCC
Q psy8139         775 PLS  777 (1101)
Q Consensus       775 ~~s  777 (1101)
                      ...
T Consensus       115 ~~~  117 (130)
T 1wfo_A          115 EAL  117 (130)
T ss_dssp             EEE
T ss_pred             ccE
Confidence            543

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-11  Score=110.86  Aligned_cols=92  Identities=21%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ..|.+|.++.+..++.++|.|+|++|..                                               .++.|
T Consensus         6 ~~P~~p~~l~~~~~~~~sv~l~W~~p~~-----------------------------------------------~~g~i   38 (109)
T 2e7h_A            6 SGPPAVSDIRVTRSSPSSLSLAWAVPRA-----------------------------------------------PSGAV   38 (109)
T ss_dssp             CSSCCCCCCEEEEEETTEEEEECCCCCC-----------------------------------------------SSSCC
T ss_pred             CCCCCCCccEEEecCCCEEEEEeCCCCC-----------------------------------------------CCCcE
Confidence            3566677777777777777777776542                                               23457


Q ss_pred             ceEEEEEEeCCC---CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         720 LGYLVEHRRTGS---PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       720 ~~Y~V~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .+|.|.|+..++   ..|..+.   ...+.++|.+|.|++.|.|+|+|.|..|.|++|....+.|
T Consensus        39 ~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  100 (109)
T 2e7h_A           39 LDYEVKYHEKGAEGPSSVRFLK---TSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT  100 (109)
T ss_dssp             CEEEEEEEETTCCSTTTSEEEE---ESSSEEEEESCCTTSCEEEEEEEECSSCBCCCCSCEECCC
T ss_pred             eEEEEEEEECCCCCCceeEEEc---cCCCEEEECCCCCCCeEEEEEEEEeCCccCCCCCCEEEEc
Confidence            888888877652   2233322   4567999999999999999999999999999887655444

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.26  E-value=2.2e-11  Score=110.31  Aligned_cols=86  Identities=28%  Similarity=0.419  Sum_probs=78.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+...+...+|.|.++...|.|.|+|.|.|..|....++.|
T Consensus        22 ~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  101 (107)
T 3knb_B           22 PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV  101 (107)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            45788999999999999999999999999999998888888877778899999999999999999999999999889999


Q ss_pred             EEecCC
Q psy8139         637 TVTDRP  642 (1101)
Q Consensus       637 ~v~~~P  642 (1101)
                      .|..+|
T Consensus       102 ~V~~pP  107 (107)
T 3knb_B          102 TVLEPP  107 (107)
T ss_dssp             EEEC--
T ss_pred             EEEcCC
Confidence            998765

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.25  E-value=8.9e-12  Score=115.54  Aligned_cols=98  Identities=36%  Similarity=0.599  Sum_probs=73.6

Q ss_pred             EecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCC
Q psy8139         638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS  717 (1101)
Q Consensus       638 v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~  717 (1101)
                      +...|.+|.++.+...+.+++.|+|.+|.                                               ++++
T Consensus        12 ~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-----------------------------------------------~~~~   44 (117)
T 1uem_A           12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGT-----------------------------------------------PGTL   44 (117)
T ss_dssp             SCCSCBCCCCCEEEEECSSCEEEECCCCB-----------------------------------------------CSSS
T ss_pred             CCCCccCCCCCEEEEecCCEEEEEEeCCC-----------------------------------------------CCCc
Confidence            34567777777777777777777776553                                               3345


Q ss_pred             CcceEEEEEEeCC-CCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         718 PVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|.+|.|+|+..+ ...|..+... ...+.++|.+|.|++.|.|+|+|.|..|.|++|..+..+++.
T Consensus        45 ~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~v~t~  110 (117)
T 1uem_A           45 PASAYIIEAFSQSVSNSWQTVANH-VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ  110 (117)
T ss_dssp             CCCEEEEEEEETTTEEEEEEEEEE-ECSSEEEECSCCTTCEEEEEEEEEETTEEEEECCCCCCEECC
T ss_pred             CceEEEEEEEECCCCCceeEcccc-cCcCEEEECCCCCCCEEEEEEEEECCCccCCCcCCCccEEcc
Confidence            6788888887764 4567665432 567899999999999999999999999999999888755443

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.25  E-value=9.8e-13  Score=138.43  Aligned_cols=154  Identities=14%  Similarity=0.058  Sum_probs=91.0

Q ss_pred             CCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCc
Q psy8139         714 DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS  793 (1101)
Q Consensus       714 ~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~  793 (1101)
                      +++..|++|.|++.......+.....  +..+++++.+|.|++.|.|+|.|.|..|.|++|......+.  ...|+.+|.
T Consensus        17 ~~~~~Vt~Y~~~~~~~~~~~~~~~~~--~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~--~~~~~~~~~   92 (232)
T 4go6_B           17 GTNVMVTHYFLPPDDAVPSDDDLGTV--PDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTC--LPGFPGAPC   92 (232)
T ss_dssp             SSEEEECEEECCCC--------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECC--CTTSCCCCE
T ss_pred             CCCEEEEEEEEEeeCCCCCcEEEEEC--CCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeec--CCCCCCCCe
Confidence            44556889999876554433332222  56788999999999999999999999999988766544433  356666666


Q ss_pred             ccc-cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCC------------Ccee
Q psy8139         794 FIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNE------------DDYD  860 (1101)
Q Consensus       794 ~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~------------~~~~  860 (1101)
                      ... ....+++.+.|.||...+            |++.            +|.|.|+.......            |...
T Consensus        93 ~~~~~~~~~sv~l~W~~P~~~~------------G~i~------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
T 4go6_B           93 AIKISKSPDGAHLTWEPPSVTS------------GKII------------EYSVYLAIQSSQAGGELKSSTPAQLAFMRV  148 (232)
T ss_dssp             EEEEEEETTEEEEEEECCSCCS------------SCCC------------EEEEEEEEC-------------CCEEEEEE
T ss_pred             eeEEecCCCEEEEEEeCCCCCC------------Ccee------------eEEEEEEECCCCCcceeeeccCCceeeEEE
Confidence            654 455667888998865543            4455            77777765543221            1111


Q ss_pred             eee---ccccccCCCCCCCCCccCcccce--eeccccccc
Q psy8139         861 IVE---TNEHTGTGAPSDNENESDYFPEK--TIDESVYGY  895 (1101)
Q Consensus       861 ~v~---~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~  895 (1101)
                      ...   ...+.+.++...+.+|.+.+.|.  |+|.|..|.
T Consensus       149 ~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~  188 (232)
T 4go6_B          149 YCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGY  188 (232)
T ss_dssp             EEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCB
T ss_pred             EeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcC
Confidence            100   01223344455566777999999  999999998

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.25  E-value=7.9e-11  Score=120.73  Aligned_cols=124  Identities=10%  Similarity=0.086  Sum_probs=87.0

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecC-CCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVV-GFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~-G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~  482 (1101)
                      ....|.|.++++.|+|.|+|.|.|.. |.+..   +..+.+.+... ..+|.+...+ ...+.+|++++|.|.+.+. .+
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~---s~~~~l~V~~~-~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~  129 (198)
T 1ugn_A           56 KKGQFPIPSITWEHTGRYRCYYGSDTAGRSES---SDPLELVVTGA-YIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FD  129 (198)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEETTTEECCC---CCCEEEEEECS-SCCCEEEEES-CSEEETTCCEEEEEECSSC-CS
T ss_pred             cccEEEECCCCHHHCeEEEEEEECCCCCcccC---CccEEEEEccc-ccCCccccCC-ccccCCCCcEEEEEecCCC-Cc
Confidence            45789999999999999999999987 53322   34456655432 2356655544 4678899999999999988 77


Q ss_pred             eEEEEECCEEeecCCcE-EEEe-cCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         483 KVSWYKDGFEIFSSRRQ-RIVT-DNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~-~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .+.|+++|..+...... .... .+....|.|.++...|+|.|+|.|.|..+.
T Consensus       130 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          130 GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             EEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             EEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            99999999876432211 1111 223568999999999999999999998763

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.24  E-value=6e-11  Score=107.01  Aligned_cols=95  Identities=23%  Similarity=0.378  Sum_probs=86.6

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.|...+.+..+..|+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            56788888899999999999999999999999999999999998888888877777789999999999999999999999


Q ss_pred             CCceEEEEEEeeccC
Q psy8139         531 AGHSITKARLRLEAP  545 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~  545 (1101)
                      .|.....+.|.|...
T Consensus        87 ~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           87 KGEASDYATLDVTGG  101 (103)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEEEEECC
Confidence            999988888888754

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.24  E-value=6.5e-11  Score=109.46  Aligned_cols=93  Identities=20%  Similarity=0.285  Sum_probs=72.6

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|++|.++.+...+.+++.|+|++|...                                               ++.|.
T Consensus        17 ~P~~P~~l~~~~~~~~si~l~W~~p~~~-----------------------------------------------~~~i~   49 (116)
T 1x5g_A           17 LPGPAPNLRAYAASPTSITVTWETPVSG-----------------------------------------------NGEIQ   49 (116)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCSCC-----------------------------------------------SSCCS
T ss_pred             CCcCCCccEEEecCCCEEEEEEeCCCCC-----------------------------------------------CCccc
Confidence            5677788887777777777777765432                                               23588


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|.|+|+..+...|..+.   ...++++|.+|.|++.|.|+|.|.|..|.|++|....+.|..
T Consensus        50 ~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  109 (116)
T 1x5g_A           50 NYKLYYMEKGTDKEQDVD---VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS  109 (116)
T ss_dssp             EEEEEEEETTCCCCCCEE---ECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCC
T ss_pred             EEEEEEEECCCCccEEEe---cCCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCC
Confidence            899998888766664332   467899999999999999999999999999998877666554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.24  E-value=2.7e-11  Score=125.92  Aligned_cols=138  Identities=13%  Similarity=0.048  Sum_probs=94.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC-ceeEEccCCeEEEEEEEeccC--C
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL-HDTTALEDEKVEFTVQVEGIP--T  481 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p-~~~~v~~g~~v~L~C~~~g~p--~  481 (1101)
                      ...|.|.+++..|+|.|+|.|.|..+..    .+..+.+.+..  ..+|.+...+ ..+.+..|++++|.|.+.|.|  .
T Consensus        63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~~----~s~~~~l~v~~--~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~  136 (213)
T 2x1w_L           63 KKGFTIPSYMISYAGMVFCEAKINDESY----QSIMYIVVVVG--YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG  136 (213)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEC----CE----ECCCEEEEECB--CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBC
T ss_pred             CccEEEccCChhcCceEEEEEEECCeeE----EEEEEEEEEeC--CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCc
Confidence            3579999999999999999999843321    12335555532  2345454444 445899999999999999855  4


Q ss_pred             CeEEEEECCEEeecCCc-EEEEe-------cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCcc
Q psy8139         482 PKVSWYKDGFEIFSSRR-QRIVT-------DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI  548 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~-~~~~~-------~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~  548 (1101)
                      +.+.|++++..+..... .....       ....++|.|.++...|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus       137 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          137 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             CEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred             eEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence            57999998765322111 00000       112347999999999999999999999999988999999887754

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.24  E-value=2.1e-11  Score=111.06  Aligned_cols=94  Identities=22%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             CCCCCCCcccCC-CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEE
Q psy8139         684 PGPPGKPQLLPD-SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       684 ~~~p~~p~~~~~-~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      .+.|++|..+.. ....+.+++.|+|++|. +.++.|.+|.|+|+..+...|....   ...+.++|.+|.|++.|.|+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~l~~L~p~t~Y~~~V   80 (108)
T 2dm4_A            5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPI-HTHGLIREYIVEYSRSGSKMWASQR---AASNFTEIKNLLVNTLYTVRV   80 (108)
T ss_dssp             CCCTTSCEEEEEECCTTCSSCEEEEEECCS-CCSSCEEEEEEEEEETTCSCCEEEE---ESSSEEEECSCCSSCEEEEEE
T ss_pred             CCCCcCCcCeEEEEeccCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCeEEec---CCccEEEeCCCCCCCEEEEEE
Confidence            345665554421 12357899999999997 5667799999999998887787653   456799999999999999999


Q ss_pred             EEEcCCccCCCCCCCCcEE
Q psy8139         763 TAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .|.|..|.|++|....+.|
T Consensus        81 ~A~n~~G~g~~S~~~~~~T   99 (108)
T 2dm4_A           81 AAVTSRGIGNWSDSKSITT   99 (108)
T ss_dssp             EEEESSCEEEECCCEEEEC
T ss_pred             EEECCCceeCCCCCEEEEC
Confidence            9999999988876555444

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.24  E-value=5.6e-11  Score=126.96  Aligned_cols=167  Identities=11%  Similarity=0.100  Sum_probs=98.5

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E--E-ee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F--E-IF--------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~--~-~~--------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|++..  .  . +.              ...++.+..+  .+..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            4456789999999999998865  5789999842  1  1 10              1245555543  45668999999


Q ss_pred             CCCCCEEEEEEEEeCCCc---------e----EEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC
Q psy8139         516 ALMDEGEIKCTATNRAGH---------S----ITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP  577 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~g~---------~----~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~  577 (1101)
                      ...|+|.|.|.+.+..|.         .    ...+.|.|..    +|.+...+.   ...+..|..++|.|.+.+. |.
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p---~~~~~~g~~v~L~C~~~g~~P~  163 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPE  163 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC--------------CCCEEEEEBSS
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecC---cccccCCCcEEEEEEEeeEECC
Confidence            999999999999987651         1    1235777765    343322111   1134578899999999986 76


Q ss_pred             C-eeEEEECCeecCCCCceEEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         578 P-TARWLHNGEPLTSGGRYEITHTDR----YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       578 ~-~v~W~~~g~~l~~~~~~~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      + .|+|++++..+.......+...++    .+.|.|......+ |.|+|.|.|..+.
T Consensus       164 pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          164 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             CCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             CcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            6 999999887643110000111111    3456777777666 9999999996544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.23  E-value=4.2e-11  Score=120.04  Aligned_cols=116  Identities=15%  Similarity=0.136  Sum_probs=86.0

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      .+++|.|.++++.|+|.|+|.|.|..|....   +..+.+.+... ...|.+.        ..+..++|.|.+.|.|.|.
T Consensus        59 ~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~---~~~~~l~V~~~-~~~p~i~--------~~~~~v~L~C~~~g~p~p~  126 (176)
T 1hng_A           59 ANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL---NKALDLRILEM-VSKPMIY--------WECSNATLTCEVLEGTDVE  126 (176)
T ss_dssp             TTSCEEESSCCGGGCEEEEEEEEETTCCEEE---EEEEEEEEECC-CCCCEEE--------EETTTTEEEEECSSCSSCE
T ss_pred             CCCcEEEcccccccCEEEEEEEEeCCCCEEE---EEEEEEEEeCC-CCCCEEE--------ecCCcEEEEEEecCCCCcE
Confidence            3467999999999999999999998876411   12344444322 2234332        2345689999999999999


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +.|+++|..+.....           +.|.++...|+|.|+|.|.|..|...+...|.+
T Consensus       127 i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          127 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            999999988764332           445578899999999999999998887765554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=1.2e-10  Score=118.28  Aligned_cols=118  Identities=13%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..|.+.   .+..+.+.+... ..+|.+...| +..+.+|++++|.|.+.+. .+.
T Consensus        55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~---~s~~~~l~V~~~-~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~  128 (188)
T 1oll_A           55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSE---PSNLLDLVVTEM-YDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSM  128 (188)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTEECC---CCCCEEEEEESC-SCCCEEEEES-CSEEETTCEEEEEEECSSS-CSE
T ss_pred             ceeEEEeCcCCcccCeEEEEEecCCCCCCC---CCCceEEEeccc-CCCCeEEECC-CCccccCCEEEEEEEcCCC-CCE
Confidence            456899999999999999999988655433   235566665432 3467776656 4568899999999998764 568


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +.|+++|..+..    ..........|.|.++...|+|.|+|.|.|..
T Consensus       129 ~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          129 FLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             EEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            999998865543    11223455689999999999999999999865

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.23  E-value=3.1e-11  Score=109.96  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             CCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         717 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +.|.+|.|.|+..+...|..... ....++++|.+|.|++.|.|+|+|.|..|.|++|....+.|
T Consensus        36 g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T   99 (108)
T 2djs_A           36 GIILDYEIRYYEKEHNEFNSSMA-RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT   99 (108)
T ss_dssp             SCEEEEEEEEEETTSCSTTCEEE-EESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEEC
T ss_pred             CeEEEEEEEEEECCCCCcceeEE-ecCccEEEEcCCCCCCEEEEEEEEEeCCEECCCCCCEEEEe
Confidence            45888888888776654432221 26778999999999999999999999999999887665444

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4e-11  Score=114.18  Aligned_cols=98  Identities=17%  Similarity=0.189  Sum_probs=74.8

Q ss_pred             CCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCCCc--eeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         697 PSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYW--VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ...+.+++.|+|++|. .+.++.|.+|.|.|+..+...+  ..+.......++++|.+|.|++.|.|+|.|.|..|.|++
T Consensus        28 ~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  107 (134)
T 2edx_A           28 VSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPE  107 (134)
T ss_dssp             ECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCC
T ss_pred             EeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCC
Confidence            3567889999999984 3455679999999998765432  333322367799999999999999999999999999888


Q ss_pred             CCCCCcEEecCCCCCCCCCcccc
Q psy8139         774 GPLSEPLTVTYQRSPAAAPSFIR  796 (1101)
Q Consensus       774 S~~s~~~t~~~~~~P~~~p~~~~  796 (1101)
                      |....+.|.  ++.|+.+|.++.
T Consensus       108 S~~~~~~T~--~~~P~~~P~~l~  128 (134)
T 2edx_A          108 SSPVLVRTD--EDVPSGPPRKVE  128 (134)
T ss_dssp             CCCEEEECC--CCSSCCCCCCCC
T ss_pred             CCCEEeecC--CCCCCCCCceeE
Confidence            765544443  366668887765

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.1e-11  Score=109.54  Aligned_cols=77  Identities=25%  Similarity=0.334  Sum_probs=56.3

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       702 ~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +++.|+|++|.. .+++|.+|.|+|+..+...|..+.   ...++++|.+|.|++.|.|+|.|.|..|.|++|....+.|
T Consensus        22 ~si~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T   97 (106)
T 2ed8_A           22 TSILITWEPPAY-ANGPVQGYRLFCTEVSTGKEQNIE---VDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT   97 (106)
T ss_dssp             TEEEEEEECCSS-CSSCCCEEEEEEEETTTCCEEEEE---ECSSCEEEESCCTTCEEEEEEEEECSSCEEEECCCEEEEC
T ss_pred             CEEEEEECCCCC-CCCCeeEEEEEEEECCCCceEEEe---CCccEEEECCCCCCCEEEEEEEEEeCCccCCCcCCEEEEc
Confidence            344444444432 234688999999888776776553   3578999999999999999999999999988876554444


Q ss_pred             e
Q psy8139         782 V  782 (1101)
Q Consensus       782 ~  782 (1101)
                      .
T Consensus        98 ~   98 (106)
T 2ed8_A           98 L   98 (106)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.23  E-value=8.4e-11  Score=122.41  Aligned_cols=116  Identities=12%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEE
Q psy8139         407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW  486 (1101)
Q Consensus       407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W  486 (1101)
                      .|.|.++++.|+|.|+|.|.|..|.+.   .+..+.+.+... ..+|.+...| +..+.+|++++|.|.+.+.|.+.+.|
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~---~s~~~~l~V~~~-~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W  139 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFR---YSDTLELVVTGL-YGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSL  139 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEE---ECCCEEEEEECS-SCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEE
T ss_pred             EEEEcccccccCEEEEEEEEcCCCcee---ecCCEEEEEcCc-ccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEE
Confidence            899999999999999999999765332   234566665432 3466666555 56789999999999777788889999


Q ss_pred             EECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       487 ~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +++|..+...  .  ........|.|.++..+|+|.|+|.|.|..
T Consensus       140 ~k~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          140 AKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             EETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             EECCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            9998765431  1  123344689999999999999999999864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.23  E-value=2.2e-11  Score=126.95  Aligned_cols=124  Identities=26%  Similarity=0.361  Sum_probs=95.4

Q ss_pred             EEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCeEEEE
Q psy8139         409 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWY  487 (1101)
Q Consensus       409 ~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~v~W~  487 (1101)
                      .|.+++..|.|.|+|.|.|..|....    ....+.+..   .+|.+...|....+..|+.+.|.|.+ .|.|.+.+.|+
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~----~~~~l~v~~---~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~  144 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVS----RHASLQIAV---LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWI  144 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEEC----CCEEEEECE---ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEE
T ss_pred             EeccCCcccCceEEEEEecCCCcccc----ccceEEEEE---eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEE
Confidence            68899999999999999998875422    223343331   34555666778889999999999999 89999999999


Q ss_pred             ECCEEeec--------CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         488 KDGFEIFS--------SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       488 ~~g~~~~~--------~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      +++..+..        ..++.... ++  .|.|.++...|.|.|+|.|.|..|....+..+.+
T Consensus       145 ~~g~~~~~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          145 KDGVPLDDLKAMSFGASSRVRIVD-GG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             ETTEEECCCCCC---CCCSEEEET-TT--EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ECCcCCCcccccccccCCcEEecC-CC--cEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence            99998873        23333332 22  7999999999999999999999998776644444

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.22  E-value=2.6e-10  Score=123.93  Aligned_cols=180  Identities=15%  Similarity=0.144  Sum_probs=116.9

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Eee--------------cCCcEEEEe-cCCeeEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EIF--------------SSRRQRIVT-DNDISTLI  511 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~~--------------~~~~~~~~~-~~~~~~l~  511 (1101)
                      .+.+...|..+.+.+|++++|.|.+.+.|.+.+.|++++  .   .+.              ...++.+.. ..+..+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            455666788899999999999999988888899999853  1   110              124555554 24566899


Q ss_pred             EeecCCCCCEEEEEEEEeCCCc------eEEEEEEeeccCCccccCCCC----CCCeEEeeCCEEEEEEEEeec-CC-Ce
Q psy8139         512 IHQAALMDEGEIKCTATNRAGH------SITKARLRLEAPPTIRLPKQY----EDGLLFEMGEIIKLKVSMAGM-PP-PT  579 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~------~~~s~~l~V~~~p~~~~~~~~----~~~~~v~~g~~~~l~c~~~g~-p~-~~  579 (1101)
                      |.++...|+|.|.|.+.|..|.      ....+.|.|........+|..    +....+..|..+.|.|.+.|. |. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            9999999999999999995321      112346777653211111110    000112257889999999987 43 69


Q ss_pred             eEEEECCeecCCCCceE---E---E-eecc----eEEEEEccCCCC-CCeEEEEEEEeCCCCce
Q psy8139         580 ARWLHNGEPLTSGGRYE---I---T-HTDR----YLNLRISDARRA-DRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       580 v~W~~~g~~l~~~~~~~---~---~-~~~~----~~sl~i~~l~~~-~~y~y~c~A~N~~G~~~  631 (1101)
                      +.|+++|.++..+....   .   . ..++    .+.|.|...... +.+.|+|.|.|......
T Consensus       184 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~  247 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence            99999998886532111   0   0 0111    234667666554 46789999999876544

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.22  E-value=8.4e-11  Score=118.94  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             CCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcc
Q psy8139         361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  440 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~  440 (1101)
                      ....++|.|....     +...|.+.  ..+..       .......|.|.++++.|+|.|+|.|.|..|.+..   +..
T Consensus        21 ~G~~v~L~C~~~~-----~~~~~~W~--k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---s~~   83 (184)
T 2gi7_A           21 LEKPVTLRCQGPP-----GVDLYRLE--KLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP---SDQ   83 (184)
T ss_dssp             TTCCEEEEEECST-----TCSEEEEE--ETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCC---CCC
T ss_pred             CCCcEEEEEeCCC-----CCCEEEEE--ECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCCccCC---CCC
Confidence            3567888888652     22233322  11111       1234578999999999999999999998764332   345


Q ss_pred             eEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       441 vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +.+.+.. ...+|.+...| +..+..|++++|.|.+.+.| +.+.|+++|..+......    ......|.|.++...|+
T Consensus        84 ~~l~V~~-~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~----~~~~~~L~i~~v~~~D~  156 (184)
T 2gi7_A           84 LELVATG-VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE----RWYRASFPIITVTAAHS  156 (184)
T ss_dssp             EEEEEES-SSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCC----EEEEESSSEEEETTCCS
T ss_pred             EEEEecC-cCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecC----CCceEEEEEccCCccCC
Confidence            6666532 23467776666 45678999999999987765 599999998766542211    11234799999999999


Q ss_pred             EEEEEEEEeCCCc
Q psy8139         521 GEIKCTATNRAGH  533 (1101)
Q Consensus       521 g~Y~C~a~n~~g~  533 (1101)
                      |.|+|.|.|..+.
T Consensus       157 G~Y~C~a~n~~~~  169 (184)
T 2gi7_A          157 GTYRCYSFSSRDP  169 (184)
T ss_dssp             EEEEEEEECTTST
T ss_pred             eEEEEEEEeCCCC
Confidence            9999999998653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.9e-11  Score=109.66  Aligned_cols=113  Identities=22%  Similarity=0.340  Sum_probs=89.2

Q ss_pred             CCCCCCCCCcceEEEeccCCCCCCeeee---cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCC
Q psy8139         430 GFSEPGPLSEPLTVTYQRSPAAAPSFIR---ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND  506 (1101)
Q Consensus       430 G~~~~s~~s~~vtv~~~~~~~~~P~~~~---~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  506 (1101)
                      |.+.++..+..+.+.   ....+|.+..   .+..+.+..|+++.|.|.+.|.|.|.+.|++++..+. ..++.+...+.
T Consensus         2 G~s~p~~~~~~v~~~---~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~   77 (118)
T 2e7c_A            2 SSGSSGTLAQPVTIR---EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDF   77 (118)
T ss_dssp             CCCCCCCCCCCCCCC---CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSS
T ss_pred             CcCCccccCCCEEEE---eeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCC
Confidence            555665554444332   1234666643   3567889999999999999999999999999999886 44555666666


Q ss_pred             eeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCC
Q psy8139         507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       507 ~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      ...|.|.++...|+|.|+|.|.|..|.....+.|.|..+|
T Consensus        78 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             eEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            6789999999999999999999999988888889888765

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.22  E-value=1.6e-10  Score=120.24  Aligned_cols=130  Identities=11%  Similarity=-0.087  Sum_probs=83.7

Q ss_pred             CccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccccc--------cccceeccccCCCCCC
Q psy8139         743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL--------HDTTALEDEKPRNTNN  814 (1101)
Q Consensus       743 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~~~--------~~s~~~~~w~p~~~~~  814 (1101)
                      ....+.+.+|.+++.|.|+|.|.|..|.+.. .  ..........++.||.++...        .++.+.+.|.+|..  
T Consensus        66 ~~~~~~~~~L~~~~~Y~~~V~A~N~~G~~~s-~--~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~--  140 (215)
T 1cd9_B           66 NNCSIPRKNLLLYQYMAIWVQAENMLGSSES-P--KLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP--  140 (215)
T ss_dssp             CEEEEEGGGCCTTSCEEEEEEEEETTEEEEC-C--CEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG--
T ss_pred             cEEEECCcccccceEEEEEEEEECCCCCccC-c--cEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC--
Confidence            3456778899999999999999999998632 1  122223334678888877622        35667888977532  


Q ss_pred             ccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeee---ccccccCCCCCCCCCccCcccce--eec
Q psy8139         815 CDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVE---TNEHTGTGAPSDNENESDYFPEK--TID  889 (1101)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~---~~~~~~~~~~~~l~~~~~~t~Y~--V~a  889 (1101)
                                .+...+            .|.|.|+....+..|......   ...+.+.+|.       +++.|.  |+|
T Consensus       141 ----------~~~~~l------------~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~-------p~t~Y~~~Vra  191 (215)
T 1cd9_B          141 ----------SEYMEQ------------ECELRYQPQLKGANWTLVFHLPSSKDQFELCGLH-------QAPVYTLQMRC  191 (215)
T ss_dssp             ----------GTTSCE------------EEEEEEEESSTTCCCEEEEEEESCEEEEEECCCC-------SCSCEEEEEEE
T ss_pred             ----------CCeEEE------------EEEEEEccCCCCCCcEEEecccCcceEEEEcCCC-------CCCEEEEEEEe
Confidence                      111224            899999833335567653221   1334444454       999999  999


Q ss_pred             cccccc------CceeecccCCC
Q psy8139         890 ESVYGY------DTIVYGYDSDD  906 (1101)
Q Consensus       890 ~n~~G~------~~~v~~~t~e~  906 (1101)
                      .|..|.      |..+...|.|+
T Consensus       192 ~~~~g~G~wS~wS~~~~~~T~e~  214 (215)
T 1cd9_B          192 IRSSLPGFWSPWSPGLQLRPTMK  214 (215)
T ss_dssp             EESSSCCCCCCCCCCEEECCCC-
T ss_pred             eECCCCCCCcCCCCccceecCCC
Confidence            998542      66667777654

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.22  E-value=2.4e-11  Score=109.05  Aligned_cols=91  Identities=18%  Similarity=0.242  Sum_probs=67.4

Q ss_pred             CCCCcccCCCCCCCCceEEEEeeCCCC-CCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCCCCceEEEEE
Q psy8139         687 PGKPQLLPDSPSLDRDVFTIRWEPPEY-DGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       687 p~~p~~~~~~~~~~~~si~l~W~pP~~-~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      |+.++.......++++++.|+|++|.. ..++.|.||.|.|+..+..   .|...... +..++++|.+|.|++.|.|+|
T Consensus         4 P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~-~~~~~~~l~~L~p~t~Y~v~V   82 (102)
T 3n1f_C            4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE-GSKQWHMIGHLQPETSYDIKM   82 (102)
T ss_dssp             CCSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEE-TTCSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEc-CCceEEECCCCCCCCEEEEEE
Confidence            333333333346789999999999753 4667899999999987654   46543332 456789999999999999999


Q ss_pred             EEEcCCccCCCCCCCC
Q psy8139         763 TAENVVGFSEPGPLSE  778 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~  778 (1101)
                      .|+|..|.|++|+...
T Consensus        83 ~A~n~~G~G~~S~~~~   98 (102)
T 3n1f_C           83 QCFNEGGESEFSNVMI   98 (102)
T ss_dssp             EEEETTEECCCCCCEE
T ss_pred             EEECCCcCCCCCCCEE
Confidence            9999999999986543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.22  E-value=6.8e-11  Score=121.78  Aligned_cols=122  Identities=13%  Similarity=0.129  Sum_probs=90.1

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CCCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v  484 (1101)
                      ..|.|.+++..|+|.|+|.|.|...       +..+.+.+.    .+|.+...+. ..+.+|++++|.|.+.+. |.+.+
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~~-------s~~~~l~V~----~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v  121 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLSTL-------SDPVQLEVH----IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKV  121 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSBC-------CCCEEEEEE----CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCcc-------cccEEEEEe----cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceE
Confidence            7899999999999999999976321       344566554    3455554444 678899999999999665 56789


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC-ceEEEEEEeeccCCc
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG-HSITKARLRLEAPPT  547 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g-~~~~s~~l~V~~~p~  547 (1101)
                      .|+++|..+...      ..  ...|.|.++...|+|.|+|.|.|..+ ..+....|.|..+|.
T Consensus       122 ~W~k~g~~~~~~------~~--~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          122 TYLQNGKGRKYF------HH--NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             EEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEECCcEeecc------cC--CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            999999876421      11  23799999999999999999999543 344467788876553

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=1.3e-11  Score=114.07  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  792 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p  792 (1101)
                      .|.+|.|+|+..+...|.....  ...+.++|.+|.|++.|.|+|+|.|..|.|++|....+.|..  ..|+.||
T Consensus        45 ~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~--~~P~~pp  115 (115)
T 1x5z_A           45 TIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ--SSGPSSG  115 (115)
T ss_dssp             CCCEEEECBEESSSCCCBCCEE--CSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECCC--CCCCCCC
T ss_pred             CccEEEEEEEeCCCCCceEEec--CCCcEEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecCC--CCCCCCC
Confidence            5889999998877666644333  466899999999999999999999999998887765544443  5555554

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.21  E-value=1.1e-10  Score=104.37  Aligned_cols=94  Identities=29%  Similarity=0.476  Sum_probs=82.2

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.|...|.+..+..|+++.|.|.+.|.|.+.+.|+++|..+.....+.+. ..++...|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            5678888889999999999999999999999999999999998876665543 245667899999999999999999999


Q ss_pred             CCCceEEEEEEeecc
Q psy8139         530 RAGHSITKARLRLEA  544 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~  544 (1101)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999988888888764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.21  E-value=1.3e-10  Score=107.35  Aligned_cols=100  Identities=29%  Similarity=0.444  Sum_probs=86.9

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEecC-CeeEEEEeecCCCCCEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTDN-DISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ..+|.|+..|.++.+..|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...+ +..+|.|.++...|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4678899999999999999999999999999999999999998874 4566665543 3458999999999999999999


Q ss_pred             EeCCCceEEEEEEeeccCCccc
Q psy8139         528 TNRAGHSITKARLRLEAPPTIR  549 (1101)
Q Consensus       528 ~n~~g~~~~s~~l~V~~~p~~~  549 (1101)
                      .|..|.....+.|.|..+|...
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSCCC
T ss_pred             EcCCCeEEEEEEEEEeCCCCCC
Confidence            9999999888999998877543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.21  E-value=4.9e-11  Score=119.67  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=93.0

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe-ccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~-g~p~~  482 (1101)
                      ....|.|.+++..|.|.|+|.+.|..+       +..+.+.+.    .++.+.. +....+..|++++|.|.+. +.|.+
T Consensus        49 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~-------s~~~~l~V~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~  116 (176)
T 1f2q_A           49 TNSSLNIVNAKFEDSGEYKCQHQQVNE-------SEPVYLEVF----SDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVY  116 (176)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSC-------CCCEEEEEE----CSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEE
T ss_pred             CceEEEEeccceecCEEEEEEcCCccc-------cccEEEEEe----Ccceeec-CCcceeeCCCCEEEEEEecCCCCce
Confidence            357899999999999999999977443       233555554    2333333 3345788999999999994 66777


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-EEEEEEeeccCCc
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-ITKARLRLEAPPT  547 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V~~~p~  547 (1101)
                      .+.|+++|..+...        .....|.|.++...|+|.|+|.|.|..+.. +..+.|.|..+|.
T Consensus       117 ~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          117 KVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEEETTEECCSC--------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEECCEEEeee--------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            99999999887432        123489999999999999999999975443 3357888887764

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.21  E-value=3.5e-11  Score=110.84  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         696 SPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      ...++.++|.|+|++|. ...++.|.+|.|.|+..+..   .|.... .....++++|.+|.|++.|.|+|.|+|..|.|
T Consensus        17 ~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   95 (114)
T 1x4y_A           17 TDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM-VEGDRYWHSISHLQPETSYDIKMQCFNEGGES   95 (114)
T ss_dssp             EECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEE-EETTCCEEEECSCCTTCEEEEEEEEECTTCCC
T ss_pred             EEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEe-cCCcEeEEEcCCCCCCCEEEEEEEEEcCCccC
Confidence            34678899999999986 35677899999999877654   332222 22556889999999999999999999999999


Q ss_pred             CCCCCCCcEE
Q psy8139         772 EPGPLSEPLT  781 (1101)
Q Consensus       772 ~~S~~s~~~t  781 (1101)
                      ++|....+.|
T Consensus        96 ~~S~~v~~~T  105 (114)
T 1x4y_A           96 EFSNVMICET  105 (114)
T ss_dssp             CCCCCEEEEC
T ss_pred             CCcCCEEEEe
Confidence            8877654444

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.21  E-value=1.1e-10  Score=118.14  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=92.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      ..+|.|.+++..|+|.|+|.+.|..|.         +.+.+..        ...+.+..+..|++++|.|.+.+.|.+.+
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~---------~~l~V~~--------~~~~~~~~v~~g~~~~l~C~~~~~p~~~v  129 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEE---------VQLLVFG--------LTANSDTHLLQGQSLTLTLESPPGSSPSV  129 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEE---------EEEEEEE--------EEESSCSEEETTCCEEEEEECCTTCCCEE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCc---------EEEEEEE--------ecCCCCceeecCCCEEEEEEcCCCCCCEE
Confidence            345999999999999999999887541         3333321        11244557889999999999999999999


Q ss_pred             EEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCc
Q psy8139         485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT  547 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~  547 (1101)
                      .|++++..+.        ...  ..|.|.++...|+|.|+|.|.|..|.....+.|.|...|.
T Consensus       130 ~W~~~~~~~~--------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~  182 (184)
T 2ny1_B          130 QCRSPRGKNI--------QGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  182 (184)
T ss_dssp             EEECTTSCEE--------EES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EEEeCCCccc--------cCc--eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence            9999875441        122  3899999999999999999999999888888999887664

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.20  E-value=3.8e-11  Score=128.63  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-Ce
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-PK  483 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-~~  483 (1101)
                      .+|.|.++++.|+|.|+|.|.|..+...    +....+.+.. +..+|.+...+....+..|..++|.|.+.|. |. +.
T Consensus       113 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~----~~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  187 (254)
T 2c1o_A          113 FTLKISRVEAEDLGIYYCVQGSHFPPTF----GAGTKLELKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN  187 (254)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEE----BCCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECcCCcccCEEEEEEEEcCcceEe----cCCEEEEECC-CCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcE
Confidence            4799999999999999999998754321    1122344432 2346766654444444568899999999884 44 46


Q ss_pred             EEEEECCEEeecCCc--EEEEecC-----CeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         484 VSWYKDGFEIFSSRR--QRIVTDN-----DISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~--~~~~~~~-----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ++|+++|..+.....  ......+     ..+.|.|.++...|+|.|+|.|.|.....
T Consensus       188 v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          188 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            999999987754411  1111111     13489999999999999999999987653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=5.5e-11  Score=133.93  Aligned_cols=131  Identities=19%  Similarity=0.203  Sum_probs=101.3

Q ss_pred             cccceEEEcCccCCccE-EEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCC
Q psy8139         403 VEDTELMVSGLEPGWRY-QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT  481 (1101)
Q Consensus       403 ~~~~~l~i~~L~p~d~y-~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~  481 (1101)
                      ....+|.|.++++.|.| .|+|.|.|..|....     .+.+.+    ..+|.+    ....+..|+.++|.|.+.|.|.
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~-----~~~l~V----~~~P~i----~~~~~~~g~~v~l~C~~~g~P~  275 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-----SVQVNV----SFPASV----QLHTAVEMHHWCIPFSVDGQPA  275 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCE-----EECCCC----BEEEEE----EECCCEESSSEEEEEEEEEESC
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEEE-----EEEEEE----cCCCee----eeccCccCceEEEEEEeeecCC
Confidence            34568999999999999 999999999876532     233322    234443    1122457899999999999999


Q ss_pred             CeEEEEECCEEeecCCcEEEEec-------CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCC
Q psy8139         482 PKVSWYKDGFEIFSSRRQRIVTD-------NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~~~~~~~-------~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      |.++|+++|..+...........       ...++|+|.++...|+|.|+|.|.|..|....++.|.|..+|
T Consensus       276 p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             CEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             CcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            99999999998876554433221       124579999999999999999999999999999999988765

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.20  E-value=3.5e-11  Score=109.45  Aligned_cols=88  Identities=25%  Similarity=0.439  Sum_probs=70.6

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      .+.|+.|..  .....+.+++.|+|++|. +.++.|.+|.|+|+..+...|..... ....++++|.+|.|++.|.|+|.
T Consensus         5 ~~~P~~p~~--~v~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~   80 (107)
T 2dn7_A            5 SSGPGRPTM--MISTTAMNTALLQWHPPK-ELPGELLGYRLQYCRADEARPNTIDF-GKDDQHFTVTGLHKGTTYIFRLA   80 (107)
T ss_dssp             CCCCCCCEE--EEEECSTTEEEEEEECCS-SCSSCCCEEEEEEEETTCSSCEEEEE-ETTCCEEEEECCCTTCEEEEEEE
T ss_pred             CCCCCCCcE--eEEecCCCEEEEEECCCC-CCCCceeEEEEEEEECCCCCCEEEEe-CCCccEEEeCCCCCCCEEEEEEE
Confidence            455666651  122348899999999987 55667999999999988878876543 26678999999999999999999


Q ss_pred             EEcCCccCCCCC
Q psy8139         764 AENVVGFSEPGP  775 (1101)
Q Consensus       764 A~n~~G~g~~S~  775 (1101)
                      |.|..|.|++|.
T Consensus        81 A~n~~G~g~~s~   92 (107)
T 2dn7_A           81 AKNRAGLGEEFE   92 (107)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEcCCcccCCee
Confidence            999999988875

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.5e-11  Score=110.90  Aligned_cols=89  Identities=25%  Similarity=0.429  Sum_probs=72.3

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      .+.|++|..+ ....++.+++.|+|++|..+  ++|.+|.|+|+..+...|..+.......+.++|.+|.|++.|.|+|+
T Consensus        15 ~~~P~~P~~l-~~~~~~~~sv~l~W~~p~~~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   91 (118)
T 2yrz_A           15 AGVPDTPTRL-VFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVR   91 (118)
T ss_dssp             CSCCCCCCCC-EECCCBTTEEEEECCCCCCS--SCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCCCCCCce-EEEeCCCCEEEEEeCCCCCC--CCccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCCEEEEEEE
Confidence            4455555544 34467889999999998765  48999999999988777876655446689999999999999999999


Q ss_pred             EEcCCccCCCCC
Q psy8139         764 AENVVGFSEPGP  775 (1101)
Q Consensus       764 A~n~~G~g~~S~  775 (1101)
                      |.|..|.|++|.
T Consensus        92 A~n~~G~g~~S~  103 (118)
T 2yrz_A           92 AQSQEGWGRERE  103 (118)
T ss_dssp             EEESSCEEEEEE
T ss_pred             EEcCCcCCCCcC
Confidence            999999988764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.20  E-value=2.3e-10  Score=114.56  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=89.7

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-  482 (1101)
                      ....|.|.+++..|.|.|+|.|.|..+       +..+.+.+.    .+|.+.. +....+.+|+.++|.|.+.+.|++ 
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~-------s~~~~l~V~----~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~  119 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTL-------SDPVQLEVH----IGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALH  119 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCC-------CCCEEEEEE----CSSEEEE-CSCSEEETTCCEEEEEEECTTCCCE
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcc-------cccEEEEEe----CCCceee-CCCceecCCCCEEEEEEcCCCCCce
Confidence            456899999999999999999987433       234566554    2333333 344678899999999999887665 


Q ss_pred             eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-EEEEEEeecc
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-ITKARLRLEA  544 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V~~  544 (1101)
                      .+.|+++|..+...      ..  ...|.|.++...|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       120 ~~~W~k~g~~~~~~------~~--~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          120 KVTYLQNGKDRKYF------HH--NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEEEETTEEEEEE------EE--CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEECCeEccCC------CC--CCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            99999999877421      11  2379999999999999999999976643 3345666643

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5.1e-11  Score=106.51  Aligned_cols=93  Identities=19%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.|...+.++.+.+|+++.|.|.+  .|.+.+.|+++|..+....++.+...+....|.|.++...|+|.|+|.|.|.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            56788888999999999999999999  7889999999999998888888888887889999999999999999999997


Q ss_pred             CCceEEEEEEeeccCCc
Q psy8139         531 AGHSITKARLRLEAPPT  547 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~  547 (1101)
                        ....++.|.|..+|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              556778899988774

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.20  E-value=9.8e-11  Score=122.37  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=89.1

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS  485 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~  485 (1101)
                      .+|.|.+++..|+|.|+|.|.| .|..     +..+.+.+... +..|..   +....+..|+.++|.|.+.|.|.|.+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~-~~~~-----~~~~~l~V~~~-~~~~~~---~~~~~~~~g~~v~L~C~~~g~P~p~i~  149 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY-GGAD-----YKRITVKVNAP-YNKINQ---RILVVDPVTSEHELTCQAEGYPKAEVI  149 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES-SSEE-----EEEEEEEEEBC-CCCCEE---EEEEEETTTTEEEEEEEEEEBSCCEEE
T ss_pred             EEEEEcCcccccCeEEEEEEEe-CCCc-----eeEEEEEEECC-CCCCCc---eeeeeecCCCcEEEEEEecCCCCCeEE
Confidence            4799999999999999999998 3322     12344544421 222221   122357889999999999999999999


Q ss_pred             EEEC-CEEeecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCcc
Q psy8139         486 WYKD-GFEIFSSRRQRIVT--DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI  548 (1101)
Q Consensus       486 W~~~-g~~~~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~  548 (1101)
                      |+++ +..+..........  .+......+..+...|.|.|+|.|.|..|.....+.|.|..+|..
T Consensus       150 W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~  215 (222)
T 3sbw_C          150 WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA  215 (222)
T ss_dssp             EEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred             EEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence            9998 55554322221111  111112223345678999999999999999999999999876643

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.20  E-value=1.7e-11  Score=111.89  Aligned_cols=90  Identities=38%  Similarity=0.731  Sum_probs=78.6

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      .+|.+|+.|.+.    .++.++++|+|.+|..+||.+|++|.|+++..+...|............+++.+|.+++.|.|+
T Consensus         9 ~~p~~P~~P~v~----~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~fr   84 (112)
T 1bpv_A            9 SPIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFR   84 (112)
T ss_dssp             CCCCCCCCCEEE----EEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEE
T ss_pred             CCCCCCCCCEEE----EeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEE
Confidence            578999999984    6789999999999888899999999999998877789887644456688999999999999999


Q ss_pred             EEEEecCCC-CCCCC
Q psy8139         423 ITAENVVGF-SEPGP  436 (1101)
Q Consensus       423 c~A~n~~G~-~~~s~  436 (1101)
                      |.|.|..|. +.+|.
T Consensus        85 V~A~N~~G~~s~~S~   99 (112)
T 1bpv_A           85 VIAKNAAGAISPPSE   99 (112)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             EEEEECCCCCCCCCC
Confidence            999999996 87663

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.20  E-value=4.4e-11  Score=126.41  Aligned_cols=163  Identities=15%  Similarity=0.207  Sum_probs=103.7

Q ss_pred             EccCCeEEEEEEEecc---CCC-eEEEEECCEEeecCCc-EEEEecC----CeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         464 ALEDEKVEFTVQVEGI---PTP-KVSWYKDGFEIFSSRR-QRIVTDN----DISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~---p~~-~v~W~~~g~~~~~~~~-~~~~~~~----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      +..|++++|.|.+.|.   |.+ .|+|++++..+..... ......+    ..+.|.|.++...|+|.|+|.+.|..|..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6799999999999887   766 8999998865432100 0000011    23479999999999999999999988864


Q ss_pred             EEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCC-CeeEEEECCeecCCCCceEE--Eeecc---e
Q psy8139         535 ITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPP-PTARWLHNGEPLTSGGRYEI--THTDR---Y  603 (1101)
Q Consensus       535 ~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~-~~v~W~~~g~~l~~~~~~~~--~~~~~---~  603 (1101)
                      .....+    .+..+|.+...+...   ....|..+.|.|.+.| .|. +.+.|+++|..+........  ..++.   .
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~---~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~  185 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPK---EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY  185 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCG---GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCCh---HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEE
Confidence            332222    344456543322211   1123778999999998 454 58999999998754221111  11111   1


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         604 LNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       604 ~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..+.|......+.|.|+|.|.|....
T Consensus       186 s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          186 SKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEChhhcCCCCEEEEEEECCCCC
Confidence            23444443334689999999998654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.20  E-value=1.6e-10  Score=123.75  Aligned_cols=136  Identities=13%  Similarity=0.070  Sum_probs=98.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--  482 (1101)
                      ..+|.|.++++.|+|.|.|.|.|..|.......+..+.+.+.    .+|.+...|..+.+..|++++|.|.+.+.|.+  
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~----~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  153 (256)
T 1nqb_A           78 TAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS----SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSN  153 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC----CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTT
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec----ccccEEecCcEEEEecCCcEEEEeEecCcccccc
Confidence            357999999999999999999998763111111233455543    44667777888899999999999999988875  


Q ss_pred             ---eEEEEE--CCEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEEeecc
Q psy8139         483 ---KVSWYK--DGFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA  544 (1101)
Q Consensus       483 ---~v~W~~--~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~  544 (1101)
                         .+.|++  ++..+.            ...++.........+|+|.++...|+|.|+|.|.|..+.... .+.|.|..
T Consensus       154 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          154 GNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             SCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             cceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence               999999  554321            124555554556678999999999999999999986443222 35566654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=103.32  Aligned_cols=93  Identities=30%  Similarity=0.504  Sum_probs=84.7

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|.+..+..|+++.|.|.+.|.|.+.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            56778888889999999999999999999999999999999998888888887777789999999999999999999999


Q ss_pred             CCceEEEEEEeec
Q psy8139         531 AGHSITKARLRLE  543 (1101)
Q Consensus       531 ~g~~~~s~~l~V~  543 (1101)
                      .|.....+.|.|.
T Consensus        85 ~g~~~~~~~l~V~   97 (99)
T 3puc_A           85 AGSVSSSCKLTIK   97 (99)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEeEEEEEEEE
Confidence            9998888888775

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=9.8e-11  Score=107.18  Aligned_cols=100  Identities=13%  Similarity=0.124  Sum_probs=71.7

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|.+|.++.+..++.++|.|+|.+|...++. +.                                          +.+
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~-~~------------------------------------------~~~   43 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQ-KI------------------------------------------TDS   43 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSS-CC------------------------------------------CSS
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCcccc-cc------------------------------------------CcC
Confidence            46788888888888888899888876543320 00                                          124


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      .+|.|.|+......+.... .....++++|.+|.|+|.|.|+|+|.|..|.|++|+...+.|..
T Consensus        44 ~~Y~v~y~~~~~~~~~~~~-~~~~~~~~~i~gL~P~T~Y~f~V~A~~~~G~g~~S~~v~~~T~~  106 (113)
T 1x5j_A           44 RYYTVRWKTNIPANTKYKN-ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE  106 (113)
T ss_dssp             CEEEEEECBSSSSSCCCEE-CCBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCCCCEECCC
T ss_pred             ceEEEEEEECCCCCeEEEE-EecCcCEEEeCCCCCCcEEEEEEEEecCCccCCCcccEEeeccC
Confidence            4788877763222222111 12567899999999999999999999999999998877766554

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.19  E-value=1.2e-10  Score=121.24  Aligned_cols=169  Identities=14%  Similarity=0.143  Sum_probs=107.7

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--EE---ee-------------cCCcEEEEec--CCeeEEEEeecC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--FE---IF-------------SSRRQRIVTD--NDISTLIIHQAA  516 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~~---~~-------------~~~~~~~~~~--~~~~~l~I~~l~  516 (1101)
                      |..+.+..|++++|.|.+.+.+  .+.+.|+++.  ..   +.             ...++.+..+  ++..+|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            5567889999999999998865  4789999852  11   10             1245555432  345689999999


Q ss_pred             CCCCEEEEEEEEeCCCc---eEEEEEEeecc----CCcccc-CCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEECC
Q psy8139         517 LMDEGEIKCTATNRAGH---SITKARLRLEA----PPTIRL-PKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLHNG  586 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~---~~~s~~l~V~~----~p~~~~-~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~~g  586 (1101)
                      ..|+|.|.|.+.|..|.   ....+.|.|..    +|.+.. ++..    .+..|..+.|.|.+.|. |.+ .+.|.++|
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~----~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  162 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC----GDTTSSTVTLGCLVKGYFPEPVTVTWNSGA  162 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS----SCCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh----hhccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence            99999999999987532   12235677763    233321 1111    23568999999999987 777 99999988


Q ss_pred             eecCCCCceEEEeecc-eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         587 EPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       587 ~~l~~~~~~~~~~~~~-~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      ..+...........+. .....+......+ |.|+|.|.|..|....
T Consensus       163 ~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          163 LSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             TCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            6543211111111111 1111222333345 9999999999887543

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=7.4e-11  Score=110.49  Aligned_cols=97  Identities=21%  Similarity=0.323  Sum_probs=76.6

Q ss_pred             CCCCCceEEEEeeCCCCC-CC-----CC--cceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcC
Q psy8139         697 PSLDRDVFTIRWEPPEYD-GG-----SP--VLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV  767 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~-~~-----~~--i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  767 (1101)
                      ..++.++++|+|.+|... +|     +.  |..|.|.|...+.. .+..+..  +..++++|.+|.|+|.|.|+|+|.|.
T Consensus        27 ~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~~~~--g~~ts~~v~~L~P~T~Y~~rV~A~n~  104 (137)
T 1wk0_A           27 SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYN  104 (137)
T ss_dssp             ESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEE--ESCSEEEECSCCTTCEECEEEEEEET
T ss_pred             EEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEEEEe--cCccEEEEcCCCCCCEEEEEEEEEeC
Confidence            367899999999998765 33     22  68999999876543 3333322  77899999999999999999999999


Q ss_pred             CccCCCCCCCCcEEecCCCCCCCCCccc
Q psy8139         768 VGFSEPGPLSEPLTVTYQRSPAAAPSFI  795 (1101)
Q Consensus       768 ~G~g~~S~~s~~~t~~~~~~P~~~p~~~  795 (1101)
                      .|.|++|....+.|....+.++.+|...
T Consensus       105 ~G~G~~S~~~~f~T~~~~P~~P~~p~l~  132 (137)
T 1wk0_A          105 SIKGTPSEAEIFTTLSCEPDIPNPPRIS  132 (137)
T ss_dssp             TEECCCCCCCCEECCCSSSCCCSCSCCC
T ss_pred             CCcCCCCCCEEEECCCCCCCCCCCCEEe
Confidence            9999999999888877555566666554

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.18  E-value=1.7e-10  Score=124.60  Aligned_cols=191  Identities=10%  Similarity=0.071  Sum_probs=115.1

Q ss_pred             CCCCcccCCCCCC--CCCeeEEEEeCCCCCCCcCeeEEEEEEEecC-------CCceEEcCccccccceEEEcCccCCcc
Q psy8139         348 PGKPQLLPDSPSL--DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-------SPYWVRASPHMVEDTELMVSGLEPGWR  418 (1101)
Q Consensus       348 P~~p~~l~~~~~~--~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~-------~~~w~~~~~~~~~~~~l~i~~L~p~d~  418 (1101)
                      .+....|.|....  +.....+.|.......  ......+.+....       .............+.+|.|.++++.|+
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~   96 (268)
T 3mj6_A           19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKD--DASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADE   96 (268)
T ss_dssp             TTCCEEECCBCCCSSCCCEEEEEEEEESSST--TCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGC
T ss_pred             cCCcEEEEEEeecCCCCceEEEEEEEeCCCC--CceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHC
Confidence            3566677776221  4567889998852221  2222222222110       011111111123447899999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE---eccCCCeEEEEEC-CEEee
Q psy8139         419 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV---EGIPTPKVSWYKD-GFEIF  494 (1101)
Q Consensus       419 y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~---~g~p~~~v~W~~~-g~~~~  494 (1101)
                      |.|+|.|.|..+....   +..+.+.+.+         ..|....+..|++++|.|.+   .+.|.+.+.|+++ +....
T Consensus        97 G~Y~C~~~~~~~~~~~---~~~~~l~V~~---------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~  164 (268)
T 3mj6_A           97 GIYTCEIRLKNESMVM---KKPVELWVLP---------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTE  164 (268)
T ss_dssp             EEEEEEEEETTCCCEE---EEEEEEEEEC---------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSS
T ss_pred             EEEEEEEEecCCcceE---EEEEEEEEec---------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCc
Confidence            9999999997554321   2334444431         13446788999999999999   6779999999983 21100


Q ss_pred             c-----------------C----CcEEEEe--cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec-cCCcccc
Q psy8139         495 S-----------------S----RRQRIVT--DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE-APPTIRL  550 (1101)
Q Consensus       495 ~-----------------~----~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~-~~p~~~~  550 (1101)
                      .                 .    .+..+..  ......|.|.++...|+|.|+|.|.|..|.....+.|.|. .+|.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~  244 (268)
T 3mj6_A          165 EETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTI  244 (268)
T ss_dssp             CEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC------
T ss_pred             ceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCeeee
Confidence            0                 0    0111110  1234589999999999999999999999988888888884 4554444


Q ss_pred             CC
Q psy8139         551 PK  552 (1101)
Q Consensus       551 ~~  552 (1101)
                      .|
T Consensus       245 ~p  246 (268)
T 3mj6_A          245 SP  246 (268)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.18  E-value=5.7e-11  Score=144.21  Aligned_cols=166  Identities=19%  Similarity=0.261  Sum_probs=116.8

Q ss_pred             ceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         460 HDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .++.+..|++++|.|.+ .+.|.+.++|++++..+.            ...+..+...+   +|.|.+++..|+|.|+|.
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEE
Confidence            35678999999999999 888999999999764210            01233332222   799999999999999999


Q ss_pred             EEeCCCce-EEEEEEeeccCCccccCCCCCCCeEEeeCC-EEEEEEEEee-cCCCeeEEEECCeecCCCC-ceEEEee--
Q psy8139         527 ATNRAGHS-ITKARLRLEAPPTIRLPKQYEDGLLFEMGE-IIKLKVSMAG-MPPPTARWLHNGEPLTSGG-RYEITHT--  600 (1101)
Q Consensus       527 a~n~~g~~-~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~-~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~-~~~~~~~--  600 (1101)
                      +.|..|.. .....|.|..+|..+....  ....+..+. .+.|.|.+.+ .|.+.++|+++|.++.... .+.+...  
T Consensus       451 ~~n~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~  528 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQIPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTR  528 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEBCCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEE
T ss_pred             EEcCCCceeEEEEEEEEEcCCCCCEEEc--CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeE
Confidence            99999887 6678888877554321111  111344444 4567999998 5999999999999986432 2222111  


Q ss_pred             -----c---ceEEEEEccCC-CCCCeEEEEEEEeCCCCc
Q psy8139         601 -----D---RYLNLRISDAR-RADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       601 -----~---~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~  630 (1101)
                           +   ..++|.|..+. ..+.+.|+|.|.|..+..
T Consensus       529 ~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          529 RHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             ECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             EcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence                 0   13568898888 555889999999987643

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.18  E-value=2.3e-10  Score=121.91  Aligned_cols=136  Identities=10%  Similarity=0.075  Sum_probs=97.3

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC-----------CCCCeeeecCceeEEccCCeEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP-----------AAAPSFIRALHDTTALEDEKVEFT  473 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~-----------~~~P~~~~~p~~~~v~~g~~v~L~  473 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..+....   +....+.+...+           ..+|.+...|..+.+.+|++++|.
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  156 (247)
T 2ghw_B           80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYW---GQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLS  156 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEE---CCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEE
T ss_pred             EEEEEECcCCHHHCEEEEEeeeccCCcccc---CCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEE
Confidence            357999999999999999999997322111   122345544321           235566677888889999999999


Q ss_pred             EEEeccCCCeEEEEE--CCEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EE
Q psy8139         474 VQVEGIPTPKVSWYK--DGFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KA  538 (1101)
Q Consensus       474 C~~~g~p~~~v~W~~--~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~  538 (1101)
                      |.+.+.|.+.+.|++  ++..+.            ...++.+...+...+|+|.++..+|+|.|+|.|.|..+.... .+
T Consensus       157 C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t  236 (247)
T 2ghw_B          157 CRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGT  236 (247)
T ss_dssp             EEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             EEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCE
Confidence            999999999999999  443221            124555554556678999999999999999999986443322 34


Q ss_pred             EEeec
Q psy8139         539 RLRLE  543 (1101)
Q Consensus       539 ~l~V~  543 (1101)
                      .|.|.
T Consensus       237 ~l~V~  241 (247)
T 2ghw_B          237 KVEVK  241 (247)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            55554

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.18  E-value=4.9e-11  Score=125.56  Aligned_cols=176  Identities=11%  Similarity=0.111  Sum_probs=112.5

Q ss_pred             CCee-eecCceeEEccCCeEEEEEEEecc-CC-C-eEEEEECCEEe-ecCCcEEEEecCC----eeEEEEeecCCCCCEE
Q psy8139         452 APSF-IRALHDTTALEDEKVEFTVQVEGI-PT-P-KVSWYKDGFEI-FSSRRQRIVTDND----ISTLIIHQAALMDEGE  522 (1101)
Q Consensus       452 ~P~~-~~~p~~~~v~~g~~v~L~C~~~g~-p~-~-~v~W~~~g~~~-~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~  522 (1101)
                      +|.+ +..|....+..|++++|.|.+.|. |. + .++|+++|..+ ...........++    .+.|.|.++...|+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~   91 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER   91 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence            4444 345666667899999999999885 63 4 99999988766 3222111111111    2479999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEeec----cCCccccCCCCCCCeEEeeCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceE
Q psy8139         523 IKCTATNRAGHSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYE  596 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~----~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~  596 (1101)
                      |+|.|.|..+.......+.+.    .+|.+...+....  . ..+..+.|.|.+.|. | .+.|.|+++|..+..+....
T Consensus        92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~--~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  168 (231)
T 2w59_A           92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPE--E-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVT  168 (231)
T ss_dssp             EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGG--G-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEE
T ss_pred             EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHH--H-hccCceEEEEEEEeccCCCcEEEEEECCEECCCccccc
Confidence            999999987653333333321    3444322111100  0 124579999999985 4 47999999999886543111


Q ss_pred             ---EE---------ee-cc---eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         597 ---IT---------HT-DR---YLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       597 ---~~---------~~-~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                         ..         .+ +.   .+.|.|......+.|.|+|.|.|.....
T Consensus       169 ~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          169 TAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             CCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             CccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence               11         11 11   2456777776677999999999987653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.18  E-value=1.4e-10  Score=124.19  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc-----------CCCCCCeeeecCceeEEccCCeEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR-----------SPAAAPSFIRALHDTTALEDEKVEFT  473 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~-----------~~~~~P~~~~~p~~~~v~~g~~v~L~  473 (1101)
                      ..+|.|.++++.|+|.|.|.|.|..+...    +....+.+..           .+..+|.+...|....+.+|++++|.
T Consensus        79 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  154 (253)
T 3uzq_A           79 TAYLHLSSLTSGDTAVYYCSRGWEGFAYW----GQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATIS  154 (253)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSSSCCEE----CCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEE
T ss_pred             eEEEEeCCCCcccCEEEEEEEeeCCccEE----CCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEE
Confidence            34599999999999999999998544321    1224444442           12346777888888999999999999


Q ss_pred             EEEeccCCC----eEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         474 VQVEGIPTP----KVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       474 C~~~g~p~~----~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      |.+.+.|.+    .+.|+++  +....            ...++.....+...+|+|.++..+|+|.|.|.|.|..+...
T Consensus       155 C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~f  234 (253)
T 3uzq_A          155 CRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTF  234 (253)
T ss_dssp             EEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCB
T ss_pred             EEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEE
Confidence            999998876    8999984  21111            12455555556667899999999999999999998765443


Q ss_pred             E-EEEEeeccCCccc
Q psy8139         536 T-KARLRLEAPPTIR  549 (1101)
Q Consensus       536 ~-s~~l~V~~~p~~~  549 (1101)
                      . .+.|.|...+.+.
T Consensus       235 g~gt~l~v~~~~~~~  249 (253)
T 3uzq_A          235 GGGTKLEIKRPLEHH  249 (253)
T ss_dssp             CCCEEEEECCC----
T ss_pred             CCCEEEEEcCCCCCc
Confidence            3 3567777655443

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.18  E-value=2.5e-11  Score=112.85  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         701 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       701 ~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      .+++.|+|.+|.. .++.|.+|.|+|+..+...+..........++++|.+|.|++.|.|+|.|.|..|.|++|...
T Consensus        31 ~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           31 DTSLKVSWQEPGE-KNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             SSEEEEECCCCTT-CCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEEcCCCC-CCCcEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            3344444444432 334588888888877644332222223677899999999999999999999999998886543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.18  E-value=4.9e-10  Score=117.05  Aligned_cols=137  Identities=12%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~  483 (1101)
                      ..+|.|.+++..|+|.|+|.+.|... .     +..+.+.+.. +..+|.+...+ ...+..|+.++|.|.+ .+.|.+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~-~-----~~~~~l~V~~-~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~  142 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDF-D-----SAAVSLQVAA-PYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAE  142 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCC-C-----CCCCCCCCCB-CCCCCEEECCC------CCSEEEEEEEEEEEBSCCE
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCC-c-----eEEEEEEEEc-CCCCCcEEeCC-CceecCCceEEEEEecccccCCCe
Confidence            56899999999999999999998532 2     1223333322 23446655444 3467789999999999 8899999


Q ss_pred             EEEEE-CCEEeecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccc
Q psy8139         484 VSWYK-DGFEIFSSRRQRIVT--DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR  549 (1101)
Q Consensus       484 v~W~~-~g~~~~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~  549 (1101)
                      +.|++ ++..+..........  .+....|.|.++...|.|.|+|.|.|..|....++.|.|..+|...
T Consensus       143 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  211 (222)
T 4i0k_A          143 VFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTF  211 (222)
T ss_dssp             EEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-----
T ss_pred             EEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcccc
Confidence            99998 454443322222221  2223458899999999999999999999999999999999877543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.18  E-value=4.8e-11  Score=123.31  Aligned_cols=160  Identities=19%  Similarity=0.279  Sum_probs=96.7

Q ss_pred             ccCCeEEEEEEEeccC----CCeEEEEECCEEeecCCc-EEEEecCCeeEEEEee---cCCCC---CEEEEEEEEeCCCc
Q psy8139         465 LEDEKVEFTVQVEGIP----TPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQ---AALMD---EGEIKCTATNRAGH  533 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~p----~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~l~I~~---l~~~d---~g~Y~C~a~n~~g~  533 (1101)
                      ..|++++|.|.+.|.+    .+.|+|++++..+..... ......++  .+.+..   +...|   +|.|+|.|.|..+.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g--~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~   93 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS--TYRVVSVLTVLHQDWLNGKEYKCKVSNKALP   93 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTS--CEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCC--cEEEEEEEEEEHHHccCCceEEEEEEcCcCC
Confidence            6899999999998875    349999999987653210 01111222  233322   33444   99999999998876


Q ss_pred             eEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCeecCCCCceEEEee-cc----
Q psy8139         534 SITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRYEITHT-DR----  602 (1101)
Q Consensus       534 ~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~~~~~~-~~----  602 (1101)
                      ......+    .+..+|.+...+....   ...|..+.|.|.+.|. |. +.+.|+++|..+........... ++    
T Consensus        94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~---~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~  170 (207)
T 1l6x_A           94 APIEKTISKAKGQPREPQVYTLPPSRD---ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL  170 (207)
T ss_dssp             SCEEEEECCCCSCCBCCEEEEECCCGG---GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEE
T ss_pred             cceEEEeccCCCCCcCCEEEEECCChH---HhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEE
Confidence            5333333    3344555432221110   1235669999999985 44 49999999988753211111111 11    


Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ...+.|......+.|.|+|.|.|....
T Consensus       171 ~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          171 YSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            123444444445689999999998654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.18  E-value=7.4e-12  Score=129.49  Aligned_cols=125  Identities=18%  Similarity=0.267  Sum_probs=92.4

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCeE
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKV  484 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~v  484 (1101)
                      ..|.|.++++.|.|.|+|.|.|..|....   +..+.+.+.    .+|.+...+....+..|+.+.|.|.+ .+.|.+.+
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~---~~~~~l~V~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v  140 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYG---EVKVKLIVL----VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY  140 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEE---CCEEECCEE----BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEE
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccc---eEEEEEEEe----cCCcCCCcccccceecCCEEEEEEeCCCCCCCcee
Confidence            78999999999999999999998763221   233444443    33444333445668899999999997 89999999


Q ss_pred             EEEECCEEeecCCcE-------EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         485 SWYKDGFEIFSSRRQ-------RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~-------~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      .|++++..+......       ........+.|.|.++...|.|.|+|.|.|..|....+
T Consensus       141 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             EEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             EEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            999999877643221       11111233589999999999999999999999987443

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=107.63  Aligned_cols=57  Identities=18%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         717 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      +.|.+|.|.|+....  |..........++++|.+|.|++.|.|+|.|.|..|.|+++.
T Consensus        45 g~i~gY~i~y~~~~~--~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~~~  101 (116)
T 2edb_A           45 IVVRGYIIGYGVGSP--YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLY  101 (116)
T ss_dssp             BCCCEEEEEEEESST--TSEEEEEETTCCEEEECSCCSSSBEEEEEEEEETTEECSCEE
T ss_pred             CceeEEEEEEEeCCC--CeEEEEeCCCeeEEEeCCCCCCCEEEEEEEEEeCCccCCCCc
Confidence            457888888876432  222222236778999999999999999999999999988754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.18  E-value=8.5e-11  Score=140.22  Aligned_cols=72  Identities=36%  Similarity=0.598  Sum_probs=63.3

Q ss_pred             CCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       710 pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|..+||++|++|.|+++..++..|..+..  ...+.+++.+|.||+.|.|||.|.|.+|.|+||+.+..+++.
T Consensus        32 ~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~--~~~t~~~V~~L~~g~~Y~FRV~A~N~~G~s~PS~~s~~v~~~  103 (573)
T 3uto_A           32 PPALDGGSLVTNYTIEKREAMGGSWSPCAK--SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIP  103 (573)
T ss_dssp             CCSCCSSSCCCEEEEEEEESSSCCCEEEEE--ESSSEEEECCCCTTCEEEEEEEEEETTEECCCCCCCCCEECC
T ss_pred             CCCcCCCCcccEEEEEEEECCCCceEEecc--ccCCEEEeCCCCCCCcEeEEEEEEcCceEcCCcCCCCCEEcC
Confidence            344556678999999999999999999876  567899999999999999999999999999999999888775

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=6.1e-11  Score=110.79  Aligned_cols=85  Identities=13%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCCCceEEEEeeCCCCC-CCCCcceEEEEEEeCCCCCcee---ec-ccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         697 PSLDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSPYWVR---AS-PHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~-~~~~i~~Y~V~~~~~~~~~~~~---~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      ...+.+++.|+|++|..+ .++.|.+|.|.|+..+...|..   .. ....+.++++|.+|.|++.|.|+|.|.|..|.|
T Consensus        25 ~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  104 (122)
T 1va9_A           25 QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTG  104 (122)
T ss_dssp             EECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEEC
T ss_pred             EeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEEEcCCCCC
Confidence            356789999999998753 5677999999999887654422   21 122456899999999999999999999999998


Q ss_pred             CCCCCCCcEE
Q psy8139         772 EPGPLSEPLT  781 (1101)
Q Consensus       772 ~~S~~s~~~t  781 (1101)
                      ++|....+.|
T Consensus       105 ~~S~~~~~~T  114 (122)
T 1va9_A          105 PSSSEINATT  114 (122)
T ss_dssp             CCCCCEECCC
T ss_pred             CCccCEEEEe
Confidence            8876654443

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=1.6e-10  Score=106.37  Aligned_cols=86  Identities=14%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCC----CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      +..+++++|.|+|+++  ..++.|.+|.|.|++.+.    ..|.......+..++++|.+|.|+|.|.|+|.|+|..|.|
T Consensus        24 ~~a~sstsi~vsW~~~--~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~G  101 (120)
T 1ujt_A           24 PVVLTPTTVQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQG  101 (120)
T ss_dssp             CCCCBTTEEEEEEEES--SCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCC
T ss_pred             cEEccCceEEEEEccC--CCCCcEeeEEEEEEECCCCCCCCccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCccC
Confidence            4457889999999974  345679999999998865    4676544434667899999999999999999999999999


Q ss_pred             CCCCCCCcEEec
Q psy8139         772 EPGPLSEPLTVT  783 (1101)
Q Consensus       772 ~~S~~s~~~t~~  783 (1101)
                      ++|+...+.|..
T Consensus       102 p~S~~v~~~T~e  113 (120)
T 1ujt_A          102 MDSESKTVRTTE  113 (120)
T ss_dssp             CCCCCEEEEECS
T ss_pred             CCCCCEEEECCC
Confidence            998766555543

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=6.1e-11  Score=111.24  Aligned_cols=86  Identities=26%  Similarity=0.321  Sum_probs=62.5

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|++|.++.+...+ +++.|+|++|...+                                               +.|.
T Consensus        27 ~P~~P~~l~~~~~~-~sv~l~W~~P~~~~-----------------------------------------------g~i~   58 (126)
T 1x5i_A           27 VPEVPSSLHVRPLV-TSIVVSWTPPENQN-----------------------------------------------IVVR   58 (126)
T ss_dssp             CCCSCSEEEEEEET-TEEEEEEECCSCTT-----------------------------------------------BCCC
T ss_pred             CCCCCCeeEEEecC-CEEEEEEcCCCCCC-----------------------------------------------CCEe
Confidence            57777788777775 77777777664333                                               3477


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      +|.|+|+. +...+.... .....++++|.+|.|++.|.|+|.|+|..|.|+++..
T Consensus        59 ~Y~v~y~~-~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~  112 (126)
T 1x5i_A           59 GYAIGYGI-GSPHAQTIK-VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE  112 (126)
T ss_dssp             EEEEEECS-SCGGGEEEE-CCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred             EEEEEEEc-CCCCceEEE-eCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceee
Confidence            77777763 222222222 2367789999999999999999999999999988753

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.17  E-value=5.1e-10  Score=115.17  Aligned_cols=132  Identities=15%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             eEEEEEccCCCCCCeEEEEEEEeCCCCceeE-EEEEE--ecCCCCCCccEEEEe-cCCeEEEEeecCCCCCCcccceeEE
Q psy8139         603 YLNLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTV--TDRPLPPGKAKVVMT-LGKSVTLSWSEPEDDGGCKIGNYIV  678 (1101)
Q Consensus       603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s-~~l~v--~~~P~~P~~~~~~~~-~~~sv~lsW~~p~~~~g~~i~~Y~v  678 (1101)
                      .....|..+.....|.+.+.|.|..|...+. ..+.+  ...|.||.++.+... ..+++.|+|++|..           
T Consensus        68 ~~~C~~~~~~~~~~Y~~~V~a~N~~G~~~s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~-----------  136 (206)
T 3v6o_A           68 FYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF-----------  136 (206)
T ss_dssp             CEEEEECSCCTTSCEEEEEEEC---CCEECCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC----------------
T ss_pred             CceEEeCcHHhcccEEEEEEEEcCCccccCCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCC-----------
Confidence            4567788888889999999999999976432 22221  246899999887655 46777888876531           


Q ss_pred             EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCC-CCCceeecccccCccEEEEcCCCCCce
Q psy8139         679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~  757 (1101)
                                                         .  ..++.|.|.|+..+ ...|............+.|.+|.|++.
T Consensus       137 -----------------------------------~--~~~l~yev~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~  179 (206)
T 3v6o_A          137 -----------------------------------P--ENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAV  179 (206)
T ss_dssp             ----------------------------------------CEEEEEEEEESSSSCCCEEEEECC---CEEEECCSCTTSC
T ss_pred             -----------------------------------C--CCcEEEEEEEEECCCCCceEEEecccCcceeEEeecCCCCCE
Confidence                                               1  12578999999876 457877654323335789999999999


Q ss_pred             EEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         758 YQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      |.|+|+|.+..|.|.+|++|....+
T Consensus       180 Y~vqVRa~~~~~~G~WSeWS~~~~~  204 (206)
T 3v6o_A          180 YAVQVRCKRLDGLGYWSNWSNPAYT  204 (206)
T ss_dssp             EEEEEEEEETTSCSCCCCCCCCEEC
T ss_pred             EEEEEEEecCCCCCcCCCCCcceEe
Confidence            9999999999999999999987654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.17  E-value=2.3e-10  Score=105.36  Aligned_cols=101  Identities=25%  Similarity=0.366  Sum_probs=87.2

Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      +|.+...+   ..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.
T Consensus         7 pp~i~~~~---~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            7 GPQIIQFP---EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCEESCCC---CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCEEEeCC---CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            45554433   356889999999999999999999999999999987777877766668899999999999999999999


Q ss_pred             eCCCCceeEEEEEEecCCCCCCcc
Q psy8139         625 NSLGEDVASFLVTVTDRPLPPGKA  648 (1101)
Q Consensus       625 N~~G~~~~s~~l~v~~~P~~P~~~  648 (1101)
                      |..|.......|.|...|.+|..+
T Consensus        84 N~~g~~~~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           84 NKLGSRQAQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             CSSCEEECCEEEEEECSCSCCCCC
T ss_pred             ECCCcEEEEEEEEEECCCCCCCCC
Confidence            999998889999999988888654

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=106.72  Aligned_cols=78  Identities=18%  Similarity=0.247  Sum_probs=54.0

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEeCCC---CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCC
Q psy8139         702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGS---PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  778 (1101)
Q Consensus       702 ~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~  778 (1101)
                      +++.|+|.+|.. .+++|.+|.|+|+..+.   ..|..... ....++++|.+|.|++.|.|+|+|.|..|.|++|....
T Consensus        25 ~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  102 (114)
T 2ede_A           25 RAVIVSWQPPLE-ANGKITAYILFYTLDKNIPIDDWIMETI-SGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPIL  102 (114)
T ss_dssp             SCEEEEEECCSS-CSSCCSEEEEEEESCSSSCTTTSEEEEE-ETTCCEEEECSCCSSCEEEEEEEEECSSCBCCCCCCEE
T ss_pred             CEEEEEECCCCC-CCCceeEEEEEEEeCCCCCccceEEEEE-CCCceEEEEcCCCCCCEEEEEEEEEeCCcCcCCcccEE
Confidence            444444444432 23357788888876433   24543332 26778999999999999999999999999988876655


Q ss_pred             cEE
Q psy8139         779 PLT  781 (1101)
Q Consensus       779 ~~t  781 (1101)
                      +.|
T Consensus       103 ~~T  105 (114)
T 2ede_A          103 FRT  105 (114)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.17  E-value=1.3e-10  Score=106.64  Aligned_cols=97  Identities=19%  Similarity=0.254  Sum_probs=79.6

Q ss_pred             ccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCC---CcC-eeEEEEEEEecCCCceEEcCccccccceEE
Q psy8139         334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG---GSP-VLGYLVEHRRTGSPYWVRASPHMVEDTELM  409 (1101)
Q Consensus       334 s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g---~~~-i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~  409 (1101)
                      ++-+.+.+..+|++|.+|.+    ..++.++|+|+|.+|.++|   +.+ |++|.|+........|..+..  ...++++
T Consensus         5 ~~~~~~~~~~pp~~P~~p~v----~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~--~~~t~~~   78 (120)
T 1wfu_A            5 SSGMEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHV   78 (120)
T ss_dssp             CCCCCCTTCCCCCCCCCCBC----CCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEE
T ss_pred             cccEEEEeeCCCCCCCCcee----ceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEec--CCccEEE
Confidence            34467888999999999986    4788999999999998776   666 999999955445667876543  2356799


Q ss_pred             EcCccCCccEEEEEEEEecCCCCCCCC
Q psy8139         410 VSGLEPGWRYQFRITAENVVGFSEPGP  436 (1101)
Q Consensus       410 i~~L~p~d~y~y~c~A~n~~G~~~~s~  436 (1101)
                      |.+|.|++.|.|+|.|.|..|.+.+|.
T Consensus        79 v~gL~p~t~Y~frV~A~n~~G~s~~S~  105 (120)
T 1wfu_A           79 VEGLEPRTLYKFRLKVTSPSGEYEYSP  105 (120)
T ss_dssp             EESCCTTCEEEEEEEEECSSSCEEECC
T ss_pred             ECCCCCCCEEEEEEEEECCCCCCCCCc
Confidence            999999999999999999999887663

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=7.6e-11  Score=108.01  Aligned_cols=82  Identities=23%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      ..+.+++.|+|++|.. .+++|.+|.|+|+..+...+.... .....+.++|.+|.|++.|.|+|+|.|..|.|++|...
T Consensus        21 ~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~   98 (111)
T 1x5l_A           21 RAGQTSVSLLWQEPEQ-PNGIILEYEIKYYEKDKEMQSYST-LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM   98 (111)
T ss_dssp             CBCSSCEEEEECCCSC-CCSCCCEEEEEEEESSSCCSSCEE-EEESSSEEEECSCCTTCEEEECEEEEETTEECCCCCCE
T ss_pred             EcCCCEEEEEECCCCC-CCCEEEEEEEEEEECCCCceeEEE-ecCCCCEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccE
Confidence            4566777777777744 345689999999887643322211 12567899999999999999999999999999888765


Q ss_pred             CcEE
Q psy8139         778 EPLT  781 (1101)
Q Consensus       778 ~~~t  781 (1101)
                      .+.|
T Consensus        99 ~~~T  102 (111)
T 1x5l_A           99 EVET  102 (111)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5544

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.17  E-value=1.9e-10  Score=101.15  Aligned_cols=90  Identities=22%  Similarity=0.339  Sum_probs=78.1

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.|...+.++.+.+|++++|.|.+.+ |.+.+.|+++|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            46788889999999999999999999987 45789999999999888888888888788999999999999999999976


Q ss_pred             CCCceEEEEEEeecc
Q psy8139         530 RAGHSITKARLRLEA  544 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~  544 (1101)
                      .    ..++.|.|..
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            3    4567777754

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.16  E-value=1.7e-10  Score=103.62  Aligned_cols=86  Identities=23%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ..|++|.++.+..++.+++.|+|.+|...                                               ++.|
T Consensus         6 t~~~~P~~l~v~~~t~~Sv~lsW~~p~~~-----------------------------------------------~g~i   38 (103)
T 3t04_D            6 SVSSVPTKLEVVDATPTSLKISWDAYYSS-----------------------------------------------WQNV   38 (103)
T ss_dssp             CCCCCCCSCEEEEEETTEEEEECTTTTTT-----------------------------------------------SCCC
T ss_pred             ccCCCCceeEEEecCCCEEEEEccCCCCC-----------------------------------------------CCcc
Confidence            35788888888888888888888866432                                               2457


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC--CccCC
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV--VGFSE  772 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~--~G~g~  772 (1101)
                      .+|.|.|...+...+........+.++++|.+|.|++.|.|+|.|.|.  .|.|+
T Consensus        39 ~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~~~~~G~~~   93 (103)
T 3t04_D           39 KYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEP   93 (103)
T ss_dssp             CEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEESCCCTTCCC
T ss_pred             ceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeCCCCCCCC
Confidence            888888887654322222223367899999999999999999999999  99877

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.16  E-value=4.5e-11  Score=124.16  Aligned_cols=132  Identities=18%  Similarity=0.225  Sum_probs=94.8

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-  481 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-  481 (1101)
                      ...+|.|.++++.|+|.|+|.|.|..|...  ..+..+.+.+...+..+|.+...+....+..|+.++|.|.+.|. |+ 
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~--~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~  145 (213)
T 3mj8_L           68 NMATLTISKAQAGDEADYYCQSWDGTNSAW--VFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPAD  145 (213)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTTTEE--EEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSC
T ss_pred             CEEEEEECCCChhhCEEEEEEeccCCccee--EEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCC
Confidence            345799999999999999999999877210  11233556665555577888777766666789999999999985 33 


Q ss_pred             CeEEEEECCEEeecCCcE--EEEecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         482 PKVSWYKDGFEIFSSRRQ--RIVTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~~--~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +.++|+++|..+......  .....+   ..+.|.|.++...|.|.|+|.|.|..+....+
T Consensus       146 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  206 (213)
T 3mj8_L          146 VAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS  206 (213)
T ss_dssp             CEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred             eEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence            489999999988642100  000111   12368999999999999999999988655443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.16  E-value=8.4e-10  Score=117.98  Aligned_cols=172  Identities=15%  Similarity=0.162  Sum_probs=108.4

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee------------cCC-cEEEEecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF------------SSR-RQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~------------~~~-~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+..|++++|.|.+.+.+.+.+.|++.  +..   +.            ... ++.+...+... |.|.+++.
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~   83 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANM   83 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESC
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCCh
Confidence            3456778899999999999998888899999982  110   10            011 44444443333 99999999


Q ss_pred             CCCEEEEEEEEeCCC---c---eEEEEEEeeccCCccccCCCCC----CCeEEeeCCEEEEEEEEee-cCCC-eeEEEEC
Q psy8139         518 MDEGEIKCTATNRAG---H---SITKARLRLEAPPTIRLPKQYE----DGLLFEMGEIIKLKVSMAG-MPPP-TARWLHN  585 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g---~---~~~s~~l~V~~~p~~~~~~~~~----~~~~v~~g~~~~l~c~~~g-~p~~-~v~W~~~  585 (1101)
                      +|+|.|.|.+.+..+   .   ......|.|........+|...    ....+..|..+.|.|.+.| .|.+ .++|.++
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~  163 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  163 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEEC
Confidence            999999999987654   1   1123456665322111111100    0001113689999999998 5666 8999999


Q ss_pred             CeecCCCCceEEEe-------ecc----eEEEEEccCCCCC-CeEEEEEEEeCCC
Q psy8139         586 GEPLTSGGRYEITH-------TDR----YLNLRISDARRAD-RGEYQAHGVNSLG  628 (1101)
Q Consensus       586 g~~l~~~~~~~~~~-------~~~----~~sl~i~~l~~~~-~y~y~c~A~N~~G  628 (1101)
                      |..+..+.......       .++    .+.|.|......+ .+.|+|.|.|..-
T Consensus       164 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          164 GKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             TEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            98886432111000       011    2456676666555 7799999998753

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.15  E-value=4.8e-10  Score=117.86  Aligned_cols=120  Identities=16%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecC-CCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeE-EEEEEE-eccCC
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVV-GFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKV-EFTVQV-EGIPT  481 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~-G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v-~L~C~~-~g~p~  481 (1101)
                      ++.|.|.+++..|+|.|+|.|.|.. |..     +..+.+.+... +..|.+...+....+..|+.+ .|.|.+ .+.|.
T Consensus        76 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~~l~V~~~-p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~  149 (231)
T 2pet_A           76 QGRLVLAEAQVGDERDYVCVVRAGAAGTA-----EATARLNVFAK-PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA  149 (231)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEECGGGCEE-----EEEEEEEEEBC-CCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC
T ss_pred             CceEEEcccCcccCceEEEEEEecCCCce-----EEEEEEEEEec-CCCcEEecCCcceeecCCCceEEEEEEeECcccC
Confidence            3559999999999999999999986 332     23345555432 344777777777778899988 999999 89999


Q ss_pred             CeEEEEECCEEeecCC----cEEEEec----C-C----eeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         482 PKVSWYKDGFEIFSSR----RQRIVTD----N-D----ISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~----~~~~~~~----~-~----~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      |.+.|++++..+....    ++.+...    . +    .+.|.|......|.|.|+|.|.|.
T Consensus       150 p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            9999999999887554    4433321    1 1    146888755566799999999995

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.15  E-value=3.9e-11  Score=113.91  Aligned_cols=99  Identities=18%  Similarity=0.286  Sum_probs=75.0

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCC-CCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~-~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      +.|+.++........+.+++.|+|.+|..+ .++.|.+|.|+|+..+...|..........++++|.+|.|++.|.|+|+
T Consensus        16 ~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   95 (132)
T 1x5h_A           16 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVA   95 (132)
T ss_dssp             SSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECE
T ss_pred             CCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCCCCCEEEEEEE
Confidence            444433322233457889999999998764 5677999999999887655554433446789999999999999999999


Q ss_pred             EEcCCccCCCCCCCCcEEec
Q psy8139         764 AENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       764 A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      |.|..|.|++|....+.|..
T Consensus        96 A~n~~G~g~~S~~~~~~T~~  115 (132)
T 1x5h_A           96 ALTINGTGPATDWLSAETFE  115 (132)
T ss_dssp             EEETTEEEEECCCEEEECCS
T ss_pred             EEcCCccCCCCcCEEeEcCc
Confidence            99999999888766555543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.15  E-value=3.5e-10  Score=123.11  Aligned_cols=139  Identities=15%  Similarity=0.107  Sum_probs=96.8

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCC-----------CCCCeeeecCceeEEccCCeEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP-----------AAAPSFIRALHDTTALEDEKVEFT  473 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~-----------~~~P~~~~~p~~~~v~~g~~v~L~  473 (1101)
                      ..+|.|.++++.|+|.|.|.+.|..|.......+..+.+.+...+           ..+|.+...|..+.+.+|++++|.
T Consensus       104 ~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~  183 (282)
T 1qok_A          104 TAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTIT  183 (282)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEE
T ss_pred             eEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEE
Confidence            357999999999999999999998762111111122344444332           134566677888899999999999


Q ss_pred             EEEeccCCCeEEEEE--CCEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EEE
Q psy8139         474 VQVEGIPTPKVSWYK--DGFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TKA  538 (1101)
Q Consensus       474 C~~~g~p~~~v~W~~--~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~  538 (1101)
                      |.+.+.| +.+.|++  +|..+.            ...++.....+...+|+|.++...|+|.|+|.|.|..+... ..+
T Consensus       184 C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  262 (282)
T 1qok_A          184 CSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT  262 (282)
T ss_dssp             EEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             EEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence            9999999 8999999  554321            12455555455667899999999999999999987543222 235


Q ss_pred             EEeecc
Q psy8139         539 RLRLEA  544 (1101)
Q Consensus       539 ~l~V~~  544 (1101)
                      .|.|..
T Consensus       263 ~l~V~~  268 (282)
T 1qok_A          263 KLELKR  268 (282)
T ss_dssp             EEEEC-
T ss_pred             EEEEec
Confidence            566653

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.15  E-value=5.5e-10  Score=114.68  Aligned_cols=123  Identities=12%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.++++.|+|.|+|.|.|..+....+..+..+.+.+... ..+|.+...|. ..+.+|++++|.|.+.+ +.+.
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~-~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~  137 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL-YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDM  137 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECS-SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSE
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeecc-CCCCceecCCC-CccCCCCeEEEEEeCCC-CCce
Confidence            346799999999999999999987643222333455666666532 35677776665 47899999999999986 5678


Q ss_pred             EEEEECCEEeecCCcEEEEecC-CeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDN-DISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +.|+++|..+...........+ ....|.|.++.  |+|.|+|.|.+..
T Consensus       138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            9999998765432111111121 24589999998  9999999998763

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.15  E-value=3.3e-10  Score=116.35  Aligned_cols=131  Identities=10%  Similarity=0.116  Sum_probs=88.2

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe-ccCCC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTP  482 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~-g~p~~  482 (1101)
                      ...+|.|.++++.|+|.|+|.|.|..|..........+.+.+... ...|.+...    ....|+.+.|.|.+. |.|.|
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~-~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p  137 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKAD-FPTPSISDF----EIPTSNIRRIICSTSGGFPEP  137 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECC-CCCCEEEEE----ECSSTTEEEEEEEEEEESSCE
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCC-CCCCceEec----cCCCCCeEEEEEecCCccCCC
Confidence            346899999999999999999999876543211123355555432 223443321    124588999999994 99999


Q ss_pred             eEEEEECCEEeecCCcEEEEecC-Ce-eEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDN-DI-STLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~-~~-~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      .|+|+++|..+............ +. ....+..+...|.|.|+|.|.|..|..+....
T Consensus       138 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             EEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            99999999887654322222222 22 12234556678999999999999987766543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.14  E-value=7.3e-10  Score=112.66  Aligned_cols=158  Identities=14%  Similarity=0.189  Sum_probs=112.1

Q ss_pred             cCceeEEccCCeEEEEEEEe-ccC---CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         458 ALHDTTALEDEKVEFTVQVE-GIP---TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~-g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .|....+..|+.++|.|.+. |.|   +..++|+++|..+..          ....|.+..+...++|.|+|.+.+..|.
T Consensus         8 ~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT~tLti~s~t~sdSG~YqCvVTDa~Gc   77 (304)
T 3shs_A            8 QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NTATLTVADATSENAGSYKVTVQDTDTM   77 (304)
T ss_dssp             EESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred             CCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------CcceEEeeeccccCCeEEEEEEEECCCC
Confidence            35555678999999999876 456   457999999987642          2338999999999999999999998887


Q ss_pred             eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEE--ee-cC-----CCeeEEEECCeecCCCCceEEEeecceEE
Q psy8139         534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM--AG-MP-----PPTARWLHNGEPLTSGGRYEITHTDRYLN  605 (1101)
Q Consensus       534 ~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~--~g-~p-----~~~v~W~~~g~~l~~~~~~~~~~~~~~~s  605 (1101)
                      ...+..+.|..++.+......+..+.+..+..+.|.+.+  .| .|     ..++.|++++..+..           ..+
T Consensus        78 s~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-----------Aq~  146 (304)
T 3shs_A           78 TSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-----------TQD  146 (304)
T ss_dssp             CEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-----------SSE
T ss_pred             eeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-----------ccc
Confidence            766554444443322111122334455567788888877  43 33     469999999976643           335


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         606 LRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       606 l~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      +++..+...+.|.|+|.+.|..|....+...
T Consensus       147 lT~sS~TateaG~YtV~VTn~~~~c~~s~~~  177 (304)
T 3shs_A          147 ITIQEFTADKNGVYTVKVWGESEDSAASAST  177 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSGGGCEEEEE
T ss_pred             cceeeEEecCCeEEEEEEEcCCCCcccccce
Confidence            6677788889999999999998865444433

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.14  E-value=8.6e-10  Score=116.65  Aligned_cols=171  Identities=17%  Similarity=0.231  Sum_probs=107.5

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E-E--ee------------cCCcEEEEe-cCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F-E--IF------------SSRRQRIVT-DNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~-~--~~------------~~~~~~~~~-~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+..|++++|.|.+. .+.+.+.|++.+  . .  +.            ...++.+.. .++..+|.|.++..
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            4457788899999999999985 467899999853  1 1  10            123444443 24456899999999


Q ss_pred             CCCEEEEEEEEeCCC---ce--EEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCC-eeEEEE
Q psy8139         518 MDEGEIKCTATNRAG---HS--ITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPP-TARWLH  584 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g---~~--~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~-~v~W~~  584 (1101)
                      .|+|.|.|.+.|..+   ..  .....|.|..      +|.+...+.  ....+..|..+.|.|.+.|. |.+ .+.|++
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~--~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  159 (238)
T 1bec_A           82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEP--SKAEIANKQKATLVCLARGFFPDHVELSWWV  159 (238)
T ss_dssp             GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECC--CSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred             ccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECC--ChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence            999999999998742   11  1234567764      333322110  01123458889999999986 654 999999


Q ss_pred             CCeecCCCCceE---EEeecce----EEEEEccCCCC-CCeEEEEEEEeCCCC
Q psy8139         585 NGEPLTSGGRYE---ITHTDRY----LNLRISDARRA-DRGEYQAHGVNSLGE  629 (1101)
Q Consensus       585 ~g~~l~~~~~~~---~~~~~~~----~sl~i~~l~~~-~~y~y~c~A~N~~G~  629 (1101)
                      +|..+..+....   ....++.    ..|.|...... +.+.|+|.|.|....
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  212 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLS  212 (238)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCC
T ss_pred             CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCC
Confidence            998886543211   1111111    12333322222 367899999997543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.14  E-value=1.2e-10  Score=124.79  Aligned_cols=143  Identities=15%  Similarity=0.056  Sum_probs=98.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCC----CCCCCcceEEEeccCCC-----------CCCeeeecCceeEEccCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSE----PGPLSEPLTVTYQRSPA-----------AAPSFIRALHDTTALEDEK  469 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~----~s~~s~~vtv~~~~~~~-----------~~P~~~~~p~~~~v~~g~~  469 (1101)
                      ..+|.|.++++.|+|.|.|.|.|..|.+.    ....+....+.+...+.           .++.+...|..+.+.+|++
T Consensus        77 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~  156 (257)
T 1f3r_B           77 QVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDR  156 (257)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCC
T ss_pred             EEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCC
Confidence            35899999999999999999999865211    00011223455443221           1234455677788999999


Q ss_pred             EEEEEEEeccCCCeEEEEE--CCEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         470 VEFTVQVEGIPTPKVSWYK--DGFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       470 v~L~C~~~g~p~~~v~W~~--~g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      ++|.|.+.+.|.+.+.|++  +|..+.            ...++.+...+...+|+|.++...|+|.|.|.|.|......
T Consensus       157 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g  236 (257)
T 1f3r_B          157 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFG  236 (257)
T ss_dssp             EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEEC
T ss_pred             EEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeEC
Confidence            9999999999888999999  543221            12455554445567899999999999999999999751111


Q ss_pred             EEEEEeeccCCc
Q psy8139         536 TKARLRLEAPPT  547 (1101)
Q Consensus       536 ~s~~l~V~~~p~  547 (1101)
                      ..+.|.|...+.
T Consensus       237 ~gt~l~V~~~~~  248 (257)
T 1f3r_B          237 AGTKLELKAAEQ  248 (257)
T ss_dssp             CCCEECCSSSCC
T ss_pred             CCEEEEEeCCCc
Confidence            235677765543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=103.27  Aligned_cols=95  Identities=29%  Similarity=0.527  Sum_probs=80.3

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.|...|.++.+..|++++|.|.+.|.|.+.+.|++++..+...... .....++...|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            4677777788899999999999999999999999999999988765432 333345557899999999999999999999


Q ss_pred             CCCceEEEEEEeeccC
Q psy8139         530 RAGHSITKARLRLEAP  545 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~  545 (1101)
                      ..|....++.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999888888888653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.14  E-value=3.3e-10  Score=101.17  Aligned_cols=85  Identities=25%  Similarity=0.495  Sum_probs=75.1

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|+++|..+....  ++.+...++..+|.|.++...|.|.|+|.|.|..|..+.+
T Consensus        13 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T 3knb_A           13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT   92 (100)
T ss_dssp             SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence            35678899999999999999999999999999987543  5677777778899999999999999999999999998888


Q ss_pred             EEEEEec
Q psy8139         634 FLVTVTD  640 (1101)
Q Consensus       634 ~~l~v~~  640 (1101)
                      +.|.|..
T Consensus        93 ~~l~V~~   99 (100)
T 3knb_A           93 VNIHIRS   99 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            8888864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.14  E-value=4.8e-10  Score=120.13  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=98.8

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC------------CCCCCeeeecCceeEEccCCeEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS------------PAAAPSFIRALHDTTALEDEKVEF  472 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~------------~~~~P~~~~~p~~~~v~~g~~v~L  472 (1101)
                      ..+|.|.++++.|+|.|.|.|.|..+... ...+....+.+...            ...+|.+...|..+.+.+|++++|
T Consensus        80 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~-~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L  158 (256)
T 3umt_A           80 TAYLELRSLTSEDSAVYYCARDDRYPAWF-AYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSI  158 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCSTTCCS-CEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEccCCCccc-cEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEE
Confidence            34699999999999999999998732111 11122344555431            113677788888899999999999


Q ss_pred             EEEEeccCCCeEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-E
Q psy8139         473 TVQVEGIPTPKVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-K  537 (1101)
Q Consensus       473 ~C~~~g~p~~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s  537 (1101)
                      .|.+.+.|.+.+.|++.  +....            ...++.....+...+|+|.++...|+|.|.|.|.|..+.... .
T Consensus       159 ~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~g  238 (256)
T 3umt_A          159 TCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGG  238 (256)
T ss_dssp             EEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCC
T ss_pred             EEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCC
Confidence            99999999899999983  22111            124566555666778999999999999999999986544332 3


Q ss_pred             EEEeeccCC
Q psy8139         538 ARLRLEAPP  546 (1101)
Q Consensus       538 ~~l~V~~~p  546 (1101)
                      +.|.|..++
T Consensus       239 t~L~V~~~~  247 (256)
T 3umt_A          239 TKLEIKRAA  247 (256)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEECCC
Confidence            567776544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.14  E-value=7e-10  Score=117.29  Aligned_cols=132  Identities=12%  Similarity=0.133  Sum_probs=95.8

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK  483 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~  483 (1101)
                      ....|.|.+++..|+|.|+|.+.|..+.+.   .+..+.+.+... ..+|.+...| ...+.+|++++|.|.+.+. .+.
T Consensus        58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~---~S~~~~L~V~~~-~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~  131 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSE---PSNLLDLVVTEM-YDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSM  131 (242)
T ss_dssp             CEEEEEECSCCGGGCEEEEEEEEETTEECC---CCCCEEEEEECC-SCCCEEEEES-CSEEETTCEEEEEEECTTS-CSE
T ss_pred             ceeEEEecCCCcccCeEEEEEEecCCcccc---CCcceEEEeecc-cCCCceEccC-CCccCCCCcEEEEEecCCC-CCE
Confidence            456899999999999999999988654332   345666666532 3467776655 4568899999999998765 458


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC---ceEEEEEEeeccC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG---HSITKARLRLEAP  545 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g---~~~~s~~l~V~~~  545 (1101)
                      +.|+++|..+..    ..........|.|.++...|+|.|+|.|.|...   ..+....|.|..+
T Consensus       132 ~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          132 FLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             EEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            999999865543    112334556999999999999999999998641   2233466777653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.14  E-value=1.5e-10  Score=102.16  Aligned_cols=90  Identities=14%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--EEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +|.|...+.++.+..|+.+.|.|.+.|.|.|.+.|++++  ..+....  ..........|.|.++...|+|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            577777788889999999999999999999999999999  7775443  233345567899999999999999999999


Q ss_pred             CCCceEEEEEEeec
Q psy8139         530 RAGHSITKARLRLE  543 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~  543 (1101)
                      ..|....++.|.|+
T Consensus        80 ~~G~~~~~~~l~V~   93 (93)
T 1wit_A           80 ELGEDEAIFEVIVQ   93 (93)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEC
Confidence            99988887777763

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.14  E-value=2.9e-10  Score=101.56  Aligned_cols=94  Identities=29%  Similarity=0.453  Sum_probs=80.4

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc-EEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|.+..+..|+++.|.|.+.|.|.+.+.|++++..+..... +.....++...|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            467788888888999999999999999999999999999998876543 4444455566899999999999999999999


Q ss_pred             CCCceEEEEEEeecc
Q psy8139         530 RAGHSITKARLRLEA  544 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~  544 (1101)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999988888887753

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.3e-10  Score=104.92  Aligned_cols=57  Identities=19%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      .|.+|+|.|...++..+..+.. .++.++++|.+|.|++.|.|+|.|+|..|.|+++.
T Consensus        34 ~i~~Y~I~y~~~~~~~~~~~~v-~~~~t~~~l~~L~p~T~Y~v~V~A~~~~g~s~p~~   90 (108)
T 2ee3_A           34 PVRLVRVTYVSSEGGHSGQTEA-PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLT   90 (108)
T ss_dssp             CCSEEEEEEEETTTCCBCCEEE-ETTCCEEEECSCCSSCEEEEEEEEECTTSCEEEEE
T ss_pred             CccEEEEEEEeCCCCceeEEEc-CCCcCEEEcCCCCCCCEEEEEEEEEeCCCcCCCcc
Confidence            4788888888776544433322 35778999999999999999999999999988763

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.13  E-value=4.2e-10  Score=116.79  Aligned_cols=132  Identities=12%  Similarity=0.093  Sum_probs=94.8

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV  484 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v  484 (1101)
                      +.+|.|.+++..|+|.|.|.+.+..+.....    ...+.+.   ..++.....+....+..|..+.+.|.+.|.|.|.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i  150 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQA----RLRLRVL---VPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSV  150 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEE----EEEEEEE---BCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEE
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeee----EEEEEEe---eeccceeeeeeeeeeeeccccceeeeccCCcCceE
Confidence            4579999999999999999999876643221    1222221   12333344556667788999999999999999999


Q ss_pred             EEEECCEEeecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         485 SWYKDGFEIFSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       485 ~W~~~g~~~~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +|++++..+.......... ....+.|.|.++...|.|.|+|.|.|..|.......+.|.
T Consensus       151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            9999987665432211100 0113479999999999999999999999987776655554

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.13  E-value=1.5e-10  Score=106.05  Aligned_cols=99  Identities=36%  Similarity=0.614  Sum_probs=80.9

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  423 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c  423 (1101)
                      ++.+|++|..+.+. .++.++++|+|.+|..+|+.+|.+|.|+++..+...|...........++++.+|.+++.|.|+|
T Consensus         5 p~~~P~~P~~l~~~-~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV   83 (111)
T 1x5y_A            5 SSGPTSAPQHLTVE-DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRV   83 (111)
T ss_dssp             CCSCCCCCEEEEEE-EECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEE
T ss_pred             CCCCCcCCCCCEEE-eccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEE
Confidence            45566666655444 67889999999999888887899999999988878898876554567889999999999999999


Q ss_pred             EEEecCCCCCCCCCCcceEE
Q psy8139         424 TAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       424 ~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      .|.|..|.+.++..+..+++
T Consensus        84 ~A~n~~G~s~~S~~~~~v~~  103 (111)
T 1x5y_A           84 VGVNIAGRSEPATLLQPVTI  103 (111)
T ss_dssp             EEEETTEECCCCCCSSCBCC
T ss_pred             EEEcCCcCCCCccCCCCEEe
Confidence            99999999888766554443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.13  E-value=4e-10  Score=118.45  Aligned_cols=173  Identities=12%  Similarity=0.122  Sum_probs=110.1

Q ss_pred             eecCceeEEccCCeEEEEEEEecc--CCCeEEEEECC--E---Eee-------------cCCcEEEEecC--CeeEEEEe
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDG--F---EIF-------------SSRRQRIVTDN--DISTLIIH  513 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g--~---~~~-------------~~~~~~~~~~~--~~~~l~I~  513 (1101)
                      ...|..+.+..|++++|.|.+.+.  +.+.+.|++..  .   .+.             ...++.+....  +..+|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            345677889999999999999875  56789999842  1   110             12445554322  45689999


Q ss_pred             ecCCCCCEEEEEEEEeCC--Cc--eEEEEEEeecc---------CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-C
Q psy8139         514 QAALMDEGEIKCTATNRA--GH--SITKARLRLEA---------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-P  578 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~~--g~--~~~s~~l~V~~---------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~  578 (1101)
                      ++..+|+|.|.|.+.+..  ..  ......|.|..         +|.....+  +....+..|..++|.|.+.|. |. +
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~--p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           85 SLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL--PSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             SCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC--CCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             cCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC--CCchhhccCCcceEEEEEeeecCCCe
Confidence            999999999999998851  11  11234677752         12211100  011122357889999999986 64 6


Q ss_pred             eeEEEE-CCeecCCCCceEEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         579 TARWLH-NGEPLTSGGRYEITHTDR----YLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       579 ~v~W~~-~g~~l~~~~~~~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .|.|.+ +|..+.......+...++    .+.|.|.....  .+.|+|.|.|..+....
T Consensus       163 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~--~~~ytC~v~~~~~~~~~  219 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM--GKEHRCIVKHENNKGGA  219 (230)
T ss_dssp             EEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT--TSCEEEEEECSSCTTTS
T ss_pred             EEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC--CCEEEEEEEECCCCCce
Confidence            999999 777664321111111111    34678877765  49999999998775433

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.13  E-value=6.9e-10  Score=98.69  Aligned_cols=89  Identities=18%  Similarity=0.391  Sum_probs=79.6

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...|.++.+..|+++.|.|.+.|. |.+.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|..|..
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   84 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED   84 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence            445678889999999999999997 9999999999999988888887667777899999999999999999999999999


Q ss_pred             EEEEEEeecc
Q psy8139         535 ITKARLRLEA  544 (1101)
Q Consensus       535 ~~s~~l~V~~  544 (1101)
                      ...+.|.|..
T Consensus        85 ~~~~~l~V~~   94 (97)
T 2bk8_A           85 SSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEEEEEe
Confidence            8888888864

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.12  E-value=1e-10  Score=104.53  Aligned_cols=57  Identities=32%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             CcceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         718 PVLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      +|.+|.|.|+..+.. .+.... .....++++|.+|.|++.|.|+|.|.|..|.|+++.
T Consensus        28 ~i~~Y~v~y~~~~~~~~~~~~~-~~~~~t~~~i~~L~p~t~Y~~~V~A~n~~g~s~p~~   85 (100)
T 3b83_A           28 PIEGILVTFGRKNDPSDETTVD-LTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVS   85 (100)
T ss_dssp             CCSEEEEEEEESSCTTTCEEEE-ECTTEEEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             cCCEEEEEEEECCCCCCceEEE-ECCcceEEEECCCCCCCEEEEEEEEEeCCCCCCCEE
Confidence            478888888866532 233222 236788999999999999999999999999977753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.8e-10  Score=103.20  Aligned_cols=94  Identities=26%  Similarity=0.438  Sum_probs=79.4

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.+...|.+..+..|+++.|.|.+.|.|.+.+.|++++..+.. ..++.+. .++  .|.|.++...|+|.|+|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-EQG--TLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC-TTC--CEEEESCCTTTCCEEEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc-CCC--EEEEccCCcccCEEEEEEEE
Confidence            4678888889999999999999999999999999999999988763 3333332 222  79999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCC
Q psy8139         529 NRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p  546 (1101)
                      |..|....++.|.|..+|
T Consensus        83 n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           83 SSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             CSSCCCBCCEEEEEESCC
T ss_pred             cCCCCEEEEEEEEEecCC
Confidence            999988888888887653

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3.1e-10  Score=105.62  Aligned_cols=97  Identities=21%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|.+|.++.+...+.++|.|+|.+|...++ .+.                                          +.+
T Consensus        17 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~-~i~------------------------------------------~~~   53 (123)
T 2edd_A           17 TPMLPPVGVQAVALTHDAVRVSWADNSVPKN-QKT------------------------------------------SEV   53 (123)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECSSSCSS-CCC------------------------------------------SCC
T ss_pred             CCCCCCcceEEEEcCCCeEEEEecCCCCCcc-ccc------------------------------------------CcC
Confidence            4678888888888888889998886643322 000                                          124


Q ss_pred             ceEEEEEEeCCC--CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         720 LGYLVEHRRTGS--PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       720 ~~Y~V~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      .+|.|.|+..+.  ..|..+.   ...++++|.+|.|+|.|.|+|+|.|..|.|++|....+.|.
T Consensus        54 ~~Y~v~y~~~~~~~~~~~~~~---~~~~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~  115 (123)
T 2edd_A           54 RLYTVRWRTSFSASAKYKSED---TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTY  115 (123)
T ss_dssp             CCEEEEEEETTCTTCCCCCEE---ESSSEEEEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECC
T ss_pred             ceEEEEEEECCCCCccEEEEe---CCceEEEecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEcc
Confidence            488888887643  2232221   45789999999999999999999999999988875544433

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.12  E-value=4.8e-11  Score=128.70  Aligned_cols=217  Identities=11%  Similarity=0.026  Sum_probs=77.5

Q ss_pred             eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC---e
Q psy8139         407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---K  483 (1101)
Q Consensus       407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~---~  483 (1101)
                      .|.|.++..+  +.|+|.+. ..|..    .+..+++.+... +..|.+...  ...+.+|..++|.|.+.|.+++   .
T Consensus        51 ~~~l~~v~~~--~~y~C~~~-~~~~~----~~~~v~l~V~~~-P~~v~I~~~--~~~~~~G~~~~LtC~v~g~~P~~~l~  120 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSN-CPDGQ----STAKTFLTVYWT-PERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLT  120 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEE-CSSCE----EEEECEEEECBC-CSCCCBCCC--CSBCCSSCCCEEEEEECCCBSTTTEE
T ss_pred             EEEEEecccC--CeEEEEEE-cCCcc----EEEEEEEEEecC-CCCCEEecC--CccccCCCCEEEEEEecCccCCCCcE
Confidence            5788888754  46999985 33321    233455555533 233333332  2447889999999999875443   5


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc--------eEEEEEEeeccCCccccCCCCC
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH--------SITKARLRLEAPPTIRLPKQYE  555 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~--------~~~s~~l~V~~~p~~~~~~~~~  555 (1101)
                      |+|++++..+.....   .......+|.+.....++.+.|+|.|.|..+.        .+....|.|..+|........ 
T Consensus       121 itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-  196 (291)
T 1mq8_A          121 VVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-  196 (291)
T ss_dssp             EEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------
T ss_pred             EEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-
Confidence            899999977653220   11122346666666666777999999997653        233467888887543211111 


Q ss_pred             CCeEEeeCCEEEEEEEEeecCCC---eeEEEECCeecCCCCceEEEeecceEEEEEccC---CC--CCCeEEEEEEEeCC
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPP---TARWLHNGEPLTSGGRYEITHTDRYLNLRISDA---RR--ADRGEYQAHGVNSL  627 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~---~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l---~~--~~~y~y~c~A~N~~  627 (1101)
                       ...+.+|+.++|.|.+.|.+++   .+.|.++|..+....    ...++  .+++..+   ..  +..|.|+|.|.|..
T Consensus       197 -p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~  269 (291)
T 1mq8_A          197 -PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVILGN  269 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEEeCC
Confidence             1256789999999999997554   699999998876421    11121  2222222   22  34678888888755


Q ss_pred             CCceeEEEEEEecCCCC
Q psy8139         628 GEDVASFLVTVTDRPLP  644 (1101)
Q Consensus       628 G~~~~s~~l~v~~~P~~  644 (1101)
                      ........++|...|.|
T Consensus       270 ~~~~~~~~l~v~~~~~~  286 (291)
T 1mq8_A          270 QSQETLQTVTIYSFPAP  286 (291)
T ss_dssp             -----------------
T ss_pred             cceEEEEEEEEEcCCCc
Confidence            55556667777765544

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.2e-10  Score=104.71  Aligned_cols=97  Identities=30%  Similarity=0.553  Sum_probs=78.8

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      .+|++|..+.+. .++.++++|+|.+|..+|+.+|.+|.|+++..+...|..........+.++|.+|.+++.|.|+|.|
T Consensus         6 ~~P~~P~~l~~~-~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2yuw_A            6 SGTSPPTLLTVD-SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKA   84 (110)
T ss_dssp             CCSCCCEEEEEE-EECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCccEEE-eccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEE
Confidence            444555444333 6778999999999987888899999999998888889887655456789999999999999999999


Q ss_pred             EecCCCCCCCCCCcceEE
Q psy8139         426 ENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       426 ~n~~G~~~~s~~s~~vtv  443 (1101)
                      .|..|.+.++..+..+++
T Consensus        85 ~n~~G~s~~S~~~~~v~~  102 (110)
T 2yuw_A           85 VNAAGASEPKYYSQPILV  102 (110)
T ss_dssp             EETTEECCCEECSSCEEC
T ss_pred             EcCCcCCCCcCCCCCEEe
Confidence            999999888766555543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.11  E-value=1.7e-10  Score=120.28  Aligned_cols=132  Identities=15%  Similarity=0.196  Sum_probs=89.7

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-cCCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~-  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|.......+..+.+.+...+..+|.+...+....+..|+.++|.|.+.| .|.+ 
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~  153 (218)
T 3s96_B           74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGV  153 (218)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             eEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCe
Confidence            45799999999999999999999876210111123355666555557787776555555667899999999988 5666 


Q ss_pred             eEEEEECCEEeecCCcEE--EEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         483 KVSWYKDGFEIFSSRRQR--IVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~--~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      .++|+++|..+.......  ....+.   .+.|.|......|.|.|+|.|.|..+....
T Consensus       154 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  212 (218)
T 3s96_B          154 TVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK  212 (218)
T ss_dssp             EEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence            899999999876421110  011111   124778888788899999999998865443

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.11  E-value=4.9e-10  Score=109.44  Aligned_cols=101  Identities=28%  Similarity=0.440  Sum_probs=86.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.|...+.++.+..|+++.|.|.+.|.|.+.+.|++++..+....++.+... .+...|.|.++...|+|.|+|.|.
T Consensus        39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            4678888888899999999999999999999999999999999987777776543 445699999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCcccc
Q psy8139         529 NRAGHSITKARLRLEAPPTIRL  550 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~~  550 (1101)
                      |..|.....+.|.|..+|.+..
T Consensus       119 N~~G~~~~~~~l~V~~~p~~~~  140 (154)
T 1fhg_A          119 NSLGEATCTAELLVETMGKEGE  140 (154)
T ss_dssp             ETTEEEEEEEEEEEECC-----
T ss_pred             ECCCeEEEEEEEEEeCcCcCCC
Confidence            9999998899999998876643

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.11  E-value=4.5e-10  Score=115.34  Aligned_cols=134  Identities=11%  Similarity=0.064  Sum_probs=92.3

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCC---
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT---  481 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~---  481 (1101)
                      ...|.|.+++..|+|.|+|.|.|..|..     +..+.+.+...| ..|.+  .+. ..+..|+.++|.|.+.|.++   
T Consensus        53 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-----~~~~~l~V~~~p-~~~~~--~~~-~~~~~G~~~~L~C~~~~~~p~~~  123 (202)
T 1vca_A           53 TSTLTMNPVSFGNEHSYLCTATCESRKL-----EKGIQVEIYSFP-KDPEI--HLS-GPLEAGKPITVKCSVADVYPFDR  123 (202)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTEEE-----EEEEEEEEEBCC-SCCEE--EES-SCEETTSCEEEEEEEEEEBSGGG
T ss_pred             ccEEEECcCCHHHCEEEEEEEEECCceE-----eeEEEEEEEeCC-CCCEe--CCc-eEEcCCCCEEEEEEECCcCCCCC
Confidence            3569999999999999999999987642     234555554321 12222  233 56889999999999988643   


Q ss_pred             CeEEEEECCEEeecCCcEEEE----ecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-------EEEEEEeeccCCc
Q psy8139         482 PKVSWYKDGFEIFSSRRQRIV----TDNDISTLIIHQAALMDEGEIKCTATNRAGHS-------ITKARLRLEAPPT  547 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~~~~~----~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-------~~s~~l~V~~~p~  547 (1101)
                      +.++|++++..+.........    .......|+|......|.|.|+|.|.|..|..       ..+..|.|.++|.
T Consensus       124 ~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            379999999877532100000    01112356788888889999999999988762       4467888888874

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.2e-10  Score=106.37  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC--ceeecccccCccEEEEcCCCCCceEEEEE
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY--WVRASPHMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      +.|+.++.......++.+++.|+|++|..   +.|.+|.|.|+..+...  +.... .....+.++|.+|.|++.|.|+|
T Consensus        16 ~~P~~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V   91 (119)
T 2ee2_A           16 DAPSEAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQ-VTSQEYSARLENLLPDTQYFIEV   91 (119)
T ss_dssp             CCCCCCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEE-EETTCSEEEECSCCTTCEEEEEE
T ss_pred             cCCCCCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEE-cCCCEeEEEECCCCCCCEEEEEE
Confidence            34443332223345678999999999865   67999999998876432  22222 22566799999999999999999


Q ss_pred             EEEcCCccCCCCCCCCcEE
Q psy8139         763 TAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +|.|..|.|++|....+.|
T Consensus        92 ~A~n~~G~g~~S~~~~~~T  110 (119)
T 2ee2_A           92 GACNSAGCGPPSDMIEAFT  110 (119)
T ss_dssp             EEECSSSCCCCCCCEEEEC
T ss_pred             EEEcCCccCCCCCCEEEEC
Confidence            9999999998876655444

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-10  Score=108.17  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             CCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCC---CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         698 SLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGS---PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ..+.+++.|+|++|. ...++.|++|.|.|+..+.   ..|.....  .+.++++|.+|.|++.|.|+|.|+|..|.|++
T Consensus        30 ~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~  107 (124)
T 2dbj_A           30 NESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVG--QNGSRARISVQVHNATCTVRIAAVTRGGVGPF  107 (124)
T ss_dssp             CSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEEEE--STTSCEEEECCCSSSEEEECEEEEESSCBCCC
T ss_pred             cCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEEeC--CCcceEEecCCCCCCEEEEEEEEECCCccCCC
Confidence            467899999999983 3455679999999974332   34443322  56789999999999999999999999999998


Q ss_pred             CCCCCcEE
Q psy8139         774 GPLSEPLT  781 (1101)
Q Consensus       774 S~~s~~~t  781 (1101)
                      |....+.|
T Consensus       108 S~~~~~~T  115 (124)
T 2dbj_A          108 SDPVKIFI  115 (124)
T ss_dssp             CCCEEEEC
T ss_pred             CCCEEEEc
Confidence            86654444

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=7.6e-10  Score=102.53  Aligned_cols=100  Identities=28%  Similarity=0.498  Sum_probs=83.9

Q ss_pred             ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       543 ~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      ..+|.+..+......+.+..|+.+.|.|.+.|.|.|.+.|+++|..+. ..++.+...+....|.|.++...|.|.|+|.
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   97 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELS   97 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence            346666555444566789999999999999999999999999999987 4456666666678899999999999999999


Q ss_pred             EEeCCCCceeEEEEEEecCCC
Q psy8139         623 GVNSLGEDVASFLVTVTDRPL  643 (1101)
Q Consensus       623 A~N~~G~~~~s~~l~v~~~P~  643 (1101)
                      |.|..|.......|.|.++|+
T Consensus        98 a~N~~G~~~~~~~l~V~~~P~  118 (118)
T 2e7c_A           98 VQIENMKDTATIRIRVVEKAG  118 (118)
T ss_dssp             EECSSCEECCEEEEEEECCCC
T ss_pred             EEeCCCeEEEEEEEEEEcCCC
Confidence            999999888899999987763

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=2e-10  Score=103.53  Aligned_cols=92  Identities=25%  Similarity=0.432  Sum_probs=71.7

Q ss_pred             CCCCCcccCCCCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEE
Q psy8139         686 PPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  764 (1101)
Q Consensus       686 ~p~~p~~~~~~~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A  764 (1101)
                      ||++|..+ .....+.+++.|+|++|. ...++.|.+|.|.|+..+...|....   ...++++|.+|.|++.|.|+|.|
T Consensus         8 pp~~P~~l-~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T 2edy_A            8 PSGFPQNL-HVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNI---TTDTRFTLTGLKPDTTYDIKVRA   83 (103)
T ss_dssp             CSCCCEEE-ECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEEEE---ESSSCCEECSCCTTCCEEEECCE
T ss_pred             CCCCCeee-EEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEEEc---CCcceEEEcCCCCCCEEEEEEEE
Confidence            34444433 344678899999999984 34456799999999988776555442   56788999999999999999999


Q ss_pred             EcCCccCCCCCCCCcEE
Q psy8139         765 ENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       765 ~n~~G~g~~S~~s~~~t  781 (1101)
                      .|..|.|++|....+.|
T Consensus        84 ~n~~G~g~~S~~~~~~T  100 (103)
T 2edy_A           84 WTSKGSGPLSPSIQSRT  100 (103)
T ss_dssp             ECSSCBCCCCCCCCCCC
T ss_pred             ECCCCCCCCCCCEEEEe
Confidence            99999999887665544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=2.7e-10  Score=104.14  Aligned_cols=98  Identities=32%  Similarity=0.475  Sum_probs=84.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ..+|.|...|.++.+..|+++.|.|.+.|.|.+.+.|++++..+.. ..++.+... ++...|.|.++...|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4678888888899999999999999999999999999999988775 455655544 44458999999999999999999


Q ss_pred             EeCCCceEEEEEEeeccCCc
Q psy8139         528 TNRAGHSITKARLRLEAPPT  547 (1101)
Q Consensus       528 ~n~~g~~~~s~~l~V~~~p~  547 (1101)
                      .|..|.....+.|.|..+|.
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSC
T ss_pred             EECCCeEEEEEEEEEECCCC
Confidence            99999988888888887664

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.09  E-value=1.3e-09  Score=116.70  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=91.1

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCC-------CCCCCCCcceEEEeccCCC-----------CCCeeeecCceeEEccC
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGF-------SEPGPLSEPLTVTYQRSPA-----------AAPSFIRALHDTTALED  467 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~-------~~~s~~s~~vtv~~~~~~~-----------~~P~~~~~p~~~~v~~g  467 (1101)
                      .+|+|.++++.|+|.|.|.|.|....       ...........+.+...+.           .+|.+...|..+.+.+|
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  164 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG  164 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred             EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence            46999999999999999999986110       0001111234455543222           15677788899999999


Q ss_pred             CeEEEEEEEeccCC-CeEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         468 EKVEFTVQVEGIPT-PKVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       468 ~~v~L~C~~~g~p~-~~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      ++++|.|.+.+.|. +.+.|++.  +....            ...++.+...+...+|+|.++..+|+|.|.|.|.|..+
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            99999999998876 89999982  22111            22455555566667899999999999999999988644

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.09  E-value=1.6e-09  Score=114.45  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCC--------CCCeeeecCceeEEccCCeEEEEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA--------AAPSFIRALHDTTALEDEKVEFTVQV  476 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~--------~~P~~~~~p~~~~v~~g~~v~L~C~~  476 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|.......+....+.+...+.        ..+.+...|..+.+.+|++++|.|.+
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  151 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY  151 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE
Confidence            4579999999999999999999986632111111223344432111        01256667888889999999999999


Q ss_pred             eccCCCeEEEEECC-----EEe---------ecCCcEEEE--ecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         477 EGIPTPKVSWYKDG-----FEI---------FSSRRQRIV--TDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       477 ~g~p~~~v~W~~~g-----~~~---------~~~~~~~~~--~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .+.|.+.+.|++++     ..+         ....++.+.  ......+|+|.++...|+|.|+|.|.|..
T Consensus       152 ~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          152 ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            99999999999953     111         112344443  23445689999999999999999999974

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.08  E-value=1.8e-10  Score=116.67  Aligned_cols=115  Identities=17%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             cceEEEcC-ccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCC--------------CCeee----ecCce---e
Q psy8139         405 DTELMVSG-LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA--------------APSFI----RALHD---T  462 (1101)
Q Consensus       405 ~~~l~i~~-L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~--------------~P~~~----~~p~~---~  462 (1101)
                      +.+|.|.+ ++..|+|.|+|.|.|..|...     ..+++.+......              +|.+.    .....   .
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTY-----LYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD  117 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCCCC-----EEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEEC
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCcEE-----EEEEEEEecccccccccccccccccCCccccccccccccccccce
Confidence            46899999 999999999999999888621     1122222111000              01110    00011   1


Q ss_pred             EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      .+..|+++.|.|.+   |.|.++|+++|..+.....       ....|.|.++...|+|.|+|.|.|..|..
T Consensus       118 ~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          118 GSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            23489999999998   7889999999998864322       23479999999999999999999988765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.08  E-value=1.4e-10  Score=105.05  Aligned_cols=94  Identities=24%  Similarity=0.419  Sum_probs=84.6

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.|...|.++.+..|+++.|.|.+.|.|.|.+.|+++|..+....++.+...+....|.|.++...|+|.|+|.|.|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            46788888999999999999999999999999999999999888777788777776678999999999999999999999


Q ss_pred             CCCceEEEEEEeec
Q psy8139         530 RAGHSITKARLRLE  543 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~  543 (1101)
                      ..|....++.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998888887774

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.08  E-value=2.5e-10  Score=104.69  Aligned_cols=94  Identities=23%  Similarity=0.417  Sum_probs=69.8

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEec-CCCceEEcCccc-----------cccceEEEcC
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPYWVRASPHM-----------VEDTELMVSG  412 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~-~~~~w~~~~~~~-----------~~~~~l~i~~  412 (1101)
                      +.+|++|.+    ..++.++++|+|.+|.++| ++|++|.|+++.. ....|.......           ....+++|.+
T Consensus         3 ~~pP~~P~v----~~~~~~sv~L~W~~P~~~G-~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~   77 (115)
T 2ic2_A            3 TYPPTPPNV----TRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD   77 (115)
T ss_dssp             CCCCCCCEE----EECC---EEEEEEEECCSS-CCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECS
T ss_pred             cCCCCcCEe----EEEeCCEEEEEEcCCCCCC-CCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCC
Confidence            345666664    3678999999999997665 7999999999987 456787654322           2335789999


Q ss_pred             ccCCccEEEEEEEEecCCCCCCCCCCcceEE
Q psy8139         413 LEPGWRYQFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       413 L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      |.|++.|.|+|.|.|..|.+.+|..|..+.+
T Consensus        78 L~p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~  108 (115)
T 2ic2_A           78 LKPQHTYRFRILAVYSNNDNKESNTSAKFYL  108 (115)
T ss_dssp             CCSSEEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             CCCCCEEEEEEEEEeCCCCCCCCCCCCCEEe
Confidence            9999999999999999999888877776655

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.08  E-value=3.7e-10  Score=100.29  Aligned_cols=84  Identities=24%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|++|.++.+..++.+++.|+|.+|.                                                  +.+.
T Consensus         4 ~~~~P~~l~v~~~t~~Si~lsW~~p~--------------------------------------------------~~i~   33 (97)
T 3qht_C            4 VSSVPTKLEVVAATPTSLLISWDASS--------------------------------------------------SSVS   33 (97)
T ss_dssp             -CCSSSSCEEEEEETTEEEEECCCCC--------------------------------------------------SSCC
T ss_pred             CCCCCCceEEEecCCCEEEEEEeCCC--------------------------------------------------CCCC
Confidence            57888888888888888888888642                                                  2477


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +|.|.|...++..+........+.++++|.+|.|++.|.|+|.|.|..|.|++|
T Consensus        34 ~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~~~~G~gp~s   87 (97)
T 3qht_C           34 YYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYYSYYDLYYS   87 (97)
T ss_dssp             EEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeCCccCCCC
Confidence            888888876654322222233678999999999999999999999999998765

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.07  E-value=5.6e-10  Score=116.70  Aligned_cols=135  Identities=13%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CCC-
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTP-  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~-  482 (1101)
                      ..+|.|.++++.|+|.|.|.+.|..|............+.+...+..+|.+...+....+..|+.++|.|.+.|. |.| 
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  159 (222)
T 1q9r_B           80 ILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV  159 (222)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCC
T ss_pred             eEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCC
Confidence            458999999999999999999987652110011122455555444456776554434446789999999999985 888 


Q ss_pred             eEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         483 KVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      .++|+++|..+...........+   ..+.|.|.++...| |.|+|.|.|..|.......+
T Consensus       160 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          160 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             EEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            99999988654321111111111   12368899988889 99999999998876554433

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=107.63  Aligned_cols=83  Identities=17%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  772 (1101)
                      ...++.+++.|+|++|. +.++.|.+|.|+|+..+..   .|.....  ...++++|.+|.|++.|.|+|.|.|..|.|+
T Consensus        27 ~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  103 (121)
T 2dlh_A           27 ARMLSSTTILVQWKEPE-EPNGQIQGYRVYYTMDPTQHVNNWMKHNV--ADSQITTIGNLVPQKTYSVKVLAFTSIGDGP  103 (121)
T ss_dssp             ECCCSSSBCCEEEECCS-CCCSCEEEEEEECCSCTTSCTTTSCCCCC--SSCSEECCBSCCSSCEEEEEEEEEESSCBCC
T ss_pred             EEecCCCEEEEEECCCC-CCCCcEeEEEEEEEeCCCCCccccEEEec--CCceEEEecCCCCCCEEEEEEEEEeCCccCC
Confidence            34568899999999985 4556799999999876543   3333222  5678999999999999999999999999988


Q ss_pred             CCCCCCcEE
Q psy8139         773 PGPLSEPLT  781 (1101)
Q Consensus       773 ~S~~s~~~t  781 (1101)
                      +|....+.|
T Consensus       104 ~S~~~~~~T  112 (121)
T 2dlh_A          104 LSSDIQVIT  112 (121)
T ss_dssp             CCCCEEEEC
T ss_pred             CCCCEEEEC
Confidence            876554443

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.07  E-value=3.7e-10  Score=96.82  Aligned_cols=82  Identities=26%  Similarity=0.410  Sum_probs=71.2

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA  538 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~  538 (1101)
                      +.++.+.+|+++.|.|.+.+ |.|.|+|+++|..+..+.++.+...++...|.|.++...|+|.|+|.|    |....++
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEE
Confidence            45678999999999999866 888999999999999888898888888889999999999999999987    4455677


Q ss_pred             EEeeccC
Q psy8139         539 RLRLEAP  545 (1101)
Q Consensus       539 ~l~V~~~  545 (1101)
                      .|.|..|
T Consensus        78 ~l~V~eP   84 (84)
T 2lu7_A           78 LVSVEEP   84 (84)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            7887654

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.07  E-value=1.3e-10  Score=109.05  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CCCCCCceEEEEeeCCCC-CCCCCcceEEEEEEeCCCCCce-------eecccccCccEEEEcCCCCCceEEEEEEEEcC
Q psy8139         696 SPSLDRDVFTIRWEPPEY-DGGSPVLGYLVEHRRTGSPYWV-------RASPHMVEDTELMVSGLEPGWRYQFRITAENV  767 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~-~~~~~i~~Y~V~~~~~~~~~~~-------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  767 (1101)
                      ...++.+++.|+|++|.. ..++.|.+|.|.|+..+...+.       .........++++|.+|.|++.|.|+|.|+|.
T Consensus        23 ~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  102 (125)
T 1uen_A           23 VNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNG  102 (125)
T ss_dssp             EEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEEEEEES
T ss_pred             EEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEEEeCCCCCCCEEEEEEEEecC
Confidence            335678899999999843 3456799999999987654431       11122367789999999999999999999999


Q ss_pred             CccCCCCCCCCcEE
Q psy8139         768 VGFSEPGPLSEPLT  781 (1101)
Q Consensus       768 ~G~g~~S~~s~~~t  781 (1101)
                      .|.|++|....+.|
T Consensus       103 ~G~g~~S~~~~~~T  116 (125)
T 1uen_A          103 KGEGPASPDRVFNT  116 (125)
T ss_dssp             SCEEEECCCEEEEC
T ss_pred             CCCCCCCCCEEEEC
Confidence            99988876554443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.06  E-value=1.5e-09  Score=111.78  Aligned_cols=165  Identities=12%  Similarity=0.116  Sum_probs=105.6

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEECC-----EEee-------cCCcEEEEec---CCeeEEEEeecCCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-----FEIF-------SSRRQRIVTD---NDISTLIIHQAALMDE  520 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g-----~~~~-------~~~~~~~~~~---~~~~~l~I~~l~~~d~  520 (1101)
                      ...|..+.+..|++++|.|.+.+.+ +.+.|++..     ..+.       ...++.+..+   .+..+|.|.++..+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            4456778899999999999998755 489999842     1111       2356666644   5567899999999999


Q ss_pred             EEEEEEEEeCCCc-----------eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECCe
Q psy8139         521 GEIKCTATNRAGH-----------SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNGE  587 (1101)
Q Consensus       521 g~Y~C~a~n~~g~-----------~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g~  587 (1101)
                      |.|.|.+.+..+.           ....+.|.|...+....+|.    +.+..+ .+.|.|.+.+. |. +.+.|.++ .
T Consensus        84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~----v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~  157 (207)
T 1ypz_E           84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS----VFIMKN-GTNVACLVKDFYPKEVTISLRSS-K  157 (207)
T ss_dssp             EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCE----EEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred             EEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCe----EEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence            9999999987431           11235677765322211221    122222 26899999975 43 79999998 6


Q ss_pred             ecCCCCceEEEeecceEEEEEccCCC-CCCeEEEEEEEeCCCC
Q psy8139         588 PLTSGGRYEITHTDRYLNLRISDARR-ADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       588 ~l~~~~~~~~~~~~~~~sl~i~~l~~-~~~y~y~c~A~N~~G~  629 (1101)
                      .+...........  .+.+.+..+.. .+.+.|+|.+.|..+.
T Consensus       158 ~l~~~~~~~~~~~--~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          158 KIVEFDPAIVISP--SGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             EEEECCCEEEECT--TSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             cccCCccceEEcC--CCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            6543221111111  22333333333 5679999999998764

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.06  E-value=6.1e-10  Score=100.85  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=41.9

Q ss_pred             ceEEEEEEeC-CCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         720 LGYLVEHRRT-GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       720 ~~Y~V~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      .+|.|.|+.. +...|..      ..+.++|.+|.|++.|.|+|+|.|..|.|++|....+.|.
T Consensus        42 ~~Y~v~y~~~~~~~~~~~------~~~~~~i~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~~T~   99 (107)
T 1x5a_A           42 LSYELHVLNQDEEWHQMV------LEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS   99 (107)
T ss_dssp             CEEEEEEECSSCEEEEEE------SSSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             eEEEEEEEeCCCCceEEE------ecceEEECCCCCCCEEEEEEEEECCCccCCCCCCEEEEEC
Confidence            7788887765 2112211      1223999999999999999999999999999877665443

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.05  E-value=6.9e-10  Score=102.28  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             CCCCCCCCcccCCCCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139         683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                      ..++|+.++....... +.++|.|+|++|. ...++.|++|.|.|+..+...+....   ...+.+.+. |.|++.|.|+
T Consensus        14 ~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~---~~~~~~~~~-L~~~t~Y~~~   88 (117)
T 1wj3_A           14 KKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN---TNKTSAELV-LPIKEDYIIE   88 (117)
T ss_dssp             SCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEE---ESSSEEEEE-CCCSSCEEEE
T ss_pred             cCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCeEEe---CCCcEEEEE-CCCCCEEEEE
Confidence            3455664444333333 7789999999974 34667799999999988765553222   345678888 9999999999


Q ss_pred             EEEEcCCccCCCCCCCCcE
Q psy8139         762 ITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       762 V~A~n~~G~g~~S~~s~~~  780 (1101)
                      |.|+|..|.|++|....+.
T Consensus        89 V~A~n~~G~Gp~S~~v~~~  107 (117)
T 1wj3_A           89 VKATTDGGDGTSSEQIRIP  107 (117)
T ss_dssp             EEEEESSCCCCBCCCEEEC
T ss_pred             EEEECCCccCCCCCCEEEE
Confidence            9999999999987654433

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.05  E-value=2.1e-09  Score=115.14  Aligned_cols=140  Identities=12%  Similarity=0.104  Sum_probs=96.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC----------CCCCCeeeecCceeEEccCCeEEEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS----------PAAAPSFIRALHDTTALEDEKVEFTV  474 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~----------~~~~P~~~~~p~~~~v~~g~~v~L~C  474 (1101)
                      ..+|.|.++++.|+|.|.|.|.|..+... ...+....+.+...          ...+|.+...|....+.+|++++|.|
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  163 (257)
T 3gkz_A           85 QVYLQLKSVSSEDTATYYCSYFDSDDYAM-EYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTC  163 (257)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTC-EEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEE
T ss_pred             eEEEEECCCChhhCEEEEEEEecCCCcce-eEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEE
Confidence            34799999999999999999999732221 11122344444422          12346677778889999999999999


Q ss_pred             EEeccCCC-eEEEEEC--CEEee------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EE
Q psy8139         475 QVEGIPTP-KVSWYKD--GFEIF------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KA  538 (1101)
Q Consensus       475 ~~~g~p~~-~v~W~~~--g~~~~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~  538 (1101)
                      .+.+.|.+ .+.|++.  +....            ...++.....+...+|+|.++..+|+|.|.|.|.+....... ..
T Consensus       164 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt  243 (257)
T 3gkz_A          164 SASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGT  243 (257)
T ss_dssp             EESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             EEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCE
Confidence            99998887 8999983  22111            024555555566678999999999999999999875433222 24


Q ss_pred             EEeeccC
Q psy8139         539 RLRLEAP  545 (1101)
Q Consensus       539 ~l~V~~~  545 (1101)
                      .|.|...
T Consensus       244 ~l~v~~~  250 (257)
T 3gkz_A          244 KLEIKRA  250 (257)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            5666543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.05  E-value=1.4e-10  Score=120.20  Aligned_cols=130  Identities=16%  Similarity=0.137  Sum_probs=93.6

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc--CCC
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI--PTP  482 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~--p~~  482 (1101)
                      ..+|.|.++++.|+|.|+|.|.|..|...   .+..+.+.+...+..+|.+...+....+..|+.++|.|.+.|.  |.+
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~---~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  143 (211)
T 3tv3_L           67 TASLTVSGLQTDDEAVYYCGSLVGNWDVI---FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAV  143 (211)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTTEEE---ECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCC
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCCcee---ECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCe
Confidence            45799999999999999999999876211   1233556665455577888777766666689999999999885  357


Q ss_pred             eEEEEECCEEeecCCcE--EEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         483 KVSWYKDGFEIFSSRRQ--RIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       483 ~v~W~~~g~~~~~~~~~--~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      .+.|+++|..+......  .....++    .+.|.|.++...|.|.|+|.|.|..+....+
T Consensus       144 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          144 TVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  204 (211)
T ss_dssp             EEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred             EEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence            89999999987542110  0111111    1468898888889999999999988655443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.05  E-value=8.3e-10  Score=99.42  Aligned_cols=97  Identities=27%  Similarity=0.410  Sum_probs=82.3

Q ss_pred             eccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       542 V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      +..+|.+..++   ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+...+|.|.++...|.|.|+|
T Consensus         5 ~~~~P~~~~~~---~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            5 LDHAPRITLRM---RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             TCEEEEEEECC---CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCCEEEeCC---cceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEE
Confidence            33455554443   345788999999999999999999999999999988878887777777899999999999999999


Q ss_pred             EEEeCCCCceeEEEEEEecC
Q psy8139         622 HGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       622 ~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      .|.|..|.......|.|.+.
T Consensus        82 ~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           82 VCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEEETTEEEEEEEEEEEECC
T ss_pred             EEEeCCCcEEEEEEEEEECC
Confidence            99999999888888888754

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.05  E-value=2.9e-10  Score=103.45  Aligned_cols=95  Identities=24%  Similarity=0.410  Sum_probs=72.1

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...+.+..+..|+++.|.|.+.|.|.+.+.|++++..+.....+.....+  ..|.|.++...|+|.|+|.|.|.
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~   86 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSV   86 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTT--TEEEECSCCGGGCEEEEEEEC--
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCC--cEEEEeecCcccCEEEEEEEEeC
Confidence            6788888888999999999999999999999999999999888766665554333  48999999999999999999999


Q ss_pred             CCceEEEEEEeeccCCc
Q psy8139         531 AGHSITKARLRLEAPPT  547 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~  547 (1101)
                      .|.....+.|.|..+|.
T Consensus        87 ~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           87 LGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             --CEEEEEEEEEEC---
T ss_pred             CCceEEEEEEEEeCCCc
Confidence            99999999999987664

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.04  E-value=9.6e-10  Score=100.33  Aligned_cols=98  Identities=34%  Similarity=0.489  Sum_probs=76.5

Q ss_pred             ccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       341 v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      ...+|.+|..+.++   ..++.++++|+|.+|..+++.+|.+|.|+++..+...|.....  .....++|.+|.+++.|.
T Consensus         5 ~~~~P~~P~~~~~~---~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~   79 (110)
T 2crz_A            5 SSGPPGPCLPPRLQ---GRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYS   79 (110)
T ss_dssp             CCCCCCCCCCCEEC---SCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEE
T ss_pred             cCCCCCCCCCceec---cccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEe--CCcEEEEECCcCCCCEEE
Confidence            34556666666653   2567889999999987788889999999999877777876542  456789999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCcceEEEec
Q psy8139         421 FRITAENVVGFSEPGPLSEPLTVTYQ  446 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s~~s~~vtv~~~  446 (1101)
                      |+|.|.|..|.+.+|   ..+.+...
T Consensus        80 frV~A~n~~G~g~~S---~~~~~~T~  102 (110)
T 2crz_A           80 FRLRAANKMGFGPFS---EKCDITTA  102 (110)
T ss_dssp             ECCEEECSSCBCCCC---CCEEEECC
T ss_pred             EEEEEEcCCccCCCC---CccccccC
Confidence            999999999988766   34444433

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.04  E-value=1.7e-09  Score=113.94  Aligned_cols=170  Identities=14%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeE--EEEECC-----EEe-----ec-----------CCcEEEEec--CCeeEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKV--SWYKDG-----FEI-----FS-----------SRRQRIVTD--NDISTLI  511 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v--~W~~~g-----~~~-----~~-----------~~~~~~~~~--~~~~~l~  511 (1101)
                      |..+.+..|++++|.|.+.+.+  ...+  .|++..     ..+     ..           ..++.+...  .+..+|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            3346789999999999997632  2344  999731     111     00           135555443  3556899


Q ss_pred             EeecCCCCCEEEEEEEEeCCC--------ceEEEEEEeecc----CCccc-cCCCCCCCeEEeeCCEEEEEEEEeecC--
Q psy8139         512 IHQAALMDEGEIKCTATNRAG--------HSITKARLRLEA----PPTIR-LPKQYEDGLLFEMGEIIKLKVSMAGMP--  576 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g--------~~~~s~~l~V~~----~p~~~-~~~~~~~~~~v~~g~~~~l~c~~~g~p--  576 (1101)
                      |.++..+|+|.|.|.+.+..+        .......|.|..    +|.+. .++.    ..+..|..+.|.|.+.+.+  
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~----~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPS----SKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-----------CEEEEEEEEEEEBSS
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEeccc----ccccCCCcEEEEEEEeeEeCC
Confidence            999999999999999997631        122234566652    33332 1211    1345689999999999854  


Q ss_pred             CCeeEEEECCeecCC---------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         577 PPTARWLHNGEPLTS---------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       577 ~~~v~W~~~g~~l~~---------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .+.+.|.+++..+..         ++.+.+     .+.|.|......+ |.|+|.|.|..+.......+.+
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             CeEEEEEECCEecceeeccceeCCCCCEEE-----EEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            346889998864321         112221     3468888888778 9999999998877655554443

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=99.04  E-value=5.6e-10  Score=103.37  Aligned_cols=87  Identities=24%  Similarity=0.293  Sum_probs=65.3

Q ss_pred             ecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCC
Q psy8139         639 TDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP  718 (1101)
Q Consensus       639 ~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~  718 (1101)
                      ..+|.+|.++.+..++.++|.|+|.+|.                                                  +.
T Consensus        26 ~tp~~~P~~l~v~~~t~~Si~lsW~~p~--------------------------------------------------~~   55 (121)
T 2ocf_D           26 GSVSDVPTKLEVVAATPTSLLISWDAPA--------------------------------------------------VT   55 (121)
T ss_dssp             ---CCSCEEEEEEEECSSCEEEEEECCS--------------------------------------------------SC
T ss_pred             cCCCCCCCccEEEecCCCEEEEEEcCCC--------------------------------------------------CC
Confidence            3567899999999888888888888653                                                  12


Q ss_pred             cceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         719 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       719 i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      |.+|.|.|...++..+........+.++++|.+|.|++.|.|+|.|.|..|.|++|.
T Consensus        56 i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A~~~~G~g~~Ss  112 (121)
T 2ocf_D           56 VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGS  112 (121)
T ss_dssp             CCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEEECCHHHHHHSC
T ss_pred             CcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeCCCccCCCC
Confidence            677888887766543222222235778999999999999999999999999988753

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.04  E-value=1.8e-09  Score=114.25  Aligned_cols=170  Identities=13%  Similarity=0.114  Sum_probs=109.0

Q ss_pred             CceeEEccCCeEEEEEEEeccCC----CeEEEEECC-----EEe---e----------------cCCcEEEEec--CCee
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPT----PKVSWYKDG-----FEI---F----------------SSRRQRIVTD--NDIS  508 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~----~~v~W~~~g-----~~~---~----------------~~~~~~~~~~--~~~~  508 (1101)
                      |..+.+.+|++++|.|.+.+.+.    ..+.|++..     ..+   .                ...++.+...  .+..
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            45667899999999999987663    489999832     111   1                1234544432  4456


Q ss_pred             EEEEeecCCCCCEEEEEEEEeCCCc-------------eEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEEEEE
Q psy8139         509 TLIIHQAALMDEGEIKCTATNRAGH-------------SITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKLKVS  571 (1101)
Q Consensus       509 ~l~I~~l~~~d~g~Y~C~a~n~~g~-------------~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l~c~  571 (1101)
                      +|.|.+++.+|+|.|.|.+.+..+.             ......|.|..    +|.+...+.   ...+..|..+.|.|.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~  163 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCL  163 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECC---CCCC--TTEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECC---ChhhccCCcEEEEEE
Confidence            8999999999999999999876320             11123566642    233321111   112345899999999


Q ss_pred             Eee-cCC-CeeEEEECCeecCC---------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         572 MAG-MPP-PTARWLHNGEPLTS---------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       572 ~~g-~p~-~~v~W~~~g~~l~~---------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      +.+ .|. ..+.|.+++..+..         ++.+.+     .+.|.|......+ |.|+|.|.|..+.......+.
T Consensus       164 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          164 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EeeEeCCCeEEEEEECCccCceEecCceECCCCCEEE-----EEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            998 453 35889998864421         112221     3468888888778 999999999887655544443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=5e-10  Score=103.76  Aligned_cols=97  Identities=22%  Similarity=0.350  Sum_probs=82.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.|...|.++.+..|++++|.|.+.|.|.+.+.|++++..+.. ..++.+...+   +|.|.++...|+|.|+|.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            3678888888999999999999999999999999999999987764 3455544433   89999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCccc
Q psy8139         529 NRAGHSITKARLRLEAPPTIR  549 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~~  549 (1101)
                      |..|.....+.|.|..++...
T Consensus        83 n~~g~~~~~~~l~V~~~~~p~  103 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGVPV  103 (118)
T ss_dssp             CSSCEEEEECCEEEECCSCCC
T ss_pred             cCCCcEEEEEEEEEEeCCCCc
Confidence            999998888888888776543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.03  E-value=3.5e-10  Score=117.36  Aligned_cols=124  Identities=17%  Similarity=0.173  Sum_probs=87.5

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-cCCC-e
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-K  483 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~-~  483 (1101)
                      .+|.|.++++.|+|.|+|.|.|..|....    ....+.+.. ...+|.+...+....+..|+.++|.|.+.| .|.+ .
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~----~~~~l~V~~-~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~  145 (213)
T 3d9a_L           71 FTLSINSVETEDFGMYFCQQSNSWPYTFG----GGTKLEIKR-ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN  145 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEEC----CCEEEEECC-CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECCCChhhCEEEEEeeecCCcceeC----CCEEEEEec-CCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceE
Confidence            48999999999999999999987663221    123344432 233676665444444557999999999987 5665 8


Q ss_pred             EEEEECCEEeecCCcEE--EEec-CC----eeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         484 VSWYKDGFEIFSSRRQR--IVTD-ND----ISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~--~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ++|+++|..+.......  .... ++    .+.|.|.++...|+|.|+|.|.|.....
T Consensus       146 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          146 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             EEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            99999999876541111  1111 11    2489999999999999999999987654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.03  E-value=3e-09  Score=108.33  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCC-eEEEEEEEecc-CC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDE-KVEFTVQVEGI-PT  481 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~-~v~L~C~~~g~-p~  481 (1101)
                      .+.+|.|.+++..|+|.|+|.|.|..|...     ..+.+.+... +..|.+...+  .....|. +++|.|.+.|. |.
T Consensus        68 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~L~V~~~-~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~  139 (193)
T 2if7_A           68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKL-----SSYTLRILRQ-LRNIQVTNHS--QLFQNMTCELHLTCSVEDADDN  139 (193)
T ss_dssp             TTCCEEECSCCGGGCEEEEEEEECSSCEEE-----EEEEEEEECC-CEEEEEEECC--C---CSSEEEEEEEEEESCCTT
T ss_pred             CCeEEEECCCCcccCceEEEEEEecCCCeE-----EEEEEEEEcc-CCCCeEecCc--eeecCCCceEEEEEEEecCCCc
Confidence            357899999999999999999999876532     2344554321 2224444333  1233455 89999999985 58


Q ss_pred             CeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCC-CCEEEEEEEEeCCCceEEE
Q psy8139         482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-DEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       482 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~-d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      |.++|+++|..+...         .  .|.|...... |.|.|+|.|.|..|..+..
T Consensus       140 p~i~W~~~g~~l~~~---------~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          140 VSFRWEALGNTLSSQ---------P--NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             CEEEEEETTEEEESS---------S--EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             eEEEEEeCCEEcCCC---------C--eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            899999999865322         2  5666554444 8999999999999887543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.6e-10  Score=103.21  Aligned_cols=99  Identities=30%  Similarity=0.498  Sum_probs=84.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.|...|.++.+..|++++|.|.+.|.|.+.+.|++++..+......... ..++...|.|.++...|+|.|+|.|.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            36788888899999999999999999999999999999999887665544433 33445689999999999999999999


Q ss_pred             eCCCceEEEEEEeeccCCcc
Q psy8139         529 NRAGHSITKARLRLEAPPTI  548 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~~p~~  548 (1101)
                      |..|.....+.|.|..+|..
T Consensus        87 n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             CSSCEEEECCEEEEECCCCS
T ss_pred             CCCCEEEEEEEEEEeCCCCC
Confidence            99999888888999877643

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.03  E-value=1.1e-09  Score=101.93  Aligned_cols=102  Identities=28%  Similarity=0.513  Sum_probs=80.2

Q ss_pred             eeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecC-CCceEEcCcc-ccccceEEEcCcc
Q psy8139         337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-SPYWVRASPH-MVEDTELMVSGLE  414 (1101)
Q Consensus       337 ~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~-~~~w~~~~~~-~~~~~~l~i~~L~  414 (1101)
                      +......+|.+|..+.+.    .++.++++|+|.++ .+++.+|.+|.|+++..+ ...|...... ......++|.+|.
T Consensus        10 ~~~~~~~~P~~P~~~~~~----~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~   84 (121)
T 1x4z_A           10 PDHGRLSPPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLE   84 (121)
T ss_dssp             CCSSSCCCCCCCCCCEEE----ECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCC
T ss_pred             eccCcCCCCccCCCCEEE----EccCCEEEEEEECC-CCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCC
Confidence            444556677777777663    67789999999965 577889999999998876 5678765433 3456789999999


Q ss_pred             CCccEEEEEEEEecCCCCCCCCCCcceEE
Q psy8139         415 PGWRYQFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       415 p~d~y~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      +++.|.|+|.|.|..|.+.++..+..+++
T Consensus        85 p~t~Y~frV~A~n~~G~s~~S~~~~~v~~  113 (121)
T 1x4z_A           85 KGISYKFRVRALNMLGESEPSAPSRPYVV  113 (121)
T ss_dssp             TTCEEEEEEEEEETTEECCCCCCCCCEEC
T ss_pred             CCCEEEEEEEEEcCCCcCCCcCCCCCEEc
Confidence            99999999999999999988876655543

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.02  E-value=2e-09  Score=97.06  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=61.3

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|.+|.++.+..++.+++.|+|.+|.                                                  +.+
T Consensus         6 t~p~~P~~l~v~~~~~~sv~lsW~~p~--------------------------------------------------~~i   35 (105)
T 2cum_A            6 SGLEAPRDLEAKEVTPRTALLTWTEPP--------------------------------------------------VRP   35 (105)
T ss_dssp             TTCCCCEEEEEESCCSSCEEEEEECCS--------------------------------------------------SCC
T ss_pred             cCCCCCCceEEEeccCCEEEEEEcCCC--------------------------------------------------Ccc
Confidence            467777777777777777777776542                                                  246


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      .+|.|.|+..++ .|..+. .....++++|.+|.|++.|.|+|.|.|..|.|.+
T Consensus        36 ~~Y~i~y~~~~~-~~~~~~-~~~~~ts~~l~~L~p~t~Y~~~V~A~~~~g~s~~   87 (105)
T 2cum_A           36 AGYLLSFHTPGG-QTQEIL-LPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPP   87 (105)
T ss_dssp             SEEEEEEECTTS-CEEEEE-ECSSCSEEEECSCCTTCEEEEEEEEEBTTBCCCC
T ss_pred             ceEEEEEEeCCC-ceEEEE-ECCCccEEEECCCCCCCEEEEEEEEEeCCcccCC
Confidence            788888876554 455442 2367789999999999999999999999998765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.02  E-value=3.9e-09  Score=112.99  Aligned_cols=138  Identities=9%  Similarity=0.123  Sum_probs=93.5

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC----------------CCCCCeeeecCceeEEccC
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS----------------PAAAPSFIRALHDTTALED  467 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~----------------~~~~P~~~~~p~~~~v~~g  467 (1101)
                      ...+|.|.++++.|+|.|.|.|.|..+... ......+.+.+...                ...+|.+...|..+.+.+|
T Consensus        74 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G  152 (256)
T 3tf7_C           74 SSFHLRKASVHRSDSAVYFCAVSAKGTGSK-LSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTG  152 (256)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEECTTCTTC-EEECCCEEEEEEC---------------------CCEEESCSEEEEETT
T ss_pred             CEEEEEECCCCcccCEEEEEEEecCCCccc-eEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCC
Confidence            345799999999999999999999765321 11122344444431                3456778888889999999


Q ss_pred             CeEEEEEEEeccCCCeEEEEECC--E---Eee------------cCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         468 EKVEFTVQVEGIPTPKVSWYKDG--F---EIF------------SSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       468 ~~v~L~C~~~g~p~~~v~W~~~g--~---~~~------------~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ++++|.|.+.+. .+.+.|++..  .   .+.            ...++.+.. .....+|+|.++..+|+|.|+|.|.|
T Consensus       153 ~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n  231 (256)
T 3tf7_C          153 ENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSD  231 (256)
T ss_dssp             CCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecC
Confidence            999999999887 6799999832  1   111            012333322 23455899999999999999999999


Q ss_pred             CCCceEE--EEEEeec
Q psy8139         530 RAGHSIT--KARLRLE  543 (1101)
Q Consensus       530 ~~g~~~~--s~~l~V~  543 (1101)
                      ..|....  ...|.|.
T Consensus       232 ~~g~~~fG~gt~l~v~  247 (256)
T 3tf7_C          232 APGQLYFGEGSKLTVL  247 (256)
T ss_dssp             ETTEEEECCCEEEEEE
T ss_pred             CCCccEECCCeEEEEE
Confidence            8775432  2445554

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.02  E-value=1.2e-09  Score=98.35  Aligned_cols=56  Identities=14%  Similarity=0.203  Sum_probs=43.4

Q ss_pred             CcceEEEEEEeCC-CCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         718 PVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +|.+|.|.|...+ ...|.... ..+..++++|.+|.|++.|.|+|.|.|..|.|.++
T Consensus        29 ~i~~Y~v~y~~~~~~~~~~~~~-v~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~s~p~   85 (104)
T 2rb8_A           29 PVDGFELTYGIKDVPGDRTTID-LTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPA   85 (104)
T ss_dssp             CCSEEEEEEEETTCTTCCEEEE-EETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ccceEEEEEEECcCCCceEEEE-cCCCcCEEEeCCCCCCCEEEEEEEEEeCCccCCCE
Confidence            4778888887654 23344332 23677899999999999999999999999997663

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.02  E-value=2.4e-09  Score=113.78  Aligned_cols=170  Identities=12%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             cCceeEEccCCeEEEEEEEec--cCCCeEEEEEC--CE---Ee---e-----------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKD--GF---EI---F-----------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~--g~---~~---~-----------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+.+|++++|.|.+.+  .+...+.|++.  +.   .+   .           ...++.+..+  .+..+|+|.+
T Consensus         5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            455678999999999999975  34467999873  11   11   0           1245555432  3456899999


Q ss_pred             cCCCCCEEEEEEEEeCCC----------------------ceEEEEEEeecc----CCccccCCCCCCCeEEeeCCEEEE
Q psy8139         515 AALMDEGEIKCTATNRAG----------------------HSITKARLRLEA----PPTIRLPKQYEDGLLFEMGEIIKL  568 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g----------------------~~~~s~~l~V~~----~p~~~~~~~~~~~~~v~~g~~~~l  568 (1101)
                      ++.+|+|.|.|.+.+..+                      .......|.|..    +|.+...+.   ...+..|..+.|
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~~~L  161 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAP---SSKSTSGGTAAL  161 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECC---C------CEEEE
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCC---CccccCCCcEEE
Confidence            999999999999987421                      111134566652    232221111   113446899999


Q ss_pred             EEEEee-cC-CCeeEEEECCeecCC---------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         569 KVSMAG-MP-PPTARWLHNGEPLTS---------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       569 ~c~~~g-~p-~~~v~W~~~g~~l~~---------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .|.+.+ .| .+.+.|.+++..+..         ++.+.+     .+.|.|......+ +.|+|.|.|..+.......+
T Consensus       162 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          162 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEE-----EEEEEEChhhcCC-CeEEEEEEECCCCcceEEEE
Confidence            999997 44 567999998864321         122222     3467788777777 99999999987765544433

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.02  E-value=6.4e-09  Score=110.98  Aligned_cols=174  Identities=15%  Similarity=0.223  Sum_probs=109.9

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E--E-ee------------cCCcEEEEe-cCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F--E-IF------------SSRRQRIVT-DNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~--~-~~------------~~~~~~~~~-~~~~~~l~I~~l~  516 (1101)
                      +...|..+.+..|++++|.|.+. .+.+.+.|++..  .  . +.            ...++.+.. ..+...|.|.++.
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            45567788999999999999985 457899999842  1  1 11            123444432 1334589999999


Q ss_pred             CCCCEEEEEEEEeCCC---ceEEEEEEeecc------CCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEEC
Q psy8139         517 LMDEGEIKCTATNRAG---HSITKARLRLEA------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHN  585 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g---~~~~s~~l~V~~------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~  585 (1101)
                      .+|+|.|.|.+.+..+   .......|.|..      +|.+...+.  ....+..|..+.|.|.+.|. |. +.+.|+++
T Consensus        85 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~--~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP--SEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             SCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECC--CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECC--ChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            9999999999998621   111224566653      333321100  01112258899999999985 64 49999999


Q ss_pred             CeecCCCCceE---E---E-eecc----eEEEEEccCCCC-CCeEEEEEEEeCCCCce
Q psy8139         586 GEPLTSGGRYE---I---T-HTDR----YLNLRISDARRA-DRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       586 g~~l~~~~~~~---~---~-~~~~----~~sl~i~~l~~~-~~y~y~c~A~N~~G~~~  631 (1101)
                      |..+..+....   .   . ..++    .+.|.|...... +.+.|+|.|.|..+...
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            98876432211   0   0 0111    234666655443 57899999999876543

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.02  E-value=5.5e-10  Score=101.30  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=69.0

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      .+|.+|.++..  ..+.++++|+|.++ .+||++|++|.|+++..+...|...........+++|.+|.|++.|.|+|.|
T Consensus         7 ~~P~pP~~~~~--~~~~~sv~L~W~p~-~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A   83 (114)
T 2kbg_A            7 REPSPPSIHGQ--PSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITA   83 (114)
T ss_dssp             CCCCSCCEECC--BCSTTCEEEEECCC-CCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEE
T ss_pred             CCccCCccccc--ccCCCEEEEEEECC-CCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEE
Confidence            44555555432  25789999999976 6899999999999998766666544434456678999999999999999999


Q ss_pred             EecCCCCCCC
Q psy8139         426 ENVVGFSEPG  435 (1101)
Q Consensus       426 ~n~~G~~~~s  435 (1101)
                      .|..|.+.++
T Consensus        84 ~N~~G~s~pS   93 (114)
T 2kbg_A           84 ANRLGYSEPT   93 (114)
T ss_dssp             ECTTSCEEEE
T ss_pred             EeCCcCcCCc
Confidence            9999998765

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.01  E-value=2.2e-09  Score=95.98  Aligned_cols=91  Identities=25%  Similarity=0.402  Sum_probs=79.8

Q ss_pred             CCCeeeecCce-eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHD-TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.|...+.+ ..+..|+++.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++...|+|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            46778777776 6788999999999998 6899999999999888777888887777789999999999999999999  


Q ss_pred             CCCceEEEEEEeeccCC
Q psy8139         530 RAGHSITKARLRLEAPP  546 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p  546 (1101)
                        |....++.|.|..+|
T Consensus        83 --g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGP   97 (100)
T ss_dssp             --TTEEEEEEEEECCSC
T ss_pred             --CCceEEEEEEEecCC
Confidence              677778889998876

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.01  E-value=7.9e-10  Score=97.84  Aligned_cols=88  Identities=15%  Similarity=0.305  Sum_probs=75.7

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.+...|.+..+..|+++.|.|.+.|.| +.+.|+++|..+....++.+.  +  ..|.|.++...|+|.|+|.|.|
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--G--EEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--S--SEEEESSCCGGGSEEEEEEEEE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--C--CEEEECCCChHHCEEEEEEecc
Confidence            4677888888899999999999999999998 799999999888766665543  2  3899999999999999999999


Q ss_pred             CCCceEEEEEEee
Q psy8139         530 RAGHSITKARLRL  542 (1101)
Q Consensus       530 ~~g~~~~s~~l~V  542 (1101)
                      ..|.....+.|.|
T Consensus        82 ~~g~~~~~~~l~V   94 (95)
T 2ckn_A           82 PSGSDTTYFSVNV   94 (95)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9998877777766

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.01  E-value=1.6e-09  Score=97.59  Aligned_cols=91  Identities=30%  Similarity=0.425  Sum_probs=77.9

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      |+.|...+.++.+..|++++|.|.+.+ |.+.+.|++++..+....  ++.+...+....|.|.++...|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            444777888999999999999999988 668999999999988776  66887777778999999999999999999977


Q ss_pred             CCCceEEEEEEeeccCCc
Q psy8139         530 RAGHSITKARLRLEAPPT  547 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~~p~  547 (1101)
                          ...++.|.|..+|.
T Consensus        86 ----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ----EEEEEEEEEECCCS
T ss_pred             ----CcEEEEEEEeCCCC
Confidence                46677888887664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.01  E-value=4.1e-10  Score=115.85  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc---------------------------CCCCCCeee
Q psy8139         404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR---------------------------SPAAAPSFI  456 (1101)
Q Consensus       404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~---------------------------~~~~~P~~~  456 (1101)
                      ...+|.|.+++..|+|.|+|.+.+..        +..+.+.+..                           ....+|.+.
T Consensus        47 ~~~~L~i~~v~~~DsG~Y~C~~~~~~--------s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (204)
T 1sy6_A           47 DKKKWNLGSNAKDPRGMYQCKGSQNK--------SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT  118 (204)
T ss_dssp             SCCCEEEEEGGGCCEEEEEEESSSSC--------CCCEEEEEEC------------------------------------
T ss_pred             CCCeEEeCCCCcCCCEEEEEEecCCC--------CeeEEEEEEEecccccccccccccccccccccccccccccccccee
Confidence            34679999999999999999964311        2224444330                           000123333


Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC-cEEEEecCCeeEEEEeec-CCCCCEEEEEEEEeCCCce
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR-RQRIVTDNDISTLIIHQA-ALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~~l~I~~l-~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ..|. ....+|++++|.|.  +.|.|.+.|++++..+.... ...+...+  ..|.|.++ ...|+|.|+|.|.|..|..
T Consensus       119 ~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~~L~I~~v~~~~D~G~Y~C~A~N~~g~~  193 (204)
T 1sy6_A          119 QTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRGSKPED  193 (204)
T ss_dssp             CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEET--TEEEETTCCHHHHCEEEEEEETTSCGGG
T ss_pred             cCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCC--CEEEEeeCCccccCEEEEEEeccCCCCc
Confidence            2332 22348999999999  78889999999999875431 11122123  38999999 9999999999999999863


Q ss_pred             -EEEEEEee
Q psy8139         535 -ITKARLRL  542 (1101)
Q Consensus       535 -~~s~~l~V  542 (1101)
                       +....|.+
T Consensus       194 ~s~~l~l~~  202 (204)
T 1sy6_A          194 ANFYLYLRA  202 (204)
T ss_dssp             SSCEEEEEE
T ss_pred             eeEEEEEEE
Confidence             33334433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.00  E-value=6.1e-10  Score=115.22  Aligned_cols=124  Identities=16%  Similarity=0.137  Sum_probs=86.1

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEec-cCCC-e
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-K  483 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~-~  483 (1101)
                      .+|.|.++++.|+|.|+|.|.|..|....    ....+.+.. ...+|.+...+....+..|+.++|.|.+.| .|.+ .
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~----~~~~l~V~~-~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  144 (210)
T 1lk3_L           70 FTLTIDPVEADDTAIYFCQQSWNGPLTFG----AGTKLELKR-ADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDIS  144 (210)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEEC----CCEEEEECC-CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECCCCHHHCeEEEEEEEcCCCceeC----CCEEEEEcC-CCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceE
Confidence            48999999999999999999987653211    123344432 224676665544444558999999999987 4543 8


Q ss_pred             EEEEECCEEeecC-Cc-EEEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         484 VSWYKDGFEIFSS-RR-QRIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       484 v~W~~~g~~~~~~-~~-~~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      +.|+++|..+... .. ...... ++    .+.|.|.++...|+|.|+|.|.|.....
T Consensus       145 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          145 VKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            9999999987644 11 011111 11    2379999999999999999999976543

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.00  E-value=7.4e-10  Score=103.55  Aligned_cols=102  Identities=26%  Similarity=0.399  Sum_probs=77.0

Q ss_pred             eeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEe---cCCCceEEcCcc--ccccceEEEcC
Q psy8139         338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR---TGSPYWVRASPH--MVEDTELMVSG  412 (1101)
Q Consensus       338 ~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~---~~~~~w~~~~~~--~~~~~~l~i~~  412 (1101)
                      .+....++.+|++|..+.+. .++.++++|+|.+|. +++.+|++|.|+++.   .....|......  ......++|.+
T Consensus         8 ~~~~~~~~~~P~~P~~l~~~-~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~   85 (124)
T 1wis_A            8 TISSGVPPELPGPPTNLGIS-NIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPD   85 (124)
T ss_dssp             CCCSCCCCCCCCCCEEEEEE-SCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECS
T ss_pred             cccccCCCCCCccCCCCEEE-EecCCEEEEEEECCC-CCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCC
Confidence            33444455566666665444 778999999998874 777899999999987   356678764322  34567899999


Q ss_pred             ccCCccEEEEEEEEecCCCCCCCCCCcce
Q psy8139         413 LEPGWRYQFRITAENVVGFSEPGPLSEPL  441 (1101)
Q Consensus       413 L~p~d~y~y~c~A~n~~G~~~~s~~s~~v  441 (1101)
                      |.|++.|.|+|.|.|..|.+.++..+..+
T Consensus        86 L~p~t~Y~frV~A~N~~G~s~~S~~~~~~  114 (124)
T 1wis_A           86 LNPFTCYSFRMRQVNIVGTSPPSQPSRKI  114 (124)
T ss_dssp             CCTTSEECCCCEEECSSCBCCCCCCCCCE
T ss_pred             CCCCCEEEEEEEEEECCccCCCcCCccce
Confidence            99999999999999999999887654433

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.00  E-value=1.7e-09  Score=96.21  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             CCcceEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         717 SPVLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ++|.+|.|.|+..++. .|.... .....++++|.+|.|++.|.|+|.|.|..|.|+|
T Consensus        27 ~~i~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~p   83 (98)
T 3teu_A           27 ATITGYRITYTPSNGPGEPKELT-VPPSSTSVTITGLTPGVEYVVSVYALKDNQESPP   83 (98)
T ss_dssp             SCCSEEEEEEEETTSCSCCEEEE-ECTTCSEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             CcccEEEEEEEECCCCCceEEEE-cCCCcCEEEecCCCCCCEEEEEEEEEeCCCCCCC
Confidence            3577888888865443 343333 2367899999999999999999999999999766

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.00  E-value=2.6e-09  Score=110.71  Aligned_cols=126  Identities=10%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc----C
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI----P  480 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~----p  480 (1101)
                      +.+|.|.++++.|+|.|.|.+.+..+.. .+..+..+.+.+... ..+|.+.. +..  +.+|+.++|.|.+.+.    |
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~~~~l~V~~~-~~~p~i~~-~~~--~~~G~~v~L~C~~~~~~~~~p  155 (214)
T 2zg1_A           81 NCSLSIGDARMEDTGSYFFRVERGRDVK-YSYQQNKLNLEVTAL-IEKPDIHF-LEP--LESGRPTRLSCSLPGSCEAGP  155 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEE-EECCSSCEEEEEECC-CCCCEEC---CC--CCTTCCEEEEEECTTCCSCSS
T ss_pred             eEEEEEccCCHhhCceEEEEEEcCCCce-eeecCCceEEEEecC-CCCCceec-Ccc--ccCCCeEEEEEEeccCCCCCC
Confidence            4579999999999999999999875321 111123455555432 23555543 222  6789999999999774    8


Q ss_pred             CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       481 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      .|.++|++++.......      ....+.|.|..+...|.|.|+|.|.|..+....+..+.
T Consensus       156 ~p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          156 PLTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             CCEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             CceEEEeCCCCccCCCC------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            89999999885432211      12334899999999999999999999865544443333

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.00  E-value=2.8e-09  Score=116.45  Aligned_cols=143  Identities=11%  Similarity=0.035  Sum_probs=95.1

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEecc------------CCCCCCeeeecCceeEEccCCeEEE
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR------------SPAAAPSFIRALHDTTALEDEKVEF  472 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~------------~~~~~P~~~~~p~~~~v~~g~~v~L  472 (1101)
                      ..+|+|.++++.|+|.|.|.+.|..+............+.+..            ....++.+...|..+.+.+|++++|
T Consensus       100 ~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  179 (291)
T 2gki_A          100 TAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTM  179 (291)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEE
T ss_pred             EEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEE
Confidence            3579999999999999999999875211110111223444433            1112445566677888999999999


Q ss_pred             EEEEeccCCC------eEEEEECC--E---Eeec---------CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         473 TVQVEGIPTP------KVSWYKDG--F---EIFS---------SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       473 ~C~~~g~p~~------~v~W~~~g--~---~~~~---------~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      .|.+.+.|.+      .+.|+++.  .   .+..         ..++.....+...+|+|.++..+|+|.|+|.|.|...
T Consensus       180 ~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  259 (291)
T 2gki_A          180 SCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHM  259 (291)
T ss_dssp             EEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCc
Confidence            9999988776      89999952  2   1111         3455555455667899999999999999999998643


Q ss_pred             ceEE-EEEEeeccCCc
Q psy8139         533 HSIT-KARLRLEAPPT  547 (1101)
Q Consensus       533 ~~~~-s~~l~V~~~p~  547 (1101)
                      .... ...|.|...+.
T Consensus       260 ~~fg~gt~l~v~~~~~  275 (291)
T 2gki_A          260 YTFGSGTKLEIKHHHH  275 (291)
T ss_dssp             EEECCCEEEEEECC--
T ss_pred             eEEcCCEEEEEEeeEc
Confidence            2222 24566655443

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.00  E-value=7.2e-10  Score=116.72  Aligned_cols=173  Identities=17%  Similarity=0.271  Sum_probs=101.3

Q ss_pred             CeeeecCceeE-EccCCeEEEEEEEeccC----CCeEEEEECCEEeecCCcE--EEEecCC---eeEEEEeecCCCCCEE
Q psy8139         453 PSFIRALHDTT-ALEDEKVEFTVQVEGIP----TPKVSWYKDGFEIFSSRRQ--RIVTDND---ISTLIIHQAALMDEGE  522 (1101)
Q Consensus       453 P~~~~~p~~~~-v~~g~~v~L~C~~~g~p----~~~v~W~~~g~~~~~~~~~--~~~~~~~---~~~l~I~~l~~~d~g~  522 (1101)
                      +.++..|.... +..|..++|.|.+.|.+    ...|+|+++|..+......  ....++.   .+.|.|......|.+.
T Consensus        24 ~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~  103 (240)
T 4acp_A           24 SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKE  103 (240)
T ss_dssp             EEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCC
T ss_pred             EEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCE
Confidence            33445555555 45699999999999864    3479999999887432100  0001111   1356676666667899


Q ss_pred             EEEEEEeCCCceEEEEEE----eeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-cCC-CeeEEEECCeecCCCCceE
Q psy8139         523 IKCTATNRAGHSITKARL----RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPP-PTARWLHNGEPLTSGGRYE  596 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l----~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-~p~-~~v~W~~~g~~l~~~~~~~  596 (1101)
                      |+|.|.+..+.......+    .+..+|.+...+....   ...|..+.|.|.+.+ .|. ..++|.++|..+.......
T Consensus       104 YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~---~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~  180 (240)
T 4acp_A          104 YKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD---ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATP  180 (240)
T ss_dssp             EEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG---GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECC
T ss_pred             EEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH---HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccC
Confidence            999999987743333222    2334555433222111   113789999999998 454 4899999998875321111


Q ss_pred             EEeecc-----eEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         597 ITHTDR-----YLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       597 ~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      ....++     .+.|.+......+.+.|+|.+.|..-
T Consensus       181 ~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          181 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            111111     23455554444568999999998643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.99  E-value=3.4e-09  Score=95.22  Aligned_cols=83  Identities=19%  Similarity=0.291  Sum_probs=69.2

Q ss_pred             ccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEE--EecC---CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI--VTDN---DISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      ..+..+.|.|.+.|.|.|.++|+++|..+........  ...+   ..+.|.|.++...|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            4577899999999999999999999999887655322  1111   1346999999999999999999999999999999


Q ss_pred             EeeccCCc
Q psy8139         540 LRLEAPPT  547 (1101)
Q Consensus       540 l~V~~~p~  547 (1101)
                      |.|..+|.
T Consensus        94 l~V~~~P~  101 (103)
T 1wwb_X           94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEECCCCC
Confidence            99988774

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.99  E-value=7.4e-10  Score=114.77  Aligned_cols=124  Identities=14%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--e
Q psy8139         406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--K  483 (1101)
Q Consensus       406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--~  483 (1101)
                      .+|.|.++++.|+|.|.|.|.|..+...    +....+.+...+..+|.+...+....+..|+.++|.|.+.|.+++  .
T Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~----~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~  148 (212)
T 1q0x_L           73 AALTITGAQTEDEAIYFCALWSNNKLVF----GGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVT  148 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEE----CCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECCCCccCCEEEEEEEecCchhhc----CCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeE
Confidence            4799999999999999999999765311    122445554333457777665544445679999999999885443  8


Q ss_pred             EEEEECCEEeecCCcEE--EEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         484 VSWYKDGFEIFSSRRQR--IVTDND----ISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~--~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      |+|+++|..+.......  ....++    .+.|.|......|.|.|+|.|.|....
T Consensus       149 v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          149 VDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             EEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            99999999876442110  111111    236889999999999999999998654

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.99  E-value=2.6e-09  Score=106.13  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCe
Q psy8139         405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPK  483 (1101)
Q Consensus       405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~  483 (1101)
                      ...+.+.+++..|.|.|+|.|.|..+       +..+.+.+..    +|.+.. +....+..|+++.|.|.+ .+.|.+.
T Consensus        50 ~~~~~~~~~~~~d~G~Y~C~~~~~~~-------s~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~  117 (170)
T 3ry4_A           50 TQPSYRFKANNNDSGEYTCQTGQTSL-------SDPVHLTVLF----EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVK  117 (170)
T ss_dssp             CSSEEEEECCGGGCEEEEEEETTSBC-------CCCEEEEEEC----CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEE
T ss_pred             ccceEEEecccccCeEEEEEEeCCCc-------eEeEEEEEEC----CceEec-CCCceeecCCeEEEEEECCCCCCCce
Confidence            35678889999999999999986432       2345555542    333333 445678899999999999 4556689


Q ss_pred             EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EEEEEee
Q psy8139         484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRL  542 (1101)
Q Consensus       484 v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s~~l~V  542 (1101)
                      +.|+++|..+...        .....|.|.++...|+|.|+|.|.|..|... ....|.|
T Consensus       118 ~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          118 VTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            9999999876421        1234899999999999999999999988532 2344444

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.9e-10  Score=104.82  Aligned_cols=103  Identities=24%  Similarity=0.473  Sum_probs=84.0

Q ss_pred             cceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCcc
Q psy8139         335 TDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE  414 (1101)
Q Consensus       335 ~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~  414 (1101)
                      ..+.+.+.++|++|..+.+.    .++.++++|+|.+|..+|+.+|.+|.|+++..+...|..... ......++|.+|.
T Consensus         8 ~~~~v~~~~~P~~P~~l~~~----~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~~v~~L~   82 (120)
T 2yux_A            8 ASIDIQIIDRPGPPQIVKIE----DVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE-HYHRTSATITELV   82 (120)
T ss_dssp             CCCCCCCCCCCCCCSCEEEE----EEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEES-SCCSSCCEECCCC
T ss_pred             EEEEEEeecCCCcCCCCEEE----EecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeee-cCCcCEEEECCCC
Confidence            34666777778877776663    677899999999998788789999999999887778886643 2456789999999


Q ss_pred             CCccEEEEEEEEecCCCCCCCCCCcceE
Q psy8139         415 PGWRYQFRITAENVVGFSEPGPLSEPLT  442 (1101)
Q Consensus       415 p~d~y~y~c~A~n~~G~~~~s~~s~~vt  442 (1101)
                      |++.|.|+|.|.|..|.+.++..+..+.
T Consensus        83 p~t~Y~frV~A~n~~G~s~~S~~s~~~~  110 (120)
T 2yux_A           83 IGNEYYFRVFSENMCGLSEDATMTKESA  110 (120)
T ss_dssp             SSEEEEEEECCCSSSCSCSSCEECSSCE
T ss_pred             CCCEEEEEEEEeeCCcCCCCccCcCCce
Confidence            9999999999999999998886555444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.99  E-value=8.9e-10  Score=96.11  Aligned_cols=87  Identities=21%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             CCCeeeecCcee--EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDT--TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~--~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .||.+..++.+.  .+..|+++.|.|.+.+ |.+.++|+++|..+..+.++.+...++...|.|.++...|+|.|+|.|.
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            355555555554  4468999999999866 8889999999999988888888888888899999999999999999985


Q ss_pred             eCCCceEEEEEEee
Q psy8139         529 NRAGHSITKARLRL  542 (1101)
Q Consensus       529 n~~g~~~~s~~l~V  542 (1101)
                      |    ...++.|.|
T Consensus        82 n----~~~~~~ltV   91 (91)
T 2lvc_A           82 D----ECAYFTVTI   91 (91)
T ss_dssp             S----CEEEEEEEC
T ss_pred             c----eEEEEEEEC
Confidence            4    345555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1101
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	7e-22
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	7e-22
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	7e-22
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	2e-21
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-20
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	5e-20
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	6e-19
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	6e-19
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-18
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-18
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-18
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-16
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-18
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-18
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-16
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	8e-16
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	8e-16
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-15
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-15
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-10
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	5e-15
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	5e-15
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	6e-15
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	6e-15
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	7e-15
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	7e-15
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	7e-15
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	7e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-11
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	1e-14
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-14
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-14
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-14
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	2e-14
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	2e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-14
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-06
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	3e-14
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	3e-14
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	3e-14
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	3e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-11
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-14
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-13
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	9e-14
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	9e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	9e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-14
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-13
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-13
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-13
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-13
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-13
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	2e-13
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-13
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	3e-13
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	3e-13
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	3e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-07
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-13
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-13
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	6e-13
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	6e-13
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	1e-12
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	1e-12
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-12
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-12
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	1e-12
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	1e-12
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-12
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.004
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	2e-12
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-11
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	2e-12
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	6e-12
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-12
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-11
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	3e-09
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-12
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-07
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	3e-12
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	3e-12
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	4e-12
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	4e-12
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	6e-12
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	6e-12
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	6e-12
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	6e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-08
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	7e-12
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	1e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-12
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	7e-12
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-06
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	1e-11
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	1e-11
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	1e-11
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	1e-11
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	2e-11
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	3e-11
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	2e-11
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	2e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-06
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	4e-11
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	4e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-11
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	5e-11
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	5e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-09
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	1e-10
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	1e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	2e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	2e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-06
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	3e-10
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	3e-10
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	3e-10
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	3e-10
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	3e-10
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	3e-10
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	4e-10
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	5e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-10
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	7e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	8e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-06
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	9e-10
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	9e-10
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	1e-09
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	1e-09
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	1e-09
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	1e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-09
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-09
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-09
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-09
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	3e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	3e-09
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-09
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	3e-09
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	3e-09
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-09
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-09
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	4e-09
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	4e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-09
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	0.001
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-08
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-09
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	5e-09
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	5e-09
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	6e-09
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	6e-09
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	8e-09
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	8e-09
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	9e-09
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	9e-09
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-08
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	1e-08
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	1e-08
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	1e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	9e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-08
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	2e-08
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	2e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-08
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	3e-08
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	5e-08
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-08
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-08
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	5e-08
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	5e-08
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	6e-08
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	6e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	7e-08
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	8e-08
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-05
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	9e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-04
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	1e-07
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	1e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	9e-05
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-07
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-07
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-07
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-07
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	3e-07
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	3e-07
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-07
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	3e-07
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-07
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-07
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	6e-07
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	6e-07
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	6e-07
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	6e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	9e-07
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	1e-06
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	1e-06
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	2e-06
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	2e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-06
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	6e-06
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	6e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-05
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-05
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	3e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	5e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	6e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	1e-04
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	8e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	4e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	8e-04
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	8e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.001
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	0.001
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.001
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.003
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.003
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.002

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.2 bits (220), Expect = 7e-22
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P    +      +     T++W PP+  G   + GYLVE+   GS  WV A+   V
Sbjct: 1   PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 56

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
           E     V  L  G R  FR+   N+ G SEP  L +P+T+
Sbjct: 57  ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 96

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.2 bits (220), Expect = 7e-22
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P    +      +     T++W PP+  G   + GYLVE+   GS  WV A+   V
Sbjct: 1   PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 56

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
           E     V  L  G R  FR+   N+ G SEP  L +P+T+
Sbjct: 57  ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 96

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.4 bits (221), Expect = 7e-22
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRAS 738
             PP  P +P +     +       + W P   +GG P+  + VE+++        +  S
Sbjct: 8   LSPPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATS 62

Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                   + ++GLE G  Y+FR+ A N++G SEP   S P  V+
Sbjct: 63  AIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.3 bits (218), Expect = 2e-21
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 401
           PP  P +P +     +       + W P   +GG P+  + VE+++        +  S  
Sbjct: 10  PPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAI 64

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                 + ++GLE G  Y+FR+ A N++G SEP   S P  V+
Sbjct: 65  PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 3e-20
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 400
           +++ P  P  P     +    R    + W  P +DG SP++ Y++E     +P+ V  + 
Sbjct: 7   VRQLPHAPEHPVATLSTVE--RRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLAS 63

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
              + T + V GL P   YQFR+ A N VG  +    +E +++
Sbjct: 64  VDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 5e-20
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P  P     +    R    + W  P +DG SP++ Y++E     +P+ V  +    
Sbjct: 10  LPHAPEHPVATLSTVE--RRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDP 66

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
           + T + V GL P   YQFR+ A N VG  +    +E +++
Sbjct: 67  KATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 6e-19
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           PPGP   P+L     +       +RW PP  DGGSP+  Y VE                 
Sbjct: 1   PPGPCLPPRLQGRPKA---KEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 55

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
            + E  VS L PG  Y FR+ A N +GF      SE   +T
Sbjct: 56  SEVECTVSSLLPGKTYSFRLRAANKMGFGPF---SEKCDIT 93

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 6e-19
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           PPGP   P+L     +       +RW PP  DGGSP+  Y VE                 
Sbjct: 1   PPGPCLPPRLQGRPKA---KEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 55

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            + E  VS L PG  Y FR+ A N +GF      SE   +T
Sbjct: 56  SEVECTVSSLLPGKTYSFRLRAANKMGFGPF---SEKCDIT 93

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 1e-18
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P        S         + W  P  D     L Y V + + G       +     
Sbjct: 11  PSAPRDVVASLVST----RFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 66

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           + ++ +  L P   Y FR+ A+N  G  E    S PL V 
Sbjct: 67  EMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVE 103

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 1e-18
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P        S         + W  P  D     L Y V + + G       +     
Sbjct: 11  PSAPRDVVASLVST----RFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG 66

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           + ++ +  L P   Y FR+ A+N  G  E    S PL V 
Sbjct: 67  EMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVE 103

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 3e-18
 Identities = 21/94 (22%), Positives = 31/94 (32%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P  I+   D      E VE   +V G      +W K   +I  S   ++    + S L I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
             A     G       N+ G    +  L +   P
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 6e-16
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
           P  I+ P+  +       GE ++L   + G  P T  W+   + +      ++ +++   
Sbjct: 1   PQIIQFPEDQK----VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS 56

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
            L I  AR+   G Y     N LG   A   +TV D+P PP
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 97

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 4e-18
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           PGPP KPQ+      + ++  T+ W+P    G  P   Y++E          +   + V+
Sbjct: 16  PGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            T   V GL P   Y F + A N  G S+P P+S+P+         + PS
Sbjct: 71  TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT-----QDSGPS 115

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 4e-18
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           PGPP KPQ+      + ++  T+ W+P    G  P   Y++E          +   + V+
Sbjct: 16  PGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            T   V GL P   Y F + A N  G S+P P+S+P+         + PS
Sbjct: 71  TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT-----QDSGPS 115

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 1e-16
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDISTL 510
           AP     +   T  +     F V+V G P P+  WYK+G +I  S R      ++++  L
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
           +I      D   I   A N AG + + A L ++A
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
           +EAP      +          G     +V + G P P   W  NG  +    R      +
Sbjct: 2   MEAPKIFERIQSQT----VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE 57

Query: 602 RYLNLRI-SDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
             +   +  D    D        +N  GE  +   + V  +
Sbjct: 58  DNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 8e-16
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           + PGP    +    SP       T+ WE P    G  +  Y + +   G+          
Sbjct: 9   QLPGPAPNLRAYAASP----TSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVSS 63

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                  ++GL+    Y FR+ A N  G       +  + V 
Sbjct: 64  ---HSYTINGLKKYTEYSFRVVAYNKHGPGVS---TPDVAVR 99

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 8e-16
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGP    +    SP       T+ WE P    G  +  Y + +   G+           
Sbjct: 10  LPGPAPNLRAYAASP----TSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVSS- 63

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                 ++GL+    Y FR+ A N  G       +  + V 
Sbjct: 64  --HSYTINGLKKYTEYSFRVVAYNKHGPGVS---TPDVAVR 99

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGPP                  + W+PP    G  +   +     T +           
Sbjct: 20  VPGPPMGILFPEVRT----TSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAP 75

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
              +   +GL+P   Y FRITA+   G+ E    +E L VT ++
Sbjct: 76  SARQYTATGLKPESVYLFRITAQTRKGWGEA---AEALVVTTEK 116

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGPP                  + W+PP    G  +   +     T +           
Sbjct: 20  VPGPPMGILFPEVRT----TSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAP 75

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 786
              +   +GL+P   Y FRITA+   G+ E    +E L VT ++
Sbjct: 76  SARQYTATGLKPESVYLFRITAQTRKGWGEA---AEALVVTTEK 116

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.3 bits (171), Expect = 3e-15
 Identities = 23/94 (24%), Positives = 36/94 (38%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P FI   + T   E +   F  +V     P V+W+KD  E+  S +     + +   L I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
           ++    D+GE    A N  G       L +    
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 18/82 (21%), Positives = 27/82 (32%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G+       +    PP   W  +   L    +Y   +      L I+  +  D+GEY   
Sbjct: 16  GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 75

Query: 623 GVNSLGEDVASFLVTVTDRPLP 644
             NS G       + VT    P
Sbjct: 76  AKNSYGTKEEIVFLNVTRHSEP 97

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 5e-15
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P GPP    L P +         + W+ P+ +     + GY + +R        + S   
Sbjct: 8   PDGPPMDVTLQPVTSQ----SIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVE 63

Query: 403 V----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           +    +     +  L+   +Y   + A N  G    GP S  +  T
Sbjct: 64  MKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINAT 106

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 5e-15
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P GPP    L P +         + W+ P+ +     + GY + +R        + S   
Sbjct: 8   PDGPPMDVTLQPVTSQ----SIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVE 63

Query: 742 V----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           +    +     +  L+   +Y   + A N  G    GP S  +  T
Sbjct: 64  MKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINAT 106

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 6e-15
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P  P++     +  ++  T++W+ P    GS +  +++E              +M 
Sbjct: 10  EPDIPNPPRIA----NRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKG-NGEFCQCYMG 63

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              +  ++ L P    +FR++A N  G S     SE +   
Sbjct: 64  SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEEVLYY 101

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 6e-15
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P  P++     +  ++  T++W+ P    GS +  +++E              +M 
Sbjct: 10  EPDIPNPPRIA----NRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKG-NGEFCQCYMG 63

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              +  ++ L P    +FR++A N  G S     SE +   
Sbjct: 64  SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEEVLYY 101

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 7e-15
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PPGKP  L    ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   +
Sbjct: 2   PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 57

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 443
            + E  VSGL     Y+FR+ A+N  G  S P   S+ +T 
Sbjct: 58  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 98

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 7e-15
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PPGKP  L    ++ R   T++W  PEY GG  +  Y+VE R   +  W++A+   +
Sbjct: 2   PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 57

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 782
            + E  VSGL     Y+FR+ A+N  G  S P   S+ +T 
Sbjct: 58  LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 98

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 8/101 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PGP G                 + W+ P    G  + GY +                  
Sbjct: 10  VPGPVGHLSFSEILD----TSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPN 64

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              E  V+GL     Y   + A    G  +    S     +
Sbjct: 65  VTLEYRVTGLTALTTYTIEVAAMTSKGQGQV---SASTISS 102

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 8/101 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            PGP G                 + W+ P    G  + GY +                  
Sbjct: 10  VPGPVGHLSFSEILD----TSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPN 64

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              E  V+GL     Y   + A    G  +    S     +
Sbjct: 65  VTLEYRVTGLTALTTYTIEVAAMTSKGQGQV---SASTISS 102

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 1e-14
 Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 452 APSFIRALH----DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDND 506
           AP +                  V+F     G P P + W K+G E     R       N 
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
             +LI+      D+G   C   N  G       L 
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 6e-11
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI-THTDR 602
           AP      K  +          +K +    G P PT RWL NG+      R       ++
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           + +L +     +D+G Y     N  G    ++ + V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 400
           +    G PG+P      P        + W PP  D    +  Y + ++        R + 
Sbjct: 4   VITQTGVPGQPLNFKAEP-ESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRIT- 58

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
            +   T   + GL+P   Y FR+ A +  G       +  ++  
Sbjct: 59  -IEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS---TAEISAR 98

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA 737
           ++     G PG+P      P        + W PP  D    +  Y + ++        R 
Sbjct: 2   IQVITQTGVPGQPLNFKAEP-ESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI 57

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           +  +   T   + GL+P   Y FR+ A +  G       +  ++  
Sbjct: 58  T--IEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS---TAEISAR 98

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P      +      +      ++ W+ PE   G  +L Y +++          ++    
Sbjct: 3   APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK-A 56

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             T   VSGL+PG RY F++ A    G       S+ + V 
Sbjct: 57  VTTRATVSGLKPGTRYVFQVRARTSAGCGRF---SQAMEVE 94

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P      +      +      ++ W+ PE   G  +L Y +++          ++    
Sbjct: 3   APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLK-A 56

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             T   VSGL+PG RY F++ A    G       S+ + V 
Sbjct: 57  VTTRATVSGLKPGTRYVFQVRARTSAGCGRF---SQAMEVE 94

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 2e-14
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR 736
           +VE+   P  PG P        +    F I W+PP+ +GG+ +  Y+VE     +     
Sbjct: 1   VVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWE 60

Query: 737 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              +     E +   L PG  Y+ R+   +  G S     SE L V 
Sbjct: 61  MI-YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQ 103

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            PG P KP +      +    F I W+PP+ +GG+ +  Y+VE     +        +  
Sbjct: 10  KPGIPVKPSVKGK---IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMI-YSG 65

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              E +   L PG  Y+ R+   +  G S     SE L V 
Sbjct: 66  ATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQ 103

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P ++  + DT A     + ++    G P P V W +DG  + S  R  +        L  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE----LRF 57

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            +  L D G  +C A N+ G     A L ++A
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
           ++G  ++     +G P P  RWL +G+PL S  R E++       LR S     D G YQ
Sbjct: 14  DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQ 69

Query: 621 AHGVNSLGEDVASFLVTV 638
               N  G   AS  +TV
Sbjct: 70  CVAENKHGTVYASAELTV 87

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (164), Expect = 3e-14
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P PP    L        +    ++W PP       G   + Y +  +   +  W      
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEI--HF 60

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 444
               T+  V  L PG +Y  +   +   G+ S     S+  +V 
Sbjct: 61  TGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRW---SQESSVE 101

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (164), Expect = 3e-14
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 740
           P PP    L        +    ++W PP       G   + Y +  +   +  W      
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEI--HF 60

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 783
               T+  V  L PG +Y  +   +   G+ S     S+  +V 
Sbjct: 61  TGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRW---SQESSVE 101

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PP    ++            + W+PP    G  + GY++ +    +          V
Sbjct: 11  PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 67

Query: 404 --EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                   +  L     Y F+I A N  G    GP+SE +   
Sbjct: 68  VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFR 107

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PP    ++            + W+PP    G  + GY++ +    +          V
Sbjct: 11  PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 67

Query: 743 --EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                   +  L     Y F+I A N  G    GP+SE +   
Sbjct: 68  VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFR 107

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 451 AAPSFIRALHD-TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
           +AP + +         + + V    +V G+P P V W  +   +   R     +      
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----- 55

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
           L+I      D+G   C ATN  G    +  ++
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           + P     ++ E  ++ + G+ + +   + G+P P   W HN +P  SGGR  +T +   
Sbjct: 1   SAPKYE--QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP-LSGGRATVTDS--- 54

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
             L I   +  D+G Y     N  G+     LV V
Sbjct: 55  -GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 5e-14
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 17/139 (12%)

Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS--------PVLGYLV 385
           G +     +       KP        +      + W PP               + GY V
Sbjct: 7   GDEETKAFEALLSNIVKPVA----SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEV 62

Query: 386 EHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
               TG     ++     E+T + ++ L+P   Y  ++ AE       P   SE    T 
Sbjct: 63  LISSTGKDGKYKSVYV-GEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIFTT 118

Query: 446 QRSPAAAPSFIRALHDTTA 464
                  P+  R +   ++
Sbjct: 119 LSCEPDIPNPPR-ISGPSS 136

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 3e-13
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 17/129 (13%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS--------PVLGYLVEHRRTGSPYW 734
                 KP        +      + W PP               + GY V    TG    
Sbjct: 17  LLSNIVKPVA----SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGK 72

Query: 735 VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
            ++     E+T + ++ L+P   Y  ++ AE       P   SE    T        P+ 
Sbjct: 73  YKSVYV-GEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIFTTLSCEPDIPNP 128

Query: 795 IRALHDTTA 803
            R +   ++
Sbjct: 129 PR-ISGPSS 136

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 9e-14
 Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P PP   +L             + W P + +        +        P        + 
Sbjct: 16  VPNPPFDLELT----DQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
                    L P   Y FR+ A N +G S P   SE    T    P   P+
Sbjct: 72  GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPT 121

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 9e-14
 Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P PP   +L             + W P + +        +        P        + 
Sbjct: 16  VPNPPFDLELT----DQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                    L P   Y FR+ A N +G S P   SE    T    P   P+
Sbjct: 72  GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPT 121

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.1 bits (160), Expect = 9e-14
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 452 APSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
            P F      T   E   +EKV  T +    P     W  +G E+      R        
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-D 62

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLR 541
            +I +     D G  +C ATN  G  +++ A LR
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
            E + L       PP T RW  NG  L  G           L +  +  +  D G YQ  
Sbjct: 22  EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL-VISNPVKAKDAGSYQCV 80

Query: 623 GVNSLGEDV 631
             N+ G  V
Sbjct: 81  ATNARGTVV 89

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 66.1 bits (160), Expect = 9e-14
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTD 504
           +  P   P F + + D   +E     F  +VEG P P+V W+KD   +  S   Q    +
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61

Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
               +L I +    D+ +  C A N  G +   A L +E 
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 538 ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE- 596
           A  +    P     K   D  + E G   +    + G P P   W  +  P+     ++ 
Sbjct: 1   AEEKPHVKPYFT--KTILDMEVVE-GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 57

Query: 597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
               +   +L IS+    D  +Y    VNSLGE   +  + V
Sbjct: 58  DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P  P L            +++W  P        + Y++E     S Y  +      E
Sbjct: 1   PSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG-E 55

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           D    V  L    +Y+F++ A N  G S P   SE +  T
Sbjct: 56  DLAYTVKNLRRSTKYKFKVIAYNSEGKSNP---SEVVEFT 92

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P  P L            +++W  P        + Y++E     S Y  +      E
Sbjct: 1   PSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG-E 55

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           D    V  L    +Y+F++ A N  G S P   SE +  T
Sbjct: 56  DLAYTVKNLRRSTKYKFKVIAYNSEGKSNP---SEVVEFT 92

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-13
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P PP    +   + +      ++ W+    ++     L + + +R   S  +       +
Sbjct: 2   PDPPANITVTAVARN--PRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL 59

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           +    ++     G R+  ++ A+   G  E    S     T
Sbjct: 60  Q-HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-13
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P PP    +   + +      ++ W+    ++     L + + +R   S  +       +
Sbjct: 2   PDPPANITVTAVARN--PRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL 59

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           +    ++     G R+  ++ A+   G  E    S     T
Sbjct: 60  Q-HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 99

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
            P   P    L   +         I W+P         + GY + +R+      V  +  
Sbjct: 10  VPSAAPQNLSLEVRNS----KSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 65

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                  ++ GL+ G  Y FR+ A  + G    GP ++ L+  
Sbjct: 66  SGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAE 105

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P   P    L   +         I W+P         + GY + +R+      V  +   
Sbjct: 11  PSAAPQNLSLEVRNS----KSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVS 66

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                 ++ GL+ G  Y FR+ A  + G    GP ++ L+  
Sbjct: 67  GTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAE 105

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
           PG+P ++  + +   +   ++W PP+   G  +LGY +++ R              +D  
Sbjct: 1   PGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-KDDQH 56

Query: 408 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             V+GL  G  Y FR+ A+N  G  E     E    T
Sbjct: 57  FTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRT 90

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 746
           PG+P ++  + +   +   ++W PP+   G  +LGY +++ R              +D  
Sbjct: 1   PGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-KDDQH 56

Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             V+GL  G  Y FR+ A+N  G  E     E    T
Sbjct: 57  FTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRT 90

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 3e-13
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 14/107 (13%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 402
           PP  P     L        +    +WEP   +   P    L   R      +   +    
Sbjct: 4   PPASPSNLSCLMHL---TTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDC 59

Query: 403 -----VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                  +  +    L         + AEN++G SE    S  L + 
Sbjct: 60  VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSE----SPKLCLD 102

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 3e-13
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 14/107 (13%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 741
           PP  P     L        +    +WEP   +   P    L   R      +   +    
Sbjct: 4   PPASPSNLSCLMHL---TTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDC 59

Query: 742 -----VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                  +  +    L         + AEN++G SE    S  L + 
Sbjct: 60  VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSE----SPKLCLD 102

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 4e-13
 Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 14/103 (13%)

Query: 453 PSFIRAL-HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-------------RR 498
           P     L  + + +    VEF  +V     P + W K   +  S                
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 499 QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
               TD +I  L I      D GE  C A N  G S   A L 
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS-------------GGRYEITHTDRYLNLRIS 609
           G  ++    +     P  +W+ + E   S                   T       L I 
Sbjct: 20  GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 79

Query: 610 DARRADRGEYQAHGVNSLGEDVASFLVTV 638
           +    D GEY     NS+G    S  +TV
Sbjct: 80  NVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-13
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 17/119 (14%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P   PG  ++   +      +  + W+P P       + GY + + +T S          
Sbjct: 14  PMVAPGNVRVNVVNS----TLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIE 69

Query: 403 VE-------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            +        T  M+ GLEP   Y   +   N  G    GP S            + PS
Sbjct: 70  KKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTP--EGSGPS 123

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-13
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 17/119 (14%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P   PG  ++   +      +  + W+P P       + GY + + +T S          
Sbjct: 14  PMVAPGNVRVNVVNS----TLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIE 69

Query: 742 VE-------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            +        T  M+ GLEP   Y   +   N  G    GP S            + PS
Sbjct: 70  KKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTP--EGSGPS 123

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 8/77 (10%), Positives = 15/77 (19%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
            + WE             +  +    S +             +     +P      R+ A
Sbjct: 17  IVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKA 76

Query: 426 ENVVGFSEPGPLSEPLT 442
                 S      E   
Sbjct: 77  RVGQKESAYAKSEEFAV 93

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 8/77 (10%), Positives = 15/77 (19%)

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764
            + WE             +  +    S +             +     +P      R+ A
Sbjct: 17  IVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKA 76

Query: 765 ENVVGFSEPGPLSEPLT 781
                 S      E   
Sbjct: 77  RVGQKESAYAKSEEFAV 93

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           P PP      P   +       + W+ P    D  S  L + + +R      W      +
Sbjct: 8   PDPPENVVARPVPSN--PRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH--VEL 63

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              T   ++    G  Y  ++ A++          S     T
Sbjct: 64  SNGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHAT 104

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           P PP      P   +       + W+ P    D  S  L + + +R      W      +
Sbjct: 8   PDPPENVVARPVPSN--PRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH--VEL 63

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              T   ++    G  Y  ++ A++          S     T
Sbjct: 64  SNGTAHTITDAYAGKEYIIQVAAKD-NEIGTWSDWSVAAHAT 104

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
              PGPP    +     ++     T+++ P    G + +  +LVE +             
Sbjct: 8   PELPGPPTNLGIS----NIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLI 62

Query: 741 -----MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
                  +   + V  L P   Y FR+   N+VG S P   S  + 
Sbjct: 63  HQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH-- 401
            PGPP    +     ++     T+++ P    G + +  +LVE +               
Sbjct: 10  LPGPPTNLGIS----NIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLIHQ 64

Query: 402 ---MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
                +   + V  L P   Y FR+   N+VG S P   S  + 
Sbjct: 65  LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 1e-12
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 402
            PG P   ++  +   +      + WEPP    G  +L Y        +      S  + 
Sbjct: 7   GPGAPSTVRISKNVDGI-----HLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVF 60

Query: 403 --------------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 448
                                           FRI+A+N  G+   GP ++   +  Q +
Sbjct: 61  MRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGY---GPATQIRWL--QGN 115

Query: 449 PAAAPS 454
             + PS
Sbjct: 116 SKSGPS 121

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 1e-12
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 741
            PG P   ++  +   +      + WEPP    G  +L Y        +      S  + 
Sbjct: 7   GPGAPSTVRISKNVDGI-----HLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVF 60

Query: 742 --------------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 787
                                           FRI+A+N  G+   GP ++   +  Q +
Sbjct: 61  MRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGY---GPATQIRWL--QGN 115

Query: 788 PAAAPS 793
             + PS
Sbjct: 116 SKSGPS 121

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--RIVTDNDISTLII 512
             + L DTTA   E+VE   +V       V W+K+G EI    +   RI  +     LII
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLE 543
             A   D  E     T       + A+L ++
Sbjct: 62  EGATKADAAEYSVMTTG----GQSSAKLSVD 88

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY--EITHTDRYLNLRISDARRADRGEYQ 620
           GE ++L+  ++       +W  NGE +  G +    I    +   L I  A +AD  EY 
Sbjct: 15  GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 73

Query: 621 AHGVNSLGEDVASFLVTVTDR 641
                       S  ++V  +
Sbjct: 74  VMTTGGQS----SAKLSVDLK 90

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 8/121 (6%)

Query: 676 YIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 735
           Y V+    P PP    ++         +  + W  P       +   +    +  S +  
Sbjct: 1   YKVK----PNPPHNLSVINSEEL--SSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 54

Query: 736 RASPHMVED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPS 793
                     +   V  L+P   Y FRI      G       SE  +  TY+  P+  PS
Sbjct: 55  IPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114

Query: 794 F 794
           F
Sbjct: 115 F 115

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 1e-11
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P PP    ++         +  + W  P       +   +    +  S +          
Sbjct: 5   PNPPHNLSVINSEEL--SSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 62

Query: 405 D-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSF 455
             +   V  L+P   Y FRI      G       SE  +  TY+  P+  PSF
Sbjct: 63  TRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 115

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRA 398
           +++  P  P    +   +         I WE    +  SP+L Y ++   + +P  W  A
Sbjct: 1   IVQDVPNAPKLTGITCQADKA-----EIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAA 54

Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
              +       V  + P   Y FR+ A N +G S P   S+  T
Sbjct: 55  YEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT 98

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 61.2 bits (147), Expect = 6e-12
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 741
            P  P    +   +         I WE    +  SP+L Y ++   + +P  W  A   +
Sbjct: 5   VPNAPKLTGITCQADKA-----EIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKV 58

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
                  V  + P   Y FR+ A N +G S P   S+  T
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT 98

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 27/195 (13%), Positives = 43/195 (22%), Gaps = 57/195 (29%)

Query: 641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR------------------ 682
            P  P     V      + L W  P D  G  I +Y+V + R                  
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGLK 60

Query: 683 ------------------------------PPGPPGKPQLLPDS-----PSLDRDVFTIR 707
                                            P    Q+L +           D     
Sbjct: 61  LPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNV 120

Query: 708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 767
              P        LG +                +      L++SGL     Y+  + A N 
Sbjct: 121 VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN---KESLVISGLRHFTGYRIELQACNQ 177

Query: 768 VGFSEPGPLSEPLTV 782
               E   ++  ++ 
Sbjct: 178 DTPEERCSVAAYVSA 192

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 24/191 (12%), Positives = 51/191 (26%), Gaps = 11/191 (5%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P  P  + +S S       ++W+PP    G  +  YLV   R      +    + +
Sbjct: 2   NPSVPLDPISVSNSSS----QIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCL 56

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
           +          P   +     +E+    ++                 +            
Sbjct: 57  KGL------KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR 110

Query: 464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEI 523
              ++ +   V V      + S    G    +   +      +  +L+I          I
Sbjct: 111 KTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRI 170

Query: 524 KCTATNRAGHS 534
           +  A N+    
Sbjct: 171 ELQACNQDTPE 181

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 19/160 (11%), Positives = 38/160 (23%), Gaps = 9/160 (5%)

Query: 290 YRVRKKFADIIEQKKQAKKT-ADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP 348
           Y V  +      +  +        +  ++        E     N         +    P 
Sbjct: 36  YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPK 95

Query: 349 GKPQLLPDS-----PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              Q+L +           D        P        LG +                +  
Sbjct: 96  TDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN-- 153

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
               L++SGL     Y+  + A N     E   ++  ++ 
Sbjct: 154 -KESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSA 192

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
           +       I W+ P       V  Y + +  TG    V+        +   +SGL+PG  
Sbjct: 7   AATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVD 62

Query: 419 YQFRITAENVVGFSEPGPLSEPLTVTYQ 446
           Y   + A    G S     S+P+++ Y+
Sbjct: 63  YTITVYAVTGRGDSP--ASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
           +       I W+ P       V  Y + +  TG    V+        +   +SGL+PG  
Sbjct: 7   AATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVD 62

Query: 758 YQFRITAENVVGFSEPGPLSEPLTVTYQ 785
           Y   + A    G S     S+P+++ Y+
Sbjct: 63  YTITVYAVTGRGDSP--ASSKPISINYR 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 453 PSFI--RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS--RRQRIVTDNDIS 508
           P+    +++ + TA   + V      +G P P +SW KDG  I +     ++ +  +D S
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            L I      DE E  C A N+AG       L++ A
Sbjct: 64  ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT--DR 602
           PPT++  +   +     +G+ + L     G P PT  W  +GEP+ +    +  H   D 
Sbjct: 3   PPTVQARQSIVN-ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
              L I +  + D  EY     N  GE  AS  + V  +
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 22/89 (24%), Positives = 34/89 (38%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
            +      T  E E   F+   +G P P V+W + G  + +S R ++ T    ST  I  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLE 543
               DEG       N  G    +  L ++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 24/76 (31%), Positives = 36/76 (47%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE  +      G P PT  WL  G+ L++  R+++T T       IS  + +D G Y   
Sbjct: 14  GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 73

Query: 623 GVNSLGEDVASFLVTV 638
             NS G+  A F +T+
Sbjct: 74  VENSEGKQEAEFTLTI 89

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 345 PGPPGKPQ--LLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRAS 399
           P PP      LL  S +       +RWE P       G  VL Y ++++      W    
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           P +   T + V  L+    Y+ R+ ++        G  SE L VT
Sbjct: 61  PIL--TTSVPVYSLKVDKEYEVRVRSKQ-RNSGNYGEFSEVLYVT 102

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 684 PGPPGKPQ--LLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRAS 738
           P PP      LL  S +       +RWE P       G  VL Y ++++      W    
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           P +   T + V  L+    Y+ R+ ++        G  SE L VT
Sbjct: 61  PIL--TTSVPVYSLKVDKEYEVRVRSKQ-RNSGNYGEFSEVLYVT 102

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P   P  P +      +      + W+  + +         +          + +   + 
Sbjct: 15  PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70

Query: 404 E--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
               T  +V GLEP   Y+FR+   +  G  E    S  ++V    +  + PS
Sbjct: 71  TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P   P  P +      +      + W+  + +         +          + +   + 
Sbjct: 15  PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70

Query: 743 E--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
               T  +V GLEP   Y+FR+   +  G  E    S  ++V    +  + PS
Sbjct: 71  TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 7/92 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           P  PP    L  +    D  V T+ WE         + GY +    T           + 
Sbjct: 1   PLSPPTNLHLEANP---DTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54

Query: 404 EDT-ELMVSGLEPGWRYQFRITAENVVGFSEP 434
            D        L PG  Y   +        S P
Sbjct: 55  ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP 86

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 7/92 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           P  PP    L  +    D  V T+ WE         + GY +    T           + 
Sbjct: 1   PLSPPTNLHLEANP---DTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54

Query: 743 EDT-ELMVSGLEPGWRYQFRITAENVVGFSEP 773
            D        L PG  Y   +        S P
Sbjct: 55  ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP 86

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 25/104 (24%)

Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM----------------------- 402
            +RWEP        +LG+++ ++                                     
Sbjct: 19  LLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKS 78

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP--GPLSEPLTVT 444
                 ++ GL+P  +Y   +             G  S+ + V 
Sbjct: 79  QNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 25/104 (24%)

Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM----------------------- 741
            +RWEP        +LG+++ ++                                     
Sbjct: 19  LLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKS 78

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP--GPLSEPLTVT 783
                 ++ GL+P  +Y   +             G  S+ + V 
Sbjct: 79  QNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 31/129 (24%)

Query: 543 EAPPTIRL--PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT---------- 590
           + PP I L  P +  D ++   G  ++L V ++G P PT  W                  
Sbjct: 2   QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDA 61

Query: 591 -------------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
                              + GR  +  T       +  A + D G Y     N +GED 
Sbjct: 62  PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 121

Query: 632 ASFLVTVTD 640
            +  V V D
Sbjct: 122 VNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 29/111 (26%)

Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR---------------------- 497
                +   K+   V + G P P V W K   +   +                       
Sbjct: 17  DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 76

Query: 498 -------RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
                  R R+ T  D S   +  A   DEG    T  N  G       ++
Sbjct: 77  LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 7e-12
 Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 1/103 (0%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
             PP         PD  S       + W+P +          L    +     W      
Sbjct: 2   LEPPMLQALDIG-PDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHL 60

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                +  + GL     Y  ++            P S  L + 
Sbjct: 61  PSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 1/102 (0%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           +PP         PD  S       + W+P +          L    +     W       
Sbjct: 3   EPPMLQALDIG-PDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP 61

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
               +  + GL     Y  ++            P S  L + 
Sbjct: 62  SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE---IFSSRRQRIVTDNDIS 508
            P F+R + +      +   F     G        +  G +         +   +   I+
Sbjct: 2   TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARL 540
           +  +      D G+ +C      G  I+  A L
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 563 GEIIKLKVSMAGMPPPTARWL---HNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
           G+    + S  G      R      +            +      +  + +  + D G+Y
Sbjct: 16  GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 75

Query: 620 QAHGVNSLGEDVASF 634
           +       G  ++++
Sbjct: 76  RCMIRTEGGVGISNY 90

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 7e-12
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND----- 506
           PS       ++A    +   T    +G P  + +W+KDG  + ++ +      N      
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 507 --ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
                L+    +  D GE  C A N  G  +T   +R+EA
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 11/102 (10%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           PP+   P           G    L      G PP    W  +G  + +  +     ++  
Sbjct: 2   PPSK--PTVNIPSSATI-GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 604 L-------NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
                    L       +D GEY     N  G  + S  V +
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P PP +  +    P   +    I+W PP   +   G   L Y +  +   +  W      
Sbjct: 3   PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--HF 60

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             + TE  +  L PG +Y  ++  +   G+      S    + 
Sbjct: 61  AGQQTEFKILSLHPGQKYLVQVRCKPDHGY--WSAWSPATFIQ 101

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
           P PP +  +    P   +    I+W PP   +   G   L Y +  +   +  W      
Sbjct: 3   PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--HF 60

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             + TE  +  L PG +Y  ++  +   G+      S    + 
Sbjct: 61  AGQQTEFKILSLHPGQKYLVQVRCKPDHGY--WSAWSPATFIQ 101

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
                   +L+   P        + W           L Y +        +       MV
Sbjct: 2   ESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWH-----QMV 52

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
            +  ++++ L+P   Y  R+     +G   PGP S      
Sbjct: 53  LEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPDHEFR 90

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
                   +L+   P        + W           L Y +        +       MV
Sbjct: 2   ESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWH-----QMV 52

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            +  ++++ L+P   Y  R+     +G   PGP S      
Sbjct: 53  LEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPDHEFR 90

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 1/103 (0%)

Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
             PP         P++         + WEP +          L    + G   W    P 
Sbjct: 1   LEPPMLRTMDPS-PEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPL 59

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
            +E  +  + GL P   Y  +I              S  L + 
Sbjct: 60  PLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 3e-11
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 4/100 (4%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
                 P+  P           + WEP +          L    + G   W    P  +E
Sbjct: 7   RTMDPSPEAAPPQA----GCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLE 62

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             +  + GL P   Y  +I              S  L + 
Sbjct: 63  ALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
            +  + FT+ W  P     + + GY + H         R          + ++ L PG  
Sbjct: 11  DITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTE 66

Query: 419 YQFRITAENVVGFSEP 434
           Y   I A N    S  
Sbjct: 67  YVVSIVALNGREESPL 82

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
            +  + FT+ W  P     + + GY + H         R          + ++ L PG  
Sbjct: 11  DITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTE 66

Query: 758 YQFRITAENVVGFSEP 773
           Y   I A N    S  
Sbjct: 67  YVVSIVALNGREESPL 82

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND----- 506
           PS       ++     +   T    +G P  + SW+KDG  + ++  ++     +     
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 507 ---ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
                 LI       D GE  C A N  G ++      ++A
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 14/112 (12%)

Query: 545 PPTI-RLPKQYEDGLLFEMGEIIKLKV-SMAGMPPPTARWLHNGEPLTSGGRYEI----- 597
           PP+   +           +G    L      G PP    W  +G  + +    +      
Sbjct: 2   PPSKPTISVPSS----VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 57

Query: 598 ---THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
              T   +  +L        D GEY     N  G  + S    +    L  G
Sbjct: 58  SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 109

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 452 APSFIRAL-HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
           APS       DT AL  + V       G P P++ W K          Q     +    L
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG------SQTSKWLSSEPLL 57

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
            I      DEG  +C A N  G    + R+ + A
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
           +  P+I+   ++        G+++ L+    G P P  +W                    
Sbjct: 2   QYAPSIK--AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------QTSKWLSS 53

Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
              L I +    D G Y+    N  G D     + +
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P     PQ+   S +       + WE P  +G   V  Y +E         +        
Sbjct: 1   PDQCKPPQVTCRSAT----CAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQICYCGP--- 52

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                + GL P   Y  R+ A +VVG       SE +   
Sbjct: 53  GLSYEIKGLSPATTYYCRVQALSVVGAGPF---SEVVACV 89

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P     PQ+   S +       + WE P  +G   V  Y +E         +        
Sbjct: 1   PDQCKPPQVTCRSAT----CAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQICYCGP--- 52

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                + GL P   Y  R+ A +VVG       SE +   
Sbjct: 53  GLSYEIKGLSPATTYYCRVQALSVVGAGPF---SEVVACV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 5e-11
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND--IS 508
            AP         T  + + V+    VEG+  P + W KDG  + +  +  I       I 
Sbjct: 1   GAPV------KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 54

Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLE 543
            L +      D G   C   +     I++   L +E
Sbjct: 55  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQ 620
           G+ +KL  S+ GM  P  +W+ +G  + +       ++       L +    R+D G Y 
Sbjct: 11  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 70

Query: 621 AHGVNSLGEDV-ASFLVTVT 639
               +    ++     +TV 
Sbjct: 71  CQVEDGGETEISQPVWLTVE 90

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 5e-11
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 356 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 409
           D+P      +   +   + W+PP         GY++++ + GSP            TE  
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPRARIT----GYIIKYEKPGSPPREVVPRPRPGVTEAT 57

Query: 410 VSGLEPGWRYQFRITAENVVGFSEP 434
           ++GLEPG  Y   + A      SEP
Sbjct: 58  ITGLEPGTEYTIYVIALKNNQKSEP 82

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 5e-11
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 695 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 748
           D+P      +   +   + W+PP         GY++++ + GSP            TE  
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPRARIT----GYIIKYEKPGSPPREVVPRPRPGVTEAT 57

Query: 749 VSGLEPGWRYQFRITAENVVGFSEP 773
           ++GLEPG  Y   + A      SEP
Sbjct: 58  ITGLEPGTEYTIYVIALKNNQKSEP 82

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 1e-10
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-------SRRQRIVTDNDIST 509
            ++   TA+E         V+G P P + W  +G  +                       
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
           L ++Q   ++ G     A N  G +           P    P
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 5e-09
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEI-------THTDRYLNLRISDARRADRGEYQ 620
           +  S+ G P P+ RWL NG  L                 T R+  LR++     + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 621 AHGVNSLGEDVASFLVTVTDRP 642
               N  G+  AS +    D P
Sbjct: 80  LLAANPFGQASASIMAAFMDNP 101

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P     +      D +   +       DGGSP+  YLV +R   S +          
Sbjct: 1   PSAPKLEGQM----GEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPE-IRLPSG 54

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 438
              +M+  L+    Y+  + AEN  G S+     
Sbjct: 55  SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 88

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P     +      D +   +       DGGSP+  YLV +R   S +          
Sbjct: 1   PSAPKLEGQM----GEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPE-IRLPSG 54

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 777
              +M+  L+    Y+  + AEN  G S+     
Sbjct: 55  SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFV 88

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P        +        T+ W     + G       V      +   +  +   V
Sbjct: 3   APTAPTNLASTAQTT----SSITLSWTASTDNVG-------VTGYDVYNGTALATT---V 48

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             T   +SGL     Y F + A++  G       S  ++V 
Sbjct: 49  TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P        +        T+ W     + G       V      +   +  +   V
Sbjct: 3   APTAPTNLASTAQTT----SSITLSWTASTDNVG-------VTGYDVYNGTALATT---V 48

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             T   +SGL     Y F + A++  G       S  ++V 
Sbjct: 49  TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 13/92 (14%), Positives = 24/92 (26%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
            P  + A               V   G P P  +W         +    +   +  +++ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
              A   D G  K    N  G       + ++
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 24/76 (31%), Positives = 30/76 (39%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           G    L+V   G P PTA W              +       ++    A+RAD G Y+  
Sbjct: 17  GFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLK 76

Query: 623 GVNSLGEDVASFLVTV 638
             N LGED A F V V
Sbjct: 77  VKNELGEDEAIFEVIV 92

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PP   +     P    D   + W PP       +  +LV +    +   V        D 
Sbjct: 3   PPTDLRFTNIGP----DTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDN 55

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
            ++++ L PG  Y   +++      S P
Sbjct: 56  AVVLTNLLPGTEYVVSVSSVYEQHESTP 83

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           PP   +     P    D   + W PP       +  +LV +    +   V        D 
Sbjct: 3   PPTDLRFTNIGP----DTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDN 55

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
            ++++ L PG  Y   +++      S P
Sbjct: 56  AVVLTNLLPGTEYVVSVSSVYEQHESTP 83

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 6/95 (6%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
           PP  P     +      +       W+            + ++       +    +    
Sbjct: 3   PPEKPKNLSCI----VNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDT 56

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 438
             +  +          +  + AEN +G      ++
Sbjct: 57  PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 91

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 6/95 (6%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
           PP  P     +      +       W+            + ++       +    +    
Sbjct: 3   PPEKPKNLSCI----VNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDT 56

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 777
             +  +          +  + AEN +G      ++
Sbjct: 57  PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 91

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P          + +     +RW PP     +  + Y V+         V+    + 
Sbjct: 4   LLDAPVGLVA---RLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILE 60

Query: 404 EDTELMVSGLEPGWRYQFRITA--ENVVGFSEPGPLSEPLTVT 444
             TE ++S L    RY F + A              SEP+++ 
Sbjct: 61  GRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLL 103

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P          + +     +RW PP     +  + Y V+         V+    + 
Sbjct: 4   LLDAPVGLVA---RLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILE 60

Query: 743 EDTELMVSGLEPGWRYQFRITA--ENVVGFSEPGPLSEPLTVT 783
             TE ++S L    RY F + A              SEP+++ 
Sbjct: 61  GRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLL 103

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 9/105 (8%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASP 739
            P   P         P    +   I W P             Y+   R   +  W   + 
Sbjct: 3   VPFKNPDNVVGQGTEP----NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNI 58

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
                  ++++      +Y  ++ A N  G      ++    V Y
Sbjct: 59  FDWRQNNIVIADQPTFVKYLIKVVAINDRG---ESNVAAEEVVGY 100

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 55.7 bits (133), Expect = 5e-10
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 9/104 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
           P   P         P    +   I W P             Y+   R   +  W   +  
Sbjct: 4   PFKNPDNVVGQGTEP----NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF 59

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
                 ++++      +Y  ++ A N  G      ++    V Y
Sbjct: 60  DWRQNNIVIADQPTFVKYLIKVVAINDRG---ESNVAAEEVVGY 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 5e-10
 Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 8/97 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKV-------SWYKDGFEIFSSRRQRIVTDN 505
           P            E E      + E +P                     S  R  + +  
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 506 DISTLIIHQAALMD-EGEIKCTATNRAGHSITKARLR 541
             S L I    +    G+ +C  T+  G       LR
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT-------ARWLHNGEPLTSGGRYEI 597
           PP ++  K  E       GE   L      +PP T                  S  R+ +
Sbjct: 2   PPRVKAVKSSEHI---NEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 58

Query: 598 THTDRYLNLRISDARRADR-GEYQAHGVNSLGEDVASFLVTV 638
           + +     L I +       G+Y+ +G +S G D A   + V
Sbjct: 59  SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 7e-10
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 7/101 (6%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-----IVTDNDI 507
              I  L   T+     + FTV  +G P P + W+ +G  +  S+               
Sbjct: 4   APTITFLESPTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
             L +     M+ G+    A N  G    +        P I
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-----EITH 599
            PTI   +               +  ++ G P P  +W +NG  L              H
Sbjct: 4   APTITFLESPT------SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
           T+ +  L++ +    + G+Y     N  G+D           P
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
             F  A       E E       V     P + W   G ++   +  R +  ++     I
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-QI 60

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRL 542
                 DEG  +C     A   I    +++
Sbjct: 61  RGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
           GE   +   +    PPT  W H G  +                L+I   ++ D G Y+  
Sbjct: 16  GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCE 74

Query: 623 GVNSLGEDVASFLVTVT 639
           G      ++    + V 
Sbjct: 75  GRILARGEINFKDIQVI 91

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 9e-10
 Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 11/112 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP-----VLGYLVEHRRTGSPYWVRA 398
            P  P   Q+     S D+D F + W        S       L + V ++R    +   A
Sbjct: 5   QPPEPRDLQI-----STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA 59

Query: 399 SPH-MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
                     L    L P   Y  R+      G    G  S+        S 
Sbjct: 60  ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 111

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 9e-10
 Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 11/112 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP-----VLGYLVEHRRTGSPYWVRA 737
            P  P   Q+     S D+D F + W        S       L + V ++R    +   A
Sbjct: 5   QPPEPRDLQI-----STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA 59

Query: 738 SPH-MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
                     L    L P   Y  R+      G    G  S+        S 
Sbjct: 60  ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 111

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 354 LPDSPSLDRDVF----TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE---DT 406
           LP  PS+  +       + W P      S    Y V   R G   W   S        D 
Sbjct: 4   LPSPPSVWFEAEFFHHILHWTPIPQQSEST--CYEVALLRYGIESWNSISQCSQTLSYDL 61

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
             +   L     Y+ R+ A +    S+    +   +V
Sbjct: 62  TAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSV 98

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 693 LPDSPSLDRDVF----TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE---DT 745
           LP  PS+  +       + W P      S    Y V   R G   W   S        D 
Sbjct: 4   LPSPPSVWFEAEFFHHILHWTPIPQQSEST--CYEVALLRYGIESWNSISQCSQTLSYDL 61

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
             +   L     Y+ R+ A +    S+    +   +V
Sbjct: 62  TAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSV 98

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR------------TGSPY 394
           PP  P +      L  +   +RW  P  DG  P++ + V++R                  
Sbjct: 2   PPTPPNVT----RLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 56

Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
             + +  + +     V+ L+P   Y+FRI A      ++    S    +
Sbjct: 57  KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 105

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR------------TGSPY 733
           PP  P +      L  +   +RW  P  DG  P++ + V++R                  
Sbjct: 2   PPTPPNVT----RLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 56

Query: 734 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
             + +  + +     V+ L+P   Y+FRI A      ++    S    +
Sbjct: 57  KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 105

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP-EYDGGSPVLGYLVEHRRTGSP--YWVRASP 400
           P   P        + +       ++W      +  +P+ G+ + +R T S      +   
Sbjct: 1   PVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 56

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
              +     +S L+P   Y  ++   N  G SE    S  +   
Sbjct: 57  VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 97

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP-EYDGGSPVLGYLVEHRRTGSP--YWVRASP 739
           P   P        + +       ++W      +  +P+ G+ + +R T S      +   
Sbjct: 1   PVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 56

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
              +     +S L+P   Y  ++   N  G SE    S  +   
Sbjct: 57  VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 97

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 18/104 (17%), Positives = 25/104 (24%), Gaps = 11/104 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP---VLGYLVEHRRTGSPYWVRASP 400
           P  PP   Q    S         I W                Y V  +        +   
Sbjct: 1   PMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIP-ANTKYKN 55

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                   +V+GL+P   Y+F +        S     S     T
Sbjct: 56  ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGT 96

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 18/104 (17%), Positives = 25/104 (24%), Gaps = 11/104 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP---VLGYLVEHRRTGSPYWVRASP 739
           P  PP   Q    S         I W                Y V  +        +   
Sbjct: 1   PMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIP-ANTKYKN 55

Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                   +V+GL+P   Y+F +        S     S     T
Sbjct: 56  ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGT 96

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
            P       +    E+        +EG        +K   + ++ +        D  +L+
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 512 IHQAALMDEGEIKCTATNRAGHSITK-ARLR 541
             +    DEG  +C A   AG + ++    R
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRVISFR 92

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP          + D D +++RWE  +         + +++R+  + +    +  + 
Sbjct: 5   QMAPPSL------QVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ 58

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 440
               + +  LEP  RY  R+           G  SE 
Sbjct: 59  NAHSMALPALEPSTRYWARVRVRTSRT-GYNGIWSEW 94

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP          + D D +++RWE  +         + +++R+  + +    +  + 
Sbjct: 5   QMAPPSL------QVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ 58

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 779
               + +  LEP  RY  R+           G  SE 
Sbjct: 59  NAHSMALPALEPSTRYWARVRVRTSRT-GYNGIWSEW 94

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 356 DSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 409
           D P       +D D   I WE P+         Y V +                E+    
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQGQVSR----YRVTYSSPEDGIHELFPAPDGEEDTAE 58

Query: 410 VSGLEPGWRYQFRITAENVVGFSEP 434
           + GL PG  Y   + A +    S+P
Sbjct: 59  LQGLRPGSEYTVSVVALHDDMESQP 83

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 695 DSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 748
           D P       +D D   I WE P+         Y V +                E+    
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQGQVSR----YRVTYSSPEDGIHELFPAPDGEEDTAE 58

Query: 749 VSGLEPGWRYQFRITAENVVGFSEP 773
           + GL PG  Y   + A +    S+P
Sbjct: 59  LQGLRPGSEYTVSVVALHDDMESQP 83

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 12/106 (11%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKD---------GFEIFSSRRQ 499
              F+    D        + F+ +V G      P V W+K          G  +      
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
              +   +  L I  A     G  +C  + +     +   L +   
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 12/92 (13%)

Query: 561 EMGEIIKLKVSMAGMPPPTA------------RWLHNGEPLTSGGRYEITHTDRYLNLRI 608
            +G  I     +AG                       G+ L     Y+         L I
Sbjct: 17  TVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 609 SDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
           +DA+ A  G Y+         D ++F +TV +
Sbjct: 77  TDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT----GSPYWVRA 737
                      L +   L      + W          + GY V +R+T     +  W   
Sbjct: 10  VQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNL 67

Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
              +  +   ++  L+ G  Y+ ++           G  SE  TV       + PS
Sbjct: 68  DAKVPTERSAVLVNLKKGVTYEIKVRPYFNEF---QGMDSESKTVRTT--EESGPS 118

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT----GSPYWVRASPHMV 403
                 L +   L      + W          + GY V +R+T     +  W      + 
Sbjct: 15  GDVLVRLHNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVP 72

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            +   ++  L+ G  Y+ ++           G  SE  TV       + PS
Sbjct: 73  TERSAVLVNLKKGVTYEIKVRPYFNEF---QGMDSESKTVRTT--EESGPS 118

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 13/102 (12%), Positives = 22/102 (21%), Gaps = 8/102 (7%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-- 402
           P  PG   +  +      D   + W  P                            +   
Sbjct: 2   PRAPGNLTVHTNVS----DTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVT 57

Query: 403 --VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
                  +  S L+ G  Y+ R+ A      +     S    
Sbjct: 58  YLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 13/102 (12%), Positives = 22/102 (21%), Gaps = 8/102 (7%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-- 741
           P  PG   +  +      D   + W  P                            +   
Sbjct: 2   PRAPGNLTVHTNVS----DTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVT 57

Query: 742 --VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
                  +  S L+ G  Y+ R+ A      +     S    
Sbjct: 58  YLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 356 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 409
           D+P             ++RW  P     +    Y + +            P  V+ T  +
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--VDSTSFI 54

Query: 410 VSGLEPGWRYQFRITAENVVGFSEP 434
           + GL+ G  Y   + AE     S+P
Sbjct: 55  LRGLDAGTEYTISLVAEKGRHKSKP 79

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 695 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 748
           D+P             ++RW  P     +    Y + +            P  V+ T  +
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--VDSTSFI 54

Query: 749 VSGLEPGWRYQFRITAENVVGFSEP 773
           + GL+ G  Y   + AE     S+P
Sbjct: 55  LRGLDAGTEYTISLVAEKGRHKSKP 79

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV--TDNDIST 509
            P ++    D  A   +           P    +++K+G ++  +   RI          
Sbjct: 5   VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKA 538
           L+       DEG   C   N  G     +
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 550 LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN--LR 607
           +P+     ++ + G++  +       P     +  NG+ +       IT  +R     L 
Sbjct: 5   VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 64

Query: 608 ISDARRADRGEYQAHGVNSLGEDVA-SFLVTV 638
                  D G Y     N +G+    S  +TV
Sbjct: 65  FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
           TV Y       P  + +L +     +  +EF V   G P P + W  +G  +  S+   +
Sbjct: 1   TVYY-------PPRVVSLEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHV 51

Query: 502 V----TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
                 +     L+ ++    + G     A N  G +           P
Sbjct: 52  EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG----GRYEITHT 600
           PP +   ++ E  L       I+  V   G PPPT  WLHNG+PL         Y     
Sbjct: 5   PPRVVSLEEPELRLE----HCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 58

Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
                L  +     + G Y     N LG    +        P P 
Sbjct: 59  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 103

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 9/103 (8%), Positives = 22/103 (21%), Gaps = 6/103 (5%)

Query: 453 PSFIR-ALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
           P  +   L  T     +      +V     + +  +  ++    +      +       +
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 509 --TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
             T               C A             +  AP  + 
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLE 104

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 405
           G P  P                 W PP        + Y ++       + + +       
Sbjct: 3   GAPQNPNAKAAGS----RKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSK-----V 53

Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
             + ++ L P   Y+ ++ A    G    GP S  ++  
Sbjct: 54  PSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCR 89

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
           G P  P                 W PP        + Y ++       + + +       
Sbjct: 3   GAPQNPNAKAAGS----RKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSK-----V 53

Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
             + ++ L P   Y+ ++ A    G    GP S  ++  
Sbjct: 54  PSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCR 89

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 8/95 (8%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
                 +  +   +         + WE P     S +L + V    T  P+        +
Sbjct: 3   SRPRLSQLSVTDVTT----SSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 58

Query: 404 E----DTELMVSGLEPGWRYQFRITAENVVGFSEP 434
                    ++  L  G  Y   +        ++ 
Sbjct: 59  MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 93

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 8/95 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
                 +  +   +         + WE P     S +L + V    T  P+        +
Sbjct: 3   SRPRLSQLSVTDVTT----SSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 58

Query: 743 E----DTELMVSGLEPGWRYQFRITAENVVGFSEP 773
                    ++  L  G  Y   +        ++ 
Sbjct: 59  MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 93

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-09
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 9/114 (7%)

Query: 341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 400
           +     PP +P       + D  V     +    +  S V GY V +R +        + 
Sbjct: 11  VTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT 70

Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
           +           L     Y   + A    G    G  SE + +   R  ++ PS
Sbjct: 71  NKTS----AELVLPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 8e-09
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP +P       + D  V     +    +  S V GY V +R +        + +  
Sbjct: 14  KKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKT 73

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
                    L     Y   + A    G    G  SE + +   R  ++ PS
Sbjct: 74  S----AELVLPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 356 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 409
           D+P      S       + W+  E +     + Y            V         T+  
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGI--GPTTKTT 59

Query: 410 VSGLEPGWRYQFRITAENVVGFSEPGPLS 438
           ++ L PG  Y   I+A      S P  ++
Sbjct: 60  LTDLVPGTEYGVGISAVMNSKQSIPATMN 88

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 9e-09
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 695 DSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELM 748
           D+P      S       + W+  E +     + Y            V         T+  
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGI--GPTTKTT 59

Query: 749 VSGLEPGWRYQFRITAENVVGFSEPGPLS 777
           ++ L PG  Y   I+A      S P  ++
Sbjct: 60  LTDLVPGTEYGVGISAVMNSKQSIPATMN 88

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 405
           G P           +  +  T+ W PP     S    Y V +           +      
Sbjct: 2   GSPKGISFS----DITENSATVSWTPPRSRVDS----YRVSYVPITGGTPNVVTVDG-SK 52

Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEP 434
           T   +  L PG  Y   I +      SEP
Sbjct: 53  TRTKLVKLVPGVDYNVNIISVKGFEESEP 81

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
           G P           +  +  T+ W PP     S    Y V +           +      
Sbjct: 2   GSPKGISFS----DITENSATVSWTPPRSRVDS----YRVSYVPITGGTPNVVTVDG-SK 52

Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEP 773
           T   +  L PG  Y   I +      SEP
Sbjct: 53  TRTKLVKLVPGVDYNVNIISVKGFEESEP 81

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-- 402
              P   Q++     ++     I WE  +                +    W  A      
Sbjct: 3   LMAPISLQVV----HVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLK 58

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTVT 444
            +   + +  L P  +Y+F++  + + G F+   P S+PL   
Sbjct: 59  QKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-- 741
              P   Q++     ++     I WE  +                +    W  A      
Sbjct: 3   LMAPISLQVV----HVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLK 58

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTVT 783
            +   + +  L P  +Y+F++  + + G F+   P S+PL   
Sbjct: 59  QKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 455 FIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
            +      +      V F    +   P   + W +       SR       +    L I 
Sbjct: 5   TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNGILTIR 59

Query: 514 QAALMDEGEIKCTATNRAGHSITKARLRLE 543
                D G   CT +N        A L ++
Sbjct: 60  NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           P  + + +Q         G  +     + +  P  T  W             +       
Sbjct: 1   PIMVTVEEQ--RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--- 55

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
             L I + + +D G Y   G N    D  +  + V
Sbjct: 56  --LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
             + L+       E   F +++   P     W   G  + +S    I+ D     LI+H 
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62

Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEA 544
             L   GE+   A N    + + A L+++ 
Sbjct: 63  CQLGMTGEVSFQAAN----AKSAANLKVKE 88

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 402
           P   P   ++   S +       + W          + GY   +R + S      +    
Sbjct: 6   PMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG 61

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
                  ++ LE    Y+F++ + +    SE 
Sbjct: 62  AHARSFKIAPLETATMYEFKLQSFSAASASEF 93

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM- 741
           P   P   ++   S +       + W          + GY   +R + S      +    
Sbjct: 6   PMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG 61

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
                  ++ LE    Y+F++ + +    SE 
Sbjct: 62  AHARSFKIAPLETATMYEFKLQSFSAASASEF 93

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 12/106 (11%)

Query: 455 FIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDGFEIFSSR---------RQRIV 502
           FI      T    E + F  +V+       P + W+K  +   +S+              
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
           +      + I +A     G  +C  T +         L +      
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 12/95 (12%)

Query: 563 GEIIKLKVSMAGMPP---PTARWLHNGEPLTS---------GGRYEITHTDRYLNLRISD 610
           GE I     +        PT +W        +            +E         ++I  
Sbjct: 15  GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 74

Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
           A+    G Y+         D  SF + V +     
Sbjct: 75  AKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 11/100 (11%), Positives = 23/100 (23%), Gaps = 6/100 (6%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
                A   +     +++    QVEG        V   +   E+          +    T
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE---VT 61

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
             +         +  C           +      AP  ++
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQ 101

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 7/102 (6%)

Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
           K     G           + +V  + W+ P+   G  VL  +   R       +  +   
Sbjct: 3   KADDIVGPVTH----EIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKH 58

Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                           Y  RI A ++ G    G  +EP    
Sbjct: 59  FALERGCRLRGLSPGNYSVRIRATSLAG---NGSWTEPTYFY 97

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 5e-08
 Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 7/102 (6%)

Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
           +     G           + +V  + W+ P+   G  VL  +   R       +  +   
Sbjct: 3   KADDIVGPVTH----EIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKH 58

Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                           Y  RI A ++ G    G  +EP    
Sbjct: 59  FALERGCRLRGLSPGNYSVRIRATSLAG---NGSWTEPTYFY 97

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P +  +       +     I+W  P+      +  Y++  R   S    + +       
Sbjct: 2   GPVEVFITETPSQPNS--HPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLN 56

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
              + GL+PG  Y+ ++ +    G  E 
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEV 84

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P +  +       +     I+W  P+      +  Y++  R   S    + +       
Sbjct: 2   GPVEVFITETPSQPNS--HPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLN 56

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
              + GL+PG  Y+ ++ +    G  E 
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEV 84

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-08
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
            P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W        
Sbjct: 2   TPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 56

Query: 404 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
           E      + + GL+P   Y  R+ A N  G  E    S      
Sbjct: 57  EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFK 97

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-08
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
            P  P   Q+ P S +       ++++ PE  GG P+L Y  E R  G   W        
Sbjct: 2   TPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 56

Query: 743 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
           E      + + GL+P   Y  R+ A N  G  E    S      
Sbjct: 57  EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFK 97

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 6e-08
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P        +  +        T+ W  PE      +L Y + +       +  +     +
Sbjct: 1   PSTVPIMHQVSATM----RSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNSSMAR-SQ 54

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
                + GL PG  Y  ++ A  V G+ +    S  +   
Sbjct: 55  TNTARIDGLRPGMVYVVQVRARTVAGYGKF---SGKMCFQ 91

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 6e-08
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P        +  +        T+ W  PE      +L Y + +       +  +     +
Sbjct: 1   PSTVPIMHQVSATM----RSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNSSMAR-SQ 54

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
                + GL PG  Y  ++ A  V G+ +    S  +   
Sbjct: 55  TNTARIDGLRPGMVYVVQVRARTVAGYGKF---SGKMCFQ 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
           +P   P+   A    T+L  + V  T           V W        S   +       
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA---GM 58

Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
              L++    L D G   C    R   ++ 
Sbjct: 59  GRRLLLRSVQLHDSGNYSCYRAGRPAGTVH 88

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 3/95 (3%)

Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
           AP      +     L    G+ + L                  +P             R 
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61

Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
           L   +   +  D G Y  +        V   LV V
Sbjct: 62  L--LLRSVQLHDSGNYSCYRAGRPAGTV-HLLVDV 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 461 DTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
              +  +E       +        ++WYKD  +   S  Q          L    A + D
Sbjct: 11  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVED 70

Query: 520 EGEIKCTATNRAGHSITKARLR-LEAPPTI 548
            G   C   N +     K   + +E  P +
Sbjct: 71  SGHYYCVVRNSSYCLRIKISAKFVENEPNL 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 12/85 (14%), Positives = 16/85 (18%), Gaps = 3/85 (3%)

Query: 563 GEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
            EI      +       T  W  +                    L    A+  D G Y  
Sbjct: 17  NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 76

Query: 622 HGVNSLGEDVASFLVTVTDRPLPPG 646
              NS             +    P 
Sbjct: 77  VVRNSSYCLRIKISAKFVEN--EPN 99

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRI-----VTDN 505
              +I+   + + L  +  E    V+     P V+W K           R        + 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
               L        D G  +C+A  ++    + +
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHS 95

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
           P+    + + +    + V    QVEG    +  W     E   +   +      +   + 
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQS-ATVMKSGGLPSLGLTLA 61

Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLR 541
           +  + ++   + C A N  G +    ++ 
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVN 90

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
            PT+++          ++G+ + L+  + G     A W+      ++            L
Sbjct: 2   VPTLKVQVP---NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL 58

Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
            L  +     +R        N +G    S  V V+
Sbjct: 59  TL-ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P   +       +     + +W PP            V          ++      + +
Sbjct: 2   APTDLKFT----QVTPTSLSAQWTPPNVQLTGYR----VRVTPKEKTGPMKEINLAPDSS 53

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
            ++VSGL    +Y+  + A      S P
Sbjct: 54  SVVVSGLMVATKYEVSVYALKDTLTSRP 81

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P   +       +     + +W PP            V          ++      + +
Sbjct: 2   APTDLKFT----QVTPTSLSAQWTPPNVQLTGYR----VRVTPKEKTGPMKEINLAPDSS 53

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
            ++VSGL    +Y+  + A      S P
Sbjct: 54  SVVVSGLMVATKYEVSVYALKDTLTSRP 81

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 14/104 (13%)

Query: 453 PSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND----- 506
           P  +   ++T       +++    V G  +    W  +G  I                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 507 -------ISTLIIHQAALMDEG-EIKCTATNRAGHSITKARLRL 542
                  I+ L I +           C A N  G      +L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY---------- 595
           P I  P    + +  ++G  I+L  ++ G     A W  NG  +                
Sbjct: 2   PVIVSPA--NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59

Query: 596 --EITHTDRYLNLRISDARRADRG-EYQAHGVNSLGEDVASFLVTV 638
                 +     L IS+         +     N+ G D A   +  
Sbjct: 60  PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 452 APSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDIST 509
           + +F + L       +  K+  TV++      +V W K+G EI  S  + I        T
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
           L I Q +L D+   +C              L ++
Sbjct: 64  LTISQCSLADDAAYQCVVGG----EKCSTELFVK 93

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 8/103 (7%)

Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWY-KDGFEIFSSRRQRIVTDND---- 506
            P  I +     AL  EK +    +   P P    +      + S    R   +      
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 507 --ISTLIIHQAAL-MDEGEIKCTATNRAGHSITKARLRLEAPP 546
             ISTL I        +    CTA N  G      RL+ +   
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 12/114 (10%)

Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARW-------LHNGEPLTSG 592
           L +  PP I   +          GE  ++K  +   PPP           L +G      
Sbjct: 2   LTVNGPPIISSTQTQH----ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 57

Query: 593 GRYEITHTDRYLNLRISDARRA-DRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
                T       L IS+  RA  +  Y     NS G D     +      +  
Sbjct: 58  VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 111

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
              P + ++   +         I W  P  +         + +     P          +
Sbjct: 2   LDAPSQIEVKDVTD----TTALITWFKPLAEIDGIE----LTYGIKDVPGDRTTIDLTED 53

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEP 434
           + +  +  L+P   Y+  + +      S P
Sbjct: 54  ENQYSIGNLKPDTEYEVSLISRRGDMSSNP 83

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
              P + ++   +         I W  P  +         + +     P          +
Sbjct: 2   LDAPSQIEVKDVTD----TTALITWFKPLAEIDGIE----LTYGIKDVPGDRTTIDLTED 53

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEP 773
           + +  +  L+P   Y+  + +      S P
Sbjct: 54  ENQYSIGNLKPDTEYEVSLISRRGDMSSNP 83

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  PG+      S      V  + W  P    G  +  Y V +               V 
Sbjct: 3   PSEPGRLAFNVVSS----TVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVL 57

Query: 405 DT-----ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
                   L++  L     Y++ + A N  G+         + +  Q
Sbjct: 58  VDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP--EREAIINLATQ 102

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  PG+      S      V  + W  P    G  +  Y V +               V 
Sbjct: 3   PSEPGRLAFNVVSS----TVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVL 57

Query: 744 DT-----ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 785
                   L++  L     Y++ + A N  G+         + +  Q
Sbjct: 58  VDNPKNRMLLIENLRESQPYRYTVKARNGAGWGP--EREAIINLATQ 102

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P    +   S        ++ W         P+  Y +    +         P   + T
Sbjct: 3   SPRDLMVTASSE----TSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVP--RDRT 52

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
              ++ LEPG  Y   ITAE     S  
Sbjct: 53  SYTLTDLEPGAEYIISITAERGRQQSLE 80

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P    +   S        ++ W         P+  Y +    +         P   + T
Sbjct: 3   SPRDLMVTASSE----TSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVP--RDRT 52

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
              ++ LEPG  Y   ITAE     S  
Sbjct: 53  SYTLTDLEPGAEYIISITAERGRQQSLE 80

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
           PP + ++   +        TI W          + G+ V+         ++ +    +  
Sbjct: 4   PPRRARVTDATE----TTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIK-PDVR 54

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
              ++GL+PG  Y+  +   N    S P
Sbjct: 55  SYTITGLQPGTDYKIYLYTLNDNARSSP 82

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
           PP + ++   +        TI W          + G+ V+         ++ +    +  
Sbjct: 4   PPRRARVTDATE----TTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIK-PDVR 54

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
              ++GL+PG  Y+  +   N    S P
Sbjct: 55  SYTITGLQPGTDYKIYLYTLNDNARSSP 82

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 10/88 (11%)

Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
            P   +    +P        + W  P       +L +     +      +         T
Sbjct: 4   APRDLEAKEVTP----RTALLTWTEPPVRPAGYLLSFHTPGGQ---TQEILLPG---GIT 53

Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEP 434
              + GL P   Y  R+ A        P
Sbjct: 54  SHQLLGLFPSTSYNARLQAMWGQSLLPP 81

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 10/88 (11%)

Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
            P   +    +P        + W  P       +L +     +      +         T
Sbjct: 4   APRDLEAKEVTP----RTALLTWTEPPVRPAGYLLSFHTPGGQ---TQEILLPG---GIT 53

Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEP 773
              + GL P   Y  R+ A        P
Sbjct: 54  SHQLLGLFPSTSYNARLQAMWGQSLLPP 81

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
               P  P  L   P        + W PPE      V GY + +                
Sbjct: 17  ETRVPEVPSSLHVRPL--VTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIK--VDY 71

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
           +     +  L+P   Y   + A N VG   P
Sbjct: 72  KQRYYTIENLDPSSHYVITLKAFNNVGEGIP 102

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
               P  P  L   P        + W PPE      V GY + +                
Sbjct: 17  ETRVPEVPSSLHVRPL--VTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQTIK--VDY 71

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
           +     +  L+P   Y   + A N VG   P
Sbjct: 72  KQRYYTIENLDPSSHYVITLKAFNNVGEGIP 102

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
              PP     +     +      + W+PPE      + GY++E R+    + V       
Sbjct: 7   GLSPPRGLVAVRTPRGV-----LLHWDPPELVPK-RLDGYVLEGRQGSQGWEVLDPAVAG 60

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
            +TEL+V GL     Y+FR+ A      S+P   S    V+   S  + PS
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDP---SNTANVS--TSGLSGPS 106

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
              PP     +     +      + W+PPE      + GY++E R+    + V       
Sbjct: 7   GLSPPRGLVAVRTPRGV-----LLHWDPPELVPK-RLDGYVLEGRQGSQGWEVLDPAVAG 60

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
            +TEL+V GL     Y+FR+ A      S+P   S    V+   S  + PS
Sbjct: 61  TETELLVPGLIKDVLYEFRLVAFAGSFVSDP---SNTANVS--TSGLSGPS 106

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
           P F     D     +   + + +         + W++   +I        V         
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------- 52

Query: 512 IHQAALMDEGEIKCTATNRAGHSITK 537
           ++   +       C A N  G + ++
Sbjct: 53  LNVTGVTQSTMFSCEAHNLKGLASSR 78

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 17/113 (15%), Positives = 28/113 (24%), Gaps = 5/113 (4%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHR-RTGSPYWVRASPH 401
           P GPP  PQ +     +      + W PP     G      +  +               
Sbjct: 7   PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP 66

Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
             + T + +  L         +   +  G S     S    V  +      P 
Sbjct: 67  TADSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTPH 116

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 17/113 (15%), Positives = 28/113 (24%), Gaps = 5/113 (4%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHR-RTGSPYWVRASPH 740
           P GPP  PQ +     +      + W PP     G      +  +               
Sbjct: 7   PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP 66

Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
             + T + +  L         +   +  G S     S    V  +      P 
Sbjct: 67  TADSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTPH 116

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 354 LPDSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
           + D P+      +   V  + W PP           L+++   G              ++
Sbjct: 3   VIDGPTQILVRDVSDTVAFVEWTPPRAKVD----FILLKYGLVGGEGGKTTFRLQPPLSQ 58

Query: 408 LMVSGLEPGWRYQFRITAENVVGFSEP 434
             V  L PG RY+  I+A      S+ 
Sbjct: 59  YSVQALRPGSRYEVSISAVRGTNESDA 85

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 693 LPDSPS------LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 746
           + D P+      +   V  + W PP           L+++   G              ++
Sbjct: 3   VIDGPTQILVRDVSDTVAFVEWTPPRAKVD----FILLKYGLVGGEGGKTTFRLQPPLSQ 58

Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEP 773
             V  L PG RY+  I+A      S+ 
Sbjct: 59  YSVQALRPGSRYEVSISAVRGTNESDA 85

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 8/99 (8%)

Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF--------EIFSSRRQRIVTD 504
            S   A  D    E+E ++ T    G  +P+V W                 +        
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
              S +        D GE  C  +   G +  +  + L 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN--------LRISDARRA 614
            E IKL  + +G   P   W       T+   Y    T  Y +        +  S   R 
Sbjct: 16  NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 615 DRGEYQAHGVNSLGEDVASFLVTVT 639
           D GEY        G++     + +T
Sbjct: 76  DNGEYTCMVSEEGGQNYGEVSIHLT 100

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 452 APSFIRALH--DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
            P         + T  E+ +     Q  G P P++   KDG                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 50

Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
                     EG   C A +  G    +  + + +P
Sbjct: 51  --SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P    L      L      + W     +     L +LV++R      W      +  
Sbjct: 3   PWAPENLTLH----KLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTE--QSVDY 53

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
             +  +  ++   RY FR+ +            SE
Sbjct: 54  RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 88

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P    L      L      + W     +     L +LV++R      W      +  
Sbjct: 3   PWAPENLTLH----KLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTE--QSVDY 53

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
             +  +  ++   RY FR+ +            SE
Sbjct: 54  RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 88

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
            E    PK+ WYKD   +           +    LI+   A    G   C A+       
Sbjct: 29  NENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQ 85

Query: 536 TKARLRLE 543
                 +E
Sbjct: 86  YPITRVIE 93

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
                     +     +      +RW P      S ++GY +     G    +       
Sbjct: 5   EVPQLTDLSFV----DITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 57

Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
                 V+GLEPG  Y   +      G S P
Sbjct: 58  SVGYYTVTGLEPGIDYDISVITLINGGESAP 88

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
                     +     +      +RW P      S ++GY +     G    +       
Sbjct: 5   EVPQLTDLSFV----DITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 57

Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
                 V+GLEPG  Y   +      G S P
Sbjct: 58  SVGYYTVTGLEPGIDYDISVITLINGGESAP 88

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 23/114 (20%)

Query: 463 TALEDEKVEFTVQVEGIPTPK--------------VSWYKDGFEIFSSRRQR-------- 500
            AL  ++ E   ++                     V  Y++G +  + +           
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 72

Query: 501 -IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQ 553
                     L I      DEG   C   + +        L++E P     P +
Sbjct: 73  KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGR 126

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-- 508
            + +   +  +    E+  V+ +    G  +P+V W  D  +                  
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 509 ------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
                  +        D G   C  +   G+S  + +++L
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 26  LAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQA 85
           L   RD++    +       Q   RG+L MR E +  +  + S   IQ   R        
Sbjct: 726 LEEMRDDK----LAEIITATQARCRGFL-MRVEYRAMVERRESIFCIQYNVR----SFMN 776

Query: 86  RQQYLALK 93
            + +  +K
Sbjct: 777 VKHWPWMK 784

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIA 231
           +   L  LE     +L       Q R R  +  R +    V  R +   IQ   R+++  
Sbjct: 719 KAGLLGLLEEMRDDKLAEIITATQARCRGFLM-RVEYRAMVERRESIFCIQYNVRSFMNV 777

Query: 232 KN 233
           K+
Sbjct: 778 KH 779

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 1   MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
           +++ R D L         Q   R  L  R + R     R     IQ   R ++      +
Sbjct: 726 LEEMRDDKLAEII--TATQARCRGFLM-RVEYRAMVERRESIFCIQYNVRSFM----NVK 778

Query: 61  EYLAMK 66
            +  MK
Sbjct: 779 HWPWMK 784

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 4/40 (10%), Positives = 19/40 (47%)

Query: 269 QERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKK 308
           +E ++    +     Q+  + + +R ++  ++E+++    
Sbjct: 727 EEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFC 766

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 11/82 (13%)

Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT----------DNDISTL 510
               +    V F V    +P  +V W K   ++                    D    +L
Sbjct: 4   QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 511 IIHQAALMDEGEIKCTATNRAG 532
            I+     DE E +  + N   
Sbjct: 63  TIYNLTSSDEDEYEMESPNITD 84

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 453 PSFIRALHDT-TALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
             F     D     E   V FT       P     W  + F  F     R         L
Sbjct: 4   QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63

Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
            I +    D G   C AT+     ITK+     +  ++
Sbjct: 64  YIAKTEASDLGNYSCFATSHID-FITKSVFSKFSQLSL 100

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 17/114 (14%)

Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
           P  P + + L  +         + W+PP+    +  +        T        +     
Sbjct: 1   PDGPTQLRALNLTE----GFAVLHWKPPQNPVDTYDIQV------TAPGAPPLQAETPGS 50

Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
             +  +  L     Y   +        + P             +   AP  + A
Sbjct: 51  AVDYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEA 97

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 17/114 (14%)

Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
           P  P + + L  +         + W+PP+    +  +        T        +     
Sbjct: 1   PDGPTQLRALNLTE----GFAVLHWKPPQNPVDTYDIQV------TAPGAPPLQAETPGS 50

Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
             +  +  L     Y   +        + P             +   AP  + A
Sbjct: 51  AVDYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEA 97

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 461 DTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
               +E + +             KV +YK          + +    +   + I  A + D
Sbjct: 9   AEVVMEGQPLFLRCHGWRNWDVYKVIYYK--------DGEALKYWYENHNISITNATVED 60

Query: 520 EGEIKCTATNRAGHSITK-ARLRLEAPP 546
            G   CT         ++   + +   P
Sbjct: 61  SGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 461 DTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
                E++ +             KV++ ++G +                   I +A L D
Sbjct: 11  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH--------IPKATLKD 62

Query: 520 EGEIKCTATNRAGHSITKARLRL 542
            G   C     +  +++   + +
Sbjct: 63  SGSYFCRGLVGSK-NVSSETVNI 84

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 25  KLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKS---SAVKIQEWYRNLQC 81
            L   RDER    +     + Q + RGYL     R+ Y  ++        IQ   R    
Sbjct: 721 NLEEMRDER----LSKIISMFQAHIRGYL----IRKAYKKLQDQRIGLSVIQRNIRKWLV 772

Query: 82  MR 83
           +R
Sbjct: 773 LR 774

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALR---TATITIQTRFRAY 228
           +   L  LE      L       Q   R        R+ Y  L+        IQ   R +
Sbjct: 715 KAGVLGNLEEMRDERLSKIISMFQAHIR----GYLIRKAYKKLQDQRIGLSVIQRNIRKW 770

Query: 229 LIAKN 233
           L+ +N
Sbjct: 771 LVLRN 775

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 1   MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRK 57
           +++ R + L+      + Q   R  L  R+  ++    R    VIQ+  R +L++R 
Sbjct: 722 LEEMRDERLSKII--SMFQAHIRGYLI-RKAYKKLQDQRIGLSVIQRNIRKWLVLRN 775

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 461 DTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
                E E +          P  KV+++++G     SR     +    +           
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQAN--------HSH 60

Query: 520 EGEIKCTATNRAGHSITK-ARLRLEAP 545
            G+  CT         +K   + ++AP
Sbjct: 61  SGDYHCTGNIGYTLYSSKPVTITVQAP 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1101
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.56
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.46
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.38
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.37
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.36
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.36
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.36
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.36
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.35
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.35
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.33
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.33
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.31
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.3
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.28
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.28
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.27
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.24
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.24
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.23
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.23
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.22
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.22
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.22
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.2
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.2
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.19
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.18
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.18
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.18
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.17
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.16
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.16
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.16
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.15
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.14
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.14
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.14
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.12
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.12
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.12
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.12
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.11
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.11
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.11
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.1
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.09
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.09
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.08
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.08
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.08
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.08
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.08
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.07
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.07
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.07
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.06
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.06
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.06
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.06
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.05
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.05
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.05
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.04
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.04
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.03
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.03
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.03
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.03
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.02
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.02
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.02
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.01
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.0
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.0
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.0
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.0
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.99
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.99
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.98
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.97
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.97
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.97
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.97
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.96
d2avga1	110	Cardiac myosin binding protein C, different domain	98.96
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.96
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.96
d2crma1	107	Fibronectin type-III domain containing protein 3a,	98.95
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.95
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.95
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.95
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.95
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.95
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.95
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.95
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.94
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	98.94
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.93
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.93
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.93
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.93
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	98.92
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.91
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.91
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.91
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.91
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.9
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.9
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.9
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.9
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.89
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.89
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.88
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.88
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	98.88
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.88
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.88
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	98.87
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.87
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.86
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.86
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.86
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.85
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.84
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.83
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	98.83
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.81
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.8
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.8
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.78
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.78
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.78
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.77
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	98.77
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.76
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.75
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.74
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.74
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.74
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	98.73
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.73
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.73
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.73
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	98.73
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.73
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	98.72
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.72
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.72
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.72
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.71
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.7
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	98.7
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.69
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	98.68
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.68
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.68
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.67
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.67
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.66
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.66
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.65
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.65
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.65
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.64
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.64
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.64
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	98.62
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.62
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.61
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.61
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.61
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.6
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.59
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.59
d2avga1	110	Cardiac myosin binding protein C, different domain	98.59
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.59
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.58
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.58
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.57
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.57
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.56
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.55
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.54
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.54
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.54
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.54
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.53
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.52
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.52
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.51
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.5
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.5
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.49
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.48
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.48
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.48
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.48
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.47
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.47
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.47
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.46
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.46
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.46
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.46
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.45
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.44
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.43
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.43
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.42
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.42
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.42
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.41
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.4
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.39
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.38
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.38
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.38
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.38
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.37
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.37
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.36
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.35
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.35
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.35
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.34
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.34
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.34
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.33
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.33
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.33
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.33
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.3
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.3
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.29
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.29
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.27
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.25
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.21
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.17
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.15
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.13
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.07
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.07
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.05
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.02
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.01
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.98
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.93
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	97.86
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.78
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.74
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.66
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	97.63
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.62
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.6
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.56
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.55
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.54
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.52
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.52
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.51
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.51
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.5
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.46
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.45
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.44
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.4
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.4
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.38
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.38
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.35
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.34
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.32
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.27
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.26
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.24
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.22
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.2
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.18
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.17
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.16
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.16
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.16
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.13
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.12
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.12
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.12
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.1
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.09
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.09
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.07
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.06
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.06
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.05
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.03
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.02
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.01
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.01
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.98
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.98
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.97
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.97
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.96
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.96
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.95
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.91
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	96.86
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.85
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.8
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.78
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.78
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.77
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.75
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.74
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.74
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.73
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.68
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	96.67
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.62
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.62
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.61
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.58
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.58
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.56
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.54
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.52
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.52
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.5
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.49
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.47
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.46
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.45
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.43
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.42
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.4
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.39
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.37
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.32
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.31
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.3
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.29
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.28
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.23
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.22
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.17
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.16
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.12
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.11
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.11
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.11
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.09
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.09
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.02
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.02
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.01
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.01
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.0
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.94
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.93
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.93
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.91
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.9
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.89
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.86
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.82
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.82
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.8
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.8
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.78
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	95.74
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	95.72
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.71
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	95.71
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.68
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.68
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.66
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.61
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	95.58
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	95.56
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.56
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	95.54
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.53
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	95.46
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	95.46
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.45
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.43
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.43
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	95.43
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.41
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.4
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.37
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	95.36
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.34
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.26
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.22
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	95.18
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	95.17
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.13
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	95.11
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.08
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	95.08
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.06
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	95.0
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	94.99
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	94.99
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	94.97
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	94.91
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.84
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	94.8
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	94.79
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.74
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	94.67
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	94.66
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.66
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.65
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	94.64
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	94.55
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	94.51
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.46
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.45
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	94.45
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.43
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	94.41
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	94.4
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	94.39
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	94.35
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.33
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.32
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	94.21
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	94.2
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	94.17
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	94.16
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.14
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	94.14
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	94.13
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	94.1
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.1
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	94.1
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	94.09
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	94.05
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.03
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.0
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	93.98
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.9
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	93.9
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	93.87
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.85
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.79
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	93.76
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.72
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	93.66
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	93.66
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.63
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	93.62
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	93.58
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	93.55
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	93.54

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.1e-14  Score=127.56  Aligned_cols=96  Identities=34%  Similarity=0.521  Sum_probs=76.9

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      ||++|.++.+..++.++++|+|.+|.                                              .+++.+|+
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~----------------------------------------------~~~~~~i~   34 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPD----------------------------------------------RIGAGGID   34 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCS----------------------------------------------CCCSSCCC
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCC----------------------------------------------cCCCCCce
Confidence            46677777777666666666666554                                              44556789


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      +|.|+|+..++..|..+.......++++|++|.|++.|.|+|.|.|..|.|++|..+..+++
T Consensus        35 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n~~G~s~~s~~~~~vtv   96 (98)
T d1x5ya1          35 GYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI   96 (98)
T ss_dssp             EEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEETTEECCCCCCSSCBCC
T ss_pred             EEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEECCCcCCCCcCCCCCEEe
Confidence            99999999988899887766567889999999999999999999999999999877765544

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.9e-14  Score=121.67  Aligned_cols=93  Identities=33%  Similarity=0.476  Sum_probs=76.7

Q ss_pred             CCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEE
Q psy8139         684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      ++|+.+|...   ...+.++|+|+|++|..++|.+|++|.|+++..+...|..+..  ...++++|.+|.|++.|.|+|+
T Consensus         2 P~p~~pp~~~---~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~   76 (97)
T d2crza1           2 PGPCLPPRLQ---GRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLR   76 (97)
T ss_dssp             CCCCCCCEEC---SCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECCE
T ss_pred             cCcCCCCEEe---eeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec--CCceEEEEcCCCCCEEEEEEEE
Confidence            3455554422   2356789999999999888889999999999998888887765  6778999999999999999999


Q ss_pred             EEcCCccCCCCCCCCcEE
Q psy8139         764 AENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       764 A~n~~G~g~~S~~s~~~t  781 (1101)
                      |.|..|.|++|+.+.+.|
T Consensus        77 A~N~~G~s~~S~~~~~~T   94 (97)
T d2crza1          77 AANKMGFGPFSEKCDITT   94 (97)
T ss_dssp             EECSSCBCCCCCCEEEEC
T ss_pred             EecCCeEcCCcCCCeEEe
Confidence            999999999887665544

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.5e-13  Score=121.43  Aligned_cols=98  Identities=29%  Similarity=0.540  Sum_probs=77.9

Q ss_pred             CCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEE
Q psy8139         683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      +|++|+.|...  ...++.+++.|+|.+| .++|++|++|.|+|+..++..+..........++++|.+|.|++.|.|+|
T Consensus        10 ~P~~P~~p~~~--~~~~~~~sv~l~W~~P-~~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   86 (108)
T d1wf5a1          10 LPHAPEHPVAT--LSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRL   86 (108)
T ss_dssp             CCCCCSSCEEE--ECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCCCCCCCEEE--EEeccCCEEEEEEECC-CCCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEE
Confidence            45555555332  2357789999999998 46778899999999988775455444444677899999999999999999


Q ss_pred             EEEcCCccCCCCCCCCcEEec
Q psy8139         763 TAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       763 ~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      .|.|..|.|++|+.+..++++
T Consensus        87 ~A~N~~G~s~~S~~~~~~t~P  107 (108)
T d1wf5a1          87 CAVNDVGKGQFSKDTERVSLP  107 (108)
T ss_dssp             EEEESSCEEEECCCCSCEECC
T ss_pred             EEEcCCcCCCCcCCcCCEECC
Confidence            999999999999888877653

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-13  Score=122.97  Aligned_cols=100  Identities=34%  Similarity=0.563  Sum_probs=75.4

Q ss_pred             EEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCC
Q psy8139         635 LVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD  714 (1101)
Q Consensus       635 ~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~  714 (1101)
                      .+.+.+.|++|.++.+..++.++|+|+|++|.                                               +
T Consensus         9 ~~~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~-----------------------------------------------~   41 (117)
T d1uema_           9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-----------------------------------------------P   41 (117)
T ss_dssp             CCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-----------------------------------------------C
T ss_pred             cceeCccCcCCCCCEEEEccCCEEEEEEECCC-----------------------------------------------c
Confidence            34556788889999888888888888887543                                               2


Q ss_pred             CCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         715 GGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       715 ~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      ++.+|.+|.|+|+..+. ..|..+... ...+.++|.+|.|++.|.|+|+|+|..|.|++|+.+..+++
T Consensus        42 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~v~t  109 (117)
T d1uema_          42 GTLPASAYIIEAFSQSVSNSWQTVANH-VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT  109 (117)
T ss_dssp             SSSCCCEEEEEEEETTTEEEEEEEEEE-ECSSEEEECSCCTTCEEEEEEEEEETTEEEEECCCCCCEEC
T ss_pred             CCCCeEEEEEEEeccCCceeeEEeccc-cccccceECCCCCCCEEEEEEEEEeCCcCCCCcCCCcCEEe
Confidence            33457777777665544 345554432 46689999999999999999999999999999988765543

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.9e-12  Score=115.44  Aligned_cols=82  Identities=30%  Similarity=0.557  Sum_probs=59.8

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecc-cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASP-HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      +.+++.|+|.|| .++|.+|++|.|+|+..+. ..|..... .....++++|.+|.|++.|.|+|.|.|..|.|++|.++
T Consensus        23 ~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~pS  101 (108)
T d1x4za1          23 SETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPS  101 (108)
T ss_dssp             CSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCC
T ss_pred             cCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEEEECCCcCCCCCCCC
Confidence            334444444333 3455678888888887554 35554432 33567899999999999999999999999999999888


Q ss_pred             CcEEe
Q psy8139         778 EPLTV  782 (1101)
Q Consensus       778 ~~~t~  782 (1101)
                      ..+++
T Consensus       102 ~p~~~  106 (108)
T d1x4za1         102 RPYVV  106 (108)
T ss_dssp             CCEEC
T ss_pred             CCEEe
Confidence            76654

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.36  E-value=1.1e-12  Score=115.39  Aligned_cols=68  Identities=26%  Similarity=0.359  Sum_probs=53.1

Q ss_pred             CCCCcceEEEEEEeCCCCCce-eecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         715 GGSPVLGYLVEHRRTGSPYWV-RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       715 ~~~~i~~Y~V~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      +|++|.+|.|+|+..+...|. .........+++++.+|.|++.|.|+|.|.|..|.|++|+++..+++
T Consensus        31 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~n~~G~g~~S~~s~~vtT   99 (100)
T d1cfba1          31 NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT   99 (100)
T ss_dssp             TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEEEETTEECCCCCCCCCEEE
T ss_pred             cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEEEeCCcCCCCcCCCcCEEe
Confidence            445688888888876654443 33333356678899999999999999999999999999988877664

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.6e-13  Score=118.45  Aligned_cols=72  Identities=36%  Similarity=0.635  Sum_probs=56.2

Q ss_pred             CCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc-CCCCCCCCcEEe
Q psy8139         711 PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTV  782 (1101)
Q Consensus       711 P~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~s~~~t~  782 (1101)
                      |..++|.+|.+|.+++...+...|..........+.+++.+|.|++.|.|+|.|+|..|. |++|..+..+++
T Consensus        26 P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~~s~~S~~s~~vt~   98 (104)
T d1bpva_          26 PEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC   98 (104)
T ss_dssp             CSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEEEEEECS
T ss_pred             ccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEECCCCCCCCcCCCCCEEe
Confidence            334445567788888888777777776655567889999999999999999999999996 777766655544

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=7.1e-13  Score=115.90  Aligned_cols=95  Identities=35%  Similarity=0.595  Sum_probs=79.7

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  423 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c  423 (1101)
                      ||++|..+.+   . .++.++++|+|.+|..+|+.+|++|.|+++..++..|..........++++|.+|.+++.|.|+|
T Consensus         1 PP~~P~~~~v---~-~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV   76 (98)
T d1x5ya1           1 PTSAPQHLTV---E-DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRV   76 (98)
T ss_dssp             CCCCCEEEEE---E-EECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEE
T ss_pred             CCCCCcCcEE---E-EccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEE
Confidence            3455555444   3 77899999999999888888999999999999888999877666677899999999999999999


Q ss_pred             EEEecCCCCCCCCCCcceE
Q psy8139         424 TAENVVGFSEPGPLSEPLT  442 (1101)
Q Consensus       424 ~A~n~~G~~~~s~~s~~vt  442 (1101)
                      .|.|..|.|.++..+.+++
T Consensus        77 ~A~n~~G~s~~s~~~~~vt   95 (98)
T d1x5ya1          77 VGVNIAGRSEPATLLQPVT   95 (98)
T ss_dssp             EEEETTEECCCCCCSSCBC
T ss_pred             EEECCCcCCCCcCCCCCEE
Confidence            9999999998876655554

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.4e-13  Score=119.85  Aligned_cols=96  Identities=23%  Similarity=0.337  Sum_probs=74.8

Q ss_pred             cCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCc-eeecccccCccEEEEcCCCCCceEEE
Q psy8139         682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-VRASPHMVEDTELMVSGLEPGWRYQF  760 (1101)
Q Consensus       682 ~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~  760 (1101)
                      +.++.|++|........+++++++|+|++|..++|.++.+|.|+++..+...| .....  ...+.+.+.+|.|++.|.|
T Consensus         6 T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~   83 (107)
T d2crma1           6 TCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLNPGCFYRL   83 (107)
T ss_dssp             SCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCSEEEECSCCTTSCEEE
T ss_pred             CCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeec--CCccEEEEeccCCCCEEEE
Confidence            44555665544322235678999999999988888899999999987766544 43333  6778999999999999999


Q ss_pred             EEEEEcCCccCCCCCCCCc
Q psy8139         761 RITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       761 ~V~A~n~~G~g~~S~~s~~  779 (1101)
                      +|.|.|..|.|++|+...+
T Consensus        84 rV~A~n~~G~s~~S~~v~v  102 (107)
T d2crma1          84 RVYCISDGGQSAVSESLLV  102 (107)
T ss_dssp             EEEEEETTEECCCCCCCCC
T ss_pred             EEEEECCCcCcCCCCcEEE
Confidence            9999999999988865543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.9e-12  Score=113.92  Aligned_cols=95  Identities=22%  Similarity=0.258  Sum_probs=87.6

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.|...|.+..+..|+++.|.|.+.|.|.+.+.|++++..+....++.+....+.+.|.|.++...|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            56677788999999999999999999999999999999999888888888888888999999999999999999999999


Q ss_pred             ceEEEEEEeeccCCc
Q psy8139         533 HSITKARLRLEAPPT  547 (1101)
Q Consensus       533 ~~~~s~~l~V~~~p~  547 (1101)
                      ....++.|.|...|.
T Consensus        81 ~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          81 SRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEECCEEEEEECSCS
T ss_pred             EEEEEEEEEEEecCC
Confidence            999999999988764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=1e-12  Score=114.75  Aligned_cols=94  Identities=24%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .|.|+..|.+..+.+|+++.|.|.+.|.|.|.|+|++++..+..+.++.+...++...|.|.++...|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            37888889999999999999999999999999999999999988877777777788899999999999999999999999


Q ss_pred             CceEEEEEEeeccC
Q psy8139         532 GHSITKARLRLEAP  545 (1101)
Q Consensus       532 g~~~~s~~l~V~~~  545 (1101)
                      |....++.|.|...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            99888888888653

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.35  E-value=3.3e-12  Score=112.65  Aligned_cols=95  Identities=29%  Similarity=0.504  Sum_probs=85.5

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..+|.|...|.++.+..|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+... .+..+|.|.++...|.|.|+|.|.
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            4578899999999999999999999999999999999999999988888777654 456789999999999999999999


Q ss_pred             eCCCceEEEEEEeecc
Q psy8139         529 NRAGHSITKARLRLEA  544 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~~  544 (1101)
                      |..|....++.|.|..
T Consensus        86 N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          86 NSLGEATCTAELLVET  101 (102)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCcEEEEEEEEEEEE
Confidence            9999999888888853

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-12  Score=113.48  Aligned_cols=92  Identities=21%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|++|.++.+...+.++|.|+|++|...                                               +++|.
T Consensus        10 vP~~P~~l~v~~~s~~si~l~W~~P~~~-----------------------------------------------~g~i~   42 (103)
T d1x5ga1          10 LPGPAPNLRAYAASPTSITVTWETPVSG-----------------------------------------------NGEIQ   42 (103)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCSCC-----------------------------------------------SSCCS
T ss_pred             CcccCCCcEEEEccCCEEEEEEECCcCC-----------------------------------------------CccEE
Confidence            4677778887777777777777765432                                               34688


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      +|.|.|+..+...|..+.   .+.++++|.+|.|++.|.|+|.|.|..|.|++|+...+.|.
T Consensus        43 ~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~v~T~  101 (103)
T d1x5ga1          43 NYKLYYMEKGTDKEQDVD---VSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL  101 (103)
T ss_dssp             EEEEEEEETTCCCCCCEE---ECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECC
T ss_pred             EEEEEEEeCCCceeEEEe---ccccEEecCCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEcC
Confidence            999999888777665543   46689999999999999999999999999998876665543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=3e-12  Score=109.34  Aligned_cols=87  Identities=26%  Similarity=0.510  Sum_probs=78.8

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      |.|+..|.++.+..|+++.|.|.+.|.|.|.++|+++|..+....++.+.  ++  .|.|.++...|+|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee--ee--eEEEEeecccCCEEEEEEEEeCCC
Confidence            67888999999999999999999999999999999999999887776653  22  799999999999999999999999


Q ss_pred             ceEEEEEEeec
Q psy8139         533 HSITKARLRLE  543 (1101)
Q Consensus       533 ~~~~s~~l~V~  543 (1101)
                      ....++.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            98888888885

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.33  E-value=5.6e-12  Score=110.20  Aligned_cols=94  Identities=29%  Similarity=0.476  Sum_probs=83.9

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.|...+.+..+..|+++.|.|.+.|.|.|.++|++++..+..+.+.... ..++...|.|.++...|+|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            4688888999999999999999999999999999999999999877665544 456677999999999999999999999


Q ss_pred             CCCceEEEEEEeecc
Q psy8139         530 RAGHSITKARLRLEA  544 (1101)
Q Consensus       530 ~~g~~~~s~~l~V~~  544 (1101)
                      ..|....++.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999889888864

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=115.44  Aligned_cols=83  Identities=28%  Similarity=0.407  Sum_probs=69.9

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc---cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP---HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      .+.++++|.|++|..++|.+|++|.|+|+..++..|.....   .....+.++|.+|.|++.|.|+|.|.|..|.|++|+
T Consensus        13 ~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~g~~S~   92 (101)
T d2haza1          13 PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA   92 (101)
T ss_dssp             ECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEETTEECCCCC
T ss_pred             eeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEEeCCcCcCCCC
Confidence            46688999999999899999999999999988877765432   123457899999999999999999999999999987


Q ss_pred             CCCcEE
Q psy8139         776 LSEPLT  781 (1101)
Q Consensus       776 ~s~~~t  781 (1101)
                      .+.+.|
T Consensus        93 ~~~~~T   98 (101)
T d2haza1          93 ASEFKT   98 (101)
T ss_dssp             CEEEEC
T ss_pred             ceeEEe
Confidence            765554

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.6e-13  Score=120.09  Aligned_cols=110  Identities=17%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             CCCCCCCCcccCCCCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139         683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  761 (1101)
Q Consensus       683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~  761 (1101)
                      ..+.|+.|+........+++++.|+|++|. ...++.|.+|.|.|+..+...+.......+..++++|.+|.|++.|.|+
T Consensus         7 ~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   86 (119)
T d1x5ha1           7 LSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFR   86 (119)
T ss_dssp             CCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEE
T ss_pred             CCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEE
Confidence            344555444333344678899999999864 4456689999999998877665554444467789999999999999999


Q ss_pred             EEEEcCCccCCCCCCCCcEEecCCCCCCCCC
Q psy8139         762 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAP  792 (1101)
Q Consensus       762 V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p  792 (1101)
                      |.|+|..|.|++|....+.|......++.+|
T Consensus        87 V~A~n~~G~G~~S~~~~~~T~~~~~~~~~~P  117 (119)
T d1x5ha1          87 VAALTINGTGPATDWLSAETFESDLDETRVP  117 (119)
T ss_dssp             CEEEETTEEEEECCCEEEECCSSCCCCCCCC
T ss_pred             EEEEcCCcCCCCCCCEEEEeCCCCCCCCcCC
Confidence            9999999999988766655554333334444

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.31  E-value=2.3e-12  Score=111.43  Aligned_cols=92  Identities=14%  Similarity=0.213  Sum_probs=84.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      +|.|...+.++.+..|+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            57888888999999999999999999999999999999998888887888878888899999999999999999999999


Q ss_pred             CceEEEEEEeec
Q psy8139         532 GHSITKARLRLE  543 (1101)
Q Consensus       532 g~~~~s~~l~V~  543 (1101)
                      |.....+.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999888888773

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=7.2e-12  Score=108.92  Aligned_cols=84  Identities=15%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             cccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCc
Q psy8139         691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG  769 (1101)
Q Consensus       691 ~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G  769 (1101)
                      +.......++++++.|+|++|...++++|.+|.|.|+..+. ..|........+.++++|.+|.|++.|.|+|.|+|..|
T Consensus        10 P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   89 (95)
T d2ibga1          10 PELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAAS   89 (95)
T ss_dssp             CEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSC
T ss_pred             CcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEeCCc
Confidence            33344567889999999999887788889999999998754 34655444446778999999999999999999999999


Q ss_pred             cCCCC
Q psy8139         770 FSEPG  774 (1101)
Q Consensus       770 ~g~~S  774 (1101)
                      .|++|
T Consensus        90 ~s~~S   94 (95)
T d2ibga1          90 ASEFS   94 (95)
T ss_dssp             BCCCC
T ss_pred             cCCCC
Confidence            98876

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=108.58  Aligned_cols=91  Identities=25%  Similarity=0.402  Sum_probs=84.5

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ....+..|+++.|.|.+.|.|.+.+.|++++..+..+.++.+...++..+|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   87 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN   87 (101)
T ss_dssp             CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred             CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence            35678899999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             EEEecCCCCCC
Q psy8139         636 VTVTDRPLPPG  646 (1101)
Q Consensus       636 l~v~~~P~~P~  646 (1101)
                      |.|.+.|++|.
T Consensus        88 l~V~~~P~pP~   98 (101)
T d2cqva1          88 LTVVDKPDPPA   98 (101)
T ss_dssp             EEEECSCSCCC
T ss_pred             EEEEecCCCcC
Confidence            99999999884

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.2e-12  Score=110.84  Aligned_cols=70  Identities=26%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         711 PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       711 P~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      |..++|.++.+|.++++..+...|..... ....++++|.+|.|++.|.|+|.|.|..|.|++|+...+.|
T Consensus        24 p~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~~rV~A~n~~G~s~~S~~~~~~T   93 (96)
T d1x5xa1          24 PSGTPSDEGISYILEMEEETSGYGFKPKY-DGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT   93 (96)
T ss_dssp             CSSCCSSSSCEEEEEECCSSSSCCCEEEE-EESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEEC
T ss_pred             ecccCcceEeeeEEEeeeccceeeeEEee-cCCCCEEEECCCCCCCEEEEEEEEEcCCcEeCCCCCEEEEe
Confidence            33344455777777777666555544332 26778999999999999999999999999988887665544

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.2e-12  Score=108.75  Aligned_cols=73  Identities=26%  Similarity=0.339  Sum_probs=54.6

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +.+++.|+|++| .++|++|.+|.|+|+..++.. ..........++++|.+|.|++.|.|+|.|.|..|.|++|
T Consensus        13 ~~~sv~l~W~~p-~~~~~~I~~Y~i~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~s~ps   85 (93)
T d2vkwa2          13 DGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEW-KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA   85 (93)
T ss_dssp             TSSCEEEEEECC-CCTTSCCCEEEEEEEETTSCC-CCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             CCCEEEEEeeCC-CCCcCceEEEEEEeeecCcce-eeeeeccCCceEEEEeccccceEEEEEEEEEcCCCCcCCE
Confidence            334444444444 255667889999998877643 3333334678899999999999999999999999998876

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.3e-12  Score=108.37  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=55.5

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      +++++.|+|++|.. ++++|++|.|+|+..+...|....   ...++++|.+|.|++.|.|+|.|.|..|.|++|+...+
T Consensus        13 s~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~   88 (93)
T d1x4xa1          13 SATCAQVNWEVPLS-NGTDVTEYRLEWGGVEGSMQICYC---GPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVAC   88 (93)
T ss_dssp             ETTEEEEECCCCSC-SSSCCCEEEEEEESSTTSCCEEEE---ESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEE
T ss_pred             CCCeEEEEEEeccc-CCCeeEEEEEEEccCCCcceEeec---CCccEEEEcccceeeEEEEEEEEEECCcCcCCCCcEEE
Confidence            33444444444432 345688899988877765555432   57789999999999999999999999999888765443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-11  Score=110.34  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=72.4

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ..|++|.++.+..++.++|.|+|.+|.                                              .++++++
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~----------------------------------------------~~~~~~i   42 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPA----------------------------------------------SDPHGDN   42 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCS----------------------------------------------SCSSCCS
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCc----------------------------------------------cCCCCce
Confidence            356777777777777777777776553                                              3444568


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      .+|.|.|+..+...|..........++++|.+|.|++.|.|+|.|.|..|.|++|....+.
T Consensus        43 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~n~~G~g~~S~~i~v~  103 (107)
T d1x5fa1          43 LTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE  103 (107)
T ss_dssp             SEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEE
T ss_pred             EEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEEeCCCCcCCCCCEEEE
Confidence            8899999887776666665555778999999999999999999999999998876644433

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.24  E-value=1.5e-11  Score=109.11  Aligned_cols=83  Identities=18%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             CCCCCCceEEEEeeC-CCCCCCCCcceEEEEEEeCCC-CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         696 SPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       696 ~~~~~~~si~l~W~p-P~~~~~~~i~~Y~V~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ....+.+++.|+|++ +..+.++++.+|.|.|+..+. ..|..........++++|.+|.|++.|.|+|.|+|..|.|++
T Consensus        13 ~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~gp~   92 (105)
T d1cfba2          13 GQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNV   92 (105)
T ss_dssp             EECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSS
T ss_pred             EEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcCCCC
Confidence            446788999999998 455677899999999998764 456655544467789999999999999999999999999998


Q ss_pred             CCCCC
Q psy8139         774 GPLSE  778 (1101)
Q Consensus       774 S~~s~  778 (1101)
                      |....
T Consensus        93 S~~~v   97 (105)
T d1cfba2          93 AAEEV   97 (105)
T ss_dssp             CCCCE
T ss_pred             CCCcE
Confidence            86553

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7e-12  Score=114.36  Aligned_cols=81  Identities=17%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEE----eCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHR----RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~----~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ++.++|.|+|++|..+++.++.+|.|+|+    ......|..+..  ...++++|.+|.|++.|.|+|+|+|..|.|++|
T Consensus        27 vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S  104 (120)
T d1wfua_          27 VTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYS  104 (120)
T ss_dssp             EETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEESCCTTCEEEEEEEEECSSSCEEEC
T ss_pred             ecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeecc--ccccEEeCCCCCCCcEeeEEEEEEeCCcEeCCC
Confidence            44445555555554455555555555554    334445666554  567899999999999999999999999998887


Q ss_pred             CCCCcEE
Q psy8139         775 PLSEPLT  781 (1101)
Q Consensus       775 ~~s~~~t  781 (1101)
                      +...+.|
T Consensus       105 ~~~~~~T  111 (120)
T d1wfua_         105 PVVSVAT  111 (120)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEe
Confidence            6555443

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.6e-12  Score=108.92  Aligned_cols=83  Identities=22%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      ...++.+++.|+|.+|... +++|.+|.|.|+..+...+.... .....++++|.+|.|++.|.|+|+|.|..|.|++|+
T Consensus        12 ~~~~s~~si~v~W~~P~~~-~g~i~~Y~v~y~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~g~~S~   89 (98)
T d1x5la1          12 QERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYST-LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQ   89 (98)
T ss_dssp             CSCBCSSCEEEEECCCSCC-CSCCCEEEEEEEESSSCCSSCEE-EEESSSEEEECSCCTTCEEEECEEEEETTEECCCCC
T ss_pred             EEeccCCEEEEEEECCCCC-CCCEEEEEEEeecccccceeeEE-ecCCceEEEECCCCCCCEEEEEEEEEcCCCCcCCCC
Confidence            3456777777777777544 45789999999987765443322 226778999999999999999999999999988876


Q ss_pred             CCCcE
Q psy8139         776 LSEPL  780 (1101)
Q Consensus       776 ~s~~~  780 (1101)
                      ...+.
T Consensus        90 ~v~~~   94 (98)
T d1x5la1          90 AMEVE   94 (98)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            55443

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-11  Score=109.07  Aligned_cols=101  Identities=28%  Similarity=0.473  Sum_probs=80.8

Q ss_pred             eeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCC
Q psy8139         337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPG  416 (1101)
Q Consensus       337 ~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~  416 (1101)
                      ..+.+.+.|++|..|.+. . ..++.++|.|+|.+|. +|+++|++|.|+++..++..+..........++++|.+|.++
T Consensus         3 ~~l~v~~~P~~P~~p~~~-~-~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   79 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVAT-L-STVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA   79 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEE-E-CSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTT
T ss_pred             cccEEecCCCCCCCCEEE-E-EeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCC
Confidence            467788999999998753 2 2578899999999984 677799999999998766545544444456678999999999


Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcc
Q psy8139         417 WRYQFRITAENVVGFSEPGPLSEP  440 (1101)
Q Consensus       417 d~y~y~c~A~n~~G~~~~s~~s~~  440 (1101)
                      +.|.|+|.|.|..|.+.+|..+..
T Consensus        80 t~Y~frV~A~N~~G~s~~S~~~~~  103 (108)
T d1wf5a1          80 RSYQFRLCAVNDVGKGQFSKDTER  103 (108)
T ss_dssp             CEEEEEEEEEESSCEEEECCCCSC
T ss_pred             CEEEEEEEEEcCCcCCCCcCCcCC
Confidence            999999999999999877755443

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.2e-11  Score=107.49  Aligned_cols=79  Identities=19%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         702 DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       702 ~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      ++|+|+|++|... +++|.+|.|.++..+...|..... ....+.++|.+|.|++.|.|+|.|.|..|.|++|+...+.|
T Consensus        15 ~si~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T   92 (95)
T d2djsa1          15 RSITLSWPQPEQP-NGIILDYEIRYYEKEHNEFNSSMA-RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT   92 (95)
T ss_dssp             SEEEEECCCCSCC-SSCEEEEEEEEEETTSCSTTCEEE-EESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEEC
T ss_pred             CEEEEEEEECCCC-CcceEEeeeeeeeeccCcceeEee-cCCccEEEEeecCCccEEEEEEEEEcCCCCCCCCCCEEEEe
Confidence            3333344333322 346888888888877655544332 25678999999999999999999999999998887765554


Q ss_pred             e
Q psy8139         782 V  782 (1101)
Q Consensus       782 ~  782 (1101)
                      +
T Consensus        93 ~   93 (95)
T d2djsa1          93 L   93 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.9e-11  Score=105.42  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=66.0

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      +|.+|.++++...+.++|.|+|.+|..                                              ..++.+.
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~----------------------------------------------~~~~~~i   35 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRP----------------------------------------------RNPGGNL   35 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCS----------------------------------------------SCCSSCC
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccC----------------------------------------------CCCCcEE
Confidence            466777777777777777777776532                                              2334567


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +|.|.+...+.. +...    ...++++|.+|.|++.|.|+|.|.|..|.|++|+...+.|
T Consensus        36 ~Y~i~~~~~~~~-~~~~----~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          36 SYELHVLNQDEE-WHQM----VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT   91 (94)
T ss_dssp             EEEEEEECSSCE-EEEE----ESSSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEEC
T ss_pred             EEEEEEecCCce-EEEe----eccCEEEECCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEe
Confidence            888888876642 2222    3567899999999999999999999999999886555544

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.22  E-value=3.4e-12  Score=109.83  Aligned_cols=89  Identities=25%  Similarity=0.436  Sum_probs=80.6

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+.....+.+........|.|.++...|+|.|+|.|.|..|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            34567888999999999999999999999999999998888778788778888899999999999999999999999998


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      ..++.|.|.
T Consensus        82 ~~~~~l~V~   90 (91)
T d1tnna_          82 EAEFTLTIQ   90 (91)
T ss_dssp             CEEEEEECC
T ss_pred             EEEEEEEEE
Confidence            888888875

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=109.46  Aligned_cols=94  Identities=22%  Similarity=0.302  Sum_probs=67.6

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .+|++|.++.+...+.+++.|+|.+|.                                               +++++|
T Consensus         9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~-----------------------------------------------~~~~~i   41 (105)
T d1x3da1           9 CEPDIPNPPRIANRTKNSLTLQWKAPS-----------------------------------------------DNGSKI   41 (105)
T ss_dssp             SCCCCCCCCEEEEEETTEEEEECCCCC-----------------------------------------------CCSSCE
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEECCC-----------------------------------------------CCcCcc
Confidence            456777777777777777777777553                                               233457


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .+|.|+++......+.... ..+..+.+++.+|.|++.|.|+|+|.|..|.|++|+...+.|
T Consensus        42 ~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~T  102 (105)
T d1x3da1          42 QNFVLEWDEGKGNGEFCQC-YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT  102 (105)
T ss_dssp             EEEEEEECTTTSSSCCEEE-EEESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEEC
T ss_pred             EEEEEEEecCCCcceeEEE-ecCCccEEEecCCcCCcEEEEEEEEECCCeEcCCCCcEEEEC
Confidence            7777777655544333222 226778999999999999999999999999999887665443

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-11  Score=110.85  Aligned_cols=66  Identities=23%  Similarity=0.261  Sum_probs=46.3

Q ss_pred             CCCcceEEEEEEeCCCCCc---ee--ecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         716 GSPVLGYLVEHRRTGSPYW---VR--ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       716 ~~~i~~Y~V~~~~~~~~~~---~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      |++|.+|.|+|.......+   ..  ........+++.|.+|.|++.|.|+|.|.|..|.|++|+++..+.
T Consensus        38 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~~~  108 (111)
T d1wisa1          38 KTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ  108 (111)
T ss_dssp             SSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEE
T ss_pred             CCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEEEEEEcCCcCCCCcCCCCCEE
Confidence            3445566665554433221   11  111235678899999999999999999999999999998876554

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.9e-11  Score=104.51  Aligned_cols=67  Identities=13%  Similarity=0.022  Sum_probs=57.8

Q ss_pred             CCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         715 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       715 ~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      .++.+..|.|.|+..+...|...... ...+.++|.+|.|++.|.|+|+|.|..|.|.+|+++..+..
T Consensus        32 ~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~rVra~n~~g~g~wSewS~~~~~   98 (104)
T d1n26a3          32 SSFYRLRFELRYRAERSKTFTTWMVK-DLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG   98 (104)
T ss_dssp             CSSSCEEEEEEEEETTCSCCEEEECG-GGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEE
T ss_pred             CCceeEEEEEEEeeCCCCceeeeccc-cceEEEEECCCCCCCEEEEEEEEEeCCCccCCcCCcCCEEe
Confidence            44568999999999988888886654 66789999999999999999999999999999998876654

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-11  Score=114.65  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|..|..+.+.+++.+++.|+|++|...++..+..|.+                                      ..+.
T Consensus        17 ~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~--------------------------------------~~~~   58 (137)
T d1wk0a_          17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSV--------------------------------------PELY   58 (137)
T ss_dssp             HTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCS--------------------------------------CSCC
T ss_pred             CCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeecccc--------------------------------------ceEE
Confidence            45666677788888888999998887666544443321                                      2367


Q ss_pred             eEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcc
Q psy8139         721 GYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF  794 (1101)
Q Consensus       721 ~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~  794 (1101)
                      +|.|.+...+.. .|..+..  +..++++|.+|.|++.|.|+|+|.|..|.|++|....+.|....+.++.+|..
T Consensus        59 ~y~v~~~~~~~~~~~~~~~~--~~~~~~~i~~L~P~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~~p~~p~i  131 (137)
T d1wk0a_          59 GYEVLISSTGKDGKYKSVYV--GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRI  131 (137)
T ss_dssp             EEEEEECSSCTTSCCEEEEE--ESCSEEEECSCCTTCEECEEEEEEETTEECCCCCCCCEECCCSSSCCCSCSCC
T ss_pred             eeEEEEeeCCCCccEEEEEe--cCccEEEECCCCCCcEEEEEEEEEcCCcccCCCCCEEEECCCCCCCCCCCCEE
Confidence            888888766543 3444433  67789999999999999999999999999999988887776655556666654

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=2.3e-11  Score=108.21  Aligned_cols=41  Identities=22%  Similarity=0.230  Sum_probs=36.8

Q ss_pred             cCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       742 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      ...+.++|++|.|++.|.|+|.|.|..|.|++|..+..+.+
T Consensus        65 ~~~~~~~i~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          65 GKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEECSCCSSEEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             cceeEEEECCCcCCcEEEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            45678999999999999999999999999999988877765

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.1e-11  Score=111.37  Aligned_cols=112  Identities=28%  Similarity=0.413  Sum_probs=81.3

Q ss_pred             EEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCC
Q psy8139         636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG  715 (1101)
Q Consensus       636 l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~  715 (1101)
                      ..+.+.|++|.++.+..++.++|.|+|++|.+                                               +
T Consensus        11 ~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~~-----------------------------------------------~   43 (127)
T d1ueya_          11 APVYDVPNPPFDLELTDQLDKSVQLSWTPGDD-----------------------------------------------N   43 (127)
T ss_dssp             CCCCCSCCCCEEEEEECCSSSCEEEEEECCCC-----------------------------------------------C
T ss_pred             ccccccCcCCCCcEEEEecCCeEEEEEeCCcc-----------------------------------------------c
Confidence            34557888888888888888888888876543                                               2


Q ss_pred             CCCcceEEEEEEeCCCCC--ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCc
Q psy8139         716 GSPVLGYLVEHRRTGSPY--WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS  793 (1101)
Q Consensus       716 ~~~i~~Y~V~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~  793 (1101)
                      ++++..|.++|+..+...  |..... ......+.|.+|.|++.|.|+|+|.|..|.|.+|..+..+++. +..|..+|.
T Consensus        44 ~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~s~~S~~s~~~~t~-~~~P~~~P~  121 (127)
T d1ueya_          44 NSPITKFIIEYEDAMHKPGLWHHQTE-VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK-ASEPDKNPT  121 (127)
T ss_dssp             SSCEEEEEEEEEBTTTCTTCEEEEEE-EESSCCEEEECCCTTCEECCEEEEEESSCBCCCCSCCCCEECC-CSSCSSCSS
T ss_pred             ccceEeeeeeeccccccceeEEEEee-cCCceEEEECCCccCCEEEEEEEEEcCCcCcCCcCCcccEEcC-CCCCCCCCC
Confidence            335677777777654433  233222 2566789999999999999999999999999998877655543 467778886


Q ss_pred             ccc
Q psy8139         794 FIR  796 (1101)
Q Consensus       794 ~~~  796 (1101)
                      +..
T Consensus       122 ~~p  124 (127)
T d1ueya_         122 SGP  124 (127)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-11  Score=111.23  Aligned_cols=90  Identities=27%  Similarity=0.378  Sum_probs=65.6

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      +.|++|.++.+...+.++|.|+|.+|..++                                               ++|
T Consensus        19 ~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-----------------------------------------------g~i   51 (117)
T d1wfoa1          19 DVPGPPMGILFPEVRTTSVRLIWQPPAAPN-----------------------------------------------GII   51 (117)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSCCC-----------------------------------------------SCC
T ss_pred             CCCcCCCCcEEEEecCCEEEEEEECCCCCC-----------------------------------------------Cce
Confidence            456777777777777777777776554332                                               357


Q ss_pred             ceEEEEEEeCCCCCc-eeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         720 LGYLVEHRRTGSPYW-VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      .+|.|+|+..+...+ ........+.++++|.+|.|++.|.|+|.|.|..|.|++|+.
T Consensus        52 ~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  109 (117)
T d1wfoa1          52 LAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA  109 (117)
T ss_dssp             CEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEE
T ss_pred             EEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEEECCCcCCCCcCC
Confidence            888888877665433 222333367789999999999999999999999999887643

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.5e-11  Score=108.51  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=57.3

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  778 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~  778 (1101)
                      ++.+++.|+|++|.   ++++.+|.|+|+..+...|.....  ...++++|.+|.|++.|.|+|.|.|..|.|++|+...
T Consensus        22 ~~~~si~l~W~~p~---~~~i~~Y~i~y~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~   96 (102)
T d1x5za1          22 ESETSILLSWTPPR---SDTIANYELVYKDGEHGEEQRITI--EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEIS   96 (102)
T ss_dssp             SSSSEEEEEEECCS---CCCCCEEEECBEESSSCCCBCCEE--CSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEE
T ss_pred             ccCCEEEEEEECCC---CCCccceEEEEEeCCCCceEEEEc--CCcCEEEECCCCCCCEEEEEEEEEcCCCEeCCCCCEE
Confidence            34445555555442   235889999998877666555443  4667999999999999999999999999988876555


Q ss_pred             cEE
Q psy8139         779 PLT  781 (1101)
Q Consensus       779 ~~t  781 (1101)
                      +.|
T Consensus        97 ~~T   99 (102)
T d1x5za1          97 ART   99 (102)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.18  E-value=3.1e-11  Score=105.11  Aligned_cols=87  Identities=21%  Similarity=0.357  Sum_probs=78.4

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...++...|.|.++...|.|.|+|.|.|..|....++.|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   89 (97)
T d1koaa1          10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL   89 (97)
T ss_dssp             CCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECC
T ss_pred             CEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEE
Confidence            34788999999999999999999999999999988878877777778899999999999999999999999998888889


Q ss_pred             EEecCCC
Q psy8139         637 TVTDRPL  643 (1101)
Q Consensus       637 ~v~~~P~  643 (1101)
                      .|...+.
T Consensus        90 ~V~~~~~   96 (97)
T d1koaa1          90 NVTRHSE   96 (97)
T ss_dssp             EEECSCC
T ss_pred             EEeecCC
Confidence            9886554

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.1e-11  Score=104.08  Aligned_cols=98  Identities=13%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      |+.||.++.+..++.++|.|+|++|....+                                           .....+.
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~-------------------------------------------~~~~~~~   37 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKH-------------------------------------------QKITDSR   37 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSS-------------------------------------------SCCCSSC
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccc-------------------------------------------cceeeEE
Confidence            457888999999999999999997653332                                           1223467


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      +|.|.|+..+...+..... ....++++|.||.|++.|.|+|.|.|..|.|++|......|.
T Consensus        38 ~y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s~~S~~~~~~T~   98 (100)
T d1x5ja1          38 YYTVRWKTNIPANTKYKNA-NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF   98 (100)
T ss_dssp             EEEEEECBSSSSSCCCEEC-CBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCCCCEECC
T ss_pred             EEEEEeeecCCCcceeEec-CCCccEEEECCCCCCCEEEEEEEEEeCCcCcCCCCeEEEEec
Confidence            8888888776654433322 256788999999999999999999999999999987766654

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-11  Score=109.67  Aligned_cols=89  Identities=38%  Similarity=0.741  Sum_probs=77.2

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      +||+||+.|.++    .++.++|+|+|.+|..+||.+|.+|.+++.......|............+++.+|.+++.|.|+
T Consensus         1 ~Pp~pP~~p~~~----~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~fr   76 (104)
T d1bpva_           1 SPIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFR   76 (104)
T ss_dssp             CCCCCCCCCEEE----EEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEE
T ss_pred             CCCCCCCCCEEE----EecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEE
Confidence            478899999884    6778999999999988889899999999999888888777665567788999999999999999


Q ss_pred             EEEEecCCC-CCCC
Q psy8139         423 ITAENVVGF-SEPG  435 (1101)
Q Consensus       423 c~A~n~~G~-~~~s  435 (1101)
                      |.|.|..|. +.+|
T Consensus        77 V~A~n~~G~~s~~S   90 (104)
T d1bpva_          77 VIAKNAAGAISPPS   90 (104)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEEECCCCCCCCc
Confidence            999999996 4444

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.8e-11  Score=105.19  Aligned_cols=85  Identities=16%  Similarity=0.200  Sum_probs=68.1

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCC-CCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      ..++++|.|+|.+|... ++.+.+|.|.|+... ...|..+....+..++++|.+|.|++.|.|+|+|.|..|.|.+|++
T Consensus        17 ~~~~~~v~l~W~pp~~~-~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~g~G~~S~w   95 (105)
T d2d9qb2          17 PPQAGCLQLSWEPWQPG-LHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDW   95 (105)
T ss_dssp             --CCSCEEEEEECCGGG-TTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCC
T ss_pred             cCCCCeEEEEEcCCCCC-CceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeCCCCCCCcCC
Confidence            34677788888877544 456899999999765 4567666555567789999999999999999999999999999999


Q ss_pred             CCcEEec
Q psy8139         777 SEPLTVT  783 (1101)
Q Consensus       777 s~~~t~~  783 (1101)
                      +..++..
T Consensus        96 S~~~~~~  102 (105)
T d2d9qb2          96 SPSLELR  102 (105)
T ss_dssp             CCCEEEC
T ss_pred             CCCEEEe
Confidence            9888765

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.1e-11  Score=106.40  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      ++.+++.|+|++|...+ +.|.+|.|.|+..+...+..........++++|.+|.|++.|.|+|.|.|..|.|++|.
T Consensus        22 ~~~~sv~l~W~~P~~~n-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~   97 (106)
T d1wfna1          22 ILDTSLKVSWQEPGEKN-GILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA   97 (106)
T ss_dssp             CCSSEEEEECCCCTTCC-SCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEE
T ss_pred             ecCCEEEEEEECCCCCC-CcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEECCCCCcCCcC
Confidence            34444555555444333 46889999888776544332222336678999999999999999999999999988764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.16  E-value=6.1e-11  Score=101.10  Aligned_cols=86  Identities=22%  Similarity=0.427  Sum_probs=71.7

Q ss_pred             CCeeeecCc-eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIRALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~-~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      +|.|...|. .+.+.+|+++.|.|.+.|.|.|.++|+++|..+... ++.+.  ++  .|.|.++...|+|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe--ee--eEEECCCChhhCEEEEEEEEEC
Confidence            466766654 456889999999999999999999999999998643 44432  22  6999999999999999999999


Q ss_pred             CCceEEEEEEee
Q psy8139         531 AGHSITKARLRL  542 (1101)
Q Consensus       531 ~g~~~~s~~l~V  542 (1101)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888887776

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.9e-11  Score=102.29  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      .+.+|.|.|...+...+..... ....+.+.|.+|.|++.|.|+|.|+|..|.|++|+...+
T Consensus        28 ~~~~Y~i~y~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~   88 (92)
T d1qg3a1          28 KPMGYRVKYWIQGDSESEAHLL-DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSC   88 (92)
T ss_dssp             CCCEEEEEEEETTSCGGGCEEE-EESSSEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEE
T ss_pred             CccceEEeeeeccccccEEEEe-cCCccEEEECCCCCCcEEEEEEEEEeCCcCcCCCCCEEE
Confidence            3678888888776654443322 267789999999999999999999999999988765543

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.9e-11  Score=106.88  Aligned_cols=77  Identities=29%  Similarity=0.427  Sum_probs=55.6

Q ss_pred             eEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceee-cccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         703 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA-SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       703 si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      +|+|+|++|.. ++++|.+|.|+|+..++ .|... .......++++|.+|.|++.|.|+|.|+|..|.|++|+...+.+
T Consensus        22 si~l~W~pp~~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~g~s~~S~~~~~~T   99 (108)
T d1v5ja_          22 GVLLHWDPPEL-VPKRLDGYVLEGRQGSQ-GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST   99 (108)
T ss_dssp             SEEEEEECCSC-CSSCCCBEEEEEEETTC-CCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEETTEEEEECSCCCCCC
T ss_pred             EEEEEEEeccc-CCCceeEEEEEeeeeee-eeeeccccccceeeeEEEEeccCCcEEEEEEEEEeCCCEeCCcCceEEEC
Confidence            34444444432 33468889999887655 44443 23346778999999999999999999999999999887665543

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=7.2e-11  Score=104.61  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeC-CCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      ..++++|.|+|++|... ++.+++|.|+|+.. ++..|..+.....+.++++|.+|.|++.|.|+|+|.|..|.|.+|++
T Consensus        18 ~~~~~~i~v~W~pp~~~-~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~g~wS~w   96 (106)
T d1cd9b2          18 SHQPGCLWLSWKPWKPS-EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPW   96 (106)
T ss_dssp             --CCSCEEEEEECCGGG-TTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCC
T ss_pred             cCCCCEEEEEEcCcccC-CccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCCCCCCCcCC
Confidence            34667788888877544 45689999999875 55678887665567899999999999999999999999999999999


Q ss_pred             CCcEEec
Q psy8139         777 SEPLTVT  783 (1101)
Q Consensus       777 s~~~t~~  783 (1101)
                      +..+++.
T Consensus        97 S~~~~~~  103 (106)
T d1cd9b2          97 SPGLQLR  103 (106)
T ss_dssp             CCCEEEC
T ss_pred             CCCeEec
Confidence            9988764

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-10  Score=102.88  Aligned_cols=89  Identities=20%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      +.|++|.++.+...+.+++.|+|++|.+.+| ++.+|                                           
T Consensus         1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y-------------------------------------------   36 (103)
T d1qg3a2           1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAY-------------------------------------------   36 (103)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCSS-CCCEE-------------------------------------------
T ss_pred             CcCccCCCcEEEEecCCEEEEEEEECccCCC-CceEE-------------------------------------------
Confidence            4688999999999999999999997765443 44444                                           


Q ss_pred             ceEEEEEEeCCC-----CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         720 LGYLVEHRRTGS-----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       720 ~~Y~V~~~~~~~-----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                         .|.|+....     ..|..........++++|.+|.|++.|.|+|.|.|..|.|+++.
T Consensus        37 ---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          37 ---EVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE   94 (103)
T ss_dssp             ---EEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             ---EEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEEEEEEcCCccCCCcc
Confidence               444443322     12333333346678999999999999999999999999988763

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.9e-11  Score=108.64  Aligned_cols=104  Identities=30%  Similarity=0.581  Sum_probs=81.2

Q ss_pred             ccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCC-ceEEcCccccccceEEE
Q psy8139         332 NVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHMVEDTELMV  410 (1101)
Q Consensus       332 ~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~-~w~~~~~~~~~~~~l~i  410 (1101)
                      +.++.....+.+.|.+|..|.+.    .++.++|+|+|.+| .+++.+|.+|.|++...... .|..... ....+.++|
T Consensus         3 s~s~~~~~~~~~~P~pP~~~~v~----~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~v   76 (117)
T d1uema_           3 SGSSGKNYDLSDLPGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTV   76 (117)
T ss_dssp             CCCCSSCCCSCCSCBCCCCCEEE----EECSSCEEEECCCC-BCSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEE
T ss_pred             CCcCCCcceeCccCcCCCCCEEE----EccCCEEEEEEECC-CcCCCCeEEEEEEEeccCCceeeEEecc-ccccccceE
Confidence            33444566777889999888874    67899999999987 46677999999998765544 4654432 245578999


Q ss_pred             cCccCCccEEEEEEEEecCCCCCCCCCCcce
Q psy8139         411 SGLEPGWRYQFRITAENVVGFSEPGPLSEPL  441 (1101)
Q Consensus       411 ~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~v  441 (1101)
                      .+|.|++.|.|+|.|.|..|.+.+|..+..+
T Consensus        77 ~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~v  107 (117)
T d1uema_          77 RGLRPNTIYLFMVRAINPQGLSDPSPMSDPV  107 (117)
T ss_dssp             CSCCTTCEEEEEEEEEETTEEEEECCCCCCE
T ss_pred             CCCCCCCEEEEEEEEEeCCcCCCCcCCCcCE
Confidence            9999999999999999999998887665544

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.9e-11  Score=101.30  Aligned_cols=75  Identities=25%  Similarity=0.397  Sum_probs=59.3

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      .+.+++.|+|.||... +++|.+|.|+|+..+...|...... ...++++|.+|.|++.|.|+|.|.|..|.|++|.
T Consensus        11 ~~~~sv~l~W~pP~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~   85 (94)
T d2dn7a1          11 TAMNTALLQWHPPKEL-PGELLGYRLQYCRADEARPNTIDFG-KDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFE   85 (94)
T ss_dssp             CSTTEEEEEEECCSSC-SSCCCEEEEEEEETTCSSCEEEEEE-TTCCEEEEECCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred             EeCCEEEEEEeCCCCC-CCceEEEEEEEEEcCCCCcEEEEcC-CCccEEEEEccCCeeEEEEEEEEEcCCcCCCCcc
Confidence            3455666666665433 4579999999999888788765543 6778999999999999999999999999987653

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.5e-11  Score=102.34  Aligned_cols=87  Identities=36%  Similarity=0.542  Sum_probs=72.9

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI  423 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c  423 (1101)
                      ||++|.+|.+.   ...+.++|+|+|.+|..+||.+|++|.|+++..+...|.....  ....+++|.+|.+++.|.|+|
T Consensus         1 PP~p~~pp~~~---~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV   75 (97)
T d2crza1           1 PPGPCLPPRLQ---GRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRL   75 (97)
T ss_dssp             CCCCCCCCEEC---SCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECC
T ss_pred             CcCcCCCCEEe---eeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec--CCceEEEEcCCCCCEEEEEEE
Confidence            57777777753   2456789999999998888889999999999887777876532  456789999999999999999


Q ss_pred             EEEecCCCCCCC
Q psy8139         424 TAENVVGFSEPG  435 (1101)
Q Consensus       424 ~A~n~~G~~~~s  435 (1101)
                      .|.|..|.+.+|
T Consensus        76 ~A~N~~G~s~~S   87 (97)
T d2crza1          76 RAANKMGFGPFS   87 (97)
T ss_dssp             EEECSSCBCCCC
T ss_pred             EEecCCeEcCCc
Confidence            999999988766

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.12  E-value=6e-11  Score=101.74  Aligned_cols=86  Identities=28%  Similarity=0.348  Sum_probs=69.7

Q ss_pred             CCeeee-cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIR-ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~-~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      +|.+.. .|.++.+.+|++++|.|.+.|.|.|.+.|++++......    .  ......|.|.++...|+|.|+|.|.|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----W--LSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC----C--SBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE----e--eeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            455554 478899999999999999999999999999976433221    1  112238999999999999999999999


Q ss_pred             CCceEEEEEEeec
Q psy8139         531 AGHSITKARLRLE  543 (1101)
Q Consensus       531 ~g~~~~s~~l~V~  543 (1101)
                      .|.....+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9998888888875

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.1e-11  Score=107.70  Aligned_cols=91  Identities=22%  Similarity=0.412  Sum_probs=66.7

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCC
Q psy8139         701 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  778 (1101)
Q Consensus       701 ~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~  778 (1101)
                      +++|+|+|++|... ++.+.+|.|+|+...+..|.....  ..+..+.++|.+|.+++.|.|+|+|.|..|.|.+|+++.
T Consensus        20 ~~si~v~W~~p~~~-~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~a~~~~G~g~~S~~S~   98 (115)
T d1bqua2          20 SSILKLTWTNPSIK-SVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE   98 (115)
T ss_dssp             CSCEEEEEECCGGG-GTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCC
T ss_pred             CCEEEEEEeecccc-ccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEEEEeCCCccCCcCCcC
Confidence            44555555554433 346889999999888777765432  335678999999999999999999999999999998887


Q ss_pred             cEEec-CCCCCCCCC
Q psy8139         779 PLTVT-YQRSPAAAP  792 (1101)
Q Consensus       779 ~~t~~-~~~~P~~~p  792 (1101)
                      ..+.. .++.|..+|
T Consensus        99 ~~~~~T~~~~P~~~P  113 (115)
T d1bqua2          99 EASGITYEDRPSKEP  113 (115)
T ss_dssp             CEEEEECCCHHHHHH
T ss_pred             CEEEECCCCCCCCCc
Confidence            76654 334454444

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=105.31  Aligned_cols=86  Identities=14%  Similarity=0.190  Sum_probs=69.0

Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCC----CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      +..+++++|.|+|++|.  .+++|.+|.|.|+..+.    ..|..........++++|.+|.|++.|.|+|.|+|..|.|
T Consensus        24 ~~~~s~tsi~v~W~~p~--~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G  101 (120)
T d1ujta_          24 PVVLTPTTVQVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQG  101 (120)
T ss_dssp             CCCCBTTEEEEEEEESS--CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCC
T ss_pred             CEEeCCCeEEEEecCCC--CCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCc
Confidence            34578999999999885  24579999999987643    3566665555678899999999999999999999999999


Q ss_pred             CCCCCCCcEEec
Q psy8139         772 EPGPLSEPLTVT  783 (1101)
Q Consensus       772 ~~S~~s~~~t~~  783 (1101)
                      ++|+...+.|.+
T Consensus       102 ~~S~~~~~~T~e  113 (120)
T d1ujta_         102 MDSESKTVRTTE  113 (120)
T ss_dssp             CCCCCEEEEECS
T ss_pred             CCCCCEEEEeCC
Confidence            998766555543

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.1e-10  Score=103.75  Aligned_cols=97  Identities=30%  Similarity=0.580  Sum_probs=76.5

Q ss_pred             cCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-CceEEcCc-cccccceEEEcCccCCccE
Q psy8139         342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASP-HMVEDTELMVSGLEPGWRY  419 (1101)
Q Consensus       342 ~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~-~~~~~~~l~i~~L~p~d~y  419 (1101)
                      ..+|.+|..|.+.    .++.++|+|+|.++ .+|+.+|.+|.|+++..+. ..|..... ......++.|.+|.+++.|
T Consensus         8 ~~pP~~P~~~~v~----~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   82 (108)
T d1x4za1           8 LSPPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISY   82 (108)
T ss_dssp             CCCCCCCCCCEEE----ECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEE
T ss_pred             cCCCccCCCCEEE----EccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEE
Confidence            3578888888873    67899999999876 5778899999999987544 34554332 2245578999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCCcceEE
Q psy8139         420 QFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      .|+|.|.|..|.+.+|..|.++++
T Consensus        83 ~frV~A~N~~G~s~~S~pS~p~~~  106 (108)
T d1x4za1          83 KFRVRALNMLGESEPSAPSRPYVV  106 (108)
T ss_dssp             EEEEEEEETTEECCCCCCCCCEEC
T ss_pred             EEEEEEECCCcCCCCCCCCCCEEe
Confidence            999999999999988877666553

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.3e-10  Score=101.79  Aligned_cols=93  Identities=29%  Similarity=0.454  Sum_probs=73.3

Q ss_pred             CCeeeecCc--eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc--EEEEecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         452 APSFIRALH--DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR--QRIVTDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       452 ~P~~~~~p~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      ||.+...+.  +.++..|+++.|.|.+.|.|.|.+.|+++|..+.....  .........+.|.|.++...|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            456655444  44567899999999999999999999999998864321  22222344568999999999999999999


Q ss_pred             EeCCCceEEEEEEeecc
Q psy8139         528 TNRAGHSITKARLRLEA  544 (1101)
Q Consensus       528 ~n~~g~~~~s~~l~V~~  544 (1101)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999998888888754

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.3e-10  Score=100.84  Aligned_cols=76  Identities=20%  Similarity=0.343  Sum_probs=56.6

Q ss_pred             eEEEEeeCCC---CCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139         703 VFTIRWEPPE---YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  779 (1101)
Q Consensus       703 si~l~W~pP~---~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~  779 (1101)
                      +|.|+|++|.   .++++.+++|.|.|+..+...|.....  ...+.++|.+|.|++.|.|+|+|.|..|.  +|+++..
T Consensus        22 ~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~rVra~~~~G~--wS~wS~~   97 (103)
T d1f6fb2          22 YLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFT--GHQTQFKVFDLYPGQKYLVQTRCKPDHGY--WSRWSQE   97 (103)
T ss_dssp             CEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEE--ETCSEEEECCCCTTCEEEEEEEEEESSSC--CCCCCCC
T ss_pred             EEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecc--cceeEEEeCCCCcceEEEEEEEEEeCCCC--CCCCcCc
Confidence            3444444432   234456889999999999988887655  57789999999999999999999999885  3444444


Q ss_pred             EEe
Q psy8139         780 LTV  782 (1101)
Q Consensus       780 ~t~  782 (1101)
                      .++
T Consensus        98 ~~~  100 (103)
T d1f6fb2          98 SSV  100 (103)
T ss_dssp             EEE
T ss_pred             eee
Confidence            443

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=101.97  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|.+|.++.+...+++++.|+|.+|...++.                                            .....
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~--------------------------------------------~~~~~   36 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNY--------------------------------------------LYNHL   36 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTST--------------------------------------------TGGGC
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCc--------------------------------------------cceee
Confidence            3788888888888888888888876543321                                            11245


Q ss_pred             eEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         721 GYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .|.|.|+..+...|.....  .....+.++|.+|.|++.|.|+|+|.|..|.|++|+++..++
T Consensus        37 ~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA~~~~g~g~wSewS~~v~   99 (101)
T d1iarb2          37 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK   99 (101)
T ss_dssp             EEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEEEECGGGTCCCCCCCCCEE
T ss_pred             EEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEEEEcCCCCCCCcCCCCCEE
Confidence            7999998887766654322  224457789999999999999999999999999999998765

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=98.95  Aligned_cols=56  Identities=21%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ++.+|.|.|...+...|......+.+.++++|.+|.|++.|.|+|.|+|..|.|+|
T Consensus        27 ~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p   82 (89)
T d1fnfa3          27 TITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL   82 (89)
T ss_dssp             CCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCC
T ss_pred             EEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCcCcCC
Confidence            46788888887776666554444577899999999999999999999999999765

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.09  E-value=1.5e-10  Score=99.76  Aligned_cols=92  Identities=28%  Similarity=0.400  Sum_probs=79.9

Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      +|.+..++   ..+.+..|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.
T Consensus         2 ~P~i~~~~---~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTAS---RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCC---CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEeCC---CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence            34454433   356889999999999999999999999999999988888888888888899999999999999999999


Q ss_pred             eCCCCceeEEEEEEe
Q psy8139         625 NSLGEDVASFLVTVT  639 (1101)
Q Consensus       625 N~~G~~~~s~~l~v~  639 (1101)
                      |..|..+....|.|.
T Consensus        79 N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          79 NELGEDEAIFEVIVQ   93 (93)
T ss_dssp             ETTEEEEEEEEEEEC
T ss_pred             ECCCEEEEEEEEEEC
Confidence            999998888887763

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-10  Score=103.98  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=69.8

Q ss_pred             CCCCCCCcccCC--CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC---ceeecccccCccEEEEcCCCCCceE
Q psy8139         684 PGPPGKPQLLPD--SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGLEPGWRY  758 (1101)
Q Consensus       684 ~~~p~~p~~~~~--~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~t~Y  758 (1101)
                      ++.|..|+....  ....+.+++.|+|++|... +++|.+|.|.|.......   |.... ...+.++++|.+|.|++.|
T Consensus         8 ~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y   85 (111)
T d1x5ka1           8 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEA-NGKITGYIIYYSTDVNAEIHDWVIEP-VVGNRLTHQIQELTLDTPY   85 (111)
T ss_dssp             CCCCCSCCEEEEEEECSSCTTCEEEEEECCSCC-SSCCCEEEEEEESCSSSCTTTSEEEE-ESTTCSEEEECSCCSSSEE
T ss_pred             CCCCCCCCCCcEEEEecCCCCEEEEEEEccccC-CCceeeeEEeeeecCCCCcceeEEEE-eCCCeeEEEECCCCCCCEE
Confidence            445554443221  2346788999999998654 568999999998765543   33332 2367789999999999999


Q ss_pred             EEEEEEEcCCccCCCCCCCCcE
Q psy8139         759 QFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       759 ~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      .|+|.|.|..|.|++|+...+.
T Consensus        86 ~~~V~A~n~~G~g~~S~~v~~~  107 (111)
T d1x5ka1          86 YFKIQARNSKGMGPMSEAVQFR  107 (111)
T ss_dssp             EEEEEEECSSCBCCCCCCEEEE
T ss_pred             EEEEEEEcCCCCcCCCCCEEEE
Confidence            9999999999999887654443

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.9e-10  Score=99.73  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=65.2

Q ss_pred             CCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       696 ~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ...++.+++.|+|++|.   ++++.+|.|.|+..++..|..........++++|.+|.|++.|.|+|.|.|..|.|+|+
T Consensus        14 v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~   89 (95)
T d2fnba_          14 FVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPT   89 (95)
T ss_dssp             EECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETTEECCCC
T ss_pred             EEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCCcEeCCE
Confidence            34688999999999874   34689999999998877777666555788999999999999999999999999997764

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.5e-10  Score=101.66  Aligned_cols=68  Identities=19%  Similarity=0.106  Sum_probs=50.6

Q ss_pred             CCCCCCcceEEEEEEeCCCCCceeec--ccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         713 YDGGSPVLGYLVEHRRTGSPYWVRAS--PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       713 ~~~~~~i~~Y~V~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      ...++++.+|.|.|+..++..+....  .......+++|.+|.|++.|.|+|.|.|..|.|++|+.....
T Consensus        28 ~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~s~~S~~~~~~   97 (101)
T d1x4ya1          28 SNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICE   97 (101)
T ss_dssp             TSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCCCEEEE
T ss_pred             cccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCCcEEEE
Confidence            34556788888888876654432211  223567889999999999999999999999998887655443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.5e-10  Score=95.87  Aligned_cols=81  Identities=19%  Similarity=0.365  Sum_probs=66.3

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      |.|...|.+..+..|+++.|.|.+.|.|.| .++|+++|..+....         ...++|......|+|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~---------~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---------PSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---------ESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC---------CcceEEecCCccccEEEEEEEEcCC
Confidence            778889999999999999999999999998 899999999886432         1135566667789999999999999


Q ss_pred             CceEE-EEEEee
Q psy8139         532 GHSIT-KARLRL  542 (1101)
Q Consensus       532 g~~~~-s~~l~V  542 (1101)
                      |...+ .+.|.|
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            96544 466655

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.1e-10  Score=104.28  Aligned_cols=99  Identities=14%  Similarity=0.165  Sum_probs=73.0

Q ss_pred             CCCCCCCCcccCCCCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEeCCCCCceeec----ccccCccEEEEcCCCCCce
Q psy8139         683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRAS----PHMVEDTELMVSGLEPGWR  757 (1101)
Q Consensus       683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~~~~~----~~~~~~~~~~i~~L~p~t~  757 (1101)
                      .++.|+.|+........+.+++.|+|.+|. .+.++++.+|.|.|+..+...+....    ........++|.+|.|++.
T Consensus         4 ~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   83 (109)
T d1va9a1           4 EEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQ   83 (109)
T ss_dssp             SCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCC
T ss_pred             cCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceE
Confidence            345555444433445678999999999864 44567899999999987654433211    1225568899999999999


Q ss_pred             EEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         758 YQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       758 Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      |.|+|.|.|..|.|++|.+..+.|
T Consensus        84 Y~~~V~a~n~~G~g~~S~~v~~~T  107 (109)
T d1va9a1          84 YGVVVQAFNRAGTGPSSSEINATT  107 (109)
T ss_dssp             EEEEEEEEETTEECCCCCCEECCC
T ss_pred             EEEEEEEEcCCcCCCCCCCEEEEc
Confidence            999999999999998876655443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.5e-10  Score=96.34  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|++|.++++..++.+++.|+|++|..                                                 +.+.
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~-------------------------------------------------~~~~   32 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRFL-------------------------------------------------NHCL   32 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSSC-------------------------------------------------STTC
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCCC-------------------------------------------------ceeE
Confidence            489999999999999999999986531                                                 1367


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCc---cCCCCCCCCcEE
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG---FSEPGPLSEPLT  781 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G---~g~~S~~s~~~t  781 (1101)
                      .|.|+|+..+...|.....  ...+.++|.+|.|++.|.|+|+|.+..|   .|.+|++|..++
T Consensus        33 ~y~v~y~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~frVRa~~~~~~~~~g~WSeWS~pv~   94 (95)
T d2b5ic1          33 EHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIH   94 (95)
T ss_dssp             EEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEE
T ss_pred             EEEEEEEcCCCceeeEeee--cccceeEcCCCCCCCEEEEEEEEeeCCCCCCCCCccCCCCcee
Confidence            8999999998888887655  5678999999999999999999987765   455777776553

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.6e-10  Score=99.18  Aligned_cols=92  Identities=22%  Similarity=0.309  Sum_probs=77.0

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEe----e--cCCcEEEEecCCeeEEEEeecC-CCCCEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEI----F--SSRRQRIVTDNDISTLIIHQAA-LMDEGEI  523 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~----~--~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y  523 (1101)
                      ||.|...+.+..+.+|+.++|.|.+.|.|.+ .+.|++++...    .  ...++.+...+..+.|.|.++. ..|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            6888888899999999999999999999988 69999865322    1  2345677777788899999998 5799999


Q ss_pred             EEEEEeCCCceEEEEEEeec
Q psy8139         524 KCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       524 ~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +|.|.|..|.....+.|.|.
T Consensus        82 ~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEC
Confidence            99999999999888888773

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.07  E-value=2.5e-10  Score=96.97  Aligned_cols=81  Identities=28%  Similarity=0.420  Sum_probs=59.9

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|.+|.++.+..++.++|.|+|++|.+++                                                .+.
T Consensus         3 AP~~P~~l~~~~~~~~sv~lsW~~p~~~~------------------------------------------------~i~   34 (88)
T d1k85a_           3 APTAPTNLASTAQTTSSITLSWTASTDNV------------------------------------------------GVT   34 (88)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCCS------------------------------------------------SEE
T ss_pred             CcCCCCCcEEEEecCCEEEEEEeCCCCCC------------------------------------------------CEE
Confidence            57888889888888888888888765332                                                256


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCc-cCCCCCCC
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLS  777 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~s  777 (1101)
                      +|.|.+..      .....  ...+++++.+|.|++.|.|+|+|+|..| .|++|+..
T Consensus        35 ~Y~i~~~~------~~~~~--~~~t~~~~~~L~p~t~Y~~~V~A~n~~G~~s~~S~~v   84 (88)
T d1k85a_          35 GYDVYNGT------ALATT--VTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAV   84 (88)
T ss_dssp             EEEEEESS------SEEEE--ESSSEEEECCCCSSCEEEEEEEEEETTTEECCCCCCE
T ss_pred             EEEEEccc------eEEEe--cCCCEEEECCCCCCCEEEEEEEEEECCCCcCCCCcCE
Confidence            66665421      11111  4568899999999999999999999999 67776543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.07  E-value=2.3e-10  Score=97.40  Aligned_cols=79  Identities=33%  Similarity=0.483  Sum_probs=70.9

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+++.|.|.+.|.|.|.+.|+++|.++..+.++.+.    ..+|.|.++...|.|.|+|.|.|..|....+..|
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (89)
T d1cs6a4          10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL   85 (89)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee----eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEE
Confidence            457889999999999999999999999999999887777664    4579999999999999999999999998888888


Q ss_pred             EEe
Q psy8139         637 TVT  639 (1101)
Q Consensus       637 ~v~  639 (1101)
                      .|.
T Consensus        86 ~V~   88 (89)
T d1cs6a4          86 TVQ   88 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-10  Score=98.30  Aligned_cols=81  Identities=28%  Similarity=0.450  Sum_probs=64.1

Q ss_pred             CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceE
Q psy8139         643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  722 (1101)
Q Consensus       643 ~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y  722 (1101)
                      ++|.++.+..++.+++.|+|++|.                                                  +++.+|
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p~--------------------------------------------------~~i~~Y   31 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPPR--------------------------------------------------ARITGY   31 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCS--------------------------------------------------SCCSEE
T ss_pred             ccCcCCEEEEecCCEEEEEEeCCC--------------------------------------------------cCCceE
Confidence            467788888777777877777542                                                  247788


Q ss_pred             EEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         723 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       723 ~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      .|+|...++..|..........++++|.+|.|++.|.|+|.|+|..|.|+|
T Consensus        32 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g~S~p   82 (89)
T d1fnha3          32 IIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP   82 (89)
T ss_dssp             EEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSCEEEE
T ss_pred             EEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCCEeCC
Confidence            888888777666665555567889999999999999999999999998654

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.3e-10  Score=97.98  Aligned_cols=57  Identities=12%  Similarity=0.113  Sum_probs=46.0

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ++.+|.|.|...++..+.......++.++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus        28 ~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~   84 (90)
T d1tena_          28 EIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPA   84 (90)
T ss_dssp             CCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeCCCEeCCE
Confidence            467888888877665544444444788999999999999999999999999997764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.06  E-value=3.9e-10  Score=99.00  Aligned_cols=84  Identities=23%  Similarity=0.455  Sum_probs=74.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+...+ +..+|.|.++...|.|.|+|.|.|..|....++.
T Consensus        17 ~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   96 (102)
T d1fhga_          17 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAE   96 (102)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEE
Confidence            457889999999999999999999999999999988888776543 4678999999999999999999999999988888


Q ss_pred             EEEec
Q psy8139         636 VTVTD  640 (1101)
Q Consensus       636 l~v~~  640 (1101)
                      |.|..
T Consensus        97 L~V~s  101 (102)
T d1fhga_          97 LLVET  101 (102)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88863

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.3e-10  Score=99.36  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=47.7

Q ss_pred             CCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc-CCCCCCC
Q psy8139         716 GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLS  777 (1101)
Q Consensus       716 ~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~s  777 (1101)
                      +..+..|.+.+...++..|.....  ...+.++|.+|.|++.|.|+|+|.|..|. |++|+..
T Consensus        38 ~~~~~~Y~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~rVrA~n~~G~ws~wS~~~   98 (104)
T d3d48r2          38 GWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT   98 (104)
T ss_dssp             SSCCEEEEEEEEETTCSSCEEEEE--ETCSEEEECC--CCCEEEEEEEEEESSSCCCCCCCCE
T ss_pred             CcEEEEEeeccccccccceeeecc--ccccEEEECCCCCCCEEEEEEEEEeCCCCCCCCcCCE
Confidence            345788999999998888876655  67789999999999999999999999986 6665443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=2.1e-10  Score=98.42  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      +.|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...........++ ++|.|.++...|+|.|+|.|.|..|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcC
Confidence            457778899999999999999999999999999999999887664433332222 2699999999999999999999887


Q ss_pred             ceEEEEEEee
Q psy8139         533 HSITKARLRL  542 (1101)
Q Consensus       533 ~~~~s~~l~V  542 (1101)
                      .......+.|
T Consensus        81 ~~~~~~~i~V   90 (92)
T d1epfa2          81 GEINFKDIQV   90 (92)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            7666655554

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.9e-10  Score=98.47  Aligned_cols=79  Identities=27%  Similarity=0.423  Sum_probs=60.8

Q ss_pred             ceEEEEeeCCCC---CCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCC
Q psy8139         702 DVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  778 (1101)
Q Consensus       702 ~si~l~W~pP~~---~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~  778 (1101)
                      ++|.|+|++|..   +++..+..|.|.|+..++..|..+..  ...+.++|.+|.+++.|.|+|+|.|.. .|.+|++|.
T Consensus        21 ~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y~frVRa~~~~-~g~ws~wS~   97 (106)
T d1axib2          21 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRN-SGNYGEFSE   97 (106)
T ss_dssp             EEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETT-SSCCCCCCC
T ss_pred             CeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEEEEEEEEEECC-CCCCCCCCC
Confidence            345556665533   23345789999999999999988765  567899999999999999999999864 456677777


Q ss_pred             cEEec
Q psy8139         779 PLTVT  783 (1101)
Q Consensus       779 ~~t~~  783 (1101)
                      .+.+.
T Consensus        98 ~v~v~  102 (106)
T d1axib2          98 VLYVT  102 (106)
T ss_dssp             CEEEC
T ss_pred             CEEEE
Confidence            77664

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.05  E-value=1.1e-10  Score=101.42  Aligned_cols=82  Identities=23%  Similarity=0.366  Sum_probs=67.9

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      ...+..|+++.|.|.+.|.|.|.+.|+++|..+....+.. .....+.++|.|.++...|+|.|+|.|.|..|....++.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            3567899999999999999999999999999987543321 122233458999999999999999999999999888888


Q ss_pred             Eee
Q psy8139         540 LRL  542 (1101)
Q Consensus       540 l~V  542 (1101)
                      |.|
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.3e-10  Score=97.13  Aligned_cols=86  Identities=23%  Similarity=0.347  Sum_probs=71.3

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecC--CeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN--DISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      .|.++.+..|+++.|.|.+.|.|.|.+.|++++..+.......+....  ....|.|.++...|+|.|+|.|.|..|...
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            467889999999999999999999999999999998776655444333  345799999999999999999999999754


Q ss_pred             -EEEEEeec
Q psy8139         536 -TKARLRLE  543 (1101)
Q Consensus       536 -~s~~l~V~  543 (1101)
                       ..+.|.|.
T Consensus        82 S~~~~l~V~   90 (91)
T d1rhfa1          82 SQPVWLTVE   90 (91)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence             35667664

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.05  E-value=5.7e-10  Score=97.08  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=73.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEE-EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI-THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++.++..+.+... ...++..+|.|.++...|.|.|+|.|.|..|..+..+.
T Consensus        13 ~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   92 (98)
T d1g1ca_          13 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF   92 (98)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEE
Confidence            45788999999999999999999999999999987766544 34455778999999999999999999999999988888


Q ss_pred             EEEec
Q psy8139         636 VTVTD  640 (1101)
Q Consensus       636 l~v~~  640 (1101)
                      |.|..
T Consensus        93 L~V~~   97 (98)
T d1g1ca_          93 LLVQA   97 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88863

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=3.9e-10  Score=97.72  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=76.0

Q ss_pred             CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ..+|.+.  +.+..+.+|++++|.|.+.+ +.+.+.|+++|..+....+..+....  .+|.|.++...|.|.|+|.|.|
T Consensus         3 v~~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~--~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2           3 VTQPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             CCCCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTT--TEEEECSCCGGGCEEEEEEEES
T ss_pred             CCCCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCc--eEEEEeccchhhceEEEEEEEe
Confidence            3556553  56778999999999999876 55799999999999888777765544  4899999999999999999999


Q ss_pred             CCCceEE-EEEEeeccCC
Q psy8139         530 RAGHSIT-KARLRLEAPP  546 (1101)
Q Consensus       530 ~~g~~~~-s~~l~V~~~p  546 (1101)
                      ..|...+ .+.|.|..+|
T Consensus        78 ~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          78 PVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             SSCCEECCCCEEEECCSC
T ss_pred             CCCCeEEEeEEEEEEcCC
Confidence            9987754 5788888776

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.3e-10  Score=95.35  Aligned_cols=74  Identities=23%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      ++++++.|+|++|.    +++.+|.|.|...++..+......+++.++++|.+|.|++.|.|+|.|+|..|.|+++..
T Consensus         8 ~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~~s~   81 (91)
T d1fnaa_           8 ATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK   81 (91)
T ss_dssp             ECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSCSCC
T ss_pred             eCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCCCcCC
Confidence            34455555555542    347889999988776666554444478899999999999999999999999999887643

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-10  Score=114.85  Aligned_cols=139  Identities=18%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCC----------------------------------
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP----------------------------------  686 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~----------------------------------  686 (1101)
                      .|++|.++.+...+.+++.|+|++|.++|| .|.+|.|+|......                                  
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~~~~   80 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQ   80 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCTTCSSSCSCCCCCC-----------------
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCceeEEeeEEeccccceeEEEEEEEEEcCCcccc
Confidence            589999999999999999999999988776 899999988221000                                  


Q ss_pred             -------------CCCCcccC------CCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEE
Q psy8139         687 -------------PGKPQLLP------DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL  747 (1101)
Q Consensus       687 -------------p~~p~~~~------~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~  747 (1101)
                                   +..+....      .........+.+.|..+..... ....|.+.+...+...+...  ...+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  157 (196)
T d2dtge2          81 SEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGNAGNNEEHRPFE--KVVNKESL  157 (196)
T ss_dssp             ----------------------------------------------------------------CCSCSC--EECSCSEE
T ss_pred             CcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCcc-ceEEEEEEeecCCCccEEEE--eccceEEE
Confidence                         00000000      0012233344555554322211 12223333333332222222  22577899


Q ss_pred             EEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      +|.+|.|++.|.|+|.|+|..|.|.++..+..++..
T Consensus       158 ~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~r  193 (196)
T d2dtge2         158 VISGLRHFTGYRIELQACNQDTPEERCSVAAYVSAR  193 (196)
T ss_dssp             EECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEE
T ss_pred             EECCCCCCCEEEEEEEEEECCCCCCCccCcceEEee
Confidence            999999999999999999999999887666666553

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2e-10  Score=98.04  Aligned_cols=72  Identities=22%  Similarity=0.380  Sum_probs=59.4

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC-ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ..++++.|+|++|.   +++|.+|.|+|+..++.. |..+ ..+++.++++|.||.|++.|.|+|.|+|..|.|+++
T Consensus        13 ~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~-~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~   85 (93)
T d1owwa_          13 SQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT   85 (93)
T ss_dssp             SCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEE-EECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeee-ccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence            45689999999984   357999999999876654 4443 344788999999999999999999999999997654

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.3e-10  Score=101.70  Aligned_cols=57  Identities=19%  Similarity=0.142  Sum_probs=45.6

Q ss_pred             CCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139         717 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  775 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~  775 (1101)
                      ++|.+|.|+|+..+...+.....  .+.+.++|.+|.|++.|.|+|.|.|..|.|+++.
T Consensus        48 g~i~~Y~i~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~~~  104 (113)
T d1x5ia1          48 IVVRGYAIGYGIGSPHAQTIKVD--YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY  104 (113)
T ss_dssp             BCCCEEEEEECSSCGGGEEEECC--TTCCEEEECSCCSSCEECCEEEEECSSCBCCCCC
T ss_pred             ccEEEEEEEeeeccccceeeeee--CCccEEEEeccccCcEEEEEEEEECCCcCCCCee
Confidence            46788888887766544444333  6788999999999999999999999999988643

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.03  E-value=5.5e-10  Score=99.59  Aligned_cols=92  Identities=26%  Similarity=0.347  Sum_probs=69.9

Q ss_pred             CCCeeeec-CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec----CC---------cEEEEecCCeeEEEEeecC
Q psy8139         451 AAPSFIRA-LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS----SR---------RQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       451 ~~P~~~~~-p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~----~~---------~~~~~~~~~~~~l~I~~l~  516 (1101)
                      .+|.|... |.++++..|+++.|.|.+.|.|.|.|.|++++.....    ..         ..........+.|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            45666554 7899999999999999999999999999986543211    00         0111112234689999999


Q ss_pred             CCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139         517 LMDEGEIKCTATNRAGHSITKARLRL  542 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~~g~~~~s~~l~V  542 (1101)
                      ..|+|.|+|.|.|..|....++.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999999988877

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-10  Score=102.13  Aligned_cols=90  Identities=17%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             cCCCCCCCCcccCCCCCCCCceEEEEeeCC-CCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEE
Q psy8139         682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPP-EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQF  760 (1101)
Q Consensus       682 ~~~~~p~~p~~~~~~~~~~~~si~l~W~pP-~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  760 (1101)
                      +..++|+.|+... ....+.+++.|+|++| ..+.++.|++|.|+|+..+...|....    ....+.+.+|.|++.|.|
T Consensus        13 T~~~~P~~pp~~~-~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~----~~~~~~~~~L~p~t~Y~~   87 (117)
T d1wj3a_          13 TKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLN----TNKTSAELVLPIKEDYII   87 (117)
T ss_dssp             CSCCCCCCCCCSC-BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEE----ESSSEEEEECCCSSCEEE
T ss_pred             cCCCCcCCCCcce-EEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeee----ceeeEEEeeccCCcEEEE
Confidence            3455666655443 2356789999999984 445667899999999998876665432    345677789999999999


Q ss_pred             EEEEEcCCccCCCCCC
Q psy8139         761 RITAENVVGFSEPGPL  776 (1101)
Q Consensus       761 ~V~A~n~~G~g~~S~~  776 (1101)
                      +|.|.|..|.|++|+.
T Consensus        88 ~V~A~n~~G~G~~S~~  103 (117)
T d1wj3a_          88 EVKATTDGGDGTSSEQ  103 (117)
T ss_dssp             EEEEEESSCCCCBCCC
T ss_pred             EEEEEcCCccCCCCCC
Confidence            9999999999888754

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=9.5e-11  Score=107.12  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       640 ~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      ..|++|.++.+.. +.++|.|+|.+|.+++| +|++|.|+|............                          -
T Consensus         6 ~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~--------------------------~   57 (123)
T d1wfta_           6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPS--------------------------Q   57 (123)
T ss_dssp             SCCCCCEEEEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSC--------------------------C
T ss_pred             CCCcCCcccEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccc--------------------------e
Confidence            4688888888764 67889999998877665 788888877543221111000                          0


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      ..+...+...   .+...  .......++|.+|.|++.|.|+|.|.|..|.|++|+..
T Consensus        58 ~~~~~~~~~~---~~~~~--~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~  110 (123)
T d1wfta_          58 LVFMRIYCGL---KTSCT--VTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR  110 (123)
T ss_dssp             CEEEEEEEES---CSEEE--EEHHHHTTCCCBCSSSCEEEEEEEEBSSSSBCCCEEEE
T ss_pred             eeeEEEecCC---ceeEe--ecCCccEEEEcCCCCCCEEEEEEEEecCCcCCCCCCcE
Confidence            0111111111   11111  11455677899999999999999999999998876543

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.02  E-value=2.7e-10  Score=99.71  Aligned_cols=96  Identities=26%  Similarity=0.409  Sum_probs=71.8

Q ss_pred             ccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCce-EEcCccccccceEEEcCccCCccE
Q psy8139         341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-VRASPHMVEDTELMVSGLEPGWRY  419 (1101)
Q Consensus       341 v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w-~~~~~~~~~~~~l~i~~L~p~d~y  419 (1101)
                      |.++|++|..+.+     ..+.++++|+|.+|. +++.+|.+|.|+++......| ...........++.+.+|.|++.|
T Consensus         2 V~dvP~~P~~~~v-----~~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y   75 (100)
T d1cfba1           2 VQDVPNAPKLTGI-----TCQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANY   75 (100)
T ss_dssp             CCCCCCCCEEEEE-----EECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEE
T ss_pred             cccCCCcCcCcEE-----EEcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEE
Confidence            3455665555543     345689999999985 566799999999987665543 333333345578999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCCcceE
Q psy8139         420 QFRITAENVVGFSEPGPLSEPLT  442 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~~s~~s~~vt  442 (1101)
                      .|++.|.|..|.|.+|..+..++
T Consensus        76 ~frV~A~n~~G~g~~S~~s~~vt   98 (100)
T d1cfba1          76 TFRVIAFNKIGASPPSAHSDSCT   98 (100)
T ss_dssp             EEEEEEEETTEECCCCCCCCCEE
T ss_pred             EEEEEEEeCCcCCCCcCCCcCEE
Confidence            99999999999998887666554

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.6e-10  Score=95.74  Aligned_cols=56  Identities=18%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ++.+|.|.|+..++..+..........++++|.+|.|++.|.|+|.|.|..|.|++
T Consensus        28 ~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~p   83 (91)
T d1fnfa2          28 DLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP   83 (91)
T ss_dssp             CCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             CcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCCCCCC
Confidence            47889999988777655554444467899999999999999999999999999665

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.02  E-value=1.6e-10  Score=99.10  Aligned_cols=83  Identities=29%  Similarity=0.487  Sum_probs=75.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|+++|..+..+..+.+.......+|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus         8 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1tnna_           8 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL   87 (91)
T ss_dssp             CEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred             CEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence            45788899999999999999999999999999988888888888888999999999999999999999999998888887


Q ss_pred             EEe
Q psy8139         637 TVT  639 (1101)
Q Consensus       637 ~v~  639 (1101)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1tnna_          88 TIQ   90 (91)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.3e-09  Score=96.08  Aligned_cols=99  Identities=23%  Similarity=0.364  Sum_probs=76.7

Q ss_pred             eccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe----ecceEEEEEccCCCCCCe
Q psy8139         542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH----TDRYLNLRISDARRADRG  617 (1101)
Q Consensus       542 V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~----~~~~~sl~i~~l~~~~~y  617 (1101)
                      |..||.+......      ..+....+.|.+.|.|.|.+.|+++|.++..+.......    ....+.|.|.++...|.|
T Consensus         2 V~~PP~i~~~~~~------~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   75 (105)
T d1wwca_           2 VYYPPRVVSLEEP------ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   75 (105)
T ss_dssp             CCCCCCCCCCCCC------CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEcCCeeEEeCCC------EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccce
Confidence            5667766432221      124455688899999999999999999998766544332    122467999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEecCCCCCC
Q psy8139         618 EYQAHGVNSLGEDVASFLVTVTDRPLPPG  646 (1101)
Q Consensus       618 ~y~c~A~N~~G~~~~s~~l~v~~~P~~P~  646 (1101)
                      .|+|.|.|..|..+.+..+.|..+|.|+.
T Consensus        76 ~Y~C~a~N~~G~~~~~~~v~V~~~P~P~~  104 (105)
T d1wwca_          76 NYTLIAKNPLGTANQTINGHFLKEPFPVD  104 (105)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSCCCCCSC
T ss_pred             EEEEEEEcCCCEEEEEEEEEEEeCCCCCC
Confidence            99999999999999999999999888764

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.9e-10  Score=94.75  Aligned_cols=76  Identities=21%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+..        .+  ..|.|.++...|+|.|+|.|.|..|.......|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~--------~~--~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------GG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE--------ES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee--------ee--eeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            45688999999999999999999999987654322        22  279999999999999999999999999888888


Q ss_pred             eeccCC
Q psy8139         541 RLEAPP  546 (1101)
Q Consensus       541 ~V~~~p  546 (1101)
                      .|...|
T Consensus        78 ~V~~~~   83 (84)
T d2nxyb2          78 VVLAFQ   83 (84)
T ss_dssp             CEECCC
T ss_pred             EEEecC
Confidence            887655

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.00  E-value=8e-10  Score=93.92  Aligned_cols=55  Identities=22%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      ++.+|.|.|...+...|..... ....++++|.+|.|++.|.|+|.|.|..|.|+|
T Consensus        27 ~~~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p   81 (88)
T d1qr4a2          27 RVDSYRVSYVPITGGTPNVVTV-DGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP   81 (88)
T ss_dssp             CCSEEEEEEEETTCCCCEEEEE-ETTCCEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             eeceEEEEEEeccCCceEEEEe-cCCccEEEECCCCCCCEEEEEEEEEeCCCCcCC
Confidence            4788999999887776665543 367789999999999999999999999999766

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=8.5e-10  Score=94.90  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             CCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcce
Q psy8139         642 PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG  721 (1101)
Q Consensus       642 P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~  721 (1101)
                      +++|.++.+..++.+++.|+|++|.                                                  +++.+
T Consensus         4 ~~~P~~l~v~~v~~~si~v~W~~p~--------------------------------------------------~~~~~   33 (93)
T d1tdqa1           4 IDGPTQILVRDVSDTVAFVEWTPPR--------------------------------------------------AKVDF   33 (93)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEECCS--------------------------------------------------SCCSE
T ss_pred             CCcCCCCEEEEeCCCEEEEEEEccc--------------------------------------------------cCCCc
Confidence            4677788887777777777777542                                                  24678


Q ss_pred             EEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       722 Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      |.|.|+..++..+.......++.++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus        34 y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~~   86 (93)
T d1tdqa1          34 ILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS   86 (93)
T ss_dssp             EEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             eEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEeCCCCcCCE
Confidence            88888888776555444444778899999999999999999999999997764

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-09  Score=93.58  Aligned_cols=80  Identities=21%  Similarity=0.387  Sum_probs=63.1

Q ss_pred             CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceE
Q psy8139         643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  722 (1101)
Q Consensus       643 ~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y  722 (1101)
                      +||.++.+..++.+++.|+|.+|.                                                  +++.+|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~--------------------------------------------------~~~~~Y   32 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKT--------------------------------------------------ETITGF   32 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCS--------------------------------------------------SCCCCE
T ss_pred             CcCCCCEEEEecCCEEEEEEECCC--------------------------------------------------CCCcee
Confidence            577888888788888887777542                                                  246788


Q ss_pred             EEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         723 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       723 ~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      .|.|...++..+..... ....+.++|.+|.|++.|.|+|.|.|..|.|++
T Consensus        33 ~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p   82 (90)
T d1fnha2          33 QVDAVPANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP   82 (90)
T ss_dssp             EEEEEESSSSCCEEEEC-CTTCSEEEEESCCTTCEEEEEEEEEETTEECCC
T ss_pred             EEEEEEccCCceEEEec-CCCccEEEeCCCCCCcEEEEEEEEEeCCCCcCC
Confidence            88888777656555443 367889999999999999999999999999765

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=6.1e-10  Score=94.20  Aligned_cols=80  Identities=24%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceE
Q psy8139         643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  722 (1101)
Q Consensus       643 ~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y  722 (1101)
                      ++|.++.+..++.+++.|+|++|.                                                  +.+.+|
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~--------------------------------------------------~~~~~Y   31 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKAS--------------------------------------------------GPIDHY   31 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCC--------------------------------------------------SCCSEE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCC--------------------------------------------------CCccce
Confidence            467778887777777777777542                                                  246788


Q ss_pred             EEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         723 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       723 ~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      .|.|+..++..+.....  ...++++|.+|.|++.|.|+|.|.|..|.|.++
T Consensus        32 ~v~~~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p~   81 (86)
T d1tdqa3          32 RITFTPSSGISSEVTVP--RDRTSYTLTDLEPGAEYIISITAERGRQQSLES   81 (86)
T ss_dssp             EEEEECSSSCCEEEEEE--SSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             EEEEecccccceEEEeC--CCccEEEECCCccccEEEEEEEEEcCCCEECCE
Confidence            88888776655444333  678899999999999999999999999997764

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=94.28  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceE
Q psy8139         643 LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY  722 (1101)
Q Consensus       643 ~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y  722 (1101)
                      ++|.++.+..++.+++.|+|.+|.                                                  +++.+|
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~--------------------------------------------------~~~~~y   32 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ--------------------------------------------------GQVSRY   32 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS--------------------------------------------------SCCSCE
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC--------------------------------------------------ccccce
Confidence            567788888888888888887653                                                  235678


Q ss_pred             EEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         723 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       723 ~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      .|.|.......+..........++++|.+|.|++.|.|+|.|.|..|.|.+.
T Consensus        33 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~p~   84 (94)
T d1j8ka_          33 RVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPL   84 (94)
T ss_dssp             EEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSSCCCCCE
T ss_pred             EEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCE
Confidence            8888777665555544444678999999999999999999999999986653

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.8e-10  Score=97.12  Aligned_cols=71  Identities=18%  Similarity=0.364  Sum_probs=54.2

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      .++.+++.|+|++|.    +++.+|.|.|...++..|.....  ++.++++|.+|.|++.|.|+|.|.|..|.|.++
T Consensus        11 ~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~s~~~   81 (102)
T d2cuha1          11 NLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETP--GSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPA   81 (102)
T ss_dssp             CCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEE--TTCSEEEECSCCSSSEEEEEEEEEETTEECCCE
T ss_pred             EeCCCEEEEEEEeee----ccceeeEEEEEeccccceeeeee--eeeeeEEEccEEeeEEEEEEEEEEeCCCCcCCE
Confidence            345555555555542    34788999998877766655443  678899999999999999999999999987654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.98  E-value=6.6e-10  Score=94.50  Aligned_cols=77  Identities=29%  Similarity=0.569  Sum_probs=66.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+++|.++..+ ++.+.    ...|.|.++...|.|.|+|.|.|..|.......|
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l   86 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV   86 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE----TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEe----eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            346788999999999999999999999999999654 44443    3469999999999999999999999988887777


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        87 ~V   88 (89)
T d1biha4          87 QV   88 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-09  Score=93.67  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=62.5

Q ss_pred             CCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEE
Q psy8139         644 PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYL  723 (1101)
Q Consensus       644 ~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~  723 (1101)
                      ||.++.+..++.+++.|+|++|.                                                  +.+.+|.
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~--------------------------------------------------~~~~~~~   31 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN--------------------------------------------------VQLTGYR   31 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS--------------------------------------------------SCCSEEE
T ss_pred             CCCCEEEEEecCCEEEEEEEccc--------------------------------------------------eeccceE
Confidence            56778888888888888877653                                                  1356777


Q ss_pred             EEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         724 VEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       724 V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      |+|....+..+..........++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus        32 i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s~~~   82 (90)
T d1fnha1          32 VRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPA   82 (90)
T ss_dssp             EEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCCCcCCE
Confidence            887776655554444444778899999999999999999999999998875

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.97  E-value=1e-09  Score=95.08  Aligned_cols=84  Identities=18%  Similarity=0.266  Sum_probs=69.1

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEE--EecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI--VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT  536 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~  536 (1101)
                      +.++.+..|+++.|.|.+.|.|.|.+.|+++|..+.......+  .......+|.|.++...|+|.|+|.|.|..|...+
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            5688899999999999999999999999999998875543332  22334458999999999999999999999998654


Q ss_pred             -EEEEee
Q psy8139         537 -KARLRL  542 (1101)
Q Consensus       537 -s~~l~V  542 (1101)
                       +..|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence             566766

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.8e-11  Score=102.13  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEEeC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~  530 (1101)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.++|++++..+.....  .........|.|.++...|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            47788888899999999999999999999999999999876543221  122345568999999999999 699999999


Q ss_pred             CCceEEEEEEee
Q psy8139         531 AGHSITKARLRL  542 (1101)
Q Consensus       531 ~g~~~~s~~l~V  542 (1101)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            999988887766

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.97  E-value=4.1e-10  Score=97.79  Aligned_cols=89  Identities=26%  Similarity=0.353  Sum_probs=70.6

Q ss_pred             CCCeeeecCceeEEccC---CeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALED---EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      .+|.|...|.+..+..|   ++++|.|.+.|.|.|.++|+++|..+...........++ ..|.|..+...|+|.|+|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            35788888888887665   689999999999999999999999987654433333333 47888889999999999999


Q ss_pred             EeCCCceEE-EEEE
Q psy8139         528 TNRAGHSIT-KARL  540 (1101)
Q Consensus       528 ~n~~g~~~~-s~~l  540 (1101)
                      .|..|...+ .+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            999997643 4444

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6e-10  Score=96.30  Aligned_cols=84  Identities=11%  Similarity=0.100  Sum_probs=64.7

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      +|++|.++++...+.+++.|+|++|.+ +                                              |. .+
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~-~----------------------------------------------~~-~~   34 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRE-T----------------------------------------------HL-ET   34 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSC-C----------------------------------------------SS-CC
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCccc-C----------------------------------------------CC-ce
Confidence            678888888888888888888876532 2                                              22 46


Q ss_pred             eEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCC
Q psy8139         721 GYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  772 (1101)
                      +|.|.|+..++..|..........+.+.+.+|.+++.|.|+|.|.|.+|.|.
T Consensus        35 ~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~s~   86 (95)
T d1bqua1          35 NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT   86 (95)
T ss_dssp             EEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEeCCcccc
Confidence            7888888777655555555446667888899999999999999999999865

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.7e-10  Score=99.01  Aligned_cols=93  Identities=17%  Similarity=0.312  Sum_probs=73.6

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccC---CCeEEEEECCEEeec---CCcEEEEe------cCCeeEEEEeecCCCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDGFEIFS---SRRQRIVT------DNDISTLIIHQAALMDE  520 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~~~~---~~~~~~~~------~~~~~~l~I~~l~~~d~  520 (1101)
                      |.|+..|.++.+..|++++|.|.+.|.|   .|.|.|++++.....   ..++....      ....+.|.|.++...|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5678889999999999999999999998   578999997643221   12222211      11245799999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeeccC
Q psy8139         521 GEIKCTATNRAGHSITKARLRLEAP  545 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~~~  545 (1101)
                      |.|+|.|.|..|....++.|.|..+
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEec
Confidence            9999999999999999999998753

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.96  E-value=1.1e-09  Score=92.77  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=43.7

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      .+.+|.|.|...+...+....  ..+.++++|.+|.|++.|.|+|.|+|..|.|+++
T Consensus        26 ~~~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~~~   80 (87)
T d1qr4a1          26 KFDRYRLTYVSPSGKKNEMEI--PVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPT   80 (87)
T ss_dssp             CCSEEEEEEECTTCCEEEEEE--CTTCSEEEEESCCSSCEEEEEEEEESSSCBCCCE
T ss_pred             CcceeEEEeecCCcceeEEeC--CCCcCEEEECCCCcCCEEEEEEEEEcCCCCccCE
Confidence            367888888877654333322  2677899999999999999999999999997764

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-09  Score=94.72  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .+.||.++.+..++.+++.|+|.+|...++                                             ...+.
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~---------------------------------------------~~~~~   36 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHY---------------------------------------------FERHL   36 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGG---------------------------------------------GTTCE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEcccccccc---------------------------------------------cccee
Confidence            467899999999999999999987653322                                             12356


Q ss_pred             eEEEEEEeCCCC-CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc-CCCCCCCCcEEec
Q psy8139         721 GYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT  783 (1101)
Q Consensus       721 ~Y~V~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~s~~~t~~  783 (1101)
                      .|.|.+...+.. .+........+.+.+.|.+|.|++.|.|+|+|.|..|. |.+|+++..++..
T Consensus        37 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~~~~g~~g~wS~wS~~v~~~  101 (104)
T d2b5ib2          37 EFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR  101 (104)
T ss_dssp             EEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEEESCCSSCCCCCCCCCEEEE
T ss_pred             EEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCcCCEEEE
Confidence            788888766542 22222233356788999999999999999999999995 7889888877764

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.7e-10  Score=99.01  Aligned_cols=89  Identities=26%  Similarity=0.428  Sum_probs=68.7

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      +.|++|..|..+   ..++.++|+|+|.+|..+||.++..|.++++......|..... ....+.+.|.+|.+++.|.|+
T Consensus         9 ~~P~~P~~~~~~---~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~r   84 (107)
T d2crma1           9 DKPGIPVKPSVK---GKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY-SGATREHLCDRLNPGCFYRLR   84 (107)
T ss_dssp             CCCCCCCCCEEE---EEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEE-CSSCSEEEECSCCTTSCEEEE
T ss_pred             CCCcCCCCCEEE---eeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEee-cCCccEEEEeccCCCCEEEEE
Confidence            445555555443   2467899999999998888889999999998766554433221 235578999999999999999


Q ss_pred             EEEEecCCCCCCC
Q psy8139         423 ITAENVVGFSEPG  435 (1101)
Q Consensus       423 c~A~n~~G~~~~s  435 (1101)
                      |.|.|..|.|.+|
T Consensus        85 V~A~n~~G~s~~S   97 (107)
T d2crma1          85 VYCISDGGQSAVS   97 (107)
T ss_dssp             EEEEETTEECCCC
T ss_pred             EEEECCCcCcCCC
Confidence            9999999988766

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-10  Score=97.61  Aligned_cols=75  Identities=20%  Similarity=0.163  Sum_probs=63.7

Q ss_pred             cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      .|.+.++.+|+.+.|.|.+.|.|.|.++|++++..+...             +.+.+++..|+|.|.|.|.|..|..+..
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------GESVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------TSCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-------------eeeeccccCCCCEEEEEEEcCCCEEEEE
Confidence            367888999999999999999999999999998766432             2245678899999999999999998888


Q ss_pred             EEEeeccC
Q psy8139         538 ARLRLEAP  545 (1101)
Q Consensus       538 ~~l~V~~~  545 (1101)
                      +.|.|..|
T Consensus        77 ~~l~V~~P   84 (84)
T d2oz4a3          77 VTVNVLSP   84 (84)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            88888654

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7e-10  Score=96.12  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE---CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK---DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      +|.|. .+.++.+..|+++.|.|.+.|.|.|.+.|++   ++..+.......+......++|.|.++...|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57786 5889999999999999999999988655432   2322322222333333445689999999999999999999


Q ss_pred             eCCCceEEE-EEEeec
Q psy8139         529 NRAGHSITK-ARLRLE  543 (1101)
Q Consensus       529 n~~g~~~~s-~~l~V~  543 (1101)
                      |..|...+. +.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            999987654 677763

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=1.7e-09  Score=92.81  Aligned_cols=57  Identities=19%  Similarity=0.164  Sum_probs=43.6

Q ss_pred             CcceEEEEEEeCCCCCceee--cccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ++.+|.|.|+..++..+...  .....+.++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus        27 ~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~   85 (92)
T d1tdqa2          27 EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA   85 (92)
T ss_dssp             CCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             cccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeCCCEecCE
Confidence            46778888887665444332  2233566889999999999999999999999997764

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=93.85  Aligned_cols=55  Identities=22%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             CcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         718 PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       718 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      ++.+|.|.|+..++..+....  ..+.++++|.+|.|++.|.|+|.|.|..|.|+++
T Consensus        28 ~~~~Y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~   82 (93)
T d2cuma1          28 RPAGYLLSFHTPGGQTQEILL--PGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPV   82 (93)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE--CSSCSEEEECSCCTTCEEEEEEEEEBTTBCCCCE
T ss_pred             ccccEEEEEEccccccEEEEE--CCCccEEEEeCccCCCEEEEEEEEEeCCCCCCCE
Confidence            477888888877654433332  3678899999999999999999999999997764

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.4e-10  Score=101.97  Aligned_cols=97  Identities=20%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      |+.+|.++.+..++.++|.|+|++|...+                                             .++.+.
T Consensus        14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~---------------------------------------------~~~~i~   48 (125)
T d1uena_          14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKS---------------------------------------------IRGHLQ   48 (125)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCCHHH---------------------------------------------HCSCEE
T ss_pred             CCCCCcccEEEEecCCEEEEEEeCccCCC---------------------------------------------CCccee
Confidence            44678899988888889999998764221                                             122345


Q ss_pred             eEEEEEEeCCCCCc-------eeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEe
Q psy8139         721 GYLVEHRRTGSPYW-------VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      +|.+.+.......+       ..........+.++|.+|.|++.|.|+|.|.|..|.|++|....+.|.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T d1uena_          49 GYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             eEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCCCCEEEECC
Confidence            55555543322111       011112256789999999999999999999999999988876654443

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-09  Score=91.53  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++..+....   .......+.|.|.++...|+|.|+|.|.|..|....++.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            4456789999999999999999999999876554322   2234556689999999999999999999999998888888


Q ss_pred             eec
Q psy8139         541 RLE  543 (1101)
Q Consensus       541 ~V~  543 (1101)
                      .|.
T Consensus        87 ~V~   89 (90)
T d1vcaa2          87 EIY   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=1.5e-09  Score=92.41  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=67.7

Q ss_pred             eecCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         456 IRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      ...|.+..+.+|+++.|.|.+. +.|.+.+.|++++..+.....  .. .++  .|+|.++...|+|.|+|.|.|..|..
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~-~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MD-FNG--ILTIRNVQPSDAGTYVCTGSNMFAMD   80 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EE-ETT--EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecccc--Ee-ece--EEEEecCCcccCEEEEEEEEECCCEE
Confidence            3456778899999999999997 678899999998876654432  12 222  79999999999999999999999998


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      ..++.|.|.
T Consensus        81 ~~~~~l~V~   89 (89)
T d1gl4b_          81 QGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            888888773

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-09  Score=93.23  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +..+.+..|+++.|.|.+. |.|.+.++|.+.+.++..     .......+.|+|.++...|+|.|+|.|.|..|....+
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s   84 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   84 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence            3457788999999999885 889999999987654421     2234456799999999999999999999999988888


Q ss_pred             EEEee
Q psy8139         538 ARLRL  542 (1101)
Q Consensus       538 ~~l~V  542 (1101)
                      +.|.|
T Consensus        85 ~~l~V   89 (90)
T d1gsma1          85 VQLLV   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.2e-09  Score=92.95  Aligned_cols=83  Identities=19%  Similarity=0.301  Sum_probs=70.2

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-----CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139         466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-----NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL  540 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-----~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l  540 (1101)
                      .+....+.|.+.|.|.|.+.|+++|..+..+....+...     ...+.|.|.++...|.|.|+|.|.|..|....++.|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            567778999999999999999999999987665544321     123579999999999999999999999999999999


Q ss_pred             eeccCCcc
Q psy8139         541 RLEAPPTI  548 (1101)
Q Consensus       541 ~V~~~p~~  548 (1101)
                      .|..+|.+
T Consensus        95 ~V~~~P~i  102 (103)
T d1wwbx_          95 HFMGWPGI  102 (103)
T ss_dssp             CCSCCCCC
T ss_pred             EEEeCCCC
Confidence            99888864

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=6.1e-10  Score=97.53  Aligned_cols=78  Identities=26%  Similarity=0.429  Sum_probs=64.4

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCcc---ccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH---MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~---~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ..+.++++|+|.+|..+||.+|++|.|+++..+...|......   ......+.|.+|.+++.|.|++.|.|..|.|.+|
T Consensus        12 ~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~g~~S   91 (101)
T d2haza1          12 EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS   91 (101)
T ss_dssp             EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEETTEECCCC
T ss_pred             EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEEeCCcCcCCC
Confidence            4567899999999988888899999999998877766554321   1334679999999999999999999999998776


Q ss_pred             C
Q psy8139         436 P  436 (1101)
Q Consensus       436 ~  436 (1101)
                      .
T Consensus        92 ~   92 (101)
T d2haza1          92 A   92 (101)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.3e-10  Score=100.05  Aligned_cols=98  Identities=28%  Similarity=0.430  Sum_probs=73.7

Q ss_pred             cCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc---eEEcC--ccccccceEEEcCccCC
Q psy8139         342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRAS--PHMVEDTELMVSGLEPG  416 (1101)
Q Consensus       342 ~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~--~~~~~~~~l~i~~L~p~  416 (1101)
                      ..+|+.|++|..+.+. .++.++++|+|.+|. +++.+|.+|.+++.......   |....  .......++.|.+|.|+
T Consensus         5 ~~p~~~P~~P~~~~~~-~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~   82 (111)
T d1wisa1           5 GVPPELPGPPTNLGIS-NIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPF   82 (111)
T ss_dssp             CCCCCCCCCCEEEEEE-SCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTT
T ss_pred             CCCCCCCcCCCCCEEE-EcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCC
Confidence            4566667777666555 778999999999884 66779999999997654332   22211  12244568999999999


Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcce
Q psy8139         417 WRYQFRITAENVVGFSEPGPLSEPL  441 (1101)
Q Consensus       417 d~y~y~c~A~n~~G~~~~s~~s~~v  441 (1101)
                      +.|.|+|.|.|..|.+.+|..+..+
T Consensus        83 t~Y~frV~A~N~~G~s~~S~~s~~~  107 (111)
T d1wisa1          83 TCYSFRMRQVNIVGTSPPSQPSRKI  107 (111)
T ss_dssp             SEECCCCEEECSSCBCCCCCCCCCE
T ss_pred             CEEEEEEEEEcCCcCCCCcCCCCCE
Confidence            9999999999999999888766544

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-09  Score=95.08  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=68.2

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC--CccCCCCCCC
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV--VGFSEPGPLS  777 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~--~G~g~~S~~s  777 (1101)
                      +++.+.|.|.+|....+..++.|.|+|+..++..+..........+++.|.+|.|++.|.|+|+|.+.  .|.|.+|++|
T Consensus        18 ~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar~~~~~~~G~WSeWS   97 (105)
T d1erna2          18 ESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWS   97 (105)
T ss_dssp             C-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEEECSSSCCBCCCCCC
T ss_pred             CCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEEECCCCCCCCCCCCC
Confidence            45679999999887878888999999999887665554444466789999999999999999999865  4678899999


Q ss_pred             CcEEec
Q psy8139         778 EPLTVT  783 (1101)
Q Consensus       778 ~~~t~~  783 (1101)
                      ..+++.
T Consensus        98 ~~v~~~  103 (105)
T d1erna2          98 EPVSLL  103 (105)
T ss_dssp             CCEEEE
T ss_pred             CCEEee
Confidence            888765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.93  E-value=9.3e-10  Score=95.39  Aligned_cols=81  Identities=22%  Similarity=0.399  Sum_probs=68.0

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+..|+++.|.|.+.|.|.|.+.|+++|.++..+.++. ........+|.|.++...|.|.|+|.|.|..|....++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            357789999999999999999999999999987544332 2233446789999999999999999999999998888887


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2e-09  Score=92.50  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             cceEEEEEEeCCCCCce-eecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCC
Q psy8139         719 VLGYLVEHRRTGSPYWV-RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  773 (1101)
Q Consensus       719 i~~Y~V~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~  773 (1101)
                      |.+|.|.|+..++..+. .......+.++++|.+|.|++.|.|+|.|.|..|.|.+
T Consensus        31 i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~p   86 (94)
T d1fnfa1          31 ITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP   86 (94)
T ss_dssp             CCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEETTEECCC
T ss_pred             eeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCEeCC
Confidence            78888888877654432 22223367789999999999999999999999998654

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-10  Score=104.69  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=65.5

Q ss_pred             CCCCCCcccCCCCCCCCceEEEEeeCCCCCC-----CCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEE
Q psy8139         685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-----GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  759 (1101)
Q Consensus       685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~-----~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~  759 (1101)
                      +||++|..+......+++++.|+|+||..+.     ++.|.+|.|.+   ++..+........+.+.++|.+|.+++.|.
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~---~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~   85 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA---KGQRVAEVIFPTADSTAVELVRLRSLEAKG   85 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES---SSSEEEEECCTTCSEEEEESHHHHHHTCSC
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEe---ecccceeeeeeccceeeeeccCCCCCcEEE
Confidence            5566666654444567889999999985532     23455555543   222333333333566788999999999999


Q ss_pred             EEEEEEcCCccCCCCCCCCcEEe
Q psy8139         760 FRITAENVVGFSEPGPLSEPLTV  782 (1101)
Q Consensus       760 ~~V~A~n~~G~g~~S~~s~~~t~  782 (1101)
                      |+|+|+|..|.|++|....+.+.
T Consensus        86 v~V~A~n~~G~s~~S~~v~i~t~  108 (117)
T d2cspa1          86 VTVRTLSAQGESVDSAVAAVPPE  108 (117)
T ss_dssp             BEEEEEESSCCCCCCSCBCCCHH
T ss_pred             EEEEEEcCCCcCCCCCCEEeeCC
Confidence            99999999999988876655443

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7.8e-10  Score=95.15  Aligned_cols=84  Identities=26%  Similarity=0.380  Sum_probs=65.9

Q ss_pred             CCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEec
Q psy8139         349 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV  428 (1101)
Q Consensus       349 ~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~  428 (1101)
                      ++|..+.+. ..+.++|+|+|.+|. +++.+|.+|.|+++..++. |...........++.|.+|.+++.|.|+|.|.|.
T Consensus         2 ~~P~~~~~~-~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           2 SAPKLEGQM-GEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCEEEEEE-CTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSC-CCCCEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCccCEeE-EcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcc-eeeeeeccCCceEEEEeccccceEEEEEEEEEcC
Confidence            344444333 778899999999995 7788999999999886654 4333333456678999999999999999999999


Q ss_pred             CCCCCCC
Q psy8139         429 VGFSEPG  435 (1101)
Q Consensus       429 ~G~~~~s  435 (1101)
                      .|.|.++
T Consensus        79 ~G~s~ps   85 (93)
T d2vkwa2          79 QGKSKAA   85 (93)
T ss_dssp             TEECCCE
T ss_pred             CCCcCCE
Confidence            9988764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=7.7e-10  Score=95.44  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=69.3

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .|.|...|.++.+.+|+++.|.|.+.|.|.| .+.|+++|..+........... ..++|.|.++...|+|.|+|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-DEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT-TSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecc-cceEEEEeccChhcCeEEEEEEEeC
Confidence            5778888999999999999999999999876 6999999998865543333322 2347999999999999999999999


Q ss_pred             CCceEE
Q psy8139         531 AGHSIT  536 (1101)
Q Consensus       531 ~g~~~~  536 (1101)
                      .|...+
T Consensus        81 ~G~~~s   86 (94)
T d1biha1          81 AGVASS   86 (94)
T ss_dssp             TEEEEC
T ss_pred             CCEEEE
Confidence            997543

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.9e-10  Score=100.28  Aligned_cols=104  Identities=22%  Similarity=0.351  Sum_probs=75.8

Q ss_pred             ccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCce-EEcCccccccceE
Q psy8139         330 GLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-VRASPHMVEDTEL  408 (1101)
Q Consensus       330 G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w-~~~~~~~~~~~~l  408 (1101)
                      |.+..+...+.+.+.+++|++|..+.+. .++.++|.|+|.+|..++| +|.+|.|+++..+...+ ...........++
T Consensus         3 G~G~pss~~v~~~T~~~~P~~P~~~~~~-~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~   80 (117)
T d1wfoa1           3 GDGSPSHPPILERTLDDVPGPPMGILFP-EVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSARQY   80 (117)
T ss_dssp             CCCCCCCCCSCCCCSCCCCCCCCCCEEE-EECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCCEE
T ss_pred             cCCCCCCCCEEEECCCCCCcCCCCcEEE-EecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceEEE
Confidence            4443333345555666667777766555 7789999999999976655 79999999977655432 2222223456789


Q ss_pred             EEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         409 MVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       409 ~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .|.+|.|++.|.|++.|.|..|.+.++
T Consensus        81 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S  107 (117)
T d1wfoa1          81 TATGLKPESVYLFRITAQTRKGWGEAA  107 (117)
T ss_dssp             EEESCCSSSEEEEEEEEECSSCEEEEE
T ss_pred             EECCCCCCCEEEEEEEEECCCcCCCCc
Confidence            999999999999999999999987654

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-09  Score=95.61  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecC-CCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG-SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~-~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      .|..|.++    ..+.++|+|+|.+|..+++ .+.+|.|+|+... ...|...........+++|.+|.|++.|.|+|+|
T Consensus         9 ~P~~p~~~----~~~~~~v~l~W~pp~~~~~-~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra   83 (105)
T d2d9qb2           9 MDPSPEAA----PPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRC   83 (105)
T ss_dssp             CCC-----------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEE
T ss_pred             CCCCCEee----cCCCCeEEEEEcCCCCCCc-eeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEE
Confidence            44445442    6779999999999875555 7889999998654 4456665544556678999999999999999999


Q ss_pred             EecCCCCCCCCCCcceEEE
Q psy8139         426 ENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       426 ~n~~G~~~~s~~s~~vtv~  444 (1101)
                      .|..|.+.+|.+|..+++.
T Consensus        84 ~n~~g~G~~S~wS~~~~~~  102 (105)
T d2d9qb2          84 IRWPLPGHWSDWSPSLELR  102 (105)
T ss_dssp             EECSSCCCCCCCCCCEEEC
T ss_pred             EeCCCCCCCcCCCCCEEEe
Confidence            9999999999888877764

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-09  Score=94.00  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139         717 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  783 (1101)
Q Consensus       717 ~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~  783 (1101)
                      ..+..|.+.++..+...|..+..  ...+.++|.+|.|++.|.|+|+|.|. |.|.+|++|..+..+
T Consensus        41 ~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~t~Y~~rVrA~~~-~~g~wS~WS~~~~~t  104 (109)
T d1uc6a_          41 SFPLKFFLRYRPLILDQWQHVEL--SNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHAT  104 (109)
T ss_dssp             TTTBCEEEEEEESSSCCCCCEEE--SSCSEEEETTCCSSSCEEEEEECCBS-SSCCCCCCCEEEEEC
T ss_pred             eeEEEEEEEEeecCCCceEEecc--CCceeEEeCCCCCCCEEEEEEEEEEC-CCCCcCCCCCCEEeE
Confidence            34678999999998888877665  67789999999999999999999875 678889888877664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.2e-10  Score=99.40  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccC---CCeEEEEECCEEee---cCCcEEEEe------cCCeeEEEEeecCCCCCEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDGFEIF---SSRRQRIVT------DNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~~~---~~~~~~~~~------~~~~~~l~I~~l~~~d~g~  522 (1101)
                      |+..|.++.+..|++++|.|.+.|.|   .|.|.|++++....   ....+.+..      ......|.|.++...|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            45678889999999999999999998   57999999864321   122222211      1123579999999999999


Q ss_pred             EEEEEEeCCCceEEEEEEeeccCCc
Q psy8139         523 IKCTATNRAGHSITKARLRLEAPPT  547 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~~~p~  547 (1101)
                      |+|.|.|..|....++.|.|..++.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999998889999976653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-09  Score=100.67  Aligned_cols=87  Identities=24%  Similarity=0.330  Sum_probs=72.2

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeec-----------------------------CCcEEEEecCCe
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS-----------------------------SRRQRIVTDNDI  507 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~-----------------------------~~~~~~~~~~~~  507 (1101)
                      ..|.++.+..|++++|.|.+.|.|.|.+.|++++..+..                             ..++.+....+.
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   93 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR   93 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCE
Confidence            346788899999999999999999999999987644321                             123455556667


Q ss_pred             eEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       508 ~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      +.|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            799999999999999999999999999888888774

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2e-09  Score=95.08  Aligned_cols=93  Identities=12%  Similarity=0.085  Sum_probs=72.0

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEec-CCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~-~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      .|..|.++    ..+.+++.|+|.+|..+++ .+.+|.|+|+.. +...|..+........+++|.+|.+++.|.|+|+|
T Consensus        10 ~P~~p~~~----~~~~~~i~v~W~pp~~~~~-~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra   84 (106)
T d1cd9b2          10 LDIGPDVV----SHQPGCLWLSWKPWKPSEY-MEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRC   84 (106)
T ss_dssp             CCC-----------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEE
T ss_pred             CCCCCeEe----cCCCCEEEEEEcCcccCCc-cceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEE
Confidence            44445442    6678999999999865544 788999999864 45678877665566788999999999999999999


Q ss_pred             EecCCCCCCCCCCcceEEE
Q psy8139         426 ENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       426 ~n~~G~~~~s~~s~~vtv~  444 (1101)
                      .|..|.+.+|.+|..+++.
T Consensus        85 ~~~~g~g~wS~wS~~~~~~  103 (106)
T d1cd9b2          85 IRSSLPGFWSPWSPGLQLR  103 (106)
T ss_dssp             EESSSCCCCCCCCCCEEEC
T ss_pred             EeCCCCCCCcCCCCCeEec
Confidence            9999999999988888764

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=1.1e-09  Score=97.06  Aligned_cols=92  Identities=24%  Similarity=0.459  Sum_probs=67.4

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-CceEEcCc-----------cccccceEEEcCcc
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASP-----------HMVEDTELMVSGLE  414 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~-----------~~~~~~~l~i~~L~  414 (1101)
                      ||+.|.+.    .++.++|+|+|.+|. ++|.+|++|.|+++..+. ..|.....           ......+++|.+|.
T Consensus         2 PP~~p~v~----~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   76 (107)
T d2ic2a1           2 PPTPPNVT----RLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK   76 (107)
T ss_dssp             CCCCCEEE----ECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred             cCcCCEEE----EEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCc
Confidence            56677663    678999999999995 677899999999976543 34543321           11234579999999


Q ss_pred             CCccEEEEEEEEecCCCCCCCCCCcceEE
Q psy8139         415 PGWRYQFRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       415 p~d~y~y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      |++.|.|+|.|.|..|.+.+|..|..+.+
T Consensus        77 p~t~Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          77 PQHTYRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             SSEEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             CCcEEEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            99999999999999999988877666554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7e-09  Score=91.24  Aligned_cols=82  Identities=16%  Similarity=0.252  Sum_probs=67.4

Q ss_pred             cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEe--cC--CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139         466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT--DN--DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~--~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      .+....|.|.+.|.|.|.+.|+++|..+..........  ..  ..+.|.|.++...|+|.|+|.|.|..|....++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            34456688899999999999999999987766554332  22  235799999999999999999999999999999999


Q ss_pred             eccCCc
Q psy8139         542 LEAPPT  547 (1101)
Q Consensus       542 V~~~p~  547 (1101)
                      |..+|.
T Consensus        96 V~~~P~  101 (105)
T d1wwca_          96 FLKEPF  101 (105)
T ss_dssp             CSCCCC
T ss_pred             EEeCCC
Confidence            988774

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.9e-09  Score=90.63  Aligned_cols=83  Identities=33%  Similarity=0.482  Sum_probs=68.9

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ...+.++.+..|+++.|.|.+ +.|.+.+.|++++..+..+.  .+.+...++...|.|.++.+.|+|.|+|.|.|    
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----   78 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   78 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             EcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----
Confidence            445678899999999999998 46888999999999887553  46677777888999999999999999999855    


Q ss_pred             eEEEEEEeec
Q psy8139         534 SITKARLRLE  543 (1101)
Q Consensus       534 ~~~s~~l~V~  543 (1101)
                      ...++.|.|.
T Consensus        79 ~~~~a~l~V~   88 (90)
T d1x44a1          79 GQSSAKLSVD   88 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             ceEEEEEEEE
Confidence            4556777765

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-10  Score=102.20  Aligned_cols=85  Identities=21%  Similarity=0.310  Sum_probs=65.3

Q ss_pred             CCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeec--ccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139         694 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS--PHMVEDTELMVSGLEPGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       694 ~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  771 (1101)
                      .....++++++.|+|+||..+ ++.|.+|.|+|+..+...+....  ........+.+.+|.|++ |.|+|+|.|..|.|
T Consensus        11 v~~~~~~~~sv~l~W~pP~~~-ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~A~n~~G~g   88 (102)
T d2dtge1          11 VTHEIFENNVVHLMWQEPKEP-NGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNG   88 (102)
T ss_dssp             CCCCSSSSSCCCCCCCCCCSC-SSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCCEEETTBCC
T ss_pred             CEEEEECCCEEEEEEEeCCCC-cceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEEEEcCCccC
Confidence            345567889999999998755 45799999999977654443321  222556778999999975 99999999999999


Q ss_pred             CCCCCCCcE
Q psy8139         772 EPGPLSEPL  780 (1101)
Q Consensus       772 ~~S~~s~~~  780 (1101)
                      ++|++..+.
T Consensus        89 ~~S~~v~f~   97 (102)
T d2dtge1          89 SWTEPTYFY   97 (102)
T ss_dssp             CCCCCCEEC
T ss_pred             CCCCCEEEE
Confidence            988765544

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=4.3e-09  Score=90.81  Aligned_cols=87  Identities=17%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC-CceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      ++.|..+.+. .++.++|.|+|.+|...++..|.+|.|.++..+. ..|...........++.|.||.|++.|.|++.|.
T Consensus         7 ~~~P~~~~v~-~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   85 (95)
T d2ibga1           7 MPVPELLEIE-EYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF   85 (95)
T ss_dssp             CCCCEECCCB-CCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCcCeEEE-EeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEE
Confidence            3345555554 7889999999998877777789999999987654 3455443333456789999999999999999999


Q ss_pred             ecCCCCCCC
Q psy8139         427 NVVGFSEPG  435 (1101)
Q Consensus       427 n~~G~~~~s  435 (1101)
                      |..|.+.+|
T Consensus        86 n~~G~s~~S   94 (95)
T d2ibga1          86 SAASASEFS   94 (95)
T ss_dssp             CSSCBCCCC
T ss_pred             eCCccCCCC
Confidence            999988765

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.1e-09  Score=99.29  Aligned_cols=99  Identities=16%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             eeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEE----ecCCCceEEcCccccccceEEEcC
Q psy8139         337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR----RTGSPYWVRASPHMVEDTELMVSG  412 (1101)
Q Consensus       337 ~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~----~~~~~~w~~~~~~~~~~~~l~i~~  412 (1101)
                      .......+|.+|.+|.+    ..++.++|+|+|.+|..+|+..+.+|.|+|+    ......|.....  ...++++|.+
T Consensus         8 ~~~~~~~pp~~P~~p~v----~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~--~~~~~~~v~~   81 (120)
T d1wfua_           8 MEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEG   81 (120)
T ss_dssp             CCCTTCCCCCCCCCCBC----CCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEES
T ss_pred             CCEecccCCCcCCCCEE----eEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeecc--ccccEEeCCC
Confidence            33344567888888877    3788999999999998888878877766664    333445655432  3457899999


Q ss_pred             ccCCccEEEEEEEEecCCCCCCCCCCcceEEE
Q psy8139         413 LEPGWRYQFRITAENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       413 L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~  444 (1101)
                      |.|++.|.|+|.|.|..|.+.+|   ..+.+.
T Consensus        82 L~p~t~Y~frV~A~n~~G~s~~S---~~~~~~  110 (120)
T d1wfua_          82 LEPRTLYKFRLKVTSPSGEYEYS---PVVSVA  110 (120)
T ss_dssp             CCTTCEEEEEEEEECSSSCEEEC---CCEEEE
T ss_pred             CCCCcEeeEEEEEEeCCcEeCCC---CCEEEE
Confidence            99999999999999999987765   344443

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1.7e-09  Score=94.38  Aligned_cols=82  Identities=27%  Similarity=0.457  Sum_probs=67.4

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc--eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+..|+++.|.|.+.|.|.|.+.|+++|..+.....  .........+.|.|.++...|.|.|+|.|.|..|.......|
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   95 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL   95 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            345699999999999999999999999998865422  222334456789999999999999999999999998888888


Q ss_pred             EEec
Q psy8139         637 TVTD  640 (1101)
Q Consensus       637 ~v~~  640 (1101)
                      .|..
T Consensus        96 ~V~~   99 (100)
T d1qz1a3          96 KVFA   99 (100)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8763

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.6e-09  Score=93.90  Aligned_cols=86  Identities=24%  Similarity=0.404  Sum_probs=70.7

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      |++|.+|.+.    .++.++|+|+|.+|..+++..+..|.++++..+...|.... ......+++|.+|.+++.|.|+|.
T Consensus         1 P~~P~~~~v~----~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~v~~L~p~t~Y~~rV~   75 (96)
T d1x5xa1           1 PSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPK-YDGEDLAYTVKNLRRSTKYKFKVI   75 (96)
T ss_dssp             CCCCCCCEEE----EECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEE-EEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CccCCCCEEE----EecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEe-ecCCCCEEEECCCCCCCEEEEEEE
Confidence            6778888774    67899999999999888888999999999876665554432 224567899999999999999999


Q ss_pred             EEecCCCCCCC
Q psy8139         425 AENVVGFSEPG  435 (1101)
Q Consensus       425 A~n~~G~~~~s  435 (1101)
                      |.|..|.+.+|
T Consensus        76 A~n~~G~s~~S   86 (96)
T d1x5xa1          76 AYNSEGKSNPS   86 (96)
T ss_dssp             EECSSCEEEEC
T ss_pred             EEcCCcEeCCC
Confidence            99999987665

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.1e-09  Score=92.92  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             eeEEccCCeE---EEEEEEeccCCCeEEEEECCEEeecCCcEEEEecC-------CeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         461 DTTALEDEKV---EFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN-------DISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       461 ~~~v~~g~~v---~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-------~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      ++.+..|...   .+.|.+.|.|.|.+.|+++|..+............       ..+.|.|.++...|+|.|+|.|.|.
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            3444444444   45568999999999999999998766655443321       2357999999999999999999999


Q ss_pred             CCceEEEEEEeeccCCc
Q psy8139         531 AGHSITKARLRLEAPPT  547 (1101)
Q Consensus       531 ~g~~~~s~~l~V~~~p~  547 (1101)
                      .|....++.|.|..+|.
T Consensus        86 ~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          86 FGQASASIMAAFMDNPF  102 (107)
T ss_dssp             TEEEEEEEEECCCSCTT
T ss_pred             CCEEEEEEEEEEEcCCC
Confidence            99999999999998884

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=8.7e-09  Score=89.12  Aligned_cols=88  Identities=26%  Similarity=0.374  Sum_probs=67.9

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCC-CeEEEEE-CCEEeec-CCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPT-PKVSWYK-DGFEIFS-SRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~g~~~~~-~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ...|.+..+..|+++.|.|.+.|.|. +.+.|++ +|..+.. ..++.+. ...+.++|.|.++...|+|.|+|.|.|..
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCC
Confidence            34567788999999999999999985 7999998 4555443 3445543 34566789999999999999999999999


Q ss_pred             CceE-EEEEEeec
Q psy8139         532 GHSI-TKARLRLE  543 (1101)
Q Consensus       532 g~~~-~s~~l~V~  543 (1101)
                      |... .++.|.|.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            8753 35666653

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.2e-09  Score=90.49  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      |++|.+|.+.    .++.+++.|+|.+|..+ +.++.+|.|++...+...|....   ....+++|.+|.+++.|.|+|.
T Consensus         1 P~~P~~~~v~----~~s~~si~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~   72 (93)
T d1x4xa1           1 PDQCKPPQVT----CRSATCAQVNWEVPLSN-GTDVTEYRLEWGGVEGSMQICYC---GPGLSYEIKGLSPATTYYCRVQ   72 (93)
T ss_dssp             CCCCCCCCCE----EEETTEEEEECCCCSCS-SSCCCEEEEEEESSTTSCCEEEE---ESCSEEEEESCCSSCEEEEEEE
T ss_pred             CcCCCCCEEE----EeCCCeEEEEEEecccC-CCeeEEEEEEEccCCCcceEeec---CCccEEEEcccceeeEEEEEEE
Confidence            6778888773    77899999999998654 55899999999887766665432   3567899999999999999999


Q ss_pred             EEecCCCCCCC
Q psy8139         425 AENVVGFSEPG  435 (1101)
Q Consensus       425 A~n~~G~~~~s  435 (1101)
                      |.|..|.+.+|
T Consensus        73 A~n~~G~s~~S   83 (93)
T d1x4xa1          73 ALSVVGAGPFS   83 (93)
T ss_dssp             EECSSCCCCBC
T ss_pred             EEECCcCcCCC
Confidence            99999988765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.2e-09  Score=90.00  Aligned_cols=83  Identities=22%  Similarity=0.360  Sum_probs=68.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec--ceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD--RYLNLRISDARRADRGEYQAHGVNSLGED-VAS  633 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~--~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s  633 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++..+.......+....  ....|.|.++++.|.|.|+|.|.|..|.. +..
T Consensus         5 ~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~   84 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   84 (91)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence            457888999999999999999999999999999876655444332  34679999999999999999999999975 456


Q ss_pred             EEEEEe
Q psy8139         634 FLVTVT  639 (1101)
Q Consensus       634 ~~l~v~  639 (1101)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1rhfa1          85 VWLTVE   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777765

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3e-09  Score=98.11  Aligned_cols=96  Identities=27%  Similarity=0.465  Sum_probs=76.9

Q ss_pred             cCCccccC--CCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC-----------------------------C
Q psy8139         544 APPTIRLP--KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS-----------------------------G  592 (1101)
Q Consensus       544 ~~p~~~~~--~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-----------------------------~  592 (1101)
                      .||.+...  ...++.+.+..|+.+.|.|.+.|.|.|.+.|++++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            46666432  2445677899999999999999999999999987655431                             1


Q ss_pred             CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       593 ~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      .++.+........|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            23455556667889999999999999999999999998888888875

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.5e-09  Score=93.61  Aligned_cols=93  Identities=24%  Similarity=0.355  Sum_probs=72.3

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      |++|..+.+. .++.++|+|+|.+|..++++.+.+|.|.++..+...|...........+++|.+|.|++.|.|++.|.|
T Consensus        11 P~~P~~l~~~-~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~n   89 (107)
T d1x5fa1          11 PSAPRDVVAS-LVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQN   89 (107)
T ss_dssp             CCCCEEEEEE-EECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEEC
T ss_pred             CcCCCccEEE-EecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEEe
Confidence            3444444433 778999999999987777778999999998877666655544455678999999999999999999999


Q ss_pred             cCCCCCCCCCCcceEEE
Q psy8139         428 VVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       428 ~~G~~~~s~~s~~vtv~  444 (1101)
                      ..|.+.+|   ..+.+.
T Consensus        90 ~~G~g~~S---~~i~v~  103 (107)
T d1x5fa1          90 KHGSGESS---APLRVE  103 (107)
T ss_dssp             SSCEEEEC---CCEEEE
T ss_pred             CCCCcCCC---CCEEEE
Confidence            99987654   445554

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=96.17  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             ccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         341 IKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       341 v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      +.+..+.|++|..+.+. .++.+++.|+|.+|...+| .|.+|.|+++..+...+...........++.|.+|.|++.|.
T Consensus         4 v~T~e~vP~~p~~l~~~-~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   81 (106)
T d1wfna1           4 VRTHEDVPGPVGHLSFS-EILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYT   81 (106)
T ss_dssp             CCSSCCSCCCCSCCEEE-SCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEE
T ss_pred             EEcCCCCCcCCCCcEEE-EecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEE
Confidence            34444555555555444 7889999999999876665 799999999876544322222223345689999999999999


Q ss_pred             EEEEEEecCCCCCCC
Q psy8139         421 FRITAENVVGFSEPG  435 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s  435 (1101)
                      |+|.|.|..|.+.++
T Consensus        82 ~~V~A~n~~G~g~~s   96 (106)
T d1wfna1          82 IEVAAMTSKGQGQVS   96 (106)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             EEEEEECCCCCcCCc
Confidence            999999999987654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.86  E-value=2.4e-09  Score=91.42  Aligned_cols=78  Identities=21%  Similarity=0.271  Sum_probs=64.4

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ..+.+..|+++.|.|.+.|.|.|.+.|++++......      .....++|.|.++...|.|.|+|.|.|..|.....+.
T Consensus        13 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1cs6a3          13 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR   86 (91)
T ss_dssp             SEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE------eeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEE
Confidence            3457889999999999999999999999976544321      1122567999999999999999999999999888888


Q ss_pred             EEEe
Q psy8139         636 VTVT  639 (1101)
Q Consensus       636 l~v~  639 (1101)
                      |.|.
T Consensus        87 l~V~   90 (91)
T d1cs6a3          87 IIIH   90 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.4e-09  Score=91.44  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=69.2

Q ss_pred             eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe-----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      .+....+.|.+.|.|.|.+.|+++|..+..+....+..     ....+.|.|.+++..|.|.|+|.|.|..|..+.+..|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            46677899999999999999999999998766554332     1224679999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy8139         637 TVTDRPL  643 (1101)
Q Consensus       637 ~v~~~P~  643 (1101)
                      .|.+.|+
T Consensus        95 ~V~~~P~  101 (103)
T d1wwbx_          95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            9888775

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7e-09  Score=93.00  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             CCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcc
Q psy8139         641 RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVL  720 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~  720 (1101)
                      .|+||.++.+. .+++++.|+|.+|...++..                                         ..+..+.
T Consensus         5 kP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~-----------------------------------------~~~~~~~   42 (114)
T d2gysa2           5 QPPEPRDLQIS-TDQDHFLLTWSVALGSPQSH-----------------------------------------WLSPGDL   42 (114)
T ss_dssp             CCCCCEEEEEE-EETTEEEEEEECCC-----C-----------------------------------------CSCGGGE
T ss_pred             cCCcCCCeEEE-EeCCEEEEECCCCccccccc-----------------------------------------ceeeeEE
Confidence            58899999875 56678999999876443311                                         1123467


Q ss_pred             eEEEEEEeCCCCCceeec-ccccCccEEEEcCCCCCceEEEEEEEEcCCcc---CCCCCCCCcEEec
Q psy8139         721 GYLVEHRRTGSPYWVRAS-PHMVEDTELMVSGLEPGWRYQFRITAENVVGF---SEPGPLSEPLTVT  783 (1101)
Q Consensus       721 ~Y~V~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~---g~~S~~s~~~t~~  783 (1101)
                      .|.|.|+..+...|.... ......+.+.+.+|.|++.|.|+|+|.|..|.   |.||++|..++..
T Consensus        43 ~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~  109 (114)
T d2gysa2          43 EFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD  109 (114)
T ss_dssp             EEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEE
T ss_pred             EEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEEEEEEEEeCCCCCCCCCccCCcCCEeee
Confidence            899999988765443322 22245568899999999999999999999987   4578888888765

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.5e-09  Score=92.72  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             CCCCCeeeecCceeEEccCCeEEEEEEEeccCC-CeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT-PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       449 ~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      |..+|.+...+..+.+.+|+++.|.|.+.+.|. +.|+|++++..+....+.... .++  +|.|.++..+|+|.|+|.|
T Consensus         3 P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-MGR--RLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             SSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-ESS--EEEECSCCGGGCEEEEEES
T ss_pred             CCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec-CCC--EEEECCCChhcCEEEEEEE
Confidence            456788888889999999999999999998765 589999999888665544333 333  8999999999999999999


Q ss_pred             EeCCC
Q psy8139         528 TNRAG  532 (1101)
Q Consensus       528 ~n~~g  532 (1101)
                      .|..+
T Consensus        80 ~n~~~   84 (93)
T d1n26a1          80 AGRPA   84 (93)
T ss_dssp             SSSCS
T ss_pred             CCccc
Confidence            76543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.4e-09  Score=93.18  Aligned_cols=91  Identities=16%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEECCEEeec---CCcEEEEecC--CeeEEEEeecCCCCCEEEEEE
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFS---SRRQRIVTDN--DISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~~---~~~~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      |.|+..+++..+..|+++.|.|.+.|.| .|.|+|++++..+..   .........+  +...|.|.++...|+|.|+|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            3455677888999999999999999998 589999997754431   2222222222  234699999999999999999


Q ss_pred             EEeCCCceEE-EEEEeec
Q psy8139         527 ATNRAGHSIT-KARLRLE  543 (1101)
Q Consensus       527 a~n~~g~~~~-s~~l~V~  543 (1101)
                      |.|..|...+ ++.|.|.
T Consensus        84 A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEETTEEEECCCEEEEEE
T ss_pred             EEcCCCeEEEEEEEEEEE
Confidence            9999997654 5666664

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.9e-09  Score=95.07  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=66.8

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      +++.+|++|..+.+. ..+.++|+|+|.+|. +++.+|.+|.|+++......+.... .......+.+.+|.|++.|.|+
T Consensus         6 T~~~~P~~P~~~~~~-~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~fr   82 (105)
T d1x3da1           6 TLSCEPDIPNPPRIA-NRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQC-YMGSQKQFKITKLSPAMGCKFR   82 (105)
T ss_dssp             CCCSCCCCCCCCEEE-EEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEE-EEESCSEEEEESCCTTCEEEEE
T ss_pred             CCCCCCcCCCCCEEE-EccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEE-ecCCccEEEecCCcCCcEEEEE
Confidence            344444444444333 788999999999995 5667999999999865554433222 2345678999999999999999


Q ss_pred             EEEEecCCCCCCC
Q psy8139         423 ITAENVVGFSEPG  435 (1101)
Q Consensus       423 c~A~n~~G~~~~s  435 (1101)
                      |.|.|..|.|.+|
T Consensus        83 V~A~N~~G~s~~S   95 (105)
T d1x3da1          83 LSARNDYGTSGFS   95 (105)
T ss_dssp             CCEEESSCBCCCC
T ss_pred             EEEECCCeEcCCC
Confidence            9999999988765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.81  E-value=8.6e-09  Score=87.03  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             eeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EE
Q psy8139         461 DTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KA  538 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~  538 (1101)
                      ...+.+|++++|.|.+.+ .|.+.+.|+++|..+...        .....|.|.++..+|+|.|.|.|.|..|...+ ..
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            456889999999999965 466689999999876432        22338999999999999999999999887543 56


Q ss_pred             EEeeccC
Q psy8139         539 RLRLEAP  545 (1101)
Q Consensus       539 ~l~V~~~  545 (1101)
                      .|.|+.|
T Consensus        81 ~l~V~~P   87 (88)
T d2fcba2          81 TITVQAP   87 (88)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            7777664

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.80  E-value=6.1e-09  Score=90.06  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=68.1

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEE--EeecceEEEEEccCCCCCCeEEEEEEEeCCCCce-e
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI--THTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-A  632 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~-~  632 (1101)
                      ..+.+..|+++.|.|.+.|.|.+.+.|+++|..+.......+  .......+|.|.+++..|.|.|+|.|.|..|... .
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   90 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH   90 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred             CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence            456888999999999999999999999999999875544333  2334456899999999999999999999999864 4


Q ss_pred             EEEEEE
Q psy8139         633 SFLVTV  638 (1101)
Q Consensus       633 s~~l~v  638 (1101)
                      +..|.|
T Consensus        91 s~~L~V   96 (97)
T d1biha3          91 SLKLTV   96 (97)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666766

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.9e-10  Score=100.59  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=59.2

Q ss_pred             CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCC--------------cee---------ecccccCccEEEEcCCC
Q psy8139         697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY--------------WVR---------ASPHMVEDTELMVSGLE  753 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~--------------~~~---------~~~~~~~~~~~~i~~L~  753 (1101)
                      ...++++|.|+|+||..++++.|.+|.|.|+..+...              |..         ........++++|.+|.
T Consensus        11 ~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~   90 (125)
T d2dtge3          11 IRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLK   90 (125)
T ss_dssp             EEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCC
T ss_pred             EEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCEEEECCCc
Confidence            3578899999999998777788999999998764422              211         11222466889999999


Q ss_pred             CCceEEEEEEEEcCCccC
Q psy8139         754 PGWRYQFRITAENVVGFS  771 (1101)
Q Consensus       754 p~t~Y~~~V~A~n~~G~g  771 (1101)
                      |+|.|.|+|.|+|..|.+
T Consensus        91 p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          91 PWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             SSCBCCBEEEECCCCCSS
T ss_pred             cCCEEEEEEEEEeCCCcc
Confidence            999999999999999964

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.2e-08  Score=86.84  Aligned_cols=79  Identities=15%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT  637 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~  637 (1101)
                      ..+..|+.+.|.|.+.|.|.|.+.|.+++..+..+.   .......+.|.|.++...|.|.|+|.|.|..|..+.+..|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            356789999999999999999999999876654432   22334577899999999999999999999999988888887


Q ss_pred             Ee
Q psy8139         638 VT  639 (1101)
Q Consensus       638 v~  639 (1101)
                      |.
T Consensus        88 V~   89 (90)
T d1vcaa2          88 IY   89 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.8e-09  Score=91.51  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      |++|..+.+. .++.+++.|+|.+|...+ .+|.+|.|.+...+...|....   ....++.|.+|.|++.|.|+|.|.|
T Consensus        11 P~~P~~l~v~-~~s~~si~l~W~~P~~~~-g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n   85 (103)
T d1x5ga1          11 PGPAPNLRAY-AASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDVD---VSSHSYTINGLKKYTEYSFRVVAYN   85 (103)
T ss_dssp             CCCCSSCEEE-EEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCEE---ECSSEEEECSCCTTCEEEEEEEEEC
T ss_pred             cccCCCcEEE-EccCCEEEEEEECCcCCC-ccEEEEEEEEEeCCCceeEEEe---ccccEEecCCCCCCCEEEEEEEEEc
Confidence            3444444333 778999999999986554 4899999999987776654332   3557899999999999999999999


Q ss_pred             cCCCCCCC
Q psy8139         428 VVGFSEPG  435 (1101)
Q Consensus       428 ~~G~~~~s  435 (1101)
                      ..|.|.+|
T Consensus        86 ~~G~g~~S   93 (103)
T d1x5ga1          86 KHGPGVST   93 (103)
T ss_dssp             SSCCCCBC
T ss_pred             CCcCcCCC
Confidence            99987665

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-08  Score=88.82  Aligned_cols=92  Identities=25%  Similarity=0.425  Sum_probs=72.1

Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecC------CCCceEEEeecceEEEEEccCC-CCCC
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLT------SGGRYEITHTDRYLNLRISDAR-RADR  616 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~------~~~~~~~~~~~~~~sl~i~~l~-~~~~  616 (1101)
                      ||.+...+   ....+.+|+.+.|.|.+.|.|.+ .+.|++++....      ...++.+...+....|.|.++. ..|.
T Consensus         2 PP~i~~~~---~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~   78 (101)
T d3b5ha1           2 PPRVKAVK---SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP   78 (101)
T ss_dssp             SCCCEESC---SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             CceEEEcC---CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence            56555443   24578899999999999999977 799998654332      2345667777778899999998 5799


Q ss_pred             eEEEEEEEeCCCCceeEEEEEEe
Q psy8139         617 GEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       617 y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      |.|+|.|.|..|..+....|.|.
T Consensus        79 G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          79 GQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999998888888763

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.3e-09  Score=95.18  Aligned_cols=101  Identities=21%  Similarity=0.374  Sum_probs=73.7

Q ss_pred             eccCCCCCCC-CCcccCCCCCCCCCeeEEEEeCCC-CCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCc
Q psy8139         340 VIKKPPGPPG-KPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGW  417 (1101)
Q Consensus       340 ~v~~~p~~P~-~p~~l~~~~~~~~~sv~l~W~~p~-~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d  417 (1101)
                      .+.+....|. +|..+.+. ..+.+++.|+|.+|. ...+..|.+|.|+++..+...+...........++.|.+|.|++
T Consensus         3 ~v~T~~~~P~~~P~~v~~~-~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   81 (119)
T d1x5ha1           3 AVRTLSDVPSAAPQNLSLE-VRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGT   81 (119)
T ss_dssp             CCCCCCSSCCCCCEEEEEE-CCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSC
T ss_pred             EEEcCCCCCCCCCcCeEEE-EecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCC
Confidence            3455555553 45665554 778899999999874 22334799999999887666555544444566789999999999


Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEE
Q psy8139         418 RYQFRITAENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       418 ~y~y~c~A~n~~G~~~~s~~s~~vtv~  444 (1101)
                      .|.|++.|.|..|.|.+|   ..+.+.
T Consensus        82 ~Y~~~V~A~n~~G~G~~S---~~~~~~  105 (119)
T d1x5ha1          82 EYNFRVAALTINGTGPAT---DWLSAE  105 (119)
T ss_dssp             EEEEECEEEETTEEEEEC---CCEEEE
T ss_pred             EEEEEEEEEcCCcCCCCC---CCEEEE
Confidence            999999999999987655   345544

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-08  Score=88.10  Aligned_cols=82  Identities=21%  Similarity=0.295  Sum_probs=66.5

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      +|..+.+    ..++.++++|+|.+|.   +..+.+|.|++...++..|..........++++|.+|.|++.|.|++.|.
T Consensus         8 ~P~~l~v----~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~   80 (95)
T d2fnba_           8 QLTDLSF----VDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITL   80 (95)
T ss_dssp             CCTTCEE----ECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEE
T ss_pred             cCCCeEE----EEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEE
Confidence            4555554    3788999999999983   34789999999988777777655555667899999999999999999999


Q ss_pred             ecCCCCCCC
Q psy8139         427 NVVGFSEPG  435 (1101)
Q Consensus       427 n~~G~~~~s  435 (1101)
                      |..|.+.++
T Consensus        81 ~~~g~s~p~   89 (95)
T d2fnba_          81 INGGESAPT   89 (95)
T ss_dssp             ETTEECCCC
T ss_pred             eCCcEeCCE
Confidence            999987654

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.2e-09  Score=91.66  Aligned_cols=91  Identities=20%  Similarity=0.366  Sum_probs=71.5

Q ss_pred             eeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCcc
Q psy8139         339 CVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR  418 (1101)
Q Consensus       339 ~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~  418 (1101)
                      +.+.+.++.|++|..+.+. .++.++|.|+|.+|.  ++ .+.+|.|+++..+...|...  ......++.|.+|.|++.
T Consensus         2 v~v~T~~~vP~~P~~~~~~-~~~~~si~l~W~~p~--~~-~i~~Y~i~y~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~   75 (102)
T d1x5za1           2 IQVITQTGVPGQPLNFKAE-PESETSILLSWTPPR--SD-TIANYELVYKDGEHGEEQRI--TIEPGTSYRLQGLKPNSL   75 (102)
T ss_dssp             CCCCCCSCCCCCCEEEEEE-CSSSSEEEEEEECCS--CC-CCCEEEECBEESSSCCCBCC--EECSSSEEEEECCCTTCE
T ss_pred             eEEECCCCCCcCCCCeEEE-EccCCEEEEEEECCC--CC-CccceEEEEEeCCCCceEEE--EcCCcCEEEECCCCCCCE
Confidence            4566777788888877665 788999999999984  23 68999999987665544332  223557899999999999


Q ss_pred             EEEEEEEEecCCCCCCC
Q psy8139         419 YQFRITAENVVGFSEPG  435 (1101)
Q Consensus       419 y~y~c~A~n~~G~~~~s  435 (1101)
                      |.|++.|.|..|.+.+|
T Consensus        76 Y~~~V~A~n~~G~g~~S   92 (102)
T d1x5za1          76 YYFRLAARSPQGLGAST   92 (102)
T ss_dssp             EEECEEEECSSCEEEEC
T ss_pred             EEEEEEEEcCCCEeCCC
Confidence            99999999999987654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.4e-09  Score=88.09  Aligned_cols=74  Identities=11%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV  638 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v  638 (1101)
                      .+.+|++++|.|.+.|.|.|.+.|++++..+..          +...+.|.++...|+|.|+|.|.|..|.......+.|
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V   79 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV   79 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECE
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeeccccee----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEE
Confidence            577899999999999999999999987654321          1456899999999999999999999999888888888


Q ss_pred             ecCC
Q psy8139         639 TDRP  642 (1101)
Q Consensus       639 ~~~P  642 (1101)
                      .+.|
T Consensus        80 ~~~~   83 (84)
T d2nxyb2          80 LAFQ   83 (84)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            7655

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.8e-08  Score=86.27  Aligned_cols=88  Identities=23%  Similarity=0.347  Sum_probs=69.1

Q ss_pred             CCCeeeecCc-eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~-~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.|...+. ...+..|+++.|.|.+. .|.+.+.|+++|..+..+ ..+.+...++...|.|.++...|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            4555655544 45789999999999985 588899999999988754 45677777788899999999999999999985


Q ss_pred             eCCCceEEEEEEeec
Q psy8139         529 NRAGHSITKARLRLE  543 (1101)
Q Consensus       529 n~~g~~~~s~~l~V~  543 (1101)
                      |    ...++.|.|.
T Consensus        83 n----~~~s~~l~V~   93 (94)
T d1pd6a_          83 G----EKCSTELFVK   93 (94)
T ss_dssp             T----EEECCEEEEE
T ss_pred             e----EEEEEEEEEE
Confidence            5    3444556553

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1e-08  Score=89.56  Aligned_cols=33  Identities=9%  Similarity=0.029  Sum_probs=30.2

Q ss_pred             cCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139         742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  774 (1101)
Q Consensus       742 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  774 (1101)
                      +..++++|.+|.|++.|.|+|.|+|..|.|+++
T Consensus        62 ~~~~~~~v~~L~p~t~Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          62 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEECSSSEEEEE
T ss_pred             cceeEEEeCCCCcCCEEEEEEEEEeCCcEeCCe
Confidence            577899999999999999999999999997764

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=5.5e-09  Score=92.99  Aligned_cols=81  Identities=23%  Similarity=0.478  Sum_probs=60.8

Q ss_pred             EEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEE--------EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         463 TALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQR--------IVTDNDISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~--------~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      .+..|+++.|.|.+. |.|.+.++|++++..+.......        .......+.|.|.++...|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            577899999999984 89999999999998775432211        122233447999999999999999999999998


Q ss_pred             eEEE--EEEeec
Q psy8139         534 SITK--ARLRLE  543 (1101)
Q Consensus       534 ~~~s--~~l~V~  543 (1101)
                      ...+  ..|.|.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            7654  445443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.74  E-value=9.2e-10  Score=93.48  Aligned_cols=84  Identities=23%  Similarity=0.362  Sum_probs=71.7

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS  534 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~  534 (1101)
                      |..++.++.+.+|+++.|.|.+ +.|.|.+.|+++|..+..+.++.+...++...|.|.++...|+|.|+|.|.|.    
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----   78 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----   78 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----
Confidence            3455788999999999999997 57889999999999999888899988888899999999999999999998654    


Q ss_pred             EEEEEEeec
Q psy8139         535 ITKARLRLE  543 (1101)
Q Consensus       535 ~~s~~l~V~  543 (1101)
                      ..++.|.|.
T Consensus        79 ~~sa~l~V~   87 (89)
T d1tiua_          79 KSAANLKVK   87 (89)
T ss_dssp             BCCEEEEEE
T ss_pred             EEEEEEEEE
Confidence            334556654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.4e-08  Score=85.95  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             ceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE-EE
Q psy8139         460 HDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI-TK  537 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~-~s  537 (1101)
                      ....+.+|++++|.|.+.+. |...+.|+++|..+....        ....|.|.++..+|+|.|.|.|.|..|... ..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~   79 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEP   79 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeee
Confidence            34568899999999999765 455899999998875432        223799999999999999999999877653 34


Q ss_pred             EEEeeccCC
Q psy8139         538 ARLRLEAPP  546 (1101)
Q Consensus       538 ~~l~V~~~p  546 (1101)
                      +.|.|..+|
T Consensus        80 v~i~V~~~P   88 (89)
T d1f2qa2          80 LNITVIKAP   88 (89)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEEeCC
Confidence            678888776

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-08  Score=87.99  Aligned_cols=86  Identities=22%  Similarity=0.392  Sum_probs=64.4

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      +|++|..+.+. .++.++|+|+|.+|...++ +|.+|.|.|...+...+... .......+++|.+|.+++.|.|++.|.
T Consensus         3 ~P~~p~~~~~~-~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~   79 (98)
T d1x5la1           3 APSQVVVIRQE-RAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYS-TLKAVTTRATVSGLKPGTRYVFQVRAR   79 (98)
T ss_dssp             CCCCCCCEECS-CBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCE-EEEESSSEEEECSCCTTCEEEECEEEE
T ss_pred             CCCCCCceEEE-eccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceeeE-EecCCceEEEECCCCCCCEEEEEEEEE
Confidence            34444444444 8899999999999976555 88999999987654332211 122455789999999999999999999


Q ss_pred             ecCCCCCCC
Q psy8139         427 NVVGFSEPG  435 (1101)
Q Consensus       427 n~~G~~~~s  435 (1101)
                      |..|.+.+|
T Consensus        80 n~~G~g~~S   88 (98)
T d1x5la1          80 TSAGCGRFS   88 (98)
T ss_dssp             ETTEECCCC
T ss_pred             cCCCCcCCC
Confidence            999987655

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1e-09  Score=96.77  Aligned_cols=83  Identities=22%  Similarity=0.434  Sum_probs=63.5

Q ss_pred             ceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEE-------ecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         460 HDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIV-------TDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~-------~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ....+..|+.++|.|.+ .|.|.+.+.|++++..+.........       .....+.|.|.++...|+|.|+|.|.|..
T Consensus        10 ~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   89 (104)
T d1nbqa2          10 IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY   89 (104)
T ss_dssp             CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred             CCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECC
Confidence            34567889999999988 58999999999999877544322211       11223479999999999999999999999


Q ss_pred             CceEEEEEEee
Q psy8139         532 GHSITKARLRL  542 (1101)
Q Consensus       532 g~~~~s~~l~V  542 (1101)
                      |....++.+.|
T Consensus        90 G~~~~s~~v~v  100 (104)
T d1nbqa2          90 GTPMTSNAVRM  100 (104)
T ss_dssp             SCCEECCCBCC
T ss_pred             CceEEEEEEEE
Confidence            98877655444

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.3e-08  Score=88.25  Aligned_cols=89  Identities=16%  Similarity=0.130  Sum_probs=67.5

Q ss_pred             CeeeecCc-eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEe----c--C------CeeEEEEeecCCCC
Q psy8139         453 PSFIRALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT----D--N------DISTLIIHQAALMD  519 (1101)
Q Consensus       453 P~~~~~p~-~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~----~--~------~~~~l~I~~l~~~d  519 (1101)
                      |.+...+. .+.+..|++++|.|.+.|.|.|.+.|.++|..+..........    .  .      ..+.|+|.++...|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            45554443 3557789999999999999999999999999876543221110    0  0      13589999999999


Q ss_pred             CE-EEEEEEEeCCCceEEEEEEe
Q psy8139         520 EG-EIKCTATNRAGHSITKARLR  541 (1101)
Q Consensus       520 ~g-~Y~C~a~n~~g~~~~s~~l~  541 (1101)
                      .| .|+|.|.|..|.......|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999887776664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.7e-08  Score=85.74  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+++.|.|.+. +.|.+.+.|++++..+..+... .    ..+.|.|.++...|+|.|+|.|.|..|....+..
T Consensus        11 ~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1gl4b_          11 SQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-D----FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   85 (89)
T ss_dssp             EEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-E----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-e----eceEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence            45788899999999997 5788999999998877654322 1    1457999999999999999999999998888887


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      |.|
T Consensus        86 l~V   88 (89)
T d1gl4b_          86 LHV   88 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.8e-08  Score=84.98  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      |..|..|.+. ..+.++|+|+|.+|..+++..+.+|.|.+...+.. |...    ....+++|.+|.|++.|.|+|.|.|
T Consensus         3 p~~p~~L~~~-~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~----~~~t~~~i~~L~p~t~Y~~rV~A~n   76 (94)
T d1x5aa1           3 SLSGLSLKLV-KKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQM----VLEPRVLLTKLQPDTTYIVRVRTLT   76 (94)
T ss_dssp             CCCSCCCCEE-EEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEE----ESSSEEEEESCCSSCEEEEEEEEEC
T ss_pred             CCCCCceEEE-EcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEe----eccCEEEECCCCCCCEEEEEEEEEc
Confidence            3444444444 78899999999998656666778999999875543 3322    3457899999999999999999999


Q ss_pred             cCCCCCCC
Q psy8139         428 VVGFSEPG  435 (1101)
Q Consensus       428 ~~G~~~~s  435 (1101)
                      ..|.+..|
T Consensus        77 ~~G~g~~S   84 (94)
T d1x5aa1          77 PLGPGPFS   84 (94)
T ss_dssp             SSSCCCCC
T ss_pred             CCcCcCCC
Confidence            99988765

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.7e-09  Score=90.14  Aligned_cols=82  Identities=17%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc--CCCCCCC
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF--SEPGPLS  777 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~--g~~S~~s  777 (1101)
                      +.+++.|+|.+|...++..+..|.|+|+..++..+..........+.++|.+|.|++.|.|+|+|.+..|.  |.+|+++
T Consensus        16 ~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~~~g~WSeWS   95 (100)
T d2gysa4          16 DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWS   95 (100)
T ss_dssp             --CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCC
T ss_pred             CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCCCCCCccCCC
Confidence            44679999999987777778899999997766433332223356789999999999999999999998874  8889988


Q ss_pred             CcEE
Q psy8139         778 EPLT  781 (1101)
Q Consensus       778 ~~~t  781 (1101)
                      ..++
T Consensus        96 ~~~~   99 (100)
T d2gysa4          96 EARS   99 (100)
T ss_dssp             CCEE
T ss_pred             CCcc
Confidence            7654

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.1e-08  Score=86.85  Aligned_cols=97  Identities=14%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCC-CCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY-DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~-~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      .|+||..+.+.. . ...++.+.|+|++|.. +++..+..|.|+++..+...|...... .....+.|.+|.|++.|.|+
T Consensus         1 kP~pP~~l~v~~-~-~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~r   77 (104)
T d1n26a3           1 QPDPPANITVTA-V-ARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVK-DLQHHCVIHDAWSGLRHVVQ   77 (104)
T ss_dssp             CCCCCEEEEEEE-C-TTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECG-GGCSEEEESSCCTTCCEEEE
T ss_pred             CCcCCCCCEEEE-E-ecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccc-cceEEEEECCCCCCCEEEEE
Confidence            367777766521 1 3456789999999853 456678999999999888888776533 45578999999999999999


Q ss_pred             EEEEecCCCCCCCCCCcceEE
Q psy8139         423 ITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       423 c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      |.|.|..|.|.+|.+|..+..
T Consensus        78 Vra~n~~g~g~wSewS~~~~~   98 (104)
T d1n26a3          78 LRAQEEFGQGEWSEWSPEAMG   98 (104)
T ss_dssp             EEEEETTTBSCCCCCCCCEEE
T ss_pred             EEEEeCCCccCCcCCcCCEEe
Confidence            999999999999888776643

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.72  E-value=3.2e-09  Score=93.36  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             CceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139         459 LHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK  537 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s  537 (1101)
                      +..+.+.+|+++.|.|.+ .|.|.+.+.|+++|..+..............++|.|.++...|+|.|+|.|.|..|....+
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            345789999999999997 7899999999999876543222222222223479999999999999999999998876654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=91.06  Aligned_cols=90  Identities=18%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             CeEEeeCCEEEEEEEEeecC---CCeeEEEECCeecC---CCCceEEEe------ecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP---PPTARWLHNGEPLT---SGGRYEITH------TDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p---~~~v~W~~~g~~l~---~~~~~~~~~------~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      .+.+..|+++.|.|.+.|.|   .|.|.|++++....   ....+.+..      .....+|.|.++.+.|.|.|+|.|.
T Consensus         9 ~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (113)
T d2dava1           9 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   88 (113)
T ss_dssp             CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             eEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEE
Confidence            45889999999999999998   58999999865431   222222221      1224579999999999999999999


Q ss_pred             eCCCCceeEEEEEEecCCCCCC
Q psy8139         625 NSLGEDVASFLVTVTDRPLPPG  646 (1101)
Q Consensus       625 N~~G~~~~s~~l~v~~~P~~P~  646 (1101)
                      |..|..+.++.|.|..+|..+.
T Consensus        89 N~~G~~~~~~~L~V~~~~~~~p  110 (113)
T d2dava1          89 YKDKFDSCSFDLEVHESTGTTP  110 (113)
T ss_dssp             CSSCEEEECCEEEEECCCCSCC
T ss_pred             eCCCEEEEEEEEEEEcCCCcCC
Confidence            9999999999999987765443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.2e-08  Score=87.12  Aligned_cols=81  Identities=20%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.......+...+ .++|.|.++...|+|.|+|.|.|..|.......+
T Consensus        10 ~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i   88 (92)
T d1epfa2          10 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI   88 (92)
T ss_dssp             SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred             CEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeee-eeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEE
Confidence            457888999999999999999999999999988765443333322 3469999999999999999999988876665555


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        89 ~V   90 (92)
T d1epfa2          89 QV   90 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.7e-09  Score=92.21  Aligned_cols=100  Identities=21%  Similarity=0.349  Sum_probs=76.8

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCcc--ccccceEEEcCccCCccEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH--MVEDTELMVSGLEPGWRYQF  421 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~--~~~~~~l~i~~L~p~d~y~y  421 (1101)
                      .|.||..+.+. .. ..+.++|+|+|.+|...++ .+.+|.|+++...+..|......  .....++.|.+|.+++.|.|
T Consensus         4 kP~pP~~~~v~-~~-~~~~~si~v~W~~p~~~~~-~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~   80 (115)
T d1bqua2           4 KPNPPHNLSVI-NS-EELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF   80 (115)
T ss_dssp             ECCCCEEEEEE-CC---CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEE
T ss_pred             ECCCCCCCEEE-Ee-ccCCCEEEEEEeecccccc-ceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEE
Confidence            46677666542 22 5678899999999865554 78999999998887777654432  24457899999999999999


Q ss_pred             EEEEEecCCCCCCCCCCcceEEEec
Q psy8139         422 RITAENVVGFSEPGPLSEPLTVTYQ  446 (1101)
Q Consensus       422 ~c~A~n~~G~~~~s~~s~~vtv~~~  446 (1101)
                      +|.|.|..|.+.+|.+|..+++...
T Consensus        81 ~V~a~~~~G~g~~S~~S~~~~~~T~  105 (115)
T d1bqua2          81 RIRCMKEDGKGYWSDWSEEASGITY  105 (115)
T ss_dssp             EEEEEETTSCSCCCCCCCCEEEEEC
T ss_pred             EEEEEeCCCccCCcCCcCCEEEECC
Confidence            9999999999988888877777653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.70  E-value=3.5e-08  Score=83.32  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             CceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-
Q psy8139         459 LHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-  536 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-  536 (1101)
                      +....+.+|++++|.|.+. +.|.+.+.|+++|..+...      ..+  ..|.|.++...|+|.|+|.|.|..|...+ 
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~~~--~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~   80 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------HHN--SDFHIPKATLKDSGSYFCRGLVGSKNVSSE   80 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------ccc--cccEECccceeccceEEEEEEeCCCCeEEe
Confidence            3345688999999999987 4566689999999876431      122  27999999999999999999998876543 


Q ss_pred             EEEEeec
Q psy8139         537 KARLRLE  543 (1101)
Q Consensus       537 s~~l~V~  543 (1101)
                      .+.|.|.
T Consensus        81 ~v~itV~   87 (89)
T d1fnla2          81 TVNITIT   87 (89)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            4566654

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.70  E-value=2.2e-08  Score=87.95  Aligned_cols=85  Identities=16%  Similarity=0.305  Sum_probs=65.0

Q ss_pred             CCcccCCCCCCCCCeeEEEEeCCC-CCCCcCeeEEEEEEEecCC-CceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         350 KPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       350 ~p~~l~~~~~~~~~sv~l~W~~p~-~~g~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      +|..+.+. ..+.++++|+|.++. ...++++.+|.|.|+..+. ..|...........+++|.+|.+++.|.|+|.|.|
T Consensus         7 ~P~~v~~~-~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N   85 (105)
T d1cfba2           7 NPDNVVGQ-GTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIN   85 (105)
T ss_dssp             CCSCCEEE-CSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred             CCcCeEEE-EccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            45555444 778899999999843 3445589999999987653 34555443345567899999999999999999999


Q ss_pred             cCCCCCCC
Q psy8139         428 VVGFSEPG  435 (1101)
Q Consensus       428 ~~G~~~~s  435 (1101)
                      ..|.|.++
T Consensus        86 ~~G~gp~S   93 (105)
T d1cfba2          86 DRGESNVA   93 (105)
T ss_dssp             TTEECSSC
T ss_pred             CCcCCCCC
Confidence            99998765

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.69  E-value=4.9e-08  Score=86.50  Aligned_cols=83  Identities=23%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC----CC---------ceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS----GG---------RYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~----~~---------~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      ....+..|+++.|.|.+.|.|.|.|.|++++.....    ..         ............|.|.++...|.|.|+|.
T Consensus        13 ~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   92 (109)
T d2fdbp2          13 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL   92 (109)
T ss_dssp             CCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEE
Confidence            466899999999999999999999999986544221    10         00111122356799999999999999999


Q ss_pred             EEeCCCCceeEEEEEE
Q psy8139         623 GVNSLGEDVASFLVTV  638 (1101)
Q Consensus       623 A~N~~G~~~~s~~l~v  638 (1101)
                      |.|..|....++.|.|
T Consensus        93 a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          93 AGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EECSSCEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999999988888877

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.2e-08  Score=87.62  Aligned_cols=75  Identities=27%  Similarity=0.424  Sum_probs=62.7

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ..+.+++.|+|.+|..+++ +|.+|.|+++..+...|..... .....++.|.+|.|++.|.|++.|.|..|.+.++
T Consensus        10 ~~~~~sv~l~W~pP~~~~g-~i~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s   84 (94)
T d2dn7a1          10 TTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDF-GKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF   84 (94)
T ss_dssp             ECSTTEEEEEEECCSSCSS-CCCEEEEEEEETTCSSCEEEEE-ETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEE
T ss_pred             EEeCCEEEEEEeCCCCCCC-ceEEEEEEEEEcCCCCcEEEEc-CCCccEEEEEccCCeeEEEEEEEEEcCCcCCCCc
Confidence            5778999999999975554 8999999999888777775532 2456789999999999999999999999987654

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.8e-08  Score=89.02  Aligned_cols=31  Identities=23%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             cCccEEEEcCCCCCceEEEEEEEEcCCccCC
Q psy8139         742 VEDTELMVSGLEPGWRYQFRITAENVVGFSE  772 (1101)
Q Consensus       742 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~  772 (1101)
                      ...+++++.+|.|++.|.|+|.|.|.+|.|.
T Consensus        65 ~~~~~~~~~~L~~~t~Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSE   95 (107)
T ss_dssp             CCEEEEEGGGCCTTSCEEEEEEEEETTEEEE
T ss_pred             ccccEEEcCCCCcCceEEEEEEEEeCCcccc
Confidence            4567889999999999999999999999864

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.4e-09  Score=88.16  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR  539 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~  539 (1101)
                      .+..+.+|+++.|.|.+.| |.|.+.|+++|..+...........++  +|.|.++.+.|+|.|+|.|.|..|.......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            3567899999999999998 667999999998876543322222333  6999999999999999999999887655443


Q ss_pred             E
Q psy8139         540 L  540 (1101)
Q Consensus       540 l  540 (1101)
                      |
T Consensus        82 l   82 (92)
T d1olza1          82 V   82 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.5e-08  Score=83.34  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce-eEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASF  634 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~-~s~  634 (1101)
                      ...+..|+++.|.|.+.|.|.| ++.|+++|..+....         ...++|......|+|.|+|.|.|..|... ..+
T Consensus        10 ~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~---------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~   80 (85)
T d1rhfa2          10 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTA   80 (85)
T ss_dssp             CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCE
T ss_pred             cEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC---------CcceEEecCCccccEEEEEEEEcCCCcEEEEEE
Confidence            4578899999999999999987 899999999886532         12234444556799999999999999643 356


Q ss_pred             EEEE
Q psy8139         635 LVTV  638 (1101)
Q Consensus       635 ~l~v  638 (1101)
                      .+.|
T Consensus        81 ~v~V   84 (85)
T d1rhfa2          81 TVHL   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=2.8e-08  Score=85.67  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=68.7

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce-eEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~-~s~~l  636 (1101)
                      ..+.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++.+..  ...+|.|.++...|.|.|+|.|.|..|... ....|
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L   89 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL   89 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence            46888999999999866 568999999999998877776544  356899999999999999999999999764 46788


Q ss_pred             EEecCC
Q psy8139         637 TVTDRP  642 (1101)
Q Consensus       637 ~v~~~P  642 (1101)
                      .|..+|
T Consensus        90 ~V~~~P   95 (96)
T d1l6za2          90 DIIFDP   95 (96)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            887665

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=7.1e-08  Score=84.16  Aligned_cols=87  Identities=21%  Similarity=0.363  Sum_probs=65.4

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEee----------c--CCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF----------S--SRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~----------~--~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      |.+...+.++.+.+|++++|.|.+.|.|.|.+.|++.+....          .  ..+...  .+  ++|.|.++...|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~tL~I~~v~~~D~   77 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SS--SGITFSSVTRKDN   77 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ET--TEEEESCCCGGGC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cC--CEEEEeECCccCC
Confidence            445556677889999999999999999999999998432111          0  111111  12  2799999999999


Q ss_pred             EEEEEEEEeCCCceEEEEEEeec
Q psy8139         521 GEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       521 g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      |.|+|.|.|..|.......+.|.
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999999998777665553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.1e-08  Score=82.44  Aligned_cols=77  Identities=13%  Similarity=0.115  Sum_probs=63.5

Q ss_pred             CeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .+.+..|+++.|.|.+. |.|.+.+.|.+.+.++..     .......+.|.|.+++..|.|.|+|.|.|..|..+.+..
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~   86 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   86 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEE
Confidence            34678899999999885 789999999987766532     223345788999999999999999999999998888887


Q ss_pred             EEE
Q psy8139         636 VTV  638 (1101)
Q Consensus       636 l~v  638 (1101)
                      |.|
T Consensus        87 l~V   89 (90)
T d1gsma1          87 LLV   89 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.4e-08  Score=89.51  Aligned_cols=101  Identities=23%  Similarity=0.374  Sum_probs=74.9

Q ss_pred             ceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc--eEEcCccccccceEEEcCc
Q psy8139         336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY--WVRASPHMVEDTELMVSGL  413 (1101)
Q Consensus       336 ~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~--w~~~~~~~~~~~~l~i~~L  413 (1101)
                      +....+.+.|++|..+.+    ..++.++|.|+|.+|. +++..+..|.++++......  |.... .......+.|.+|
T Consensus         8 p~~~~v~d~P~~P~~~~v----~~~~~~sv~l~W~~p~-~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L   81 (127)
T d1ueya_           8 PTPAPVYDVPNPPFDLEL----TDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQT-EVSGTQTTAQLNL   81 (127)
T ss_dssp             CCCCCCCCSCCCCEEEEE----ECCSSSCEEEEEECCC-CCSSCEEEEEEEEEBTTTCTTCEEEEE-EEESSCCEEEECC
T ss_pred             CccccccccCcCCCCcEE----EEecCCeEEEEEeCCc-ccccceEeeeeeeccccccceeEEEEe-ecCCceEEEECCC
Confidence            355566677777666655    2788999999999885 55558999999998654433  33322 2245567999999


Q ss_pred             cCCccEEEEEEEEecCCCCCCCCCCcceE
Q psy8139         414 EPGWRYQFRITAENVVGFSEPGPLSEPLT  442 (1101)
Q Consensus       414 ~p~d~y~y~c~A~n~~G~~~~s~~s~~vt  442 (1101)
                      .+++.|.|++.|.|..|.+.+|..+..++
T Consensus        82 ~p~t~Y~frV~A~n~~G~s~~S~~s~~~~  110 (127)
T d1ueya_          82 SPYVNYSFRVMAVNSIGKSLPSEASEQYL  110 (127)
T ss_dssp             CTTCEECCEEEEEESSCBCCCCSCCCCEE
T ss_pred             ccCCEEEEEEEEEcCCcCcCCcCCcccEE
Confidence            99999999999999999988876555443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.8e-08  Score=86.47  Aligned_cols=94  Identities=14%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEec-cCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA  527 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a  527 (1101)
                      .||.+...|....+.+|+.++|.|.+.| .|.+  .++|++++..+.....   ......+.|+|.....+|.|.|+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEE
Confidence            3566666777778899999999999986 4555  5889999988864321   12234558999999999999999999


Q ss_pred             EeCCCceEEEEEEeeccCCc
Q psy8139         528 TNRAGHSITKARLRLEAPPT  547 (1101)
Q Consensus       528 ~n~~g~~~~s~~l~V~~~p~  547 (1101)
                      .|..|.......+.+..|+.
T Consensus        80 ~n~~g~~~~~~~~~~s~p~~   99 (103)
T d1iama1          80 ELDLRPQGLELFENTSAPYQ   99 (103)
T ss_dssp             EEECGGGTSCEEEEECCCEE
T ss_pred             EeCCCCccCeEeeeEcCCCE
Confidence            99999877776777765543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.4e-08  Score=85.56  Aligned_cols=80  Identities=26%  Similarity=0.442  Sum_probs=65.0

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec-------ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD-------RYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-------~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      +....+.|.+.|.|.|.+.|+++|.++..+.........       ..+.|.|.++...|.|.|+|.|.|..|....+..
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~   94 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEE
Confidence            344456679999999999999999999766544433211       2467999999999999999999999999999999


Q ss_pred             EEEecCC
Q psy8139         636 VTVTDRP  642 (1101)
Q Consensus       636 l~v~~~P  642 (1101)
                      +.+..+|
T Consensus        95 v~v~~~P  101 (107)
T d1he7a_          95 AAFMDNP  101 (107)
T ss_dssp             ECCCSCT
T ss_pred             EEEEcCC
Confidence            9888777

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.6e-09  Score=90.54  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCe-EEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG-EYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y-~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ..........|.|.++...|.| .|+|.|.|..|....++.|
T Consensus        12 ~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l   89 (92)
T d2ifga1          12 ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV--MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV   89 (92)
T ss_dssp             SCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE--CCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECC
T ss_pred             EEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee--eeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEE
Confidence            367789999999999999999999999987765322  1223345678999999999999 6999999999998877766


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        90 ~V   91 (92)
T d2ifga1          90 NV   91 (92)
T ss_dssp             CC
T ss_pred             EE
Confidence            54

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.3e-09  Score=91.72  Aligned_cols=86  Identities=15%  Similarity=0.292  Sum_probs=63.5

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE--E--------EEecCCeeEEEEeecCCCCCEEEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--R--------IVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~--~--------~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+......  .        ....+  ++|.|.++...|+|.|+
T Consensus         7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYT   84 (105)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEE
T ss_pred             EECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC--ceEEEecccccceeeEE
Confidence            344455677899999999999999999999999865332211000  0        01111  27999999999999999


Q ss_pred             EEEEeCCCceEEEEEEee
Q psy8139         525 CTATNRAGHSITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~~~~s~~l~V  542 (1101)
                      |.|.|..|.....+.|.|
T Consensus        85 C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEETTSSCEECCEEEC
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            999999999877665554

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.64  E-value=7.9e-09  Score=90.76  Aligned_cols=78  Identities=21%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             CCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         556 DGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..............++|.|.++.+.|.|.|+|.|.|..|....+
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            45689999999999997 6899999999999877654333333333445689999999999999999999999876554

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.2e-08  Score=85.21  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=64.1

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      |.+|..+.++    ..+.++|+|+|.+|...+| .|.+|.++++......|.... .......+.|.+|.|++.|.|+|.
T Consensus         1 P~~~~~l~~~----~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~   74 (95)
T d2djsa1           1 PSTVPIMHQV----SATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSM-ARSQTNTARIDGLRPGMVYVVQVR   74 (95)
T ss_dssp             CCCCSCCEEE----EECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCEE-EEESSSEEEEESCCTTCEEEEEEE
T ss_pred             CCCCCccEEE----eecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeEe-ecCCccEEEEeecCCccEEEEEEE
Confidence            3444445443    7789999999999975555 899999999876654432211 123557899999999999999999


Q ss_pred             EEecCCCCCCC
Q psy8139         425 AENVVGFSEPG  435 (1101)
Q Consensus       425 A~n~~G~~~~s  435 (1101)
                      |.|..|.+.+|
T Consensus        75 A~n~~G~g~~S   85 (95)
T d2djsa1          75 ARTVAGYGKFS   85 (95)
T ss_dssp             EEESSCEEEEC
T ss_pred             EEcCCCCCCCC
Confidence            99999987655

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.4e-09  Score=101.96  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=36.4

Q ss_pred             CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139         697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  776 (1101)
Q Consensus       697 ~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  776 (1101)
                      ...++++|.|+|++|..+| +.|.+|.|+|+..+...+..      .........|.+++.|.++|.|.|..|.+..+..
T Consensus        12 ~~~s~~si~vsW~pP~~~n-g~i~~Y~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~v~~~~~~~~~~~~~~   84 (196)
T d2dtge2          12 VSNSSSQIILKWKPPSDPN-GNITHYLVFWERQAEDSELF------ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE   84 (196)
T ss_dssp             EECSSSCEEEEEECCCCSS-SSCSEEECCEEEECCCCSCT------TCSSSCSCCCCCC---------------------
T ss_pred             EeccCCEEEEEEECCCCCC-CcEEEEEEEEEcCCCCCcee------EEeeEEeccccceeEEEEEEEEEcCCccccCcCC
Confidence            3578999999999998665 47999999999876544332      1122233457788999999999999998765543


Q ss_pred             C
Q psy8139         777 S  777 (1101)
Q Consensus       777 s  777 (1101)
                      .
T Consensus        85 ~   85 (196)
T d2dtge2          85 D   85 (196)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-08  Score=83.78  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+.....             +.+++..|+|.|+|.|.|..|..+....
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            356788999999999999999999999999876654322             2346778999999999999999888888


Q ss_pred             EEEec
Q psy8139         636 VTVTD  640 (1101)
Q Consensus       636 l~v~~  640 (1101)
                      |.|..
T Consensus        79 l~V~~   83 (84)
T d2oz4a3          79 VNVLS   83 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88864

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.61  E-value=2.6e-08  Score=86.07  Aligned_cols=74  Identities=23%  Similarity=0.271  Sum_probs=58.5

Q ss_pred             CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEE
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVT  637 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~  637 (1101)
                      ++++.|.|.+.|.|.|.+.|+++|..+............ ...+.|..+...|.|.|+|.|.|..|.. +..+.|.
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            478999999999999999999999998765444333332 4578888899999999999999999975 3345543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.61  E-value=3.3e-08  Score=84.80  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      .+.+..|+++.|.|.+.|.|.| .+.|+++|..+......... ....++|.|.++...|.|.|+|.|.|..|...
T Consensus        11 ~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          11 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            4578899999999999999865 79999999998754433222 23456799999999999999999999999643

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.4e-08  Score=85.77  Aligned_cols=87  Identities=16%  Similarity=0.303  Sum_probs=66.7

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCC-----ceEEcCccccccceEEEcCccCCcc
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-----YWVRASPHMVEDTELMVSGLEPGWR  418 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~-----~w~~~~~~~~~~~~l~i~~L~p~d~  418 (1101)
                      .|++|..+.+    ..++.+++.|+|.+|...+ .++.+|.|++......     .|...........+++|.+|.+++.
T Consensus         2 ~P~~P~~~~~----~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   76 (103)
T d1qg3a2           2 VPSEPGRLAF----NVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQP   76 (103)
T ss_dssp             CCCCCCCCEE----EEEETTEEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCC
T ss_pred             cCccCCCcEE----EEecCCEEEEEEEECccCC-CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCE
Confidence            4666666666    3788999999999996554 4899999999765433     2333333334557899999999999


Q ss_pred             EEEEEEEEecCCCCCCC
Q psy8139         419 YQFRITAENVVGFSEPG  435 (1101)
Q Consensus       419 y~y~c~A~n~~G~~~~s  435 (1101)
                      |.|++.|.|..|.+.++
T Consensus        77 Y~~~V~A~n~~G~g~~s   93 (103)
T d1qg3a2          77 YRYTVKARNGAGWGPER   93 (103)
T ss_dssp             EEEEEEEEETTEECCCE
T ss_pred             EEEEEEEEcCCccCCCc
Confidence            99999999999988654

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.5e-08  Score=83.69  Aligned_cols=79  Identities=23%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             CcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCC
Q psy8139         351 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG  430 (1101)
Q Consensus       351 p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G  430 (1101)
                      |..|.+. +++.+++.|+|.+|.    ..+.+|.|++.......|..........+++.|.+|.|++.|.|++.|.|..|
T Consensus         4 P~~l~v~-~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (89)
T d1fnfa3           4 PTGIDFS-DITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE   78 (89)
T ss_dssp             CEEEEEE-SCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             CcCCEEE-EecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCc
Confidence            3444444 889999999999983    36889999998877666554433445667899999999999999999999998


Q ss_pred             CCCC
Q psy8139         431 FSEP  434 (1101)
Q Consensus       431 ~~~~  434 (1101)
                      .+.+
T Consensus        79 ~s~p   82 (89)
T d1fnfa3          79 ESPL   82 (89)
T ss_dssp             ECCC
T ss_pred             CcCC
Confidence            7654

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.2e-07  Score=82.80  Aligned_cols=97  Identities=20%  Similarity=0.323  Sum_probs=70.2

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCC---CCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~---~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      .|.||.++.+.........++++|+|.+|..   +++..+..|.|+++..+...|....  ....+.+.|.+|.+++.|.
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~   79 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHF--TGHQTQFKVFDLYPGQKYL   79 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEE--EETCSEEEECCCCTTCEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeec--ccceeEEEeCCCCcceEEE
Confidence            4667766554222124567889999999853   3455778999999998888887543  2456789999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCcceEEE
Q psy8139         421 FRITAENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s~~s~~vtv~  444 (1101)
                      |+|+|.|..|.  +|.+|..+.+.
T Consensus        80 ~rVra~~~~G~--wS~wS~~~~~~  101 (103)
T d1f6fb2          80 VQTRCKPDHGY--WSRWSQESSVE  101 (103)
T ss_dssp             EEEEEEESSSC--CCCCCCCEEEE
T ss_pred             EEEEEEeCCCC--CCCCcCceeeE
Confidence            99999998774  45556666653

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.7e-08  Score=82.47  Aligned_cols=71  Identities=23%  Similarity=0.396  Sum_probs=56.6

Q ss_pred             CCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc-eEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~-w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .++++.|+|.+|.   +..|.+|.|+|+..++.. |... .......+++|.||.|++.|.+++.|.|..|.+..+
T Consensus        14 ~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~-~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~   85 (93)
T d1owwa_          14 QPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT   85 (93)
T ss_dssp             CTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEE-EECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred             CCCEEEEEeeccc---ccceeEEEEEEeeccccceeeee-ccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence            4589999999983   347999999999866554 3333 233456789999999999999999999999987643

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.1e-08  Score=84.72  Aligned_cols=86  Identities=23%  Similarity=0.346  Sum_probs=67.1

Q ss_pred             CCeEEeeCCEEEEEEEEeecC---CCeeEEEECCeecCC---CCceEEEe------ecceEEEEEccCCCCCCeEEEEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMP---PPTARWLHNGEPLTS---GGRYEITH------TDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p---~~~v~W~~~g~~l~~---~~~~~~~~------~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      ..+.+..|+.+.|.|.+.|.|   .|.|.|++++.....   +..+....      .....+|.|.++++.|.|.|+|.|
T Consensus        12 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (110)
T d2avga1          12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEV   91 (110)
T ss_dssp             CCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEE
T ss_pred             CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEE
Confidence            356888999999999999998   578999998754321   22222221      112467999999999999999999


Q ss_pred             EeCCCCceeEEEEEEecC
Q psy8139         624 VNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       624 ~N~~G~~~~s~~l~v~~~  641 (1101)
                      .|..|..+.+..|.|..+
T Consensus        92 ~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          92 STKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EETTEEEEEEEEEEEESC
T ss_pred             EECCCeEEEEEEEEEEec
Confidence            999999999999999753

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.9e-07  Score=83.65  Aligned_cols=94  Identities=16%  Similarity=0.094  Sum_probs=68.2

Q ss_pred             eeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCC-CCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccC
Q psy8139         337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP  415 (1101)
Q Consensus       337 ~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~-~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p  415 (1101)
                      ..+.+.+.+.+|+.|..+... ..+.++|+|+|+++. .+.+..|.+|.|+|+..+...|...    .....+.+.+|.+
T Consensus         7 ~~v~v~T~~~~P~~pp~~~~~-~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~----~~~~~~~~~~L~p   81 (117)
T d1wj3a_           7 GTVNVTTKKTPPSQPPGNVVW-NATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL----NTNKTSAELVLPI   81 (117)
T ss_dssp             CCCCCCCSCCCCCCCCCSCBC-CEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEE----EESSSEEEEECCC
T ss_pred             CCEEEEcCCCCcCCCCcceEE-eecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeee----eceeeEEEeeccC
Confidence            344555666666554333333 577899999999843 3444589999999988776655433    2345678889999


Q ss_pred             CccEEEEEEEEecCCCCCCC
Q psy8139         416 GWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       416 ~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ++.|.|+|.|.|..|.+..|
T Consensus        82 ~t~Y~~~V~A~n~~G~G~~S  101 (117)
T d1wj3a_          82 KEDYIIEVKATTDGGDGTSS  101 (117)
T ss_dssp             SSCEEEEEEEEESSCCCCBC
T ss_pred             CcEEEEEEEEEcCCccCCCC
Confidence            99999999999999988765

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.58  E-value=8.3e-08  Score=79.99  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|....+.+|++++|.|.+.|.|.+. +.|++++..+...          ...|.|.++...|+|.|+|.|.|
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccC
Confidence            456777888888999999999999999999885 5677888766432          23799999999999999999876


Q ss_pred             CCC
Q psy8139         530 RAG  532 (1101)
Q Consensus       530 ~~g  532 (1101)
                      ..+
T Consensus        74 s~~   76 (84)
T d1fnla1          74 STL   76 (84)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.58  E-value=4.9e-08  Score=81.70  Aligned_cols=71  Identities=17%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .|.+...|....+.+|++++|.|.+.+.|.+ .+.|+++|..+...          ...|.|.++...|+|.|+|.|.|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEECCCC
Confidence            5667777888899999999999999998876 58899999887542          236999999999999999999876


Q ss_pred             CC
Q psy8139         531 AG  532 (1101)
Q Consensus       531 ~g  532 (1101)
                      .+
T Consensus        74 ~~   75 (85)
T d2fcba1          74 SL   75 (85)
T ss_dssp             BC
T ss_pred             cc
Confidence            44

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.5e-08  Score=83.21  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      .+|..+.+   . .++.++++|+|.+|    ...+.+|.|.+...++..+...........+++|.+|.|++.|.|++.|
T Consensus         3 d~P~~l~v---~-~~s~~s~~l~W~~p----~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   74 (90)
T d1tena_           3 DAPSQIEV---K-DVTDTTALITWFKP----LAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLIS   74 (90)
T ss_dssp             CCCEEEEE---E-SCCSSCEEEEEECC----SSCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCcEE---E-EecCCEEEEEEEeC----ceEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEE
Confidence            44444444   3 78899999999998    3468899999988765544333333456688999999999999999999


Q ss_pred             EecCCCCCC
Q psy8139         426 ENVVGFSEP  434 (1101)
Q Consensus       426 ~n~~G~~~~  434 (1101)
                      .|..|.+.+
T Consensus        75 ~~~~g~s~~   83 (90)
T d1tena_          75 RRGDMSSNP   83 (90)
T ss_dssp             EETTEECCC
T ss_pred             EeCCCEeCC
Confidence            999987754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.2e-08  Score=83.00  Aligned_cols=84  Identities=11%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEE--C-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLH--N-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      ..+.+..|+++.|.|.+.|.|.|.+.|++  + +..+.......+.......+|.|.++.+.|.|.|+|.|.|..|...+
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   88 (96)
T d2c9aa1           9 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS   88 (96)
T ss_dssp             CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEE
Confidence            35688999999999999999988766543  2 22222222223333344568999999999999999999999998644


Q ss_pred             -EEEEEEe
Q psy8139         633 -SFLVTVT  639 (1101)
Q Consensus       633 -s~~l~v~  639 (1101)
                       .+.|.|.
T Consensus        89 ~~a~L~Vk   96 (96)
T d2c9aa1          89 NYAELVVK   96 (96)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence             4677763

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.5e-08  Score=81.86  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             CCCCCCccEEEEec-CCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCc
Q psy8139         641 RPLPPGKAKVVMTL-GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV  719 (1101)
Q Consensus       641 ~P~~P~~~~~~~~~-~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i  719 (1101)
                      .|+||.++++.... ++.+.|+|++|.....                                           ..+.-.
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~-------------------------------------------~~~~~~   37 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWST-------------------------------------------PHSYFS   37 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCS-------------------------------------------CTTTSC
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCC-------------------------------------------CCCeEE
Confidence            37888888876543 3557777876642111                                           112236


Q ss_pred             ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcE
Q psy8139         720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPL  780 (1101)
Q Consensus       720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~  780 (1101)
                      +.|.|.|+..++..|.....  ...+.   .+|.|++.|.|+|+|.+..|.|.+|++|.+.
T Consensus        38 L~Yev~y~~~~~~~~~~~~~--~~~t~---~~L~p~~~Y~v~VRa~~~~~~g~WSeWS~~~   93 (94)
T d3d85d3          38 LTFCVQVQGKSKREKKDRVF--TDKTS---ATVICRKNASISVRAQDRYYSSSWSEWASVP   93 (94)
T ss_dssp             EEEEEEEECC------CEEE--ESSSE---EEECCCSSCEEEEEEEESSSCCCCCCCEEEE
T ss_pred             EEEEEEEEECCCCccEEecc--ccceE---EEecCCCCEEEEEEEecCCCCCCCccCcCCC
Confidence            78999999988878876554  23333   3578999999999999999999999988653

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.4e-08  Score=88.28  Aligned_cols=75  Identities=28%  Similarity=0.438  Sum_probs=59.3

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEc-CccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA-SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~-~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ..+.++|+|+|.+|... +.+|.+|.|+++..++. |... .......+++.|.+|.+++.|.|+|.|.|..|.+.++
T Consensus        17 ~~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~g~s~~S   92 (108)
T d1v5ja_          17 VRTPRGVLLHWDPPELV-PKRLDGYVLEGRQGSQG-WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPS   92 (108)
T ss_dssp             EECSSSEEEEEECCSCC-SSCCCBEEEEEEETTCC-CEEEEEEECSSCCEEECCCCCTTSCEECCBEEEETTEEEEEC
T ss_pred             EEcCCEEEEEEEecccC-CCceeEEEEEeeeeeee-eeeccccccceeeeEEEEeccCCcEEEEEEEEEeCCCEeCCc
Confidence            34678999999998654 45899999999876544 4333 2233456789999999999999999999999988766

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.5e-08  Score=83.69  Aligned_cols=71  Identities=27%  Similarity=0.470  Sum_probs=59.9

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE  433 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~  433 (1101)
                      .++.+++.|+|.+|.    ..+.+|.|++...++..|...........++.|.+|.|++.|.|++.|.|..|.+.
T Consensus        11 ~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g~S~   81 (89)
T d1fnha3          11 ATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE   81 (89)
T ss_dssp             EEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSCEEE
T ss_pred             EecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCCEeC
Confidence            788999999999982    36899999999877777766555555667899999999999999999999888654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-07  Score=79.05  Aligned_cols=79  Identities=25%  Similarity=0.399  Sum_probs=64.6

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .+..+..|+.+.|.|.+ +.|.+.+.|+++|.++..+.  .+.+...+....|.|.++.+.|+|.|+|.|.|    ...+
T Consensus         8 ~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~   82 (90)
T d1x44a1           8 EDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSS   82 (90)
T ss_dssp             CCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEE
T ss_pred             CCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEE
Confidence            45688999999999998 56889999999999886544  46666667788999999999999999999966    3455


Q ss_pred             EEEEEe
Q psy8139         634 FLVTVT  639 (1101)
Q Consensus       634 ~~l~v~  639 (1101)
                      +.|+|.
T Consensus        83 a~l~V~   88 (90)
T d1x44a1          83 AKLSVD   88 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666664

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.8e-08  Score=82.96  Aligned_cols=72  Identities=18%  Similarity=0.198  Sum_probs=59.2

Q ss_pred             eEEccCCeEEEEE------EEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         462 TTALEDEKVEFTV------QVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       462 ~~v~~g~~v~L~C------~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      ..+..|....|.|      .+.+.|.|.|.|+++|..+...........+   .|.|.++...|+|.|+|.|.|..|...
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCEE
Confidence            3577899999999      5689999999999999999766554444333   799999999999999999999877544


Q ss_pred             E
Q psy8139         536 T  536 (1101)
Q Consensus       536 ~  536 (1101)
                      .
T Consensus        86 ~   86 (103)
T d1iray2          86 Y   86 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.4e-07  Score=79.69  Aligned_cols=82  Identities=24%  Similarity=0.306  Sum_probs=63.1

Q ss_pred             eEEeeCCEEEEEEEEeecCC-CeeEEEE-CCeecC-CCCceEEE-eecceEEEEEccCCCCCCeEEEEEEEeCCCCc-ee
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP-PTARWLH-NGEPLT-SGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGED-VA  632 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~-~~v~W~~-~g~~l~-~~~~~~~~-~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~  632 (1101)
                      ..+..|+++.|.|.+.|.|. +.+.|++ +|..+. ...++.+. ......+|.|.++...|.|.|+|.|.|..|.. ..
T Consensus        10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   89 (97)
T d1epfa1          10 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA   89 (97)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred             EEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEE
Confidence            47889999999999999984 7999998 455443 34445443 33456789999999999999999999999964 34


Q ss_pred             EEEEEEe
Q psy8139         633 SFLVTVT  639 (1101)
Q Consensus       633 s~~l~v~  639 (1101)
                      ++.|.|.
T Consensus        90 tv~l~V~   96 (97)
T d1epfa1          90 TVNVKIF   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666653

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.7e-07  Score=82.12  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=73.9

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR  422 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~  422 (1101)
                      .+|.||.++.+.   .......+.|+|.+|..+++..+..|.|+++..+...+..........+++.|.+|.+++.|.|+
T Consensus         3 Vk~dPP~nl~v~---~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~r   79 (105)
T d1erna2           3 VLLDAPVGLVAR---LADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFA   79 (105)
T ss_dssp             BCCCCCEEEEEE---ECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEE
T ss_pred             cccCCCCCCEEE---EecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEE
Confidence            456777766652   12245679999999877777788999999998766655544444455678999999999999999


Q ss_pred             EEEEecC--CCCCCCCCCcceEEE
Q psy8139         423 ITAENVV--GFSEPGPLSEPLTVT  444 (1101)
Q Consensus       423 c~A~n~~--G~~~~s~~s~~vtv~  444 (1101)
                      |+|.+..  +.+.+|++|.++.+.
T Consensus        80 VRar~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          80 VRARMAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             EEEEECSSSCCBCCCCCCCCEEEE
T ss_pred             EEEEECCCCCCCCCCCCCCCEEee
Confidence            9998653  556788898888775

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8e-08  Score=83.67  Aligned_cols=95  Identities=19%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCc--CeeEEEEEEEecCCCceEEcCc--cccccceEEEcCccCCccEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS--PVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~--~i~~Y~v~~~~~~~~~w~~~~~--~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      |.+|..+.+   . .++.++++|+|.+|...++.  ....|.|++...+...|.....  .......+.|.+|.|++.|.
T Consensus         2 P~~P~~l~v---~-~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   77 (101)
T d1iarb2           2 PRAPGNLTV---H-TNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYR   77 (101)
T ss_dssp             CCCCEEEEE---C-----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEE
T ss_pred             cccCCcCEE---E-EEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEE
Confidence            555555555   3 67789999999998654443  2346999998876665543321  12334578899999999999


Q ss_pred             EEEEEEecCCCCCCCCCCcceEE
Q psy8139         421 FRITAENVVGFSEPGPLSEPLTV  443 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s~~s~~vtv  443 (1101)
                      |+|+|.|..|.|.+|++|..++.
T Consensus        78 ~rVrA~~~~g~g~wSewS~~v~~  100 (101)
T d1iarb2          78 ARVRAWAQAYNTTWSEWSPSTKW  100 (101)
T ss_dssp             EEEEEECGGGTCCCCCCCCCEEE
T ss_pred             EEEEEEcCCCCCCCcCCCCCEEE
Confidence            99999999999999988877653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=8.1e-08  Score=85.14  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=62.9

Q ss_pred             EEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCce--------EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         559 LFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRY--------EITHTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~--------~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      .+..|+.+.|.|.+. |.|.+.+.|++++..+......        ..........|.|.+++..|.|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            578899999999985 8999999999999887543221        1222334567999999999999999999999998


Q ss_pred             cee--EEEEEEecC
Q psy8139         630 DVA--SFLVTVTDR  641 (1101)
Q Consensus       630 ~~~--s~~l~v~~~  641 (1101)
                      ...  ...+.|.+.
T Consensus        93 ~~~s~~v~l~V~~l  106 (110)
T d1f97a2          93 AMRSEAAHMDAVEL  106 (110)
T ss_dssp             CEECCCEEEEEESS
T ss_pred             EEEEEEEEEEEEec
Confidence            754  455666543

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.5e-08  Score=85.50  Aligned_cols=40  Identities=13%  Similarity=-0.119  Sum_probs=34.2

Q ss_pred             cCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEE
Q psy8139         742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT  781 (1101)
Q Consensus       742 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t  781 (1101)
                      .....+++.+|.+++.|.|||+|.|..|.|++++...++.
T Consensus        54 ~~~~~~~~~~l~~~~~Y~fRV~A~n~~g~S~ws~s~~f~~   93 (98)
T d1fyhb1          54 HHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAV   93 (98)
T ss_dssp             SSEEECGGGCCSTTSCEEEEEEEEETTEECCCEECCCBCH
T ss_pred             cceeeeEecccCCCCEEEEEEEEEcCCcccCCccCCCcEE
Confidence            4556778899999999999999999999999987776553

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-07  Score=80.58  Aligned_cols=73  Identities=23%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .++.+++.|+|.+|.    ..+.+|.|++...++..+........+..++.|.+|.|++.|.+++.|.|..|.+.++
T Consensus         7 ~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~~   79 (91)
T d1fnaa_           7 AATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS   79 (91)
T ss_dssp             EECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSCS
T ss_pred             EeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCCCc
Confidence            678999999999982    3688999999887666554433334566899999999999999999999999988665

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-07  Score=82.96  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             CeEEeeCCEEEEEEEEeecC-CCeeEEEECCeecCC--C-CceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTS--G-GRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~--~-~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      ...+..|+++.|.|.+.|.| .|.++|++++..+..  . ........  .....|.|.++...|.|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          12 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence            34788999999999999998 589999998766532  1 11222221  124569999999999999999999999975


Q ss_pred             -eeEEEEEEec
Q psy8139         631 -VASFLVTVTD  640 (1101)
Q Consensus       631 -~~s~~l~v~~  640 (1101)
                       +.+..+.|.+
T Consensus        92 ~s~~~~l~V~e  102 (104)
T d2aw2a1          92 ESHSTTLYVTD  102 (104)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EEEEEEEEEEE
Confidence             4467777764

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=8.7e-08  Score=85.35  Aligned_cols=85  Identities=21%  Similarity=0.222  Sum_probs=64.5

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      ..|++|..+.+.  .+.+++.|+|.+|..+|+ +|.+|.|+++..+...|...  .......++|.+|.+++.|.|+|.|
T Consensus        19 ~vP~~P~~~~~~--~~~~si~v~W~~p~~~~g-~i~~Y~i~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A   93 (113)
T d1x5ia1          19 RVPEVPSSLHVR--PLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIK--VDYKQRYYTIENLDPSSHYVITLKA   93 (113)
T ss_dssp             SCCCSCSEEEEE--EETTEEEEEEECCSCTTB-CCCEEEEEECSSCGGGEEEE--CCTTCCEEEECSCCSSCEECCEEEE
T ss_pred             CCCCCCEeeeee--eCCCEEEEEEEccccCCc-cEEEEEEEeeeccccceeee--eeCCccEEEEeccccCcEEEEEEEE
Confidence            345555555433  356899999999875554 89999999987665555443  2245678999999999999999999


Q ss_pred             EecCCCCCCC
Q psy8139         426 ENVVGFSEPG  435 (1101)
Q Consensus       426 ~n~~G~~~~s  435 (1101)
                      .|..|.+.+.
T Consensus        94 ~n~~G~g~~~  103 (113)
T d1x5ia1          94 FNNVGEGIPL  103 (113)
T ss_dssp             ECSSCBCCCC
T ss_pred             ECCCcCCCCe
Confidence            9999988654

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-07  Score=83.29  Aligned_cols=75  Identities=20%  Similarity=0.376  Sum_probs=58.6

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc---eEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      ..+.++|.|+|.+|...++ +|.+|.+.+.......   |.... ......++.|.+|.|++.|.|+|.|.|..|.|.+|
T Consensus        24 ~~~~~sv~v~W~~P~~~~g-~i~~Y~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  101 (111)
T d1x5ka1          24 EGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEP-VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMS  101 (111)
T ss_dssp             SSCTTCEEEEEECCSCCSS-CCCEEEEEEESCSSSCTTTSEEEE-ESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCC
T ss_pred             cCCCCEEEEEEEccccCCC-ceeeeEEeeeecCCCCcceeEEEE-eCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCC
Confidence            4677899999999976554 8999999997654432   33322 22455689999999999999999999999988765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.9e-07  Score=82.18  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE---e---e------cceEEEEEccCCCCCCe-EEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT---H---T------DRYLNLRISDARRADRG-EYQAHGV  624 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~---~---~------~~~~sl~i~~l~~~~~y-~y~c~A~  624 (1101)
                      +.+..|+.+.|.|.+.|.|.|.+.|.++|..+.........   .   .      ...+.|.|.++++.|.| .|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            35667999999999999999999999999988644322111   0   0      11457999999999999 5999999


Q ss_pred             eCCCCceeEEEEE
Q psy8139         625 NSLGEDVASFLVT  637 (1101)
Q Consensus       625 N~~G~~~~s~~l~  637 (1101)
                      |..|..+....|.
T Consensus        92 N~~G~~~~~i~L~  104 (107)
T d1iray3          92 NTHGIDAAYIQLI  104 (107)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE
Confidence            9999887776664

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-08  Score=87.99  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             eEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEE-------eecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         558 LLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEIT-------HTDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~-------~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      ..+..|+.+.|.|.+. |.|.+.+.|++++..+.....+...       .......|.|.++...|.|.|+|.|.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            3678899999999984 8999999999999887654332211       1223467899999999999999999999998


Q ss_pred             ceeEEEE
Q psy8139         630 DVASFLV  636 (1101)
Q Consensus       630 ~~~s~~l  636 (1101)
                      ...+..+
T Consensus        92 ~~~s~~v   98 (104)
T d1nbqa2          92 PMTSNAV   98 (104)
T ss_dssp             CEECCCB
T ss_pred             eEEEEEE
Confidence            7655443

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.8e-07  Score=80.73  Aligned_cols=81  Identities=26%  Similarity=0.400  Sum_probs=64.7

Q ss_pred             CCCeeEEEEeCCCC---CCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCC
Q psy8139         361 DRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  437 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~---~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~  437 (1101)
                      ...+|.|+|.+|..   +++..+..|.|+++..++..|.....  .....+.|.+|.+++.|.|+|+|.+.. .+.+|.+
T Consensus        19 ~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y~frVRa~~~~-~g~ws~w   95 (106)
T d1axib2          19 IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRN-SGNYGEF   95 (106)
T ss_dssp             SEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETT-SSCCCCC
T ss_pred             ccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEEEEEEEEEECC-CCCCCCC
Confidence            35689999999864   33446789999999988888987653  456789999999999999999999864 4566777


Q ss_pred             CcceEEE
Q psy8139         438 SEPLTVT  444 (1101)
Q Consensus       438 s~~vtv~  444 (1101)
                      |..+.+.
T Consensus        96 S~~v~v~  102 (106)
T d1axib2          96 SEVLYVT  102 (106)
T ss_dssp             CCCEEEC
T ss_pred             CCCEEEE
Confidence            7877765

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.9e-07  Score=81.28  Aligned_cols=80  Identities=19%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      |.+|..|.+. .++.+++.|+|.+|.    +.+.+|.|.+...++..|...  ......+++|.+|.|++.|.|++.|.+
T Consensus         1 P~~P~~l~~~-~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~a~~   73 (102)
T d2cuha1           1 PDGPTQLRAL-NLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAE--TPGSAVDYPLHDLVLHTNYTATVRGLR   73 (102)
T ss_dssp             CSSCEEEECC-CCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEE--EETTCSEEEECSCCSSSEEEEEEEEEE
T ss_pred             CcCCCccEEE-EeCCCEEEEEEEeee----ccceeeEEEEEeccccceeee--eeeeeeeEEEccEEeeEEEEEEEEEEe
Confidence            4556666665 889999999999982    368899999988766655543  234567899999999999999999999


Q ss_pred             cCCCCCC
Q psy8139         428 VVGFSEP  434 (1101)
Q Consensus       428 ~~G~~~~  434 (1101)
                      ..|.+.+
T Consensus        74 ~~~~s~~   80 (102)
T d2cuha1          74 GPNLTSP   80 (102)
T ss_dssp             TTEECCC
T ss_pred             CCCCcCC
Confidence            8887654

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-07  Score=80.75  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=61.7

Q ss_pred             CcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCC
Q psy8139         351 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG  430 (1101)
Q Consensus       351 p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G  430 (1101)
                      |..+.+. .++.+++.|+|.+|.   +..+.+|.|+++..++..+..........+.++|.+|.|++.|.|+|.|.+..|
T Consensus         4 P~~l~~~-~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           4 PTDLRFT-NIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CEEEEEE-SCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCceEEE-EeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            4444443 788999999999983   347899999998876655444333334667899999999999999999999988


Q ss_pred             CCCC
Q psy8139         431 FSEP  434 (1101)
Q Consensus       431 ~~~~  434 (1101)
                      .+.+
T Consensus        80 ~S~p   83 (91)
T d1fnfa2          80 ESTP   83 (91)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7643

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.3e-07  Score=80.66  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=61.5

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      ++|.++.+   . .+++++|.|+|.+|.    ..+.+|.|++.......+.... .......+.|.+|.|++.|.|++.|
T Consensus         3 ~aP~n~~~---~-~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A   73 (92)
T d1qg3a1           3 GAPQNPNA---K-AAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHL-LDSKVPSVELTNLYPYCDYEMKVCA   73 (92)
T ss_dssp             CCCEEEEE---E-ECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEE-EEESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CcCCCCEE---E-EccCCEEEEEEEecC----CCccceEEeeeeccccccEEEE-ecCCccEEEECCCCCCcEEEEEEEE
Confidence            45555555   2 678999999999982    3578999999876554432211 2245578999999999999999999


Q ss_pred             EecCCCCCCC
Q psy8139         426 ENVVGFSEPG  435 (1101)
Q Consensus       426 ~n~~G~~~~s  435 (1101)
                      .|..|.+.+|
T Consensus        74 ~n~~G~g~~S   83 (92)
T d1qg3a1          74 YGAQGEGPYS   83 (92)
T ss_dssp             ECSSCBCCCC
T ss_pred             EeCCcCcCCC
Confidence            9999988665

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.48  E-value=1.5e-07  Score=79.44  Aligned_cols=71  Identities=24%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  434 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~  434 (1101)
                      .++.+++.|+|.+|    ...+.+|.|++...+...|..... .....++.|.||.|++.|.|++.|.|..|.+.+
T Consensus        11 ~v~~~s~~l~W~~~----~~~~~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p   81 (88)
T d1qr4a2          11 DITENSATVSWTPP----RSRVDSYRVSYVPITGGTPNVVTV-DGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP   81 (88)
T ss_dssp             SCCSSCEEEEECCC----SSCCSEEEEEEEETTCCCCEEEEE-ETTCCEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             EecCCEEEEEEEcc----cEeeceEEEEEEeccCCceEEEEe-cCCccEEEECCCCCCCEEEEEEEEEeCCCCcCC
Confidence            88899999999998    237889999999877776655432 345678999999999999999999999997754

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.6e-08  Score=86.38  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             CceeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139         459 LHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI  535 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~  535 (1101)
                      |..+.+.+|+.+.|.|.+. +.|.+.|.|+++|..+..  .....+...++  +|.|.++...|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEE
Confidence            4456678899999999885 789999999998864432  22223333343  899999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy8139         536 TKARLRLEA  544 (1101)
Q Consensus       536 ~s~~l~V~~  544 (1101)
                      .++.|.|..
T Consensus        87 ~~~~L~V~~   95 (101)
T d1iray1          87 IKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            999998865

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.6e-07  Score=79.17  Aligned_cols=76  Identities=20%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             EEeeCCEEEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLV  636 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l  636 (1101)
                      .+.+|+++.|.|.+.+. +...+.|+++|..+....        ....|.|.+++..|+|.|+|.|.|..|.. +..+.+
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i   82 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI   82 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEE
Confidence            67889999999999765 566999999998876432        24568999999999999999999987754 456778


Q ss_pred             EEecCC
Q psy8139         637 TVTDRP  642 (1101)
Q Consensus       637 ~v~~~P  642 (1101)
                      +|..+|
T Consensus        83 ~V~~~P   88 (89)
T d1f2qa2          83 TVIKAP   88 (89)
T ss_dssp             EEECSC
T ss_pred             EEEeCC
Confidence            888766

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5e-08  Score=83.80  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      ||++|..+.|. ..+.++++|+|.+|. +++.+ .+|.|.++..++..|............+.+.+|.+++.|.|+|.|.
T Consensus         3 PP~~P~n~~~~-~~~~~si~~~W~p~~-~~~~~-~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           3 PPEKPKNLSCI-VNEGKKMRCEWDGGR-ETHLE-TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCEEEEEE-EETTSCCEEEEECCS-CCSSC-CEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             CcCCCeeeEEE-EccCCEEEEEEeCcc-cCCCc-eEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            46666777776 778899999999984 55544 6999999887666555554444555678889999999999999999


Q ss_pred             ecCCCCC
Q psy8139         427 NVVGFSE  433 (1101)
Q Consensus       427 n~~G~~~  433 (1101)
                      |..|.+.
T Consensus        80 N~~G~s~   86 (95)
T d1bqua1          80 NALGKVT   86 (95)
T ss_dssp             ETTEEEE
T ss_pred             eCCcccc
Confidence            9999875

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-08  Score=91.90  Aligned_cols=95  Identities=24%  Similarity=0.313  Sum_probs=72.8

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEecc-CCCeEEEEECCEEeecC--CcEEEEe----cCCeeEEEEeecCCCC-CEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSS--RRQRIVT----DNDISTLIIHQAALMD-EGE  522 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~~~~~--~~~~~~~----~~~~~~l~I~~l~~~d-~g~  522 (1101)
                      .||.+. .+....+..|+.+.|.|.+.|. |.+.+.|++++..+...  .++.+..    .+..+.|.|.++...| +|.
T Consensus         6 ~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           6 GPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred             cCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeE
Confidence            556554 5667788999999999999985 55689999998877543  3333322    1223579999999998 699


Q ss_pred             EEEEEEeCCCceEEEEEEeeccCC
Q psy8139         523 IKCTATNRAGHSITKARLRLEAPP  546 (1101)
Q Consensus       523 Y~C~a~n~~g~~~~s~~l~V~~~p  546 (1101)
                      |+|.|.|..|.....+.|.|..++
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEEECCCeEEEEEEEEEECCC
Confidence            999999999999888888887543

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.47  E-value=1.5e-07  Score=79.30  Aligned_cols=78  Identities=24%  Similarity=0.389  Sum_probs=56.6

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      +|+.|..|.+. .++.++|+|+|.+|..++  .+.+|.|.+..   ..+.     ....+++++.+|.|++.|.|+|.|.
T Consensus         3 AP~~P~~l~~~-~~~~~sv~lsW~~p~~~~--~i~~Y~i~~~~---~~~~-----~~~~t~~~~~~L~p~t~Y~~~V~A~   71 (88)
T d1k85a_           3 APTAPTNLAST-AQTTSSITLSWTASTDNV--GVTGYDVYNGT---ALAT-----TVTGTTATISGLAADTSYTFTVKAK   71 (88)
T ss_dssp             SCCCCEEEEEE-EECSSCEEEEEECCSCCS--SEEEEEEEESS---SEEE-----EESSSEEEECCCCSSCEEEEEEEEE
T ss_pred             CcCCCCCcEEE-EecCCEEEEEEeCCCCCC--CEEEEEEEccc---eEEE-----ecCCCEEEECCCCCCCEEEEEEEEE
Confidence            34455554443 778999999999985433  58899997632   2222     1345789999999999999999999


Q ss_pred             ecCC-CCCCC
Q psy8139         427 NVVG-FSEPG  435 (1101)
Q Consensus       427 n~~G-~~~~s  435 (1101)
                      |..| .+.+|
T Consensus        72 n~~G~~s~~S   81 (88)
T d1k85a_          72 DAAGNVSAAS   81 (88)
T ss_dssp             ETTTEECCCC
T ss_pred             ECCCCcCCCC
Confidence            9998 44443

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=80.75  Aligned_cols=80  Identities=24%  Similarity=0.303  Sum_probs=63.7

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      +|..+.+    .+++.++++|+|.+|.    ..+.+|.+.+.......+...........+++|.+|.|++.|.|++.|.
T Consensus         4 ~P~~l~v----~~vt~~sv~l~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   75 (94)
T d1j8ka_           4 RPKGLAF----TDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVAL   75 (94)
T ss_dssp             CCCCCEE----EEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEEC
T ss_pred             CCCCCEE----EEecCCEEEEEEeCCC----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            4555544    3788999999999983    3678999999887776666554445567889999999999999999999


Q ss_pred             ecCCCCCC
Q psy8139         427 NVVGFSEP  434 (1101)
Q Consensus       427 n~~G~~~~  434 (1101)
                      |..|.+.+
T Consensus        76 ~~~g~S~p   83 (94)
T d1j8ka_          76 HDDMESQP   83 (94)
T ss_dssp             SSSCCCCC
T ss_pred             eCCCCcCC
Confidence            99887654

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=1e-07  Score=81.36  Aligned_cols=83  Identities=20%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      +.+|..+.+   . .++.++++|+|.+|    ...+.+|.|.+...++..|..........++++|.+|.|++.|.+++.
T Consensus         4 ~~~P~~l~v---~-~v~~~si~v~W~~p----~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~   75 (93)
T d1tdqa1           4 IDGPTQILV---R-DVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSIS   75 (93)
T ss_dssp             SCCCEEEEE---E-EECSSCEEEEEECC----SSCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCcCCCCEE---E-EeCCCEEEEEEEcc----ccCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEE
Confidence            344555554   3 78899999999998    337889999999877665543333445668899999999999999999


Q ss_pred             EEecCCCCCCC
Q psy8139         425 AENVVGFSEPG  435 (1101)
Q Consensus       425 A~n~~G~~~~s  435 (1101)
                      |.|..|.+.++
T Consensus        76 a~~~~g~s~~~   86 (93)
T d1tdqa1          76 AVRGTNESDAS   86 (93)
T ss_dssp             EEETTEECCCE
T ss_pred             EEeCCCCcCCE
Confidence            99999987543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.1e-08  Score=79.63  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=57.8

Q ss_pred             CeeeecCceeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      |.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+...          ...|.|.++..+|+|.|.|.|.|..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCChhhCCcEEEEecCCC
Confidence            5667778788899999999999999998874 5678888776432          2379999999999999999997764


Q ss_pred             CceEEEEEEee
Q psy8139         532 GHSITKARLRL  542 (1101)
Q Consensus       532 g~~~~s~~l~V  542 (1101)
                      +..  .+.|.|
T Consensus        72 ~S~--~v~l~V   80 (82)
T d1f2qa1          72 ESE--PVYLEV   80 (82)
T ss_dssp             CCC--CEEEEE
T ss_pred             Ccc--cEEEEE
Confidence            432  344544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.46  E-value=1.2e-07  Score=79.69  Aligned_cols=74  Identities=22%  Similarity=0.283  Sum_probs=59.4

Q ss_pred             EEeeCCEEEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLV  636 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l  636 (1101)
                      .+.+|++++|.|.+.+. |.+.+.|+++|..+..        ......|.|.++...|+|.|+|.|.|..|.. +..+.|
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l   82 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTI   82 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeecccccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEE
Confidence            57789999999999754 6679999999976542        2235679999999999999999999998864 446777


Q ss_pred             EEec
Q psy8139         637 TVTD  640 (1101)
Q Consensus       637 ~v~~  640 (1101)
                      .|..
T Consensus        83 ~V~~   86 (88)
T d2fcba2          83 TVQA   86 (88)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            7764

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-07  Score=83.08  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCCCC-CCCcccCCCCCCCCCeeEEEEeCCCC-CCCcCeeEEEEEEEecCCCceEEcC----ccccccceEEEcCccCC
Q psy8139         343 KPPGPP-GKPQLLPDSPSLDRDVFTIRWEPPEY-DGGSPVLGYLVEHRRTGSPYWVRAS----PHMVEDTELMVSGLEPG  416 (1101)
Q Consensus       343 ~~p~~P-~~p~~l~~~~~~~~~sv~l~W~~p~~-~g~~~i~~Y~v~~~~~~~~~w~~~~----~~~~~~~~l~i~~L~p~  416 (1101)
                      +.+++| ++|..+.+. ..+.+++.|+|.+|.. +.+.++.+|.|.++..+...+....    .......++.|.+|.|+
T Consensus         3 T~~~~P~~pP~~v~v~-~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   81 (109)
T d1va9a1           3 TEEAAPDGPPMDVTLQ-PVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKF   81 (109)
T ss_dssp             SSCCCCSSCCEEEEEE-ECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSS
T ss_pred             CcCCCCCCCCcCcEEE-EecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcc
Confidence            444444 355555544 7889999999998753 3345889999999876554432211    12234568999999999


Q ss_pred             ccEEEEEEEEecCCCCCCC
Q psy8139         417 WRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       417 d~y~y~c~A~n~~G~~~~s  435 (1101)
                      +.|.|++.|.|..|.|.+|
T Consensus        82 t~Y~~~V~a~n~~G~g~~S  100 (109)
T d1va9a1          82 AQYGVVVQAFNRAGTGPSS  100 (109)
T ss_dssp             CCEEEEEEEEETTEECCCC
T ss_pred             eEEEEEEEEEcCCcCCCCC
Confidence            9999999999999987665

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.9e-07  Score=78.70  Aligned_cols=89  Identities=19%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      |.+|.++.+   . .++.++++|+|.+|.   ...+..|.|++...+...|.....  .....++|.+|.|++.|.|+|+
T Consensus         3 P~~P~nl~v---~-~~~~~~v~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~frVR   73 (95)
T d2b5ic1           3 PWAPENLTL---H-KLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVR   73 (95)
T ss_dssp             CCCCEEEEE---E-EEETTEEEEEEECSS---CSTTCEEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEE
T ss_pred             CcCCCCCEE---E-EEeCCEEEEEECCCC---CceeEEEEEEEEcCCCceeeEeee--cccceeEcCCCCCCCEEEEEEE
Confidence            555555555   3 678899999999984   235789999999988888876533  3457899999999999999999


Q ss_pred             EEecCC---CCCCCCCCcceE
Q psy8139         425 AENVVG---FSEPGPLSEPLT  442 (1101)
Q Consensus       425 A~n~~G---~~~~s~~s~~vt  442 (1101)
                      |.+..+   .+.+|++|.+++
T Consensus        74 a~~~~~~~~~g~WSeWS~pv~   94 (95)
T d2b5ic1          74 SRFNPLCGSAQHWSEWSHPIH   94 (95)
T ss_dssp             EECCSSSCCCCCCCCCCCCEE
T ss_pred             EeeCCCCCCCCCccCCCCcee
Confidence            987654   345677776664

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.8e-07  Score=86.50  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=68.6

Q ss_pred             eccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCc--------CeeEEEEEEEecCCCc-eEEcCccccccceEEE
Q psy8139         340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS--------PVLGYLVEHRRTGSPY-WVRASPHMVEDTELMV  410 (1101)
Q Consensus       340 ~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~--------~i~~Y~v~~~~~~~~~-w~~~~~~~~~~~~l~i  410 (1101)
                      .....|..|.+|.+    .+++.+++.|+|.+|...++.        .+..|.+.+...+... |..+  ......+++|
T Consensus        13 ~~~~~~~~~~~P~V----~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~--~~~~~~~~~i   86 (137)
T d1wk0a_          13 AFEALLSNIVKPVA----SDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSV--YVGEETNITL   86 (137)
T ss_dssp             HHHHHTTCCCCCEE----ESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE--EEESCSEEEE
T ss_pred             EeccCCCCCCCCEE----EEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEE--EecCccEEEE
Confidence            34455777788877    478899999999998654442        4668998887654433 3322  2235678999


Q ss_pred             cCccCCccEEEEEEEEecCCCCCCCCC
Q psy8139         411 SGLEPGWRYQFRITAENVVGFSEPGPL  437 (1101)
Q Consensus       411 ~~L~p~d~y~y~c~A~n~~G~~~~s~~  437 (1101)
                      .+|.|++.|.|+|.|.|..|.+.+|..
T Consensus        87 ~~L~P~t~Y~f~V~A~n~~G~g~~S~~  113 (137)
T d1wk0a_          87 NDLKPAMDYHAKVQAEYNSIKGTPSEA  113 (137)
T ss_dssp             CSCCTTCEECEEEEEEETTEECCCCCC
T ss_pred             CCCCCCcEEEEEEEEEcCCcccCCCCC
Confidence            999999999999999999998877643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.43  E-value=5.8e-08  Score=82.01  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=68.2

Q ss_pred             CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .++.+.+|+++.|.|.. +.|.|.+.|+++|.++..+.++.+...++...|.|.++.+.|+|.|+|.|.|..    .++.
T Consensus         9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~   83 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAAN   83 (89)
T ss_dssp             CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEE
T ss_pred             cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEE
Confidence            45688999999999997 578899999999999998889999888888999999999999999999986643    3455


Q ss_pred             EEEe
Q psy8139         636 VTVT  639 (1101)
Q Consensus       636 l~v~  639 (1101)
                      |.|.
T Consensus        84 l~V~   87 (89)
T d1tiua_          84 LKVK   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.2e-07  Score=80.49  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             CcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCC
Q psy8139         351 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG  430 (1101)
Q Consensus       351 p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G  430 (1101)
                      |..+.+. .++.++++|+|.+|.    ..+.+|.+++....+..+...........+++|.+|.|++.|.|++.|.|..|
T Consensus         3 P~~l~~~-~v~~~si~l~W~~p~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           3 PTDLKFT-QVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CEEEEEE-EECSSCEEEEEECCS----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCEEEE-EecCCEEEEEEEccc----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            3444444 889999999999983    36778999998766655443333445668899999999999999999999999


Q ss_pred             CCCCC
Q psy8139         431 FSEPG  435 (1101)
Q Consensus       431 ~~~~s  435 (1101)
                      .+.++
T Consensus        78 ~s~~~   82 (90)
T d1fnha1          78 TSRPA   82 (90)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            87654

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.1e-07  Score=78.34  Aligned_cols=97  Identities=21%  Similarity=0.362  Sum_probs=64.9

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCC---CCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~---~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      +|+||.++.+-....+.+.+++.|+|.+|..   .++..+..|.+++...+...|....  ......++|.+|.+++.|.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~   79 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHF--AGQQTEFKILSLHPGQKYL   79 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEE--EETCSEEEECC--CCCEEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeec--cccccEEEECCCCCCCEEE
Confidence            4677766654211125567889999999853   3344677899999888777776543  2456789999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCcceEEE
Q psy8139         421 FRITAENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s~~s~~vtv~  444 (1101)
                      |+|+|.|..|.  +|.+|..+.+.
T Consensus        80 ~rVrA~n~~G~--ws~wS~~~~v~  101 (104)
T d3d48r2          80 VQVRCKPDHGY--WSAWSPATFIQ  101 (104)
T ss_dssp             EEEEEEESSSC--CCCCCCCEEEE
T ss_pred             EEEEEEeCCCC--CCCCcCCEEEE
Confidence            99999999875  34445656654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.7e-07  Score=79.42  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=60.2

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC-ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG-RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+.+|+++.|.|.+.| |.|.+.|+++|..+.... .+.+..   .++|.|.++.+.|+|.|+|.|.|..|.......+
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~---~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMG---RKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTT---TTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecce---eeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            36788999999999988 678999999998876543 333222   3469999999999999999999999876655444


Q ss_pred             E
Q psy8139         637 T  637 (1101)
Q Consensus       637 ~  637 (1101)
                      .
T Consensus        83 ~   83 (92)
T d1olza1          83 A   83 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.1e-07  Score=79.42  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             EEeeCCEEEEEE------EEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139         559 LFEMGEIIKLKV------SMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV  631 (1101)
Q Consensus       559 ~v~~g~~~~l~c------~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~  631 (1101)
                      .+..|....|.|      .+.+.|.|.+.|+++|.++..+.......   ...|.|.++...|+|.|+|.|.|..|...
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE---TTEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec---CCEEEEcccccccCcEEEEEEEECcCCEE
Confidence            567799999999      56788999999999999997655443332   34799999999999999999999887543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.1e-08  Score=89.88  Aligned_cols=99  Identities=26%  Similarity=0.373  Sum_probs=74.1

Q ss_pred             EeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CCCeeEEEECCeecCCCC--ceEEEee----cceEEEEEccCC
Q psy8139         540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGG--RYEITHT----DRYLNLRISDAR  612 (1101)
Q Consensus       540 l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~l~~~~--~~~~~~~----~~~~sl~i~~l~  612 (1101)
                      |.|..||.+..+.    ...+..|+.+.|.|.+.+. |.+.+.|++++..+..+.  ++.+...    +....|.|.++.
T Consensus         2 L~V~~Pp~i~~~~----~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~   77 (115)
T d2crya1           2 LTVNGPPIISSTQ----TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIV   77 (115)
T ss_dssp             CCCCSSCCEEEEC----CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCC
T ss_pred             eEEecCCEEecCC----CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccc
Confidence            5677888775332    2356789999999999985 466899999988876432  2332221    123579999999


Q ss_pred             CCC-CeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         613 RAD-RGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       613 ~~~-~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      ..| .|.|+|.|.|..|..+..+.|.|...+
T Consensus        78 ~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          78 RADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             hhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            998 699999999999999888888887543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.5e-07  Score=76.27  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=63.1

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      ...+..|+.+.|.|.+ +.|.+.+.|+++|..+..+ ..+.+...++...|.|.++...|.|.|+|.|.|.    ..++.
T Consensus        15 ~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~s~~   89 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE----KCSTE   89 (94)
T ss_dssp             EEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE----EECCE
T ss_pred             CEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE----EEEEE
Confidence            3468899999999998 4588999999999998754 4567777777889999999999999999999663    34445


Q ss_pred             EEEe
Q psy8139         636 VTVT  639 (1101)
Q Consensus       636 l~v~  639 (1101)
                      |.|.
T Consensus        90 l~V~   93 (94)
T d1pd6a_          90 LFVK   93 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=3.2e-07  Score=79.72  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCCCcccCCCCCCCCCeeEEEEeCC-CCCCCcCeeEEEEEEEecCCCceEEcC--ccccccceEEEcCccCCccEEEEEE
Q psy8139         348 PGKPQLLPDSPSLDRDVFTIRWEPP-EYDGGSPVLGYLVEHRRTGSPYWVRAS--PHMVEDTELMVSGLEPGWRYQFRIT  424 (1101)
Q Consensus       348 P~~p~~l~~~~~~~~~sv~l~W~~p-~~~g~~~i~~Y~v~~~~~~~~~w~~~~--~~~~~~~~l~i~~L~p~d~y~y~c~  424 (1101)
                      +.+|..+.+. .++.++|+|+|.+| ....+..+.+|.|.++..++..+....  .......++.|.+|.+++.|.|++.
T Consensus         2 ~~~P~~~~~~-~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           2 VAGPYITFTD-AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CSCCEEEEEE-CSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCcccEEE-EEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            4445554444 78899999999864 345556899999999876554322111  1223456799999999999999999


Q ss_pred             EEecCCCCCCC
Q psy8139         425 AENVVGFSEPG  435 (1101)
Q Consensus       425 A~n~~G~~~~s  435 (1101)
                      |.|..|.+.+|
T Consensus        81 a~n~~G~s~~S   91 (101)
T d1x4ya1          81 CFNEGGESEFS   91 (101)
T ss_dssp             EECTTCCCCCC
T ss_pred             EEcCCCCCCCC
Confidence            99999988765

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2.2e-07  Score=77.88  Aligned_cols=71  Identities=20%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .++.++++|+|.+|    ...+.+|.|+++..++..+...  .....+++.|.+|.|++.|.|++.|.|..|.+.++
T Consensus        11 ~~~~~s~~l~W~~p----~~~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p~   81 (86)
T d1tdqa3          11 ASSETSISLIWTKA----SGPIDHYRITFTPSSGISSEVT--VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES   81 (86)
T ss_dssp             EECSSCEEEEEECC----CSCCSEEEEEEECSSSCCEEEE--EESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             EecCCEEEEEEeCC----CCCccceEEEEecccccceEEE--eCCCccEEEECCCccccEEEEEEEEEcCCCEECCE
Confidence            78899999999998    2368899999987765544332  22456789999999999999999999998877654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.5e-07  Score=79.87  Aligned_cols=78  Identities=14%  Similarity=0.106  Sum_probs=60.1

Q ss_pred             CCccccCCCCCCCeEEeeCCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +|.+..++   ..+.+..|+++.|.|.+.+.|. ++++|++++..+....+....   ...+|.|.++...|+|.|+|.|
T Consensus         6 ~P~~~~~~---~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           6 CPAQEVAR---GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG---MGRRLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             CCCCCCCT---TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE---ESSEEEECSCCGGGCEEEEEES
T ss_pred             CCcEEeCC---CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec---CCCEEEECCCChhcCEEEEEEE
Confidence            45554433   3567888999999999998765 689999999888765543332   2457999999999999999999


Q ss_pred             EeCCC
Q psy8139         624 VNSLG  628 (1101)
Q Consensus       624 ~N~~G  628 (1101)
                      .|..+
T Consensus        80 ~n~~~   84 (93)
T d1n26a1          80 AGRPA   84 (93)
T ss_dssp             SSSCS
T ss_pred             CCccc
Confidence            77544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.7e-07  Score=81.11  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             CeEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         557 GLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .+....|+.+.|.|.+. +.|.+.+.|+++|..+...  ....+...  ..+|.|.++...|.|.|+|.|.|..|....+
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE--TTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc--CCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            34677799999999885 6789999999988665422  22222222  4579999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy8139         634 FLVTVTDR  641 (1101)
Q Consensus       634 ~~l~v~~~  641 (1101)
                      +.|.|...
T Consensus        89 ~~L~V~~~   96 (101)
T d1iray1          89 ISAKFVEN   96 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99998753

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.2e-08  Score=85.53  Aligned_cols=87  Identities=24%  Similarity=0.364  Sum_probs=65.1

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEc--CccccccceEEEcCccCCccEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA--SPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~--~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      .+|++|+++..    ..+++++|.|+|.+|..++| .|.+|.|+++..+...+...  .........+.+.+|.+++ |.
T Consensus         3 ~~~d~P~~v~~----~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~   76 (102)
T d2dtge1           3 KADDIVGPVTH----EIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YS   76 (102)
T ss_dssp             CCCCCCCCCCC----CSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-EC
T ss_pred             CCCCCCCCCEE----EEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EE
Confidence            56777777655    36788999999999976655 79999999986554433221  1222344568999999985 99


Q ss_pred             EEEEEEecCCCCCCC
Q psy8139         421 FRITAENVVGFSEPG  435 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s  435 (1101)
                      |++.|.|..|.|.+|
T Consensus        77 ~rV~A~n~~G~g~~S   91 (102)
T d2dtge1          77 VRIRATSLAGNGSWT   91 (102)
T ss_dssp             CCCCEEETTBCCCCC
T ss_pred             EEEEEEcCCccCCCC
Confidence            999999999988765

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.7e-07  Score=84.84  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceE-------E-cC-------ccccccceE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV-------R-AS-------PHMVEDTEL  408 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~-------~-~~-------~~~~~~~~l  408 (1101)
                      ...+|+.|..+.+.  .+.+++.|+|.+|..++| +|++|.|+|...+...+.       . ..       ........+
T Consensus         4 ~~~~P~aP~~v~v~--~~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T d1wfta_           4 GSSGPGAPSTVRIS--KNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLAN   80 (123)
T ss_dssp             SSSCCCCCEEEEEE--ECSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTT
T ss_pred             CCCCCcCCcccEEE--eCCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEE
Confidence            34556666665543  357899999999976666 899999999765443211       1 00       011123456


Q ss_pred             EEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         409 MVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       409 ~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .|.+|.|++.|.|+|.|.|..|.+.++
T Consensus        81 ~i~~L~p~t~Y~frV~A~N~~G~Gp~S  107 (123)
T d1wfta_          81 AHIDYTSRPAIVFRISAKNEKGYGPAT  107 (123)
T ss_dssp             CCCBCSSSCEEEEEEEEBSSSSBCCCE
T ss_pred             EEcCCCCCCEEEEEEEEecCCcCCCCC
Confidence            789999999999999999999988655

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.3e-07  Score=77.56  Aligned_cols=80  Identities=19%  Similarity=0.383  Sum_probs=62.3

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA  425 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A  425 (1101)
                      +||..+.+   . .++.+++.|+|.+|.    .++.+|.|.+...++..+..... ......+.|.+|.|++.|.|++.|
T Consensus         3 spP~~l~v---~-~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~a   73 (90)
T d1fnha2           3 SPPRRARV---T-DATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTI-KPDVRSYTITGLQPGTDYKIYLYT   73 (90)
T ss_dssp             CCCEEEEE---E-EECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCEEEEC-CTTCSEEEEESCCTTCEEEEEEEE
T ss_pred             CcCCCCEE---E-EecCCEEEEEEECCC----CCCceeEEEEEEccCCceEEEec-CCCccEEEeCCCCCCcEEEEEEEE
Confidence            34444444   3 788999999999882    36889999999877665554432 345678999999999999999999


Q ss_pred             EecCCCCCC
Q psy8139         426 ENVVGFSEP  434 (1101)
Q Consensus       426 ~n~~G~~~~  434 (1101)
                      .|..|.+.+
T Consensus        74 ~~~~g~s~p   82 (90)
T d1fnha2          74 LNDNARSSP   82 (90)
T ss_dssp             EETTEECCC
T ss_pred             EeCCCCcCC
Confidence            999987653

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.35  E-value=5.9e-07  Score=75.42  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  434 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~  434 (1101)
                      .++.+++.|+|.+|.    ..+.+|.|.+...+...+.. . ......+++|.+|.|++.|.|++.|.+..|.+.+
T Consensus        10 ~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~-~-~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~~   79 (87)
T d1qr4a1          10 DPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM-E-IPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKP   79 (87)
T ss_dssp             SCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEE-E-ECTTCSEEEEESCCSSCEEEEEEEEESSSCBCCC
T ss_pred             EecCCEEEEEEECCC----CCcceeEEEeecCCcceeEE-e-CCCCcCEEEECCCCcCCEEEEEEEEEcCCCCccC
Confidence            788999999999983    36889999998766543322 1 2345678999999999999999999999987754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.35  E-value=3.1e-07  Score=77.30  Aligned_cols=74  Identities=19%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             EEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEE
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLV  636 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l  636 (1101)
                      .+.+|+++.|.|.+.+ .|.+.+.|+++|..+..        ......+.|.++...|+|.|+|.|.|..|.. +..+.|
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~--------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~i   84 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI   84 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEcccccce--------eccccccEECccceeccceEEEEEEeCCCCeEEeeEEE
Confidence            5788999999999874 46668999999976542        1224578999999999999999999988864 345666


Q ss_pred             EEec
Q psy8139         637 TVTD  640 (1101)
Q Consensus       637 ~v~~  640 (1101)
                      +|+.
T Consensus        85 tV~E   88 (89)
T d1fnla2          85 TITQ   88 (89)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6653

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=3.5e-07  Score=77.84  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             cccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcC--ccccccceEEEcCccCCccEEEEEEEEecC
Q psy8139         352 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS--PHMVEDTELMVSGLEPGWRYQFRITAENVV  429 (1101)
Q Consensus       352 ~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~--~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~  429 (1101)
                      ..+.+. .++.++++|+|.+|    ...+.+|.|++....+..+....  .......+++|.+|.|++.|.|++.|.|..
T Consensus         5 ~~l~v~-~~~~~sv~v~W~~p----~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   79 (92)
T d1tdqa2           5 KNLRVG-SRTATSLDLEWDNS----EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNS   79 (92)
T ss_dssp             EEEEEE-EECSSCEEEEEECC----SSCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETT
T ss_pred             cCCEEE-EecCCEEEEEEEec----CCcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeCC
Confidence            334333 77899999999998    23688999999876655433221  223455689999999999999999999999


Q ss_pred             CCCCCC
Q psy8139         430 GFSEPG  435 (1101)
Q Consensus       430 G~~~~s  435 (1101)
                      |.+.++
T Consensus        80 g~s~p~   85 (92)
T d1tdqa2          80 KQSIPA   85 (92)
T ss_dssp             EECCCE
T ss_pred             CEecCE
Confidence            987643

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=84.77  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             CCCCCCcccCCCCCCCCCeeEEEEeCCCCC-----CCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-----GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~-----g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      .+|.+|..+.+....+.+++.|+|.+|..+     .+..+.+|.+.+.   +..+........+...+.|.+|.+++.|.
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~---~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~   85 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK---GQRVAEVIFPTADSTAVELVRLRSLEAKG   85 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS---SSEEEEECCTTCSEEEEESHHHHHHTCSC
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee---cccceeeeeeccceeeeeccCCCCCcEEE
Confidence            344566665443246678999999998542     2346777877642   22333333333445678899999999999


Q ss_pred             EEEEEEecCCCCCCC
Q psy8139         421 FRITAENVVGFSEPG  435 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s  435 (1101)
                      |+|.|.|..|.+..|
T Consensus        86 v~V~A~n~~G~s~~S  100 (117)
T d2cspa1          86 VTVRTLSAQGESVDS  100 (117)
T ss_dssp             BEEEEEESSCCCCCC
T ss_pred             EEEEEEcCCCcCCCC
Confidence            999999999988765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.1e-07  Score=79.71  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             EEeeCCEEEEEEEEee-cCCC--eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139         559 LFEMGEIIKLKVSMAG-MPPP--TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL  635 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~  635 (1101)
                      .+..|+.++|.|.+.| .|.+  ++.|++++..+.....   ........|.|......|.|.|+|.|.|..|.......
T Consensus        15 ~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~   91 (103)
T d1iama1          15 WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELF   91 (103)
T ss_dssp             EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEE
T ss_pred             eEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEe
Confidence            6788999999999997 4544  6889999988753211   11223567899999999999999999999998777777


Q ss_pred             EEEe
Q psy8139         636 VTVT  639 (1101)
Q Consensus       636 l~v~  639 (1101)
                      +.+.
T Consensus        92 ~~~s   95 (103)
T d1iama1          92 ENTS   95 (103)
T ss_dssp             EEEC
T ss_pred             eeEc
Confidence            6665

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2e-07  Score=81.55  Aligned_cols=86  Identities=7%  Similarity=-0.010  Sum_probs=59.2

Q ss_pred             cCceeEEccCCeEEEEEEEec-c--CCCeEEEEECCEEeecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEG-I--PTPKVSWYKDGFEIFSSRRQRIVT--DNDISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g-~--p~~~v~W~~~g~~~~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      .+....+.+|+.++|.|.+.| .  |.+.|+|++++..+..........  ....+.|.|.....+|.|.|+|.|.|..|
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            444557889999999999986 3  455899999999886432211111  12234677777777888899999999987


Q ss_pred             ceEEEEEEeec
Q psy8139         533 HSITKARLRLE  543 (1101)
Q Consensus       533 ~~~~s~~l~V~  543 (1101)
                      .......+.+.
T Consensus        88 ~~~~~~~~~~s   98 (106)
T d1zxqa1          88 SRGGNIFHKHS   98 (106)
T ss_dssp             GGTCCEEEEEC
T ss_pred             CCCCeeEeccc
Confidence            65444444443

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.7e-07  Score=76.16  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  434 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~  434 (1101)
                      +++.+++.|+|.+|.    ..+.+|.|.+...++..+...  ......++.|.||.|++.|.|++.|.|..|.+.+
T Consensus        12 ~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~   81 (93)
T d2cuma1          12 EVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEIL--LPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPP   81 (93)
T ss_dssp             SCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEEE--ECSSCSEEEECSCCTTCEEEEEEEEEBTTBCCCC
T ss_pred             EeCCCEEEEEEEccc----cccccEEEEEEccccccEEEE--ECCCccEEEEeCccCCCEEEEEEEEEeCCCCCCC
Confidence            788999999999982    368899999988655433322  2345678999999999999999999999987754

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2e-07  Score=82.06  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=59.3

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc------eEEc-CccccccceEEEcCccCCccE
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY------WVRA-SPHMVEDTELMVSGLEPGWRY  419 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~------w~~~-~~~~~~~~~l~i~~L~p~d~y  419 (1101)
                      ||++|..+.|....+.++|+|+|.+|. +++.++ .|.+.+.......      |... ........++.+.+|.+++.|
T Consensus         4 PP~~P~~v~~i~~~~~~sv~~sW~p~~-d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y   81 (107)
T d1cd9b1           4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM   81 (107)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCS-CCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred             ccCCCcCCEEEEecCCCEEEEEEcCCC-CCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceE
Confidence            566777766654677899999999884 666665 5666654433222      1111 122234567899999999999


Q ss_pred             EEEEEEEecCCCCC
Q psy8139         420 QFRITAENVVGFSE  433 (1101)
Q Consensus       420 ~y~c~A~n~~G~~~  433 (1101)
                      .|++.|.|..|.+.
T Consensus        82 ~frV~A~N~~G~s~   95 (107)
T d1cd9b1          82 AIWVQAENMLGSSE   95 (107)
T ss_dssp             EEEEEEEETTEEEE
T ss_pred             EEEEEEEeCCcccc
Confidence            99999999999875

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=79.53  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             CCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCC--CCCCCC
Q psy8139         360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF--SEPGPL  437 (1101)
Q Consensus       360 ~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~--~~~s~~  437 (1101)
                      .+.+++.|+|.+|...++..+..|.|+++......+............++|.+|.|++.|.|+|+|.+..|.  +.+|++
T Consensus        15 ~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~~~g~WSeW   94 (100)
T d2gysa4          15 KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEW   94 (100)
T ss_dssp             ---CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCC
T ss_pred             ECCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCCCCCCccCC
Confidence            356789999999977767678899999987554422211122235678999999999999999999987764  677877


Q ss_pred             CcceE
Q psy8139         438 SEPLT  442 (1101)
Q Consensus       438 s~~vt  442 (1101)
                      |..++
T Consensus        95 S~~~~   99 (100)
T d2gysa4          95 SEARS   99 (100)
T ss_dssp             CCCEE
T ss_pred             CCCcc
Confidence            76653

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3e-07  Score=79.72  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=62.2

Q ss_pred             CCcccCCCCCCCCCeeEEEEeCCCCC---CCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139         350 KPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE  426 (1101)
Q Consensus       350 ~p~~l~~~~~~~~~sv~l~W~~p~~~---g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~  426 (1101)
                      +|..+.+. .++.+++.|+|.+|...   +...+..|.+.+...+...+.... .......++|.||.|++.|.|++.|.
T Consensus         4 pP~~v~~~-~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1           4 PPVGVQAS-ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN-ANATTLSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             CCEEEEEE-EEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEE-CCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCcCeEEE-EecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEe-cCCCccEEEECCCCCCCEEEEEEEEE
Confidence            34555554 88999999999987432   234567899998776554432221 22455789999999999999999999


Q ss_pred             ecCCCCCCCC
Q psy8139         427 NVVGFSEPGP  436 (1101)
Q Consensus       427 n~~G~~~~s~  436 (1101)
                      |..|.|.+|.
T Consensus        82 n~~g~s~~S~   91 (100)
T d1x5ja1          82 KGRRSSTWSM   91 (100)
T ss_dssp             CSSCBCCCCC
T ss_pred             eCCcCcCCCC
Confidence            9999887663

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.5e-06  Score=77.81  Aligned_cols=83  Identities=17%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCC----CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS----PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP  434 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~----~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~  434 (1101)
                      .+++++|.|+|.+|. ++ ..|.+|.|.|+..+.    ..|...........++.|.+|.|++.|.|++.|.|..|.+..
T Consensus        26 ~~s~tsi~v~W~~p~-~~-~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~  103 (120)
T d1ujta_          26 VLTPTTVQVTWTVDR-QP-QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD  103 (120)
T ss_dssp             CCBTTEEEEEEEESS-CC-SSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCC
T ss_pred             EeCCCeEEEEecCCC-CC-CcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCC
Confidence            457899999999984 33 379999999976432    346665444455678999999999999999999999998876


Q ss_pred             CCCCcceEEEec
Q psy8139         435 GPLSEPLTVTYQ  446 (1101)
Q Consensus       435 s~~s~~vtv~~~  446 (1101)
                      |   ..+.+...
T Consensus       104 S---~~~~~~T~  112 (120)
T d1ujta_         104 S---ESKTVRTT  112 (120)
T ss_dssp             C---CCEEEEEC
T ss_pred             C---CCEEEEeC
Confidence            5   44555443

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=79.03  Aligned_cols=71  Identities=20%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             EEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc---cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139         705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP---HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS  777 (1101)
Q Consensus       705 ~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s  777 (1101)
                      +|+|+||..+++  ...|.|+|+..++..|..+..   .......+.+.+|.++..|.|||+|.|..|.|.++...
T Consensus        20 ~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n~~g~S~Ws~t~   93 (99)
T d1y6kr1          20 ILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTN   93 (99)
T ss_dssp             EEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEETTEECCCEECS
T ss_pred             EEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEcCCCcCCCcccC
Confidence            344444433333  357999999988888987632   11112334678999999999999999999998876543

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.4e-07  Score=78.80  Aligned_cols=83  Identities=10%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcC--------ccccccceEEEcCccCCcc
Q psy8139         347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS--------PHMVEDTELMVSGLEPGWR  418 (1101)
Q Consensus       347 ~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~--------~~~~~~~~l~i~~L~p~d~  418 (1101)
                      +|+.|..|.+. +++.++++|+|.+|.    ..+.+|.|++.......+....        .......+++|.+|.|++.
T Consensus         3 ~Pp~~~~l~v~-~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           3 SRPRLSQLSVT-DVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCCCEEE-SCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CccCCCCcEEE-EECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            34444444444 889999999999872    3688999999876543322211        1123556899999999999


Q ss_pred             EEEEEEEEecCCCCCC
Q psy8139         419 YQFRITAENVVGFSEP  434 (1101)
Q Consensus       419 y~y~c~A~n~~G~~~~  434 (1101)
                      |.|+|.|.|..|.+.+
T Consensus        78 Y~~~V~a~~~~g~g~~   93 (101)
T d2cuia1          78 YSLTLYGLRGPHKADS   93 (101)
T ss_dssp             EEEEEEEECSSSEEEE
T ss_pred             EEEEEEEEeCCcEeCC
Confidence            9999999999998754

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2.6e-07  Score=80.46  Aligned_cols=79  Identities=22%  Similarity=0.352  Sum_probs=60.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC------------CCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS------------GGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~------------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++.....            ..+...    ..++|.|.++...|.|.|+|.|.
T Consensus        10 ~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tL~I~~v~~~D~G~Y~C~a~   85 (102)
T d1f97a1          10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF----SSSGITFSSVTRKDNGEYTCMVS   85 (102)
T ss_dssp             EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE----ETTEEEESCCCGGGCEEEEEEEE
T ss_pred             cEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe----cCCEEEEeECCccCCEEEEEEEE
Confidence            45788899999999999999999999975432210            011111    24579999999999999999999


Q ss_pred             eCCCCceeEEEEEEe
Q psy8139         625 NSLGEDVASFLVTVT  639 (1101)
Q Consensus       625 N~~G~~~~s~~l~v~  639 (1101)
                      |..|.......+.+.
T Consensus        86 n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          86 EEGGQNYGEVSIHLT  100 (102)
T ss_dssp             ETTSSSEEEEEEEEE
T ss_pred             ECCCCEEEEEEEEEE
Confidence            999998776665543

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.8e-07  Score=76.65  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             CCcccCCCCCCC-CCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEE-cCccccccceEEEcCccCCccEEEEEEEEe
Q psy8139         350 KPQLLPDSPSLD-RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR-ASPHMVEDTELMVSGLEPGWRYQFRITAEN  427 (1101)
Q Consensus       350 ~p~~l~~~~~~~-~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~-~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n  427 (1101)
                      +|..+.+. .++ .++++|+|.+|.   +..|.+|.|.|....+..+.. .........+++|.+|.|++.|.+++.|.|
T Consensus         4 PP~~l~v~-~~~~ts~i~v~W~~p~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   79 (94)
T d1fnfa1           4 PPTNLHLE-ANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK   79 (94)
T ss_dssp             CCEEEEEE-ECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEE
T ss_pred             cCcCcEEE-EecCCCEEEEEeeCCC---CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEEc
Confidence            34444333 444 456999999983   335899999998765443321 112234557899999999999999999999


Q ss_pred             cCCCCCC
Q psy8139         428 VVGFSEP  434 (1101)
Q Consensus       428 ~~G~~~~  434 (1101)
                      ..|.+.+
T Consensus        80 ~~g~s~p   86 (94)
T d1fnfa1          80 DDKESVP   86 (94)
T ss_dssp             TTEECCC
T ss_pred             CCCEeCC
Confidence            8887643

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.8e-07  Score=77.60  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCC-cCeeEEEEEEEecCCC-ceEEcCccccccceEEEcCccCCccEEE
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSP-YWVRASPHMVEDTELMVSGLEPGWRYQF  421 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~-~~i~~Y~v~~~~~~~~-~w~~~~~~~~~~~~l~i~~L~p~d~y~y  421 (1101)
                      .+.||.++.+    ..++.+++.|+|.+|...++ ..+..|.+.+...+.. .+............+.|.+|.|++.|.|
T Consensus         2 rl~pP~~l~v----~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   77 (104)
T d2b5ib2           2 RLMAPISLQV----VHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEF   77 (104)
T ss_dssp             CCCCCEEEEE----EEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEE
T ss_pred             ccCCCCCcEE----EEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEE
Confidence            3556666666    37889999999999864432 3456888888765442 1211112223457899999999999999


Q ss_pred             EEEEEecCCC-CCCCCCCcceEEE
Q psy8139         422 RITAENVVGF-SEPGPLSEPLTVT  444 (1101)
Q Consensus       422 ~c~A~n~~G~-~~~s~~s~~vtv~  444 (1101)
                      +|+|.|..|. +.+|++|.+++..
T Consensus        78 rVra~~~~g~~g~wS~wS~~v~~~  101 (104)
T d2b5ib2          78 QVRVKPLQGEFTTWSPWSQPLAFR  101 (104)
T ss_dssp             EEEEEESCCSSCCCCCCCCCEEEE
T ss_pred             EEEEEECCCCCCCCCCCcCCEEEE
Confidence            9999998885 5678888877765

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.3e-07  Score=82.93  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=59.4

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCce--EEEe------ecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY--EITH------TDRYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +.+..|+++.|.|.+.|.|.|.+.|++++..+......  ....      ....++|.|.++...|.|.|+|.|.|..|.
T Consensus        14 v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~   93 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGN   93 (105)
T ss_dssp             CCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSS
T ss_pred             EEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCC
Confidence            36788999999999999999999999865443211100  0000      001357999999999999999999999998


Q ss_pred             ceeEEEEEE
Q psy8139         630 DVASFLVTV  638 (1101)
Q Consensus       630 ~~~s~~l~v  638 (1101)
                      ......+.+
T Consensus        94 ~~~~~~v~v  102 (105)
T d1nbqa1          94 SYGEVKVKL  102 (105)
T ss_dssp             CEECCEEEC
T ss_pred             EEEEEEEEE
Confidence            766555543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.25  E-value=2.8e-07  Score=81.14  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             eeEEccCCeEEEEEEE-eccCCCeEEEEECCEEeecC-------CcEEEEecCCeeEEEEeecCCCCCE---EEEEEEEe
Q psy8139         461 DTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSS-------RRQRIVTDNDISTLIIHQAALMDEG---EIKCTATN  529 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~-------~~~~~~~~~~~~~l~I~~l~~~d~g---~Y~C~a~n  529 (1101)
                      +.++.+|+++.|.|.+ .|.|.|.+.|++++..+...       ..+... .  ..+|.|.+++..|+|   .|.|.|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~--~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG-P--DGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-T--TSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc-c--ccccEEeeeEeeccCCceEEEEEEEe
Confidence            4567899999999986 89999999999986554322       122222 2  237999999988766   79999999


Q ss_pred             CCCceEEEEEE
Q psy8139         530 RAGHSITKARL  540 (1101)
Q Consensus       530 ~~g~~~~s~~l  540 (1101)
                      ..|.......+
T Consensus        88 ~~g~~~~~~~~   98 (111)
T d1biha2          88 AAVDEEVVLVE   98 (111)
T ss_dssp             TTCSSCEEEEE
T ss_pred             CCCCceEEEEE
Confidence            99987665433

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.5e-06  Score=76.50  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCC--CCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEE
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY--DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ  420 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~--~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~  420 (1101)
                      ..|.||..+.+. +. ..+.++++|+|.+|..  +++..+..|.++++..+...|....  ......++|.+|.+++.|.
T Consensus         6 VkP~PP~~l~v~-~~-~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~t~Y~   81 (109)
T d1uc6a_           6 VKPDPPENVVAR-PV-PSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE--LSNGTAHTITDAYAGKEYI   81 (109)
T ss_dssp             CCCCCCEEEEEE-EC-TTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE--ESSCSEEEETTCCSSSCEE
T ss_pred             EECCCCCCCEEE-EE-ecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec--cCCceeEEeCCCCCCCEEE
Confidence            467777666542 11 4467899999999853  2334567899999888777776543  3456789999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCcceEEE
Q psy8139         421 FRITAENVVGFSEPGPLSEPLTVT  444 (1101)
Q Consensus       421 y~c~A~n~~G~~~~s~~s~~vtv~  444 (1101)
                      |+|+|.|. +.+.+|.+|.++..+
T Consensus        82 ~rVrA~~~-~~g~wS~WS~~~~~t  104 (109)
T d1uc6a_          82 IQVAAKDN-EIGTWSDWSVAAHAT  104 (109)
T ss_dssp             EEEECCBS-SSCCCCCCCEEEEEC
T ss_pred             EEEEEEEC-CCCCcCCCCCCEEeE
Confidence            99999875 667778888777653

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.4e-07  Score=82.33  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             CcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEE-----------------------cCccccccce
Q psy8139         351 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR-----------------------ASPHMVEDTE  407 (1101)
Q Consensus       351 p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~-----------------------~~~~~~~~~~  407 (1101)
                      |..+.+. ..++++|.|+|.+|..+++..|.+|.|+|+..+...+..                       .........+
T Consensus         5 plnl~~~-~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (125)
T d2dtge3           5 LLKFSYI-RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG   83 (125)
T ss_dssp             BCCCSEE-EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred             CEEEEEE-EecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCE
Confidence            3444443 788999999999997666668999999987654332111                       1112234567


Q ss_pred             EEEcCccCCccEEEEEEEEecCCCCC
Q psy8139         408 LMVSGLEPGWRYQFRITAENVVGFSE  433 (1101)
Q Consensus       408 l~i~~L~p~d~y~y~c~A~n~~G~~~  433 (1101)
                      +.|.+|.|++.|.|+|.|.|..|.+.
T Consensus        84 ~~l~~L~p~T~Y~~~V~A~n~~G~~~  109 (125)
T d2dtge3          84 WLMRGLKPWTQYAIFVKTLVTFSDER  109 (125)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSSC
T ss_pred             EEECCCccCCEEEEEEEEEeCCCccC
Confidence            99999999999999999999999653

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=8.9e-06  Score=73.48  Aligned_cols=91  Identities=20%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             eeEEccCCeEEEEEEEeccC---CCeEEEEECCEEe-----------ec------CCcEEEEec---CCeeEEEEeecCC
Q psy8139         461 DTTALEDEKVEFTVQVEGIP---TPKVSWYKDGFEI-----------FS------SRRQRIVTD---NDISTLIIHQAAL  517 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~~-----------~~------~~~~~~~~~---~~~~~l~I~~l~~  517 (1101)
                      .+.+..|++++|.|...+.+   ...+.|++.+...           ..      ..+..+...   .+..+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46788999999999875433   3368999864310           00      112233222   2356899999999


Q ss_pred             CCCEEEEEEEEeCCCceEEEEEEeeccCCccccC
Q psy8139         518 MDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP  551 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~  551 (1101)
                      .|+|.|.|.+.+..+.......|.|..|+....|
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p  124 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP  124 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECTTTTSST
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCC
Confidence            9999999999999888888889999887655433

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.15  E-value=4.6e-07  Score=79.77  Aligned_cols=81  Identities=12%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             EEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCceE----EEeecceEEEEEccCCCCCCe---EEEEEEEeCCCCc
Q psy8139         559 LFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYE----ITHTDRYLNLRISDARRADRG---EYQAHGVNSLGED  630 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~----~~~~~~~~sl~i~~l~~~~~y---~y~c~A~N~~G~~  630 (1101)
                      .+.+|+++.|.|.+ .|.|.|.+.|.+++..+.......    .......++|.|.+++..|.|   .|.|.|.|..|..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            34579999999986 899999999999876654221110    011122457999999887765   7999999999987


Q ss_pred             eeEEEEEEe
Q psy8139         631 VASFLVTVT  639 (1101)
Q Consensus       631 ~~s~~l~v~  639 (1101)
                      .....+.+.
T Consensus        93 ~~~~~~~~i  101 (111)
T d1biha2          93 EVVLVEYEI  101 (111)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            766544443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=9.9e-07  Score=75.05  Aligned_cols=74  Identities=20%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC----------CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----------RRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~----------~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +.+....|++++|.|... .|.+.|.|++++..+...          ............+|+|.++.++|+|.|.|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            356788999999999864 588899999988765321          111122233345899999999999999999988


Q ss_pred             CCCce
Q psy8139         530 RAGHS  534 (1101)
Q Consensus       530 ~~g~~  534 (1101)
                      ..+..
T Consensus        82 ~~~t~   86 (93)
T d1ccza1          82 ITDTM   86 (93)
T ss_dssp             CCSCE
T ss_pred             CCcEE
Confidence            76644

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.07  E-value=2.5e-06  Score=70.90  Aligned_cols=69  Identities=20%  Similarity=0.281  Sum_probs=54.3

Q ss_pred             eEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+.+|++++|.|.+.+.|.+ .+.|+++|..+...          ...|.|.++...|.|.|+|.|.|..++.  .+.|
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~--~v~l   81 (85)
T d2fcba1          14 INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSD--PVHL   81 (85)
T ss_dssp             SEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEECTTSBCCC--CEEE
T ss_pred             eEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEECCCCcccc--cEEE
Confidence            378899999999999988765 68889999887643          3458889999999999999998865433  3444


Q ss_pred             EE
Q psy8139         637 TV  638 (1101)
Q Consensus       637 ~v  638 (1101)
                      .|
T Consensus        82 ~V   83 (85)
T d2fcba1          82 TV   83 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2e-06  Score=76.31  Aligned_cols=97  Identities=21%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCC-----cCeeEEEEEEEecCCCceEEcC-ccccccceEEEcCccCC
Q psy8139         343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-----SPVLGYLVEHRRTGSPYWVRAS-PHMVEDTELMVSGLEPG  416 (1101)
Q Consensus       343 ~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~-----~~i~~Y~v~~~~~~~~~w~~~~-~~~~~~~~l~i~~L~p~  416 (1101)
                      ..|.+|.++.+     ..+.+++.|+|.+|...++     ..+..|.|+++..+...|.... ........+.+.+|.|+
T Consensus         4 vkP~pP~nl~v-----~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~   78 (114)
T d2gysa2           4 VQPPEPRDLQI-----STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPS   78 (114)
T ss_dssp             BCCCCCEEEEE-----EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTT
T ss_pred             ccCCcCCCeEE-----EEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCC
Confidence            35666666665     3456799999999864433     2356799999876654332211 11233457889999999


Q ss_pred             ccEEEEEEEEecCCC---CCCCCCCcceEEE
Q psy8139         417 WRYQFRITAENVVGF---SEPGPLSEPLTVT  444 (1101)
Q Consensus       417 d~y~y~c~A~n~~G~---~~~s~~s~~vtv~  444 (1101)
                      +.|.|+|+|.|..|.   +.+|.+|.++...
T Consensus        79 t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~  109 (114)
T d2gysa2          79 STYVARVRTRLAPGSRLSGRPSKWSPEVCWD  109 (114)
T ss_dssp             CEEEEEEEEEECTTSSCCBCCCCCCCCEEEE
T ss_pred             cEEEEEEEEEeCCCCCCCCCccCCcCCEeee
Confidence            999999999999886   4567788878764

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3e-06  Score=76.59  Aligned_cols=95  Identities=19%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             CCCCCCCCcccCCCCCCCCCeeEEEEeCCCC-CCCcCeeEEEEEEEecCCCceEE-------cCccccccceEEEcCccC
Q psy8139         344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY-DGGSPVLGYLVEHRRTGSPYWVR-------ASPHMVEDTELMVSGLEP  415 (1101)
Q Consensus       344 ~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~-~g~~~i~~Y~v~~~~~~~~~w~~-------~~~~~~~~~~l~i~~L~p  415 (1101)
                      |+.+|..+.+    ..++.++|.|+|.+|.. ..+..+.+|.+.+.......+..       .........++.|.+|.|
T Consensus        14 P~~~P~~v~v----~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   89 (125)
T d1uena_          14 PMVAPGNVRV----NVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEP   89 (125)
T ss_dssp             CCCCCSSCEE----EEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCS
T ss_pred             CCCCCcccEE----EEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCC
Confidence            4445555555    26789999999999852 23447888988886543322111       011223456899999999


Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEe
Q psy8139         416 GWRYQFRITAENVVGFSEPGPLSEPLTVTY  445 (1101)
Q Consensus       416 ~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~  445 (1101)
                      ++.|.|+|.|.|..|.+.+|   ..++++.
T Consensus        90 ~t~Y~~~V~A~n~~G~g~~S---~~~~~~T  116 (125)
T d1uena_          90 FSHYTLNVRVVNGKGEGPAS---PDRVFNT  116 (125)
T ss_dssp             SCEEEEEEEEEESSCEEEEC---CCEEEEC
T ss_pred             CCEEEEEEEEEeCCcccCCC---CCEEEEC
Confidence            99999999999999987655   4455543

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.7e-06  Score=74.44  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=51.5

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEE-cCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR-ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP  436 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~-~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~  436 (1101)
                      ..+ ...+|+|++|..+|+ .+..|.+.........|.. ..........+++.+|.++..|.|||.|.|..|.|.++.
T Consensus        11 s~n-~~~~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~g~S~ws~   87 (98)
T d1fyhb1          11 SYN-MNPIVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAK   87 (98)
T ss_dssp             CBS-SCCEEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETTEECCCEE
T ss_pred             EeC-CcEEEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCCcccCCcc
Confidence            443 345799999976666 4555555443333333333 222334456688899999999999999999999887764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.7e-06  Score=70.12  Aligned_cols=70  Identities=21%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             eEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV  636 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l  636 (1101)
                      ..+.+|+.+.|.|.+.+.|.+. +.|++++..+...          ...|.|.+++..|+|.|+|.|.|..++.  .+.|
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v~l   78 (82)
T d1f2qa1          11 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYL   78 (82)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTSSCCC--CEEE
T ss_pred             eEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCChhhCCcEEEEecCCCCcc--cEEE
Confidence            3788999999999999998774 5567788766532          4569999999999999999998765433  3455


Q ss_pred             EEe
Q psy8139         637 TVT  639 (1101)
Q Consensus       637 ~v~  639 (1101)
                      .|.
T Consensus        79 ~V~   81 (82)
T d1f2qa1          79 EVF   81 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.98  E-value=5.2e-06  Score=68.67  Aligned_cols=61  Identities=25%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             eEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      ..+.+|++++|.|.+.+.|.+. +.|++++..+...          ..+|.|.++...|+|.|+|.|.|..+
T Consensus        15 ~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          15 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccCCCc
Confidence            3788999999999999998775 5566777655432          45799999999999999999987654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.8e-06  Score=73.97  Aligned_cols=80  Identities=10%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             EEeeCCEEEEEEEEee-c--CCCeeEEEECCeecCCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139         559 LFEMGEIIKLKVSMAG-M--PPPTARWLHNGEPLTSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNSLGEDVAS  633 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g-~--p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s  633 (1101)
                      .+..|..++|.|.+.| .  |.+++.|++++..+...........  .....|.+......+.|.|+|.|.|..|.....
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~   92 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGN   92 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCC
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCe
Confidence            6778999999999987 3  4568999999988754322211111  123456677777778889999999998876555


Q ss_pred             EEEEE
Q psy8139         634 FLVTV  638 (1101)
Q Consensus       634 ~~l~v  638 (1101)
                      ..+.+
T Consensus        93 ~~~~~   97 (106)
T d1zxqa1          93 IFHKH   97 (106)
T ss_dssp             EEEEE
T ss_pred             eEecc
Confidence            55544

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7.2e-06  Score=70.22  Aligned_cols=76  Identities=20%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccc---cccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139         359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQFRITAENVVGFSEPG  435 (1101)
Q Consensus       359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~---~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s  435 (1101)
                      .......+|+|++|..+|+.  ..|.|+++..+...|..+....   .....+.+.+|.++..|.|||.|.|..|.|.++
T Consensus        13 ~s~n~~~~L~W~pp~~~g~~--~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n~~g~S~Ws   90 (99)
T d1y6kr1          13 EAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWT   90 (99)
T ss_dssp             EEETTEEEEEECCCTTCCTT--CEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEETTEECCCE
T ss_pred             EEECCEEEEEEcCCCCcCCC--CEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEcCCCcCCCc
Confidence            34456788999998766653  5799999988888898764211   123345688999999999999999999988775


Q ss_pred             C
Q psy8139         436 P  436 (1101)
Q Consensus       436 ~  436 (1101)
                      .
T Consensus        91 ~   91 (99)
T d1y6kr1          91 V   91 (99)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=2.7e-05  Score=66.32  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             eEEccCCeEEEEEEEe-c-cCCCeEEEEECCEEeec----------CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         462 TTALEDEKVEFTVQVE-G-IPTPKVSWYKDGFEIFS----------SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~-g-~p~~~v~W~~~g~~~~~----------~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +....|++++|.|... . .....|.|++++..+..          ..+..+. .+  .+|+|.++...|+|.|+|.+.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~-~n--gSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-AN--GDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC-TT--SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC-CC--ccEEEeCCCHHHCEEEEEEEEe
Confidence            4567899999999632 2 22246999998876642          1222222 22  3799999999999999999999


Q ss_pred             CCCceEE--EEEEeec
Q psy8139         530 RAGHSIT--KARLRLE  543 (1101)
Q Consensus       530 ~~g~~~~--s~~l~V~  543 (1101)
                      ..|....  ...|.|.
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            9988643  4556553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.5e-06  Score=68.99  Aligned_cols=73  Identities=12%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCC----------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS----------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL  627 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~----------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~  627 (1101)
                      +....|++++|.|.. +.|.+.+.|.+++..+..          ...........+.+|+|.++++.|+|.|+|.|.|..
T Consensus         5 v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            456779999999975 468889999998866531          011122223446789999999999999999998876


Q ss_pred             CCce
Q psy8139         628 GEDV  631 (1101)
Q Consensus       628 G~~~  631 (1101)
                      |...
T Consensus        84 ~t~~   87 (93)
T d1ccza1          84 DTMK   87 (93)
T ss_dssp             SCEE
T ss_pred             cEEE
Confidence            6543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.66  E-value=8.5e-05  Score=64.01  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=56.5

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C-EE-e-e---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G-FE-I-F---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g-~~-~-~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +...|..+.+.+|++++|.|.........+.|++.  | .+ + .         ...++.....+...+|+|.++.++|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            34567788899999999999987666667999982  1 11 1 0         12456666666677999999999999


Q ss_pred             EEEEEEEEe
Q psy8139         521 GEIKCTATN  529 (1101)
Q Consensus       521 g~Y~C~a~n  529 (1101)
                      +.|.|.+.+
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998654

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.6e-05  Score=67.22  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=53.8

Q ss_pred             CCCCCCCcccCCCCCCCCCeeEEEEeCCCCCC---CcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEE
Q psy8139         345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG---GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQF  421 (1101)
Q Consensus       345 p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g---~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y  421 (1101)
                      |.||.++.+.   ....++.+.|+|.+|....   +.-...|.|+|+..+...|.....     ...++.+|.|+..|.|
T Consensus         2 PdPP~nl~v~---~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~-----~~~t~~~L~p~~~Y~v   73 (94)
T d3d85d3           2 PDPPKNLQLK---PLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVF-----TDKTSATVICRKNASI   73 (94)
T ss_dssp             CCCCEEEEEE---EC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEE-----ESSSEEEECCCSSCEE
T ss_pred             CCCCcccEEE---EecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEecc-----ccceEEEecCCCCEEE
Confidence            5556555542   1123467999999986322   223678999999877666654322     1223346889999999


Q ss_pred             EEEEEecCCCCCCCCCCc
Q psy8139         422 RITAENVVGFSEPGPLSE  439 (1101)
Q Consensus       422 ~c~A~n~~G~~~~s~~s~  439 (1101)
                      +|+|.+..+.|.+|++|.
T Consensus        74 ~VRa~~~~~~g~WSeWS~   91 (94)
T d3d85d3          74 SVRAQDRYYSSSWSEWAS   91 (94)
T ss_dssp             EEEEEESSSCCCCCCCEE
T ss_pred             EEEEecCCCCCCCccCcC
Confidence            999999989888887754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.62  E-value=0.00012  Score=63.06  Aligned_cols=74  Identities=15%  Similarity=0.202  Sum_probs=55.7

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |..   +.         ...++.....++..+|+|.++.++|++
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            4567788899999999999887666667999972  211   11         234566655667779999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99998654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.60  E-value=0.00013  Score=62.63  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEE--CCEE---ee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFE---IF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+..|++++|.|.........+.|++  .|..   +.         ...++.....+....|.|.++.++|++
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            456778889999999999998877777799998  2221   11         123455555556679999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=0.0002  Score=61.81  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |..   +.         ...++.....+....|+|.++.++|+|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            4567788899999999999987666667999982  211   10         124666666677789999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1j1pl_          85 MYFCQQAN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99997643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.55  E-value=0.00018  Score=61.95  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      +...|..+.+.+|++++|.|.........+.|++.  |.   .+.         ...++.....+....|+|.++.++|+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            35568888999999999999987666678899982  11   111         12355555566677999999999999


Q ss_pred             EEEEEEEEe
Q psy8139         521 GEIKCTATN  529 (1101)
Q Consensus       521 g~Y~C~a~n  529 (1101)
                      +.|.|.+.+
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999996543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.54  E-value=0.00014  Score=62.61  Aligned_cols=74  Identities=15%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |.   .+.         ...++.....+....|+|.++.++|++
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            3457788899999999999987666567999982  11   111         124666666666779999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1ospl1          85 TYFCQQYW   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecc
Confidence            99998653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.52  E-value=0.00023  Score=61.43  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  +.   .+.         ...++..........|+|.++.++|++
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            3567788899999999999987766667999972  11   111         134555555667789999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99998643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.00026  Score=63.35  Aligned_cols=85  Identities=19%  Similarity=0.217  Sum_probs=60.6

Q ss_pred             eEEeeCCEEEEEEEEeecC---CCeeEEEECCeec-----------C------CCCceEEEe---ecceEEEEEccCCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMP---PPTARWLHNGEPL-----------T------SGGRYEITH---TDRYLNLRISDARRA  614 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p---~~~v~W~~~g~~l-----------~------~~~~~~~~~---~~~~~sl~i~~l~~~  614 (1101)
                      +.+..|++++|.|......   ...+.|++.+...           .      ...+..+..   ..++.+|.|.+++..
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            5788899999999976433   3468998754211           0      011222221   223678999999999


Q ss_pred             CCeEEEEEEEeCCCCceeEEEEEEecCC
Q psy8139         615 DRGEYQAHGVNSLGEDVASFLVTVTDRP  642 (1101)
Q Consensus       615 ~~y~y~c~A~N~~G~~~~s~~l~v~~~P  642 (1101)
                      |+|.|.|.+.|..|..+....|.|.+|+
T Consensus        92 D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             HCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            9999999999988888888889998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00028  Score=60.58  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C---EEee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G---FEIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g---~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |   ..+.         ...++.....+....|.|.++.++|++
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            3567888999999999999987666667899983  1   1111         124566666667779999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.51  E-value=0.00026  Score=60.90  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  +.   .+.         ....+.....+....|+|.++.++|++
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa   84 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA   84 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence            4567788899999999999987766667999972  11   111         123445555566679999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+.+
T Consensus        85 ~YyCA~~~   92 (108)
T d1jhll_          85 MYICQQHN   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEeeCC
Confidence            99997654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=8.1e-05  Score=66.58  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=57.0

Q ss_pred             ceeEEccCCeEEEEEEEeccCCC----eEEEEECCE----------------Eeec-----CCcEEEEec---CCeeEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTP----KVSWYKDGF----------------EIFS-----SRRQRIVTD---NDISTLI  511 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~----~v~W~~~g~----------------~~~~-----~~~~~~~~~---~~~~~l~  511 (1101)
                      ..+.+..|++++|.|...+.+..    .+.|++...                ....     .++..+...   .+..+|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            34678899999999998754432    588986210                0000     123333221   2345799


Q ss_pred             EeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139         512 IHQAALMDEGEIKCTATNRAGHSITKARLRLE  543 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~  543 (1101)
                      |.++..+|+|.|.|.+.+..|.......|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999988777666667664

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.46  E-value=0.00031  Score=60.42  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  +.   .+.         ...++.....+....|.|.++.++|++
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            4567788899999999999987766667899972  11   111         124566666666779999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1d5il1          85 IYYCLQYD   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecc
Confidence            99997654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=9.1e-05  Score=63.06  Aligned_cols=82  Identities=9%  Similarity=-0.021  Sum_probs=54.4

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc-EEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      .+|.+...|.. .|..|++|+|.|.... +...+.|+++|........ ...........|.|.++...|+|.|.|...+
T Consensus         6 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           6 PMPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            46777777754 5889999999998653 4557888886532111110 0111123344799999999999999999988


Q ss_pred             CCCce
Q psy8139         530 RAGHS  534 (1101)
Q Consensus       530 ~~g~~  534 (1101)
                      ..+.+
T Consensus        84 ~~~~S   88 (99)
T d1ucta1          84 GHYRF   88 (99)
T ss_dssp             TTTEE
T ss_pred             CCccc
Confidence            65543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.44  E-value=0.00027  Score=60.81  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+..|++++|.|.........+.|++.  |.   .+.         ...++.....+....|+|.++.++|++
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            4456778899999999999887665567999972  21   111         124566665667789999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1mexl1          85 EYFCQQYN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeECC
Confidence            99997643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.44  E-value=0.00031  Score=61.26  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE--E-ee---------cCCcEEE--EecCCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF--E-IF---------SSRRQRI--VTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~--~-~~---------~~~~~~~--~~~~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |.  . +.         ...++..  ........|+|.++.++|
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   83 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD   83 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence            4457788899999999999987766667899982  21  1 10         1122222  223456699999999999


Q ss_pred             CEEEEEEEEeCCC
Q psy8139         520 EGEIKCTATNRAG  532 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g  532 (1101)
                      +|.|.|.+....+
T Consensus        84 sg~YyCa~~~~~~   96 (113)
T d2bnqd1          84 SATYLCAVRPTSG   96 (113)
T ss_dssp             CEEEEEEEEESSS
T ss_pred             CcEEeEeEecCCC
Confidence            9999999876544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00088  Score=58.32  Aligned_cols=76  Identities=16%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC--CE-E--e----------ecCCcEEEEec--CCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--GF-E--I----------FSSRRQRIVTD--NDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g~-~--~----------~~~~~~~~~~~--~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|...+. ....+.|++.  |. +  +          ....++.+...  +....|.|.++.+
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence            456788899999999999998653 3456889972  21 1  1          12245555443  3456799999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy8139         518 MDEGEIKCTATNRA  531 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~  531 (1101)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          83 NDSGIYLCGAISLH   96 (114)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             CCCeEEEEEEEeCC
Confidence            99999999886543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.40  E-value=9.2e-05  Score=87.67  Aligned_cols=47  Identities=17%  Similarity=0.036  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy8139           6 SDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYL   53 (1101)
Q Consensus         6 ~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~~aa~~IQ~~~Rg~~   53 (1101)
                      ++-..+.++|+.||++||||++|+++++. ...+.|+++||+.||||+
T Consensus       729 ~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~-~~~r~a~~~IQ~~~R~~~  775 (794)
T d2mysa2         729 MRDDKLAEIITATQARCRGFLMRVEYRAM-VERRESIFCIQYNVRSFM  775 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555422 222345555555555555

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00044  Score=59.79  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=55.7

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C---EEee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G---FEIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g---~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  +   ..+.         ...++.....+....|+|.++.++|++
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence            4557788899999999999987766667899982  1   1111         124566655666778999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00019  Score=60.32  Aligned_cols=79  Identities=11%  Similarity=0.018  Sum_probs=55.4

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|.. .|..|++|+|.|.... +...+.|+++|........ .....+....|.|.++...|+|.|.|...+.
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            45777777755 4779999999998753 4557889998865432110 0001234458999999999999999998765


Q ss_pred             CC
Q psy8139         531 AG  532 (1101)
Q Consensus       531 ~g  532 (1101)
                      .+
T Consensus        80 ~~   81 (95)
T d1olla1          80 EL   81 (95)
T ss_dssp             TE
T ss_pred             CC
Confidence            44

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=9.1e-05  Score=63.99  Aligned_cols=76  Identities=20%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             EccCCeEEEEEEEeccCCCeEEEEECCEEee-------------------cCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-------------------SSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~-------------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +.+|+++.|.|.........+.|++......                   ..++..+..+   ++|.|.++..+|+|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n---gSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT---SCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc---ccEEEcCCCchhCEEEE
Confidence            5699999999985444456799998432110                   0124444322   38999999999999999


Q ss_pred             EEEEeCCCc-eEEEEEEee
Q psy8139         525 CTATNRAGH-SITKARLRL  542 (1101)
Q Consensus       525 C~a~n~~g~-~~~s~~l~V  542 (1101)
                      |.+.+..+. ......|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            999887654 334455554

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00051  Score=58.94  Aligned_cols=69  Identities=19%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             ceeEEccCCeEEEEEEEeccCCCeEEEEEC--C---EEee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G---FEIF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g---~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      ..+.+.+|++++|.|...+.....+.|++.  |   ..+.         ...++.....+....|.|.++.++|++.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            357889999999999987666667999972  1   1111         1345666666677899999999999999999


Q ss_pred             EEE
Q psy8139         526 TAT  528 (1101)
Q Consensus       526 ~a~  528 (1101)
                      .+.
T Consensus        88 a~~   90 (106)
T d1lk3l1          88 QQS   90 (106)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00034  Score=61.91  Aligned_cols=78  Identities=21%  Similarity=0.266  Sum_probs=57.1

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE--CCEE------ee---c-------------CCcEEEE-ecCC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFE------IF---S-------------SRRQRIV-TDND  506 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~~------~~---~-------------~~~~~~~-~~~~  506 (1101)
                      +|.+...|..+.+.+|++++|.|...+.....+.|++  .|..      +.   .             ..++... ..+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            4677788999999999999999999887778899997  1211      10   0             1122222 2234


Q ss_pred             eeEEEEeecCCCCCEEEEEEEEe
Q psy8139         507 ISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       507 ~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      ...|+|.++.++|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            45899999999999999998764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.27  E-value=0.00037  Score=59.56  Aligned_cols=70  Identities=20%  Similarity=0.353  Sum_probs=52.0

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .+.+.+|++++|.|.........+.|++.  |..   +.         ...++..........|.|.++.++|++.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            57789999999999887666667899982  211   11         12345555566677999999999999999998


Q ss_pred             EEeC
Q psy8139         527 ATNR  530 (1101)
Q Consensus       527 a~n~  530 (1101)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.26  E-value=0.00054  Score=59.04  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=55.7

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  +.   .+.         ...++.....+....|.|.++.++|+|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            4567788899999999999987666667999982  21   111         124555555667789999999999999


Q ss_pred             EEEEEEEe
Q psy8139         522 EIKCTATN  529 (1101)
Q Consensus       522 ~Y~C~a~n  529 (1101)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998653

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00019  Score=60.77  Aligned_cols=78  Identities=21%  Similarity=0.345  Sum_probs=54.6

Q ss_pred             EEeeCCEEEEEEEEeec--CCCeeEEEECCeecCC----------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         559 LFEMGEIIKLKVSMAGM--PPPTARWLHNGEPLTS----------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~--p~~~v~W~~~g~~l~~----------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      ....|++++|.|.....  ....|.|.+++..+..          +.+..+.   .+.+|+|.+++..|+|.|+|.+.|.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~ngSL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC---TTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC---CCccEEEeCCCHHHCEEEEEEEEeC
Confidence            45669999999964322  2347999998766521          1122221   2568999999999999999999999


Q ss_pred             CCCce--eEEEEEEe
Q psy8139         627 LGEDV--ASFLVTVT  639 (1101)
Q Consensus       627 ~G~~~--~s~~l~v~  639 (1101)
                      .|...  ....|.|.
T Consensus        83 ~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          83 NGTRILNKALDLRIL   97 (98)
T ss_dssp             TCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
Confidence            99764  45555553

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.22  E-value=0.00049  Score=59.38  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~  520 (1101)
                      ...|..+.+.+|++++|.|..... ....+.|++.  |.   .+.         ...++.....+....|+|.++.++|+
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            345777889999999999987644 3446889983  21   111         12455555566677899999999999


Q ss_pred             EEEEEEEE
Q psy8139         521 GEIKCTAT  528 (1101)
Q Consensus       521 g~Y~C~a~  528 (1101)
                      |.|.|.+.
T Consensus        85 a~YyCa~~   92 (108)
T d2fx7l1          85 AVYYCQQY   92 (108)
T ss_dssp             SEEEEEEC
T ss_pred             EEEeeecC
Confidence            99999864

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.20  E-value=0.00024  Score=84.00  Aligned_cols=43  Identities=26%  Similarity=0.334  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy8139          39 RSKTIVIQKYFRGYLLMRKERQEYLAMKS---SAVKIQEWYRNLQCMRQA   85 (1101)
Q Consensus        39 ~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~---aa~~iQ~~~R~~~~r~~~   85 (1101)
                      ..+|+.||++||||+    +|++|++++.   +++.||+.||++++||++
T Consensus       731 ~~~~~~IQ~~~R~~~----~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         731 SKIISMFQAHIRGYL----IRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            345555566666665    4445554442   455556666666555543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00049  Score=60.43  Aligned_cols=87  Identities=16%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             cCceeEEccCCeEEEEEEEecc---CCCeEEEEECCE-----Eee---------cCCcEEE--EecCCeeEEEEeecCCC
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGI---PTPKVSWYKDGF-----EIF---------SSRRQRI--VTDNDISTLIIHQAALM  518 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~g~-----~~~---------~~~~~~~--~~~~~~~~l~I~~l~~~  518 (1101)
                      .|..+.+.+|++++|.|.....   ....+.|++...     .+.         ...+..+  ....+..+|+|.++...
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            5677889999999999986532   223578987421     110         1123333  22345568999999999


Q ss_pred             CCEEEEEEEEeCCCceEEEEEEeecc
Q psy8139         519 DEGEIKCTATNRAGHSITKARLRLEA  544 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g~~~~s~~l~V~~  544 (1101)
                      |+|.|.|.+............|.|..
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999998764433333345666654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.17  E-value=0.001  Score=57.47  Aligned_cols=74  Identities=14%  Similarity=0.138  Sum_probs=53.3

Q ss_pred             eecCceeEEccCCeEEEEEEEecc----CCCeEEEEEC--CEE----ee--------cCCcEEEEecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI----PTPKVSWYKD--GFE----IF--------SSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~--g~~----~~--------~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|...+.    ....+.|++.  |..    +.        ...++.....+....|+|.++.+
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            456778889999999999987532    1224889982  211    11        12466666666778999999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|++.|.|.+..
T Consensus        85 ~DsA~YyCa~~~   96 (111)
T d2gsia1          85 EDAATYYCSHIR   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEECC
Confidence            999999997653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.16  E-value=0.0014  Score=57.00  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE--E-e---------ecCCcEEE--EecCCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF--E-I---------FSSRRQRI--VTDNDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~--~-~---------~~~~~~~~--~~~~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|...+. ...+.|++.  |.  . +         ....++.+  .......+|+|.++.++|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345777889999999999997654 346899982  11  1 1         01123322  223456789999999999


Q ss_pred             CEEEEEEEEeCCC
Q psy8139         520 EGEIKCTATNRAG  532 (1101)
Q Consensus       520 ~g~Y~C~a~n~~g  532 (1101)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (115)
T d1ogad1          83 TGLYLCAGAGSQG   95 (115)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             eeeEcccccCCCC
Confidence            9999998765433

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.16  E-value=0.0011  Score=57.52  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             eeEEccCCeEEEEEEEeccC--CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      .+.+.+|++++|.|...+..  ...+.|++..  .   .+.         ...++.....+....|.|.++.++|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            57788999999999987543  4568999831  1   111         123555555666779999999999999999


Q ss_pred             EEEEeC
Q psy8139         525 CTATNR  530 (1101)
Q Consensus       525 C~a~n~  530 (1101)
                      |.+...
T Consensus        89 CA~~~~   94 (114)
T d2rhea_          89 CAAWND   94 (114)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            987653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.16  E-value=0.0019  Score=55.78  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=52.5

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEE--ecCCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIV--TDNDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~--~~~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |.   .+.         ...++...  ..+...+|.|.++.++|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3456677889999999999887766667889982  21   111         11233332  23456799999999999


Q ss_pred             CEEEEEEEEe
Q psy8139         520 EGEIKCTATN  529 (1101)
Q Consensus       520 ~g~Y~C~a~n  529 (1101)
                      ++.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.00038  Score=60.95  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C---EEee---------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G---FEIF---------SSRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g---~~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      ..|..+.+..|++++|.|...+.....+.|++.  +   ..+.         ...++.....+....|.|.++.++|++.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            456677789999999999887655567899983  1   1111         1234544445556789999999999999


Q ss_pred             EEEEEEe
Q psy8139         523 IKCTATN  529 (1101)
Q Consensus       523 Y~C~a~n  529 (1101)
                      |.|.+.+
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.12  E-value=0.00049  Score=60.07  Aligned_cols=76  Identities=21%  Similarity=0.339  Sum_probs=55.0

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Eee---------cCCcEEEEe--cCCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EIF---------SSRRQRIVT--DNDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|.....+...+.|++..  .   .+.         ...++....  .....+|+|.++.++|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            45677888999999999999887777789999721  1   110         112333322  2345689999999999


Q ss_pred             CEEEEEEEEeCC
Q psy8139         520 EGEIKCTATNRA  531 (1101)
Q Consensus       520 ~g~Y~C~a~n~~  531 (1101)
                      +|.|.|.+....
T Consensus        84 sg~Y~Ca~~~~~   95 (114)
T d2cdea1          84 SASYICVVSDRG   95 (114)
T ss_dssp             CSEEEEEEECSC
T ss_pred             CcccceeeecCC
Confidence            999999988743

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.12  E-value=0.00057  Score=59.73  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEE--CCE---Eee------------cCCcEEEEecCCeeEEEEeecCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGF---EIF------------SSRRQRIVTDNDISTLIIHQAALM  518 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~---~~~------------~~~~~~~~~~~~~~~l~I~~l~~~  518 (1101)
                      ...|..+.+.+|++++|.|.........+.|++  .|.   .+.            ..........+....|+|.++.++
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            345567889999999999998766666788997  221   111            011122222334568999999999


Q ss_pred             CCEEEEEEEEe
Q psy8139         519 DEGEIKCTATN  529 (1101)
Q Consensus       519 d~g~Y~C~a~n  529 (1101)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1i9ea_          84 DSAVYFCAVSG   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ccceecccccC
Confidence            99999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.12  E-value=0.0006  Score=59.58  Aligned_cols=76  Identities=14%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEe--cCCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVT--DNDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |.   .+.         ...++.+..  ......|+|.++.++|
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSD   84 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccccc
Confidence            3456677899999999999988777778999973  21   111         012233322  2234579999999999


Q ss_pred             CEEEEEEEEeCC
Q psy8139         520 EGEIKCTATNRA  531 (1101)
Q Consensus       520 ~g~Y~C~a~n~~  531 (1101)
                      +|.|.|.+....
T Consensus        85 sg~YyCa~~~~~   96 (115)
T d1lp9e1          85 SALYYCALFLAS   96 (115)
T ss_dssp             CEEEEEEEEECS
T ss_pred             CccceEEEEcCC
Confidence            999999876543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.0016  Score=55.85  Aligned_cols=70  Identities=19%  Similarity=0.099  Sum_probs=51.3

Q ss_pred             eeEEccCCeEEEEEEEeccCCC---eEEEEE---CCEEee-----------cCCcEEEEecCCeeEEEEeecCCCCCEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTP---KVSWYK---DGFEIF-----------SSRRQRIVTDNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~---~v~W~~---~g~~~~-----------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      .+.+.+|++++|.|...+....   .+.|++   ...+..           ...++.....+....|.|.++.++|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            5778999999999998753322   388997   222211           12456666667778999999999999999


Q ss_pred             EEEEEeC
Q psy8139         524 KCTATNR  530 (1101)
Q Consensus       524 ~C~a~n~  530 (1101)
                      .|.+...
T Consensus        89 yCa~~~~   95 (110)
T d1oaql_          89 FCALWYS   95 (110)
T ss_dssp             EEEEEET
T ss_pred             EEEcccC
Confidence            9987653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.09  E-value=0.0023  Score=55.42  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             eeecCceeEEccCCeEEEEEEEecc--CCCeEEEEEC--CE----EeecCCcEEEEec--CCeeEEEEeecCCCCCEEEE
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKD--GF----EIFSSRRQRIVTD--NDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--g~----~~~~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +...|..+.+.+|++++|.|...+.  +...+.|++.  +.    .+....++.....  .....|+|.++.++|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            3456788899999999999988653  3456899972  22    2333444444432  34458999999999999999


Q ss_pred             EEEEe
Q psy8139         525 CTATN  529 (1101)
Q Consensus       525 C~a~n  529 (1101)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.09  E-value=0.0013  Score=56.79  Aligned_cols=76  Identities=14%  Similarity=0.205  Sum_probs=54.4

Q ss_pred             eecCceeEEccCCeEEEEEEEecc--CCCeEEEEEC------CEEeecCCcEEEEec--CCeeEEEEeecCCCCCEEEEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKD------GFEIFSSRRQRIVTD--NDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~------g~~~~~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      ...|..+.+..|++++|.|...+.  ....+.|++.      ...+....++.....  ....+|+|.++.++|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            456778889999999999987543  3457899982      223333444544433  345589999999999999999


Q ss_pred             EEEeCC
Q psy8139         526 TATNRA  531 (1101)
Q Consensus       526 ~a~n~~  531 (1101)
                      .+....
T Consensus        83 A~~~~~   88 (112)
T d1sq2n_          83 GLGVAG   88 (112)
T ss_dssp             EECBTT
T ss_pred             EEecCC
Confidence            876544

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.07  E-value=0.0011  Score=56.45  Aligned_cols=72  Identities=17%  Similarity=0.148  Sum_probs=51.6

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|..... ...+.|++..  .   .+.         ....+.....+....|.|.++.++|++
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            456778889999999999987543 3457899731  1   111         123445555566678999999999999


Q ss_pred             EEEEEEE
Q psy8139         522 EIKCTAT  528 (1101)
Q Consensus       522 ~Y~C~a~  528 (1101)
                      .|.|.+.
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999753

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.06  E-value=0.0011  Score=57.37  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             eecCceeEEccCCeEEEEEEEecc----CCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI----PTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|.....    ....+.|++.  |.   .+.         ...++.....+....|.|.++.+
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            345777888999999999987432    2224899982  21   111         12355555556678999999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|++.|.|.+.+
T Consensus        85 ~Dsa~YyCa~~~   96 (111)
T d1j05a_          85 DDVATYYCQQTN   96 (111)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCccEEEeecC
Confidence            999999997654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.06  E-value=0.00025  Score=61.02  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE-E--ee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF-E--IF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~-~--~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |. +  +.         ...++.....+....|+|.++.++|++
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence            4557778889999999999987766667999972  21 1  11         123444444556679999999999999


Q ss_pred             EEEEEEE
Q psy8139         522 EIKCTAT  528 (1101)
Q Consensus       522 ~Y~C~a~  528 (1101)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (107)
T d3cx5k1          85 TYFCQHH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             cEEeeeC
Confidence            9999764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.05  E-value=0.00073  Score=58.57  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEE--ecCCeeEEEEeecCCCCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIV--TDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~--~~~~~~~l~I~~l~~~d~  520 (1101)
                      ..|..+.+.+|++++|.|.........+.|++.  |.   .+.         ...+....  ..+...+|.|.++.++|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            346677889999999999987655556899973  11   110         11222222  234456899999999999


Q ss_pred             EEEEEEEEeC
Q psy8139         521 GEIKCTATNR  530 (1101)
Q Consensus       521 g~Y~C~a~n~  530 (1101)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (110)
T d1u3ha1          84 ATYFCAASAN   93 (110)
T ss_dssp             SEEEECCEES
T ss_pred             eeEeeeecCC
Confidence            9999987643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00059  Score=59.50  Aligned_cols=76  Identities=25%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             eeecCceeEEccCCeEEEEEEEecc-CCCeEEEEECC----E-E---ee------------cCCcEEEEecCCeeEEEEe
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDG----F-E---IF------------SSRRQRIVTDNDISTLIIH  513 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~g----~-~---~~------------~~~~~~~~~~~~~~~l~I~  513 (1101)
                      +...|.++++..|++++|.|...+. ....+.|++..    . .   +.            ...++.....+....|+|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            3456778889999999999987654 34568999821    1 0   10            1134555556667789999


Q ss_pred             ecCCCCCEEEEEEEEeC
Q psy8139         514 QAALMDEGEIKCTATNR  530 (1101)
Q Consensus       514 ~l~~~d~g~Y~C~a~n~  530 (1101)
                      ++.++|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.03  E-value=0.0012  Score=56.54  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             eeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      .+.+.+|++++|.|.........+.|++.  |.   .+.         ...++.....+....|.|.+++++|++.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            57788999999999976655567899972  21   111         12455555566777999999999999999998


Q ss_pred             EEeC
Q psy8139         527 ATNR  530 (1101)
Q Consensus       527 a~n~  530 (1101)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.02  E-value=0.001  Score=57.44  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             CceeEEccCCeEEEEEEEecc-CCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      |.++.+.+|++++|.|...+. ....+.|++.  |.   .+.         ...++.....+....|+|.++.++|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345788999999999987643 3446889982  21   111         11223333345567899999999999999


Q ss_pred             EEEEEeC
Q psy8139         524 KCTATNR  530 (1101)
Q Consensus       524 ~C~a~n~  530 (1101)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.01  E-value=0.0014  Score=57.07  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             eecCceeEEccCCeEEEEEEEec-cCCCeEEEEEC--CEE---ee----------cCCcEEE--EecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKD--GFE---IF----------SSRRQRI--VTDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~--g~~---~~----------~~~~~~~--~~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|.... .....+.|++.  +..   +.          ...+..+  ...+....|+|.++.+
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            34567788999999999998654 34456889972  211   11          0112222  2334566899999999


Q ss_pred             CCCEEEEEEEEeCCC
Q psy8139         518 MDEGEIKCTATNRAG  532 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~g  532 (1101)
                      +|+|.|.|.+....+
T Consensus        84 ~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          84 VDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGCEEEEEEEECSBT
T ss_pred             ccCCCceEeCCCCCC
Confidence            999999998765443

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.01  E-value=0.0017  Score=56.04  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             ecCceeEEccCCeEEEEEEEecc-----CCCeEEEEEC--CE---Ee-e--------cCCcEEEEecCCeeEEEEeecCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGI-----PTPKVSWYKD--GF---EI-F--------SSRRQRIVTDNDISTLIIHQAAL  517 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~--g~---~~-~--------~~~~~~~~~~~~~~~l~I~~l~~  517 (1101)
                      ..|..+.+.+|++++|.|...+.     ....+.|++.  |.   .+ .        ...++.....+....|.|.++.+
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            44667788999999999987653     2346899872  21   11 1        12355556666777999999999


Q ss_pred             CCCEEEEEEE
Q psy8139         518 MDEGEIKCTA  527 (1101)
Q Consensus       518 ~d~g~Y~C~a  527 (1101)
                      +|++.|.|..
T Consensus        86 ~DsAvYyCa~   95 (112)
T d1mjul1          86 EDVGVYYCLQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999954

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.98  E-value=0.0019  Score=55.77  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             ceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCEEE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEGEI  523 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y  523 (1101)
                      ..+.+.+|++++|.|...+..  ...+.|++.  +.   .+.         ...++....++....|+|.++.++|++.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            367889999999999876533  345999972  11   111         12455556666778999999999999999


Q ss_pred             EEEEEeC
Q psy8139         524 KCTATNR  530 (1101)
Q Consensus       524 ~C~a~n~  530 (1101)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0013  Score=55.39  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEECCE--EeecC------------CcEEEEe---cCCeeEEEEeecCCCCCEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGF--EIFSS------------RRQRIVT---DNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~--~~~~~------------~~~~~~~---~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      +...+|++++|.|.........+.|++...  .+...            .++....   ..+..+|+|.++.+.|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            456789999999998877777899998432  11111            1221111   122447999999999999999


Q ss_pred             EEEEe
Q psy8139         525 CTATN  529 (1101)
Q Consensus       525 C~a~n  529 (1101)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99854

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.97  E-value=0.0021  Score=56.24  Aligned_cols=78  Identities=17%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE--E-ee--------------cCCcEEEEe-cCCeeEEEEee
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF--E-IF--------------SSRRQRIVT-DNDISTLIIHQ  514 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~--~-~~--------------~~~~~~~~~-~~~~~~l~I~~  514 (1101)
                      +...|..+.+.+|++++|.|...+.....+.|++.  |.  . +.              ...++.... .+....|+|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            34567778899999999999987776778999982  21  1 10              123344432 23456899999


Q ss_pred             cCCCCCEEEEEEEEeCCC
Q psy8139         515 AALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~g  532 (1101)
                      +.++|++.|.|.+....|
T Consensus        84 ~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             CCGGGCEEEEEEEECSSC
T ss_pred             cccccCceEEEEEecCCC
Confidence            999999999999865443

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.97  E-value=0.0018  Score=55.86  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-----CCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeecC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-----PTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l~  516 (1101)
                      +..|..+.+.+|++++|.|...+.     ....+.|++.  |..   +.         ...++.....+....|.|.++.
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~   84 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE   84 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence            355777889999999999986532     2235889973  211   11         1245555556667789999999


Q ss_pred             CCCCEEEEEEEE
Q psy8139         517 LMDEGEIKCTAT  528 (1101)
Q Consensus       517 ~~d~g~Y~C~a~  528 (1101)
                      ++|++.|.|...
T Consensus        85 ~eDsAvYYC~~~   96 (112)
T d1ncwl1          85 AEDLGVYYCWQG   96 (112)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcCEeEEEEcC
Confidence            999999999643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.96  E-value=0.0013  Score=57.12  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             eecCceeEEccCCeEEEEEEEecc------CCCeEEEEEC--CEE---ee---------cCCcEEEEecCCeeEEEEeec
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI------PTPKVSWYKD--GFE---IF---------SSRRQRIVTDNDISTLIIHQA  515 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~------p~~~v~W~~~--g~~---~~---------~~~~~~~~~~~~~~~l~I~~l  515 (1101)
                      ...|..+.+.+|++++|.|...+.      ....+.|++.  |..   +.         ...++....++....|.|.++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            455778889999999999986532      1124889982  211   11         124555555666778999999


Q ss_pred             CCCCCEEEEEEEE
Q psy8139         516 ALMDEGEIKCTAT  528 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~  528 (1101)
                      .++|+|.|.|.+.
T Consensus        85 ~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          85 QAEDLAVYYCKQS   97 (113)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCCCeEEEeccc
Confidence            9999999999754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.96  E-value=0.002  Score=55.69  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=52.8

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-----CCCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-----PTPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~  516 (1101)
                      ...|..+.+.+|++++|.|...+.     ....+.|++.  |.   .+.         ...++.....+....|+|.++.
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            456778889999999999997542     2246899972  21   111         1245555556667799999999


Q ss_pred             CCCCEEEEEEEE
Q psy8139         517 LMDEGEIKCTAT  528 (1101)
Q Consensus       517 ~~d~g~Y~C~a~  528 (1101)
                      ++|++.|.|...
T Consensus        86 ~~DsavYyCa~~   97 (113)
T d1n4xl_          86 AEDLGIYYCFQG   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCEEEEEEEC
Confidence            999999999654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0018  Score=54.05  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|. ..|..|++|+|.|.........+.|+++|......    .........+.|.+++..|+|.|.|.....
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            4566666664 46899999999998644455578899988532211    112344568999999999999999987654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0019  Score=55.62  Aligned_cols=83  Identities=10%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             EccCCeEEEEEEEec-cCCC--eEEEEECCEEeecCCcEEEEe-cCC---eeEEEEeecCCCCCEEEEEEEEeCCCce--
Q psy8139         464 ALEDEKVEFTVQVEG-IPTP--KVSWYKDGFEIFSSRRQRIVT-DND---ISTLIIHQAALMDEGEIKCTATNRAGHS--  534 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g-~p~~--~v~W~~~g~~~~~~~~~~~~~-~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~--  534 (1101)
                      +.+|+.++|.|.+.+ .|.+  .++|++++..+.......... .+.   .+.|++.-...++...|+|.|.+..+..  
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            678999999998865 5644  689999988765321100000 111   1245555444445558999999886542  


Q ss_pred             -----EEEEEEeeccCC
Q psy8139         535 -----ITKARLRLEAPP  546 (1101)
Q Consensus       535 -----~~s~~l~V~~~p  546 (1101)
                           ..+..|.|.++|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                 223457776654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00065  Score=59.89  Aligned_cols=87  Identities=15%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             eecCceeEEccCCeEEEEEEEecc----CCCeEEEEEC--CE----Ee---------ec-----CCcEEEEe--cCCeeE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI----PTPKVSWYKD--GF----EI---------FS-----SRRQRIVT--DNDIST  509 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~--g~----~~---------~~-----~~~~~~~~--~~~~~~  509 (1101)
                      +..|.++.+..|++++|.|.....    ....+.|++.  +.    .+         ..     .++..+..  ..+..+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            345778889999999999986532    2347899862  11    11         00     12333322  223457


Q ss_pred             EEEeecCCCCCEEEEEEEEeCCCce--EEEEEEee
Q psy8139         510 LIIHQAALMDEGEIKCTATNRAGHS--ITKARLRL  542 (1101)
Q Consensus       510 l~I~~l~~~d~g~Y~C~a~n~~g~~--~~s~~l~V  542 (1101)
                      |.|.++...|+|.|.|.+.+..+..  .....|.|
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999998754332  23344544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.85  E-value=0.00098  Score=58.18  Aligned_cols=75  Identities=13%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee----------cCCcEEEEe--cCCeeEEEEeecCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF----------SSRRQRIVT--DNDISTLIIHQAALM  518 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~----------~~~~~~~~~--~~~~~~l~I~~l~~~  518 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |.   .+.          ...++....  ......|+|.++.++
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            4456778899999999999987766668999982  21   111          011222222  223447999999999


Q ss_pred             CCEEEEEEEEeC
Q psy8139         519 DEGEIKCTATNR  530 (1101)
Q Consensus       519 d~g~Y~C~a~n~  530 (1101)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.80  E-value=0.0027  Score=55.27  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC--C-EE--ee------------cCCcEEEEec--CCeeEEEEeec
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--G-FE--IF------------SSRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g-~~--~~------------~~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      ...|..+.+.+|++++|.|...+. ....+.|++.  | .+  +.            ...++.....  ....+|+|.++
T Consensus         4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (116)
T d1tvda_           4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             EccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence            345667789999999999987543 4567899871  1 11  11            1235544432  33458999999


Q ss_pred             CCCCCEEEEEEEEeCC
Q psy8139         516 ALMDEGEIKCTATNRA  531 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~n~~  531 (1101)
                      +++|+|.|.|.+....
T Consensus        84 ~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          84 RTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             cccccccceeeEecCC
Confidence            9999999999876543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.78  E-value=0.0015  Score=56.03  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             CceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE-E--ee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF-E--IF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~-~--~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      |..+.+.+|++++|.|.........+.|++.  |. +  +.         ...++.....+....|.|.++.++|++.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4567788999999999876555556889982  22 1  11         123566666667779999999999999999


Q ss_pred             EEEEeC
Q psy8139         525 CTATNR  530 (1101)
Q Consensus       525 C~a~n~  530 (1101)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.78  E-value=0.0022  Score=55.52  Aligned_cols=73  Identities=16%  Similarity=0.214  Sum_probs=52.6

Q ss_pred             CceeEEccCCeEEEEEEEeccC---CCeEEEEEC--CE---Eee---------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP---TPKVSWYKD--GF---EIF---------SSRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~--g~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      |..+.+.+|++++|.|...+..   ...+.|++.  |.   .+.         ...++.....+....|.|.++.++|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            5567899999999999876532   235899982  11   111         124555555666779999999999999


Q ss_pred             EEEEEEEeCC
Q psy8139         522 EIKCTATNRA  531 (1101)
Q Consensus       522 ~Y~C~a~n~~  531 (1101)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999876543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.77  E-value=0.0032  Score=54.15  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=52.4

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee---------cCCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF---------SSRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~---------~~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      ...|..+.+.+|++++|.|.........+.|++.  |.   .+.         ...++.....  +....|+|.++.++|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            4456778899999999999877655567999982  21   111         1123333322  335689999999999


Q ss_pred             CEEEEEEEEeC
Q psy8139         520 EGEIKCTATNR  530 (1101)
Q Consensus       520 ~g~Y~C~a~n~  530 (1101)
                      ++.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999987654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.75  E-value=0.0029  Score=55.04  Aligned_cols=73  Identities=15%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             eecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC-----CEEe---e--------------cCCcEEEEe--cCCeeEE
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD-----GFEI---F--------------SSRRQRIVT--DNDISTL  510 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~-----g~~~---~--------------~~~~~~~~~--~~~~~~l  510 (1101)
                      +..|..+.+.+|++++|.|...+. ....+.|++.     +..+   .              ...++....  ......|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            346778889999999999998763 4456899973     2211   0              011222222  2334589


Q ss_pred             EEeecCCCCCEEEEEEEE
Q psy8139         511 IIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       511 ~I~~l~~~d~g~Y~C~a~  528 (1101)
                      +|.++.++|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999865

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.74  E-value=0.0045  Score=53.23  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE-E--ee-------------cCCcEEEEecCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF-E--IF-------------SSRRQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~-~--~~-------------~~~~~~~~~~~~~~~l~I~~l~  516 (1101)
                      +...|..+.+.+|++++|.|...+ ....+.|++.  |. +  +.             ...............|+|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            455678888999999999998765 3457999982  21 1  10             0112222233456789999999


Q ss_pred             CCCCEEEEEEEEe
Q psy8139         517 LMDEGEIKCTATN  529 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n  529 (1101)
                      ++|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999998764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.74  E-value=0.0029  Score=53.96  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++-  |...            ....++....++...+|.|.++.++|++.|.|.
T Consensus         9 ~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa   88 (106)
T d1a0ql1           9 SLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCL   88 (106)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEE
Confidence            44678899999999887666667999862  2111            012355666666778999999999999999998


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        89 ~~~   91 (106)
T d1a0ql1          89 QYY   91 (106)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0015  Score=57.85  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             eEEeeCCEEEEEEEEeecCC----CeeEEEECCeecC---------------------CCCceEEEe---ecceEEEEEc
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP----PTARWLHNGEPLT---------------------SGGRYEITH---TDRYLNLRIS  609 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~----~~v~W~~~g~~l~---------------------~~~~~~~~~---~~~~~sl~i~  609 (1101)
                      +.+..|+++.|.|.....+.    ..+.|++......                     ..++..+..   ..+..+|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            46778999999999875442    3588986211100                     011222221   1234679999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139         610 DARRADRGEYQAHGVNSLGEDVASFLVTVT  639 (1101)
Q Consensus       610 ~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~  639 (1101)
                      ++++.|+|.|.|.+.|..|.......|.|.
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999988766666666653

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.68  E-value=0.0012  Score=77.92  Aligned_cols=56  Identities=18%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8139           3 QCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYL   63 (1101)
Q Consensus         3 ~~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~~aa~~IQ~~~Rg~~~r~~~r~~~~   63 (1101)
                      ++.++-..+.++|+.||++||||++|+++.+.+ ..+.|++.||+.||||+    .|++|.
T Consensus       722 LE~~r~~~l~~~~~~IQ~~~R~~~~Rk~y~k~r-~~~~ai~~iQ~~~R~~~----~rr~~~  777 (789)
T d1kk8a2         722 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQ-DQRIGLSVIQRNIRKWL----VLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHcccH
Confidence            445566678889999999999999999887432 23468899999999999    666664

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.002  Score=55.06  Aligned_cols=73  Identities=14%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             eeEEccCCeEEEEEEEeccCC----CeEEEEECCEEeec------------CCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPT----PKVSWYKDGFEIFS------------SRRQRIVTDNDISTLIIHQAALMDEGEIK  524 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~----~~v~W~~~g~~~~~------------~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~  524 (1101)
                      .+++..|++++|.|.......    ..+.|.+++..+..            ..+..+... +..+|.|.+++.+|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~-g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-TTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC-CcEEEEECcCChHHCeEEE
Confidence            356788999999997654222    35889887765421            133343333 3458999999999999999


Q ss_pred             EEEEeCCCce
Q psy8139         525 CTATNRAGHS  534 (1101)
Q Consensus       525 C~a~n~~g~~  534 (1101)
                      |.+.+..+..
T Consensus        82 C~V~~~~~~~   91 (105)
T d1dr9a1          82 CVVLKYEKDA   91 (105)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEeCCCCC
Confidence            9998765443

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.62  E-value=0.0027  Score=55.28  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             eecCceeEEccCCeEEEEEEEec-cCCCeEEEEEC--C-EE--ee----------cCCcEEEEe--cCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKD--G-FE--IF----------SSRRQRIVT--DNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~--g-~~--~~----------~~~~~~~~~--~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|.... .....+.|++.  | .+  +.          ...++.+..  ......|+|.++.+
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34567788999999999998753 34456889972  1 11  10          012344433  33456899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy8139         518 MDEGEIKCTATNRA  531 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~~  531 (1101)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          83 EDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGCEEEEEEEECCC
T ss_pred             cccccccceeecCC
Confidence            99999999876543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0081  Score=52.22  Aligned_cols=71  Identities=11%  Similarity=0.026  Sum_probs=48.0

Q ss_pred             CceeEEccCCeEEEEEEEeccCCC---eEEEEEC--CEEe--e-------------cCCcEEEEecCCeeEEEEeecCCC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTP---KVSWYKD--GFEI--F-------------SSRRQRIVTDNDISTLIIHQAALM  518 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~--g~~~--~-------------~~~~~~~~~~~~~~~l~I~~l~~~  518 (1101)
                      |..+.+..|++++|.|........   .+.|++.  |...  .             ..........+....|+|.++..+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            455678899999999997643333   4789982  2211  0             011122333455679999999999


Q ss_pred             CCEEEEEEEEe
Q psy8139         519 DEGEIKCTATN  529 (1101)
Q Consensus       519 d~g~Y~C~a~n  529 (1101)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.61  E-value=0.0012  Score=77.82  Aligned_cols=45  Identities=29%  Similarity=0.313  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy8139          37 MIRSKTIVIQKYFRGYLLMRKERQEYLAM---KSSAVKIQEWYRNLQCMRQA   85 (1101)
Q Consensus        37 ~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~---~~aa~~iQ~~~R~~~~r~~~   85 (1101)
                      .+..+|+.||++||||+    +|++|.++   +.|++.||+.|||+++|+.+
T Consensus       733 ~l~~~~~~IQ~~~Rg~l----~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         733 KLAEIITATQARCRGFL----MRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44588999999999999    66666554   68999999999999987754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0066  Score=50.07  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      .+|.+...|. ..|..|++|+|.|.... +...+.++|+|....    ...........+.|.++...|+|.|+|...
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCCC-CCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeE
Confidence            4577777775 45788999999998653 445788888764321    112223456789999999999999999754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.58  E-value=0.0027  Score=54.98  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE-Ee--ec--C-----CcE-EEE--ecCCeeEEEEeecCCCCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF-EI--FS--S-----RRQ-RIV--TDNDISTLIIHQAALMDE  520 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~-~~--~~--~-----~~~-~~~--~~~~~~~l~I~~l~~~d~  520 (1101)
                      ...|..+.+.+|++++|.|...+. ...+.|++.  +. +.  ..  .     ... ...  .......|.|.++.++|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            455778889999999999998653 457899982  11 11  00  0     111 111  122345899999999999


Q ss_pred             EEEEEEEEeCCC
Q psy8139         521 GEIKCTATNRAG  532 (1101)
Q Consensus       521 g~Y~C~a~n~~g  532 (1101)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999998875443

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0064  Score=52.04  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             ceeEEccCCeEEEEEEEeccC--CCeEEEEECC---EE--ee---------cCCcEEEEe--cCCeeEEEEeecCCCCCE
Q psy8139         460 HDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG---FE--IF---------SSRRQRIVT--DNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g---~~--~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d~g  521 (1101)
                      ..+.+.+|++++|.|......  ...+.|++..   ..  +.         ...++.+..  ..+...|+|.+|+++|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            446788999999999865432  2357898731   11  10         113343332  355678999999999999


Q ss_pred             EEEEEEEeCCC
Q psy8139         522 EIKCTATNRAG  532 (1101)
Q Consensus       522 ~Y~C~a~n~~g  532 (1101)
                      .|.|.+.....
T Consensus        84 ~Y~C~v~~~~~   94 (108)
T d1hkfa_          84 HYWCRIYRPSD   94 (108)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99998875443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.54  E-value=0.0028  Score=54.84  Aligned_cols=73  Identities=25%  Similarity=0.369  Sum_probs=50.2

Q ss_pred             cCceeEEccCCeEEEEEEEeccC-CCeEEEEEC--CE---Eee-------c--CCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKD--GF---EIF-------S--SRRQRIVTDNDISTLIIHQAALMDEGE  522 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~--g~---~~~-------~--~~~~~~~~~~~~~~l~I~~l~~~d~g~  522 (1101)
                      .|..+.+.+|++++|.|...+.. ...+.|++.  |.   .+.       .  ..++.+..+.....|+|.++.++|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            35567889999999999886544 345899982  21   111       1  123333334556689999999999999


Q ss_pred             EEEEEEeC
Q psy8139         523 IKCTATNR  530 (1101)
Q Consensus       523 Y~C~a~n~  530 (1101)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (112)
T d1kgcd1          84 YYCILPLA   91 (112)
T ss_dssp             EEEECCCC
T ss_pred             EeeeEecC
Confidence            99976543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.52  E-value=0.004  Score=53.04  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....++..+|.|.+++++|++.|.|.
T Consensus        10 s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   89 (107)
T d1c5cl1          10 SLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEe
Confidence            3467789999999998776677799996  23221            012344555556678999999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1c5cl1          90 QYA   92 (107)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.52  E-value=0.0032  Score=54.28  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             CceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CEE---ee---------cCCcEEEEe--cCCeeEEEEeecCCCCC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE---IF---------SSRRQRIVT--DNDISTLIIHQAALMDE  520 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~---~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d~  520 (1101)
                      |..+.+.+|++++|.|...+..  ...+.|++.  +..   +.         ...++....  .+....|.|.++.++|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            5567899999999999986543  235889983  211   00         113444433  35567999999999999


Q ss_pred             EEEEEEEEeC
Q psy8139         521 GEIKCTATNR  530 (1101)
Q Consensus       521 g~Y~C~a~n~  530 (1101)
                      +.|.|.+.+.
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999987643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0027  Score=54.73  Aligned_cols=71  Identities=20%  Similarity=0.283  Sum_probs=43.4

Q ss_pred             eeEEccCCeEEEEEEEeccCCC---e--EEEEECCE-Eee---------c----CCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139         461 DTTALEDEKVEFTVQVEGIPTP---K--VSWYKDGF-EIF---------S----SRRQRIVTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~~---~--v~W~~~g~-~~~---------~----~~~~~~~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      .+.+..|++++|.|.....+..   .  +.|.++.. .+.         .    ..........+..+|.|.+++..|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            3567889999999987543322   2  34444332 111         0    00111122233458999999999999


Q ss_pred             EEEEEEEeCC
Q psy8139         522 EIKCTATNRA  531 (1101)
Q Consensus       522 ~Y~C~a~n~~  531 (1101)
                      .|.|.+....
T Consensus        83 ~Y~C~V~~~~   92 (110)
T d1ncna_          83 LYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEecC
Confidence            9999987543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0012  Score=56.66  Aligned_cols=76  Identities=16%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             EeeCCEEEEEEEEeecCCCeeEEEECCeecCC-------------------CCceEEEeecceEEEEEccCCCCCCeEEE
Q psy8139         560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS-------------------GGRYEITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-------------------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      +.+|+++.|.|.........+.|++.......                   .++..+.   .+++|.|.+++.+|+|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~---~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC---TTSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc---ccccEEEcCCCchhCEEEE
Confidence            44699999999855555678999985432110                   1122322   2568999999999999999


Q ss_pred             EEEEeCCCC-ceeEEEEEE
Q psy8139         621 AHGVNSLGE-DVASFLVTV  638 (1101)
Q Consensus       621 c~A~N~~G~-~~~s~~l~v  638 (1101)
                      |.+.+..+. ......|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            999887653 344455543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0015  Score=55.07  Aligned_cols=73  Identities=8%  Similarity=-0.045  Sum_probs=48.5

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC-ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG-RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA  632 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~  632 (1101)
                      .|..|++++|.|... .+...+.|+++|....... ............+.|.+++..+.|.|+|...|..+.+..
T Consensus        17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~   90 (99)
T d1ucta1          17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRY   90 (99)
T ss_dssp             EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCC
Confidence            678899999999765 3456888888764221100 000111123457999999999999999999887664433

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.46  E-value=0.0052  Score=51.04  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=45.3

Q ss_pred             CCeEEEEEEEeccCCCeEEEEEC--CE---Eee--------cCCcEEEE--ecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         467 DEKVEFTVQVEGIPTPKVSWYKD--GF---EIF--------SSRRQRIV--TDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       467 g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~--------~~~~~~~~--~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      |++++|.|.........+.|++.  +.   .+.        ...++...  ......+|+|.++.++|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            78899999988777778999972  11   111        12344433  2344568999999999999999987653

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.45  E-value=0.0039  Score=53.10  Aligned_cols=69  Identities=19%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....++..+|.|.++.++|++.|.|.
T Consensus        10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEe
Confidence            3467789999999988766666799985  23221            123455655566678899999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        90 ~~~   92 (106)
T d1i8ka_          90 QSF   92 (106)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.43  E-value=0.0052  Score=52.47  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=51.3

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++-  +...            ....++..........|+|.+++++|++.|.|.
T Consensus        10 ~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa   89 (107)
T d1kcvl1          10 SMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCG   89 (107)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEE
Confidence            45788899999999988766678999962  2111            013455555666788999999999999999997


Q ss_pred             EE
Q psy8139         623 GV  624 (1101)
Q Consensus       623 A~  624 (1101)
                      +.
T Consensus        90 ~~   91 (107)
T d1kcvl1          90 QS   91 (107)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.42  E-value=0.0044  Score=52.89  Aligned_cols=69  Identities=12%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|...+.....+.|++  .|...            ....++.....+...+|.|.++.++|++.|.|.
T Consensus        10 ~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1ospl1          10 SFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEe
Confidence            4578889999999998776666799997  22211            113456666666778999999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1ospl1          90 QYW   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.40  E-value=0.0049  Score=52.60  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....+...+|.|.++++.|++.|.|.
T Consensus        10 ~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEE
Confidence            3468889999999998766667899986  22211            112456666667778999999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1j1pl_          90 QAN   92 (107)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0032  Score=55.42  Aligned_cols=73  Identities=19%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             cCceeEEccCCeEEEEEEEeccC-------CCeEEEEECCEEee--------c---------CCcEEEEec--CCeeEEE
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP-------TPKVSWYKDGFEIF--------S---------SRRQRIVTD--NDISTLI  511 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p-------~~~v~W~~~g~~~~--------~---------~~~~~~~~~--~~~~~l~  511 (1101)
                      .|.++++.+|++|+|.|......       ...+.|++....-.        .         ..++.+...  .+..+|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            35678899999999999875221       12578988533211        0         124444332  2355899


Q ss_pred             EeecCCCCCEEEEEEEEeC
Q psy8139         512 IHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       512 I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      |.+|.++|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999998754

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0023  Score=53.32  Aligned_cols=70  Identities=7%  Similarity=-0.027  Sum_probs=48.8

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED  630 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~  630 (1101)
                      .+..|.+++|.|... .....+.|+++|........ .....+....+.|.++++.+.|.|+|...+..+.+
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S   83 (95)
T d1olla1          14 MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWS   83 (95)
T ss_dssp             EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEEC
T ss_pred             cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCcc
Confidence            577899999999864 34577888888764321100 00012235679999999999999999988766544

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.32  E-value=0.0092  Score=51.27  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE--E-ee-------------cCCcEEEEec-CCeeEEEEeecC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF--E-IF-------------SSRRQRIVTD-NDISTLIIHQAA  516 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~--~-~~-------------~~~~~~~~~~-~~~~~l~I~~l~  516 (1101)
                      ...|..+.+.+|++++|.|...+. ...+.|++.  |.  . +.             ...++..... +....|+|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            345778889999999999986543 457889972  21  1 10             0123333332 234589999999


Q ss_pred             CCCCEEEEEEEEe
Q psy8139         517 LMDEGEIKCTATN  529 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n  529 (1101)
                      ++|++.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0038  Score=54.43  Aligned_cols=74  Identities=12%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             cCceeEEccCCeEEEEEEEecc---C---CCeEEEEECC----EEee-----------cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGI---P---TPKVSWYKDG----FEIF-----------SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~---p---~~~v~W~~~g----~~~~-----------~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      .|..+.+.+|++|+|.|.....   +   ...+.|++..    ..+.           ...++.+...  .+..+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            4667889999999999987531   1   1245677632    1111           1234444322  3455799999


Q ss_pred             cCCCCCEEEEEEEEeCC
Q psy8139         515 AALMDEGEIKCTATNRA  531 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n~~  531 (1101)
                      +...|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999987653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.30  E-value=0.0082  Score=51.01  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|...+.....+.|++-  |...            ....++.....+....|.|.+++++|++.|.|.
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeee
Confidence            45788899999999987666677999862  2111            012355666666678899999999999999998


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +..
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.29  E-value=0.0061  Score=51.94  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=50.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....+....|.|.+++++|++.|.|.
T Consensus        10 sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          10 SLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEE
Confidence            4467889999999998766677899986  22211            112345555566678999999999999999996


Q ss_pred             EE
Q psy8139         623 GV  624 (1101)
Q Consensus       623 A~  624 (1101)
                      +.
T Consensus        90 ~~   91 (107)
T d1tjgl1          90 QL   91 (107)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.28  E-value=0.01  Score=51.76  Aligned_cols=75  Identities=15%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             eecCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CE---Eee---------cCCcEEEEe--cCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GF---EIF---------SSRRQRIVT--DNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~---~~~---------~~~~~~~~~--~~~~~~l~I~~l~~  517 (1101)
                      +..+..+.+..|++++|.|...+..  ...+.|++.  |.   .+.         ...++....  ......|.|.++.+
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSE   84 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccc
Confidence            3455677889999999999987643  356899972  21   111         113444433  34567999999999


Q ss_pred             CCCEEEEEEEEeC
Q psy8139         518 MDEGEIKCTATNR  530 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~  530 (1101)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999986553

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.25  E-value=0.0066  Score=52.42  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEE--CCEEe---e------------cCCcEEEEe-cCCeeEEEEeecCCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEI---F------------SSRRQRIVT-DNDISTLIIHQAALM  518 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~g~~~---~------------~~~~~~~~~-~~~~~~l~I~~l~~~  518 (1101)
                      ..|..+.+.+|++++|.|...+. ...+.|++  .+...   .            ...++.... ......|+|.++.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            45677889999999999986543 45789998  22111   0            012232222 234568999999999


Q ss_pred             CCEEEEEEEEeC
Q psy8139         519 DEGEIKCTATNR  530 (1101)
Q Consensus       519 d~g~Y~C~a~n~  530 (1101)
                      |++.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999987653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.25  E-value=0.0076  Score=51.29  Aligned_cols=68  Identities=13%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....+....|.|.+++++|++.|.|.
T Consensus        10 ~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa   89 (107)
T d1mexl1          10 FMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQ   89 (107)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEe
Confidence            3467889999999987766566799996  22211            012456666666778999999999999999997


Q ss_pred             EE
Q psy8139         623 GV  624 (1101)
Q Consensus       623 A~  624 (1101)
                      +.
T Consensus        90 ~~   91 (107)
T d1mexl1          90 QY   91 (107)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.23  E-value=0.0085  Score=51.01  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .+...            .....+....++...+|.|.+|++.|++.|.|.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          10 YLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             eEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEe
Confidence            3467889999999998776666799986  22111            012234445555677899999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        90 ~~~   92 (108)
T d1jhll_          90 QHN   92 (108)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.22  E-value=0.0072  Score=52.16  Aligned_cols=72  Identities=24%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC------C------CCceE--EEeecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT------S------GGRYE--ITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~------~------~~~~~--~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|+.++|.|...+.....+.|++  .|....      .      ..++.  ........+|.|.++++.|+|.|.
T Consensus         9 ~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Yy   88 (113)
T d2bnqd1           9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEe
Confidence            4578889999999998877667899987  222110      0      11222  222345678999999999999999


Q ss_pred             EEEEeCCC
Q psy8139         621 AHGVNSLG  628 (1101)
Q Consensus       621 c~A~N~~G  628 (1101)
                      |.+....+
T Consensus        89 Ca~~~~~~   96 (113)
T d2bnqd1          89 CAVRPTSG   96 (113)
T ss_dssp             EEEEESSS
T ss_pred             EeEecCCC
Confidence            99875544

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.17  E-value=0.015  Score=50.75  Aligned_cols=72  Identities=22%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             cCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--CE---Ee----------e----cCCcEEEEec--CCeeEEEEee
Q psy8139         458 ALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--GF---EI----------F----SSRRQRIVTD--NDISTLIIHQ  514 (1101)
Q Consensus       458 ~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~---~~----------~----~~~~~~~~~~--~~~~~l~I~~  514 (1101)
                      ++..+++.+|++++|.|.+.|..  ...+.|++.  |.   .+          .    ...++.+...  .+...|.|.+
T Consensus         7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~   86 (123)
T d1hxmb1           7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (123)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccc
Confidence            34566788899999999998753  446889972  11   11          0    1235655542  3456899999


Q ss_pred             cCCCCCEEEEEEEEe
Q psy8139         515 AALMDEGEIKCTATN  529 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n  529 (1101)
                      +.++|++.|.|....
T Consensus        87 l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          87 VEKQDIATYYCALWE  101 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccCcEEEEeeeC
Confidence            999999999998754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0087  Score=50.87  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +.+.+|++++|.|...+.....+.|++-  |...            ....++.....+....|.|.+++++|++.|.|.+
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   89 (106)
T d1lk3l1          10 LTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQ   89 (106)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccc
Confidence            4778899999999998766678999862  2111            0134566666667789999999999999999965


Q ss_pred             E
Q psy8139         624 V  624 (1101)
Q Consensus       624 ~  624 (1101)
                      .
T Consensus        90 ~   90 (106)
T d1lk3l1          90 S   90 (106)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.12  E-value=0.027  Score=46.87  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .+|.+...|. ..|..|++|+|.|.... +...+.|+|+|...... .......+....+.|..+...|+|.|+|.....
T Consensus         5 pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            4677777774 46789999999998653 45578899987532211 011122344557889999999999999987654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.015  Score=48.37  Aligned_cols=79  Identities=9%  Similarity=0.032  Sum_probs=49.8

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc--EEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR--QRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..|.+...|.. .|..|++|+|.|.... ....+.++++|........  ......+....+.|.++...|+|.|+|...
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence            45677777744 5889999999998653 3446777787764322110  111123345689999999999999999876


Q ss_pred             eCC
Q psy8139         529 NRA  531 (1101)
Q Consensus       529 n~~  531 (1101)
                      ...
T Consensus        81 ~~~   83 (98)
T d1ugna2          81 DSN   83 (98)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            544

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.01  Score=51.21  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             eeEEccCCeEEEEEEEecc--CCCeEEEEEC--C---EEee------------cCCcEEEEe--cCCeeEEEEeecCCCC
Q psy8139         461 DTTALEDEKVEFTVQVEGI--PTPKVSWYKD--G---FEIF------------SSRRQRIVT--DNDISTLIIHQAALMD  519 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--g---~~~~------------~~~~~~~~~--~~~~~~l~I~~l~~~d  519 (1101)
                      .+.+.+|++++|.|...+.  ....+.|++.  +   ..+.            ..+++.+..  ..+..+|+|.++.++|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            3567789999999987642  3456889972  2   1111            012454443  3445679999999999


Q ss_pred             CEEEEEEEEeC
Q psy8139         520 EGEIKCTATNR  530 (1101)
Q Consensus       520 ~g~Y~C~a~n~  530 (1101)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999987543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.037  Score=45.62  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=43.9

Q ss_pred             ccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecC-C----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139         465 LEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDN-D----ISTLIIHQAALMDEGEIKCTATNRAGH  533 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~-~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~  533 (1101)
                      ..++.++|.|.+.| .|.+.|+|.++|..+............ +    .+.|.+   ...+...|+|.+....-.
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCC
Confidence            35777899999987 698999999999877654332222221 2    113333   345677899999876543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.09  E-value=0.01  Score=50.54  Aligned_cols=69  Identities=16%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .+...            ....++.....+...+|.|.++++.|++.|.|.
T Consensus        10 sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1d5il1          10 SMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEee
Confidence            3467889999999998776677789986  22211            012356666666778999999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +..
T Consensus        90 ~~~   92 (107)
T d1d5il1          90 QYD   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.09  E-value=0.0065  Score=51.41  Aligned_cols=69  Identities=17%  Similarity=0.358  Sum_probs=50.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|....            ...++..........|.|.++++.|++.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            3578889999999988766666789986  222110            12345555566678999999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +.+
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.02  E-value=0.015  Score=50.03  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--C-EE--e---ec---------CCcEEEE-ecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--G-FE--I---FS---------SRRQRIV-TDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g-~~--~---~~---------~~~~~~~-~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|.... ....+.|++.  | .+  +   ..         ..++... .......|.|.++.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            34577778999999999998754 3457999982  2 11  1   00         0111111 122234799999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|++.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.01  Score=51.56  Aligned_cols=71  Identities=13%  Similarity=0.050  Sum_probs=46.9

Q ss_pred             CceeEEccCCeEEEEEEEeccCCC---eEEEEEC--CEE---ee----cC--------CcEEEEecCCeeEEEEeecCCC
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTP---KVSWYKD--GFE---IF----SS--------RRQRIVTDNDISTLIIHQAALM  518 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~--g~~---~~----~~--------~~~~~~~~~~~~~l~I~~l~~~  518 (1101)
                      |..+.+..|++++|.|........   .+.|++.  +..   +.    ..        ........+....|+|.++..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            445678899999999998544333   4889983  211   10    00        0011122344668999999999


Q ss_pred             CCEEEEEEEEe
Q psy8139         519 DEGEIKCTATN  529 (1101)
Q Consensus       519 d~g~Y~C~a~n  529 (1101)
                      |++.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998765

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.01  E-value=0.011  Score=51.06  Aligned_cols=71  Identities=15%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--CeecC------------CCCceEEEe--ecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPLT------------SGGRYEITH--TDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l~------------~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|.........+.|++.  |....            ...++....  ......|.|.+++++|+|.|.
T Consensus        10 ~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY   89 (115)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccce
Confidence            34788899999999988777788999862  21110            122333322  233567999999999999999


Q ss_pred             EEEEeCC
Q psy8139         621 AHGVNSL  627 (1101)
Q Consensus       621 c~A~N~~  627 (1101)
                      |.+....
T Consensus        90 Ca~~~~~   96 (115)
T d1lp9e1          90 CALFLAS   96 (115)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            9876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.01  E-value=0.011  Score=50.37  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCee---c-C--------CCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEP---L-T--------SGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~---l-~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .+..   + .        ...++.....+....|.|.++.++|++.|.|.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA   89 (109)
T d1mqkl_          10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEe
Confidence            4467789999999998766666799997  2221   1 0        12355555566778999999999999999997


Q ss_pred             EE
Q psy8139         623 GV  624 (1101)
Q Consensus       623 A~  624 (1101)
                      +.
T Consensus        90 ~~   91 (109)
T d1mqkl_          90 HH   91 (109)
T ss_dssp             EC
T ss_pred             ee
Confidence            65

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.00  E-value=0.0068  Score=52.25  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE---Eee-------------cCCcEEEEec-CCeeEEEEeecC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF---EIF-------------SSRRQRIVTD-NDISTLIIHQAA  516 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~---~~~-------------~~~~~~~~~~-~~~~~l~I~~l~  516 (1101)
                      ...|..+.+.+|++++|.|...+ ....+.|++.  +.   .+.             ...++..... .....|+|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            34577788999999999998643 3457899982  11   110             1123333322 234689999999


Q ss_pred             CCCCEEEEEEEEe
Q psy8139         517 LMDEGEIKCTATN  529 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n  529 (1101)
                      ++|++.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.011  Score=51.24  Aligned_cols=85  Identities=12%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             CeEEeeCCEEEEEEEEeec---CCCeeEEEECC--eec------------CCCCceEE--EeecceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGM---PPPTARWLHNG--EPL------------TSGGRYEI--THTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~---p~~~v~W~~~g--~~l------------~~~~~~~~--~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|.....   ....+.|++..  ..+            ....+..+  .......+|+|.+|+..|+|
T Consensus         8 ~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG   87 (116)
T d1xeda_           8 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   87 (116)
T ss_dssp             EEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCE
Confidence            4577889999999986432   23467897632  111            01123333  22334578999999999999


Q ss_pred             EEEEEEEeCCCCceeEEEEEEecC
Q psy8139         618 EYQAHGVNSLGEDVASFLVTVTDR  641 (1101)
Q Consensus       618 ~y~c~A~N~~G~~~~s~~l~v~~~  641 (1101)
                      .|.|.+............|+|.+.
T Consensus        88 ~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          88 RYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEEESCGGGCCEEEEEEEEECC
T ss_pred             EEEEEEEcCCCCceEeEEEEEECC
Confidence            999987544333344566666643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.93  E-value=0.025  Score=48.46  Aligned_cols=68  Identities=15%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             eEEeeCCEEEEEEEEeecC--CCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMP--PPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      +.+.+|++++|.|...+..  ...+.|++-  +...            ....++....++....|.|.++++.|++.|.|
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            4778899999999987653  467899962  2111            01235556556678899999999999999999


Q ss_pred             EEEe
Q psy8139         622 HGVN  625 (1101)
Q Consensus       622 ~A~N  625 (1101)
                      .+..
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            8764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.03  Score=48.10  Aligned_cols=70  Identities=19%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEE--CCe-e--c----------CCCCceEEEee--cceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLH--NGE-P--L----------TSGGRYEITHT--DRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~--~g~-~--l----------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|...+. ....+.|++  .|. +  +          ....++.+...  ....+|.|.+++++|+|.
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGI   87 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeE
Confidence            4578899999999998654 346789986  221 1  1          11234555443  235679999999999999


Q ss_pred             EEEEEEeC
Q psy8139         619 YQAHGVNS  626 (1101)
Q Consensus       619 y~c~A~N~  626 (1101)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (114)
T d3bp5a1          88 YLCGAISL   95 (114)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEeC
Confidence            99988654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.91  E-value=0.013  Score=50.03  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|...+.....+.|++  .|...            ....++.....+....|.|.+++++|++.|.|.
T Consensus        12 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          12 SLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEe
Confidence            3467889999999998876667789986  12111            112455666666678899999999999999997


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +..
T Consensus        92 ~~~   94 (109)
T d1bwwa_          92 QYQ   94 (109)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0049  Score=52.91  Aligned_cols=70  Identities=17%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             EeeCCEEEEEEEEee-cCC--CeeEEEECCeecCCCCceE-EEeec---ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139         560 FEMGEIIKLKVSMAG-MPP--PTARWLHNGEPLTSGGRYE-ITHTD---RYLNLRISDARRADRGEYQAHGVNSLGE  629 (1101)
Q Consensus       560 v~~g~~~~l~c~~~g-~p~--~~v~W~~~g~~l~~~~~~~-~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G~  629 (1101)
                      +..|..++|.|.+.+ .|.  +.++|++++..+....... ....+   ..+.+.+.-....+...|+|.|.|..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            567999999999986 453  3689999887764211000 00000   1334555544444555899999998765

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.89  E-value=0.0085  Score=51.66  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECC--E---Eee------------cCCcEEEE-ecCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG--F---EIF------------SSRRQRIV-TDNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~---~~~------------~~~~~~~~-~~~~~~~l~I~~l~  516 (1101)
                      +...|..+.+.+|++++|.|..... ...+.|++..  .   .+.            ...++... ..+....|+|.++.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            3556778889999999999986543 3478999831  1   110            01222222 12334589999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy8139         517 LMDEGEIKCTATNR  530 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n~  530 (1101)
                      ++|++.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          83 LEDSAMYFCASSLR   96 (113)
T ss_dssp             GGGCEEECEEEESS
T ss_pred             cCCceeEEEEeecC
Confidence            99999999987643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.86  E-value=0.0076  Score=52.14  Aligned_cols=73  Identities=14%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE--E-ee---c---------CCcEEEEe-cCCeeEEEEeecCCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF--E-IF---S---------SRRQRIVT-DNDISTLIIHQAALM  518 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~--~-~~---~---------~~~~~~~~-~~~~~~l~I~~l~~~  518 (1101)
                      ..|..+.+.+|++++|.|.... ....+.|++.  |.  . +.   .         ...+.... .+....|+|.++.++
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            4466778999999999999753 4457899972  21  1 10   0         11111111 233457999999999


Q ss_pred             CCEEEEEEEEeC
Q psy8139         519 DEGEIKCTATNR  530 (1101)
Q Consensus       519 d~g~Y~C~a~n~  530 (1101)
                      |++.|.|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999976543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.82  E-value=0.0056  Score=52.19  Aligned_cols=67  Identities=13%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +.+.+|++++|.|.........+.|++  .|...            ....++.....+...+|.|.+++++|++.|.|.+
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   90 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQH   90 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeee
Confidence            356779999999998776667799996  22211            1123444455566789999999999999999965


Q ss_pred             E
Q psy8139         624 V  624 (1101)
Q Consensus       624 ~  624 (1101)
                      .
T Consensus        91 ~   91 (107)
T d3cx5k1          91 H   91 (107)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.013  Score=48.49  Aligned_cols=64  Identities=20%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+..|.+++|.|.........+.|+++|......    .........+.|.++++.+.|+|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            6888999999998644445578899988543221    122344678999999999999999987643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.80  E-value=0.013  Score=48.55  Aligned_cols=77  Identities=12%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .|.+...| ...|..|++++|.|.... ....+.++++|......... ..........|.|.+++..|+|.|.|.....
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            35555555 456889999999999653 34467787766421110000 1111223458999999999999999987654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.80  E-value=0.017  Score=49.73  Aligned_cols=74  Identities=15%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             eecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CE-E--ee------------cCCcEEEE-ecCCeeEEEEeecCC
Q psy8139         456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GF-E--IF------------SSRRQRIV-TDNDISTLIIHQAAL  517 (1101)
Q Consensus       456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~-~--~~------------~~~~~~~~-~~~~~~~l~I~~l~~  517 (1101)
                      ...|..+.+.+|++++|.|.... ....+.|++.  |. +  +.            ....+... ..+....|+|.++.+
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            45577788899999999998643 3457889982  21 1  10            01222222 123345899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy8139         518 MDEGEIKCTATNR  530 (1101)
Q Consensus       518 ~d~g~Y~C~a~n~  530 (1101)
                      +|++.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (113)
T d1j8he1          83 NQTSMYLCASSST   95 (113)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCcccEEeeEccC
Confidence            9999999987643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.78  E-value=0.013  Score=50.23  Aligned_cols=69  Identities=23%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--CeecC-------C-----CCce--EEEeecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPLT-------S-----GGRY--EITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l~-------~-----~~~~--~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|...+.....+.|++-  |....       .     ..+.  .....+...+|.|.+++++|++.|.
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence            45788999999999987665567999862  22110       0     1111  2223345678999999999999999


Q ss_pred             EEEEe
Q psy8139         621 AHGVN  625 (1101)
Q Consensus       621 c~A~N  625 (1101)
                      |.+.-
T Consensus        88 Ca~~~   92 (110)
T d1u3ha1          88 CAASA   92 (110)
T ss_dssp             ECCEE
T ss_pred             eeecC
Confidence            98763

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.74  E-value=0.021  Score=49.00  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             CeEEeeCCEEEEEEEEeecC---CCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP---PPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p---~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+.+.+|++++|.|...+..   ...+.|++  .|...            .....+..........|.|.+|++.|++.|
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            45788899999999977542   34689996  22211            112345555666788999999999999999


Q ss_pred             EEEEEeCC
Q psy8139         620 QAHGVNSL  627 (1101)
Q Consensus       620 ~c~A~N~~  627 (1101)
                      .|.+.+..
T Consensus        89 yCa~~~~~   96 (112)
T d1lgva1          89 YCSSYDGS   96 (112)
T ss_dssp             EEEEECSS
T ss_pred             EEeeecCC
Confidence            99876543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0096  Score=49.71  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEECCee--cCC------------CCceEEEe---ecceEEEEEccCCCCCCeEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEP--LTS------------GGRYEITH---TDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~--l~~------------~~~~~~~~---~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      +....|++++|.|.........+.|++....  +..            ..++....   ..++.+|.|.++++.|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            3567899999999988777889999874321  110            11111111   122457999999999999999


Q ss_pred             EEEEe
Q psy8139         621 AHGVN  625 (1101)
Q Consensus       621 c~A~N  625 (1101)
                      |.+.|
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99854

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.71  E-value=0.013  Score=50.06  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.+.+|++++|.|...+. ....+.|++-  |...            ....++.....++...|.|.++++.|++.|.|
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYC   89 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             eEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEee
Confidence            4578889999999987644 3456889862  2211            01235555556667889999999999999999


Q ss_pred             EEE
Q psy8139         622 HGV  624 (1101)
Q Consensus       622 ~A~  624 (1101)
                      .+.
T Consensus        90 a~~   92 (108)
T d2fx7l1          90 QQY   92 (108)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.034  Score=47.20  Aligned_cols=72  Identities=10%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             ceeEEccCCeEEEEEEEecc--CCCeEEEEEC--CE----Eeec-----------CCcEEEEec--CCeeEEEEeecCCC
Q psy8139         460 HDTTALEDEKVEFTVQVEGI--PTPKVSWYKD--GF----EIFS-----------SRRQRIVTD--NDISTLIIHQAALM  518 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~--g~----~~~~-----------~~~~~~~~~--~~~~~l~I~~l~~~  518 (1101)
                      +...+.+|++++|.|...+.  ......|.+.  |.    .+..           .+++.+..+  .+..+|+|.+|+.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34578899999999998753  4456889983  21    1110           134555433  45568999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy8139         519 DEGEIKCTATNRA  531 (1101)
Q Consensus       519 d~g~Y~C~a~n~~  531 (1101)
                      |+|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999875543

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.68  E-value=0.013  Score=48.96  Aligned_cols=78  Identities=13%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEecc--CCCeEEEEECCEEeecCCcEE-EE-ec-CCeeEEEEeecCCCCCEEEEEE
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSRRQR-IV-TD-NDISTLIIHQAALMDEGEIKCT  526 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~~~~-~~-~~-~~~~~l~I~~l~~~d~g~Y~C~  526 (1101)
                      ||.+...|.. .+..|..++|.|.+.|.  +...|+|.++|..+..+.... .. .. +.-.....-.+.+.+...|+|.
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCK   81 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEE
Confidence            4444433322 24567889999999985  346899999997775321111 11 11 1211222223445667789999


Q ss_pred             EEeC
Q psy8139         527 ATNR  530 (1101)
Q Consensus       527 a~n~  530 (1101)
                      +...
T Consensus        82 V~H~   85 (100)
T d1muja1          82 VEHW   85 (100)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            9865

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.68  E-value=0.022  Score=49.45  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             ecCceeEEccCCeEEEEEEEeccC--CCeEEEEEC--C---EEee-------------cCCcEEEEe--cCCeeEEEEee
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIP--TPKVSWYKD--G---FEIF-------------SSRRQRIVT--DNDISTLIIHQ  514 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g---~~~~-------------~~~~~~~~~--~~~~~~l~I~~  514 (1101)
                      .+|..+....|++++|.|...+..  ...+.|++.  |   ..+.             ...++.+..  ......|+|.+
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~   85 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS   85 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence            344567778999999999876543  346899982  1   1111             112334433  23456899999


Q ss_pred             cCCCCCEEEEEEEEe
Q psy8139         515 AALMDEGEIKCTATN  529 (1101)
Q Consensus       515 l~~~d~g~Y~C~a~n  529 (1101)
                      +.++|++.|.|....
T Consensus        86 l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          86 LEEEDEAIYYCSYGE  100 (120)
T ss_dssp             CCGGGCSEEEEEECC
T ss_pred             cccccceeEEEEEcC
Confidence            999999999997653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.014  Score=50.24  Aligned_cols=67  Identities=22%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             EEeeCCEEEEEEEEeecC-CCeeEEEEC--Cee---c------C---------CCCceEEEeecceEEEEEccCCCCCCe
Q psy8139         559 LFEMGEIIKLKVSMAGMP-PPTARWLHN--GEP---L------T---------SGGRYEITHTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p-~~~v~W~~~--g~~---l------~---------~~~~~~~~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+..|++++|.|...+.. ...+.|++-  |..   +      .         ...++.........+|+|.+++++|+|
T Consensus        11 t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg   90 (114)
T d1akjd_          11 TWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEG   90 (114)
T ss_dssp             CCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCE
Confidence            567799999999987554 456899871  111   0      0         123455555666778999999999999


Q ss_pred             EEEEEEEe
Q psy8139         618 EYQAHGVN  625 (1101)
Q Consensus       618 ~y~c~A~N  625 (1101)
                      .|.|.+..
T Consensus        91 ~YyCa~~~   98 (114)
T d1akjd_          91 YYFCSALS   98 (114)
T ss_dssp             EEEEEEEE
T ss_pred             EEeEeEcC
Confidence            99999864

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.61  E-value=0.011  Score=51.02  Aligned_cols=71  Identities=23%  Similarity=0.343  Sum_probs=50.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--CeecC------------CCCceEEE--eecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPLT------------SGGRYEIT--HTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l~------------~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|.....+...+.|++-  +....            ...++...  ......+|+|.++.++|+|.|.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            45788899999999988777778999962  11110            01223222  2234678999999999999999


Q ss_pred             EEEEeCC
Q psy8139         621 AHGVNSL  627 (1101)
Q Consensus       621 c~A~N~~  627 (1101)
                      |.+.+..
T Consensus        89 Ca~~~~~   95 (114)
T d2cdea1          89 CVVSDRG   95 (114)
T ss_dssp             EEEECSC
T ss_pred             eeeecCC
Confidence            9997653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.021  Score=49.76  Aligned_cols=68  Identities=18%  Similarity=0.320  Sum_probs=48.1

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC---------C-------------CCceEEEe-ecceEEEEEccC
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT---------S-------------GGRYEITH-TDRYLNLRISDA  611 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~---------~-------------~~~~~~~~-~~~~~sl~i~~l  611 (1101)
                      .+.+.+|++++|.|...+.....+.|++  .|..+.         .             ..++.... .+...+|+|.++
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~   89 (122)
T d1nezg_          10 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF   89 (122)
T ss_dssp             CEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred             EEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence            4578899999999999888888899986  222110         0             01222222 233467999999


Q ss_pred             CCCCCeEEEEEEE
Q psy8139         612 RRADRGEYQAHGV  624 (1101)
Q Consensus       612 ~~~~~y~y~c~A~  624 (1101)
                      ++.|+|.|.|.+.
T Consensus        90 ~~~Dsg~YyCa~~  102 (122)
T d1nezg_          90 SKENEGYYFCSVI  102 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCCEEEEeeEe
Confidence            9999999999875

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.031  Score=45.80  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV  624 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~  624 (1101)
                      .+..|.+++|.|... .....+.|+++|....    ...........+.|.++++.+.|.|+|...
T Consensus        14 ~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          14 EVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             cccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeE
Confidence            688899999999864 3456888888775322    122233456789999999999999999753

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.56  E-value=0.017  Score=49.06  Aligned_cols=69  Identities=14%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +.+.+|++++|.|.........+.|++  .|...            ....++.....+...+|.|.+++++|++.|.|.+
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~   89 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQV   89 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEe
Confidence            577889999999987655556799986  22211            0123455556666789999999999999999987


Q ss_pred             EeC
Q psy8139         624 VNS  626 (1101)
Q Consensus       624 ~N~  626 (1101)
                      ...
T Consensus        90 ~~~   92 (109)
T d1w72l1          90 WDS   92 (109)
T ss_dssp             EET
T ss_pred             cCC
Confidence            654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.54  E-value=0.018  Score=49.19  Aligned_cols=70  Identities=16%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.+.+|++++|.|...+. ....+.|++  .|....            ...++.........+|.|.++++.|++.|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence            3578889999999987643 345689986  222110            1122333344557789999999999999999


Q ss_pred             EEEeC
Q psy8139         622 HGVNS  626 (1101)
Q Consensus       622 ~A~N~  626 (1101)
                      .+...
T Consensus        87 a~~~~   91 (110)
T d2esvd1          87 IVVRS   91 (110)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            87643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.005  Score=51.27  Aligned_cols=75  Identities=12%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139         452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN  529 (1101)
Q Consensus       452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n  529 (1101)
                      +|.+...|. ..|..|++|+|.|... .+...+.++++|......... ....+....|.|.++...|+|.|.|....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            566666665 4478999999999964 345567788877532210000 00112335899999999999999998654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.46  E-value=0.028  Score=48.07  Aligned_cols=70  Identities=14%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             CeEEeeCCEEEEEEEEeecC--CCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP--PPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|...+..  ...+.|++-  +...            ....++....++...+|.|.++++.|++.|.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            35788899999999876543  456999852  2111            1124555666667789999999999999999


Q ss_pred             EEEEeC
Q psy8139         621 AHGVNS  626 (1101)
Q Consensus       621 c~A~N~  626 (1101)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            987643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.46  E-value=0.03  Score=47.57  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=49.8

Q ss_pred             eEEeeCCEEEEEEEEeecCC---CeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPP---PTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~---~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      +.+.+|++++|.|...+...   ..+.|++  .|...            ....++.....+....|.|.+++++|++.|.
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Yy   89 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEE
Confidence            46788999999999875432   2388986  22211            1134566666777889999999999999999


Q ss_pred             EEEEe
Q psy8139         621 AHGVN  625 (1101)
Q Consensus       621 c~A~N  625 (1101)
                      |.+..
T Consensus        90 Ca~~~   94 (110)
T d1oaql_          90 CALWY   94 (110)
T ss_dssp             EEEEE
T ss_pred             EEccc
Confidence            98764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.014  Score=50.56  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG  623 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A  623 (1101)
                      +.+.+|++++|.|...+.....+.|++-  +...            ....++.....+....|.|.++++.|++.|.|.+
T Consensus        11 v~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~   90 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ   90 (119)
T ss_dssp             ECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeec
Confidence            3566799999999887665667999862  2111            1123455555556678999999999999999976


Q ss_pred             Ee
Q psy8139         624 VN  625 (1101)
Q Consensus       624 ~N  625 (1101)
                      .+
T Consensus        91 ~~   92 (119)
T d1f3rb2          91 YN   92 (119)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.43  E-value=0.027  Score=48.21  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC-------C-----CCceEE--EeecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT-------S-----GGRYEI--THTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~-------~-----~~~~~~--~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|...+.....+.|++  .|....       .     ..++..  .......+|.|.++.++|++.|.
T Consensus         9 s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1bd2d1           9 SLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF   88 (111)
T ss_dssp             EEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence            3467899999999998776667789986  222110       0     122222  22345788999999999999999


Q ss_pred             EEEE
Q psy8139         621 AHGV  624 (1101)
Q Consensus       621 c~A~  624 (1101)
                      |.+.
T Consensus        89 Ca~~   92 (111)
T d1bd2d1          89 CAAM   92 (111)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            9775

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.43  E-value=0.025  Score=48.48  Aligned_cols=70  Identities=29%  Similarity=0.478  Sum_probs=48.9

Q ss_pred             CeEEeeCCEEEEEEEEeec--CCCeeEEEE--CCe----ecCCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         557 GLLFEMGEIIKLKVSMAGM--PPPTARWLH--NGE----PLTSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~--p~~~v~W~~--~g~----~l~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+.+.+|++++|.|...+.  +...+.|++  .+.    .+....++.....  ....+|+|.++++.|++.|.|.+...
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_           9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeecc
Confidence            3467789999999998754  345799986  222    2233344444332  33468999999999999999998543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.032  Score=46.42  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=42.0

Q ss_pred             ccCCeEEEEEEEecc--CCCeEEEEECCEEeecCCcEEEEecCC--eeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         465 LEDEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~~~~~~~~~~--~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      ..|..++|.|.+.|.  +...|+|.++|..+...........++  -.....-.+...+...|+|.+...
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeC
Confidence            457789999999885  334799999999876543222222222  122233334556677899998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.41  E-value=0.016  Score=49.28  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=50.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.........+.|++  .|...            ....++.....+....|.|.+++++|++.|.|.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            3477889999999987655555789986  22211            012356666666778999999999999999998


Q ss_pred             EEe
Q psy8139         623 GVN  625 (1101)
Q Consensus       623 A~N  625 (1101)
                      +..
T Consensus        88 ~~~   90 (108)
T d1nfde1          88 SSY   90 (108)
T ss_dssp             EEE
T ss_pred             eec
Confidence            753

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.40  E-value=0.03  Score=47.79  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             CeEEeeCCEEEEEEEEeecC----CCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP----PPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|...+.-    ...+.|++  .|...            ....++.....+....|+|.+++++|++.
T Consensus        10 s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~   89 (111)
T d2gsia1          10 SLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAAT   89 (111)
T ss_dssp             EEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCce
Confidence            44788899999999876421    23488986  22211            01245666666677899999999999999


Q ss_pred             EEEEEEe
Q psy8139         619 YQAHGVN  625 (1101)
Q Consensus       619 y~c~A~N  625 (1101)
                      |.|.+.+
T Consensus        90 YyCa~~~   96 (111)
T d2gsia1          90 YYCSHIR   96 (111)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            9997643

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.37  E-value=0.047  Score=46.84  Aligned_cols=69  Identities=22%  Similarity=0.326  Sum_probs=47.5

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec------CC------CCce--EEEeecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL------TS------GGRY--EITHTDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l------~~------~~~~--~~~~~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|++++|.|...+. ...+.|++  .|...      ..      ..++  .........+|.|.+++++|++.|.
T Consensus         9 ~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1           9 FLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             EEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            3578899999999987653 45799986  22211      00      1122  2333445778999999999999999


Q ss_pred             EEEEeC
Q psy8139         621 AHGVNS  626 (1101)
Q Consensus       621 c~A~N~  626 (1101)
                      |.+...
T Consensus        88 Ca~~~~   93 (115)
T d1ogad1          88 CAGAGS   93 (115)
T ss_dssp             EEEECT
T ss_pred             ccccCC
Confidence            987644

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.027  Score=46.91  Aligned_cols=67  Identities=15%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             EccCCeEEEEEEEecc--CCCeEEEEECCEEeecCCcEEEEec--CCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         464 ALEDEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSRRQRIVTD--NDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      +..|..++|.|.+.|.  +...|+|.+||..+..........+  +.-.....-.+.+++...|+|.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            3568888999999985  3347999999998753221111222  22222333344566777899998764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.34  E-value=0.024  Score=48.44  Aligned_cols=71  Identities=25%  Similarity=0.422  Sum_probs=49.4

Q ss_pred             CeEEeeCCEEEEEEEEeec--CCCeeEEEE--CC----eecCCCCceEEEee--cceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         557 GLLFEMGEIIKLKVSMAGM--PPPTARWLH--NG----EPLTSGGRYEITHT--DRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~--p~~~v~W~~--~g----~~l~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      .+.+..|++++|.|...+.  ....+.|++  .|    ..+..+.++.....  ....+|+|.+|++.|++.|.|.+...
T Consensus         8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_           8 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            3467789999999987643  356899997  12    22333444544333  23568999999999999999987644


Q ss_pred             C
Q psy8139         627 L  627 (1101)
Q Consensus       627 ~  627 (1101)
                      .
T Consensus        88 ~   88 (112)
T d1sq2n_          88 G   88 (112)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.26  E-value=0.024  Score=48.74  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEE--CCeecC-------C------CC--ceEEEeecceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLH--NGEPLT-------S------GG--RYEITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~--~g~~l~-------~------~~--~~~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|..... ....+.|++  .+....       .      ..  .......+...+|.|.++.+.|+|.
T Consensus         9 ~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   88 (114)
T d2ak4d1           9 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAV   88 (114)
T ss_dssp             EEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             eEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCC
Confidence            4578899999999986643 455689986  222110       0      01  1222233446789999999999999


Q ss_pred             EEEEEEeCCC
Q psy8139         619 YQAHGVNSLG  628 (1101)
Q Consensus       619 y~c~A~N~~G  628 (1101)
                      |.|.+....+
T Consensus        89 YyCa~~~~~~   98 (114)
T d2ak4d1          89 YFCALSGFYN   98 (114)
T ss_dssp             EEEEEECSBT
T ss_pred             ceEeCCCCCC
Confidence            9998766544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.22  E-value=0.013  Score=50.61  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=47.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC-------C--------CCceEEEeecceEEEEEccCCCCCCeEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT-------S--------GGRYEITHTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~-------~--------~~~~~~~~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+.+.+|++++|.|.........+.|++  .|....       .        .............+|.|.++++.|+|.|
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY   88 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence            3578899999999998876677888986  222110       0        0111222233456799999999999999


Q ss_pred             EEEEEe
Q psy8139         620 QAHGVN  625 (1101)
Q Consensus       620 ~c~A~N  625 (1101)
                      .|.+..
T Consensus        89 yCa~~~   94 (115)
T d1i9ea_          89 FCAVSG   94 (115)
T ss_dssp             EEEEEE
T ss_pred             cccccC
Confidence            997753

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.18  E-value=0.043  Score=46.12  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEEC--Ceec------------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPL------------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH  622 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~  622 (1101)
                      .+.+.+|++++|.|.... ....+.|++-  +...            .....+.....+...+|.|.+++++|++.|.|.
T Consensus         9 ~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1           9 IMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEE
Confidence            446788999999998643 3446889862  2111            012344555556678999999999999999996


Q ss_pred             EE
Q psy8139         623 GV  624 (1101)
Q Consensus       623 A~  624 (1101)
                      +.
T Consensus        88 ~~   89 (104)
T d1yqvl1          88 QW   89 (104)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.019  Score=49.90  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=50.3

Q ss_pred             CeEEeeCCEEEEEEEEeec----CCCeeEEEEC--Cee----c---------C-C----CCceEEEe--ecceEEEEEcc
Q psy8139         557 GLLFEMGEIIKLKVSMAGM----PPPTARWLHN--GEP----L---------T-S----GGRYEITH--TDRYLNLRISD  610 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~----p~~~v~W~~~--g~~----l---------~-~----~~~~~~~~--~~~~~sl~i~~  610 (1101)
                      .+.+..|++++|.|.....    ....+.|.+.  +..    +         . .    .++..+..  ..++.+|.|.+
T Consensus         8 ~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (119)
T d1neua_           8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (119)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECC
Confidence            3467889999999987532    2347999762  111    0         0 0    12223321  23356899999


Q ss_pred             CCCCCCeEEEEEEEeCCCCc--eeEEEEEEe
Q psy8139         611 ARRADRGEYQAHGVNSLGED--VASFLVTVT  639 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N~~G~~--~~s~~l~v~  639 (1101)
                      ++..|+|.|.|.+.+..+..  .....|.|.
T Consensus        88 v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999998865433  333455543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.13  E-value=0.012  Score=50.69  Aligned_cols=75  Identities=16%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             ecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee------------cCCcEEEE-ecCCeeEEEEeecCCC
Q psy8139         457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF------------SSRRQRIV-TDNDISTLIIHQAALM  518 (1101)
Q Consensus       457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~------------~~~~~~~~-~~~~~~~l~I~~l~~~  518 (1101)
                      ..|..+.+.+|++++|.|.... ....+.|++.  |..   +.            ....+... .......|.|.++.++
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            4567788999999999998754 3457899983  111   10            00111111 1223457999999999


Q ss_pred             CCEEEEEEEEeCCC
Q psy8139         519 DEGEIKCTATNRAG  532 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g  532 (1101)
                      |++.|.|.+....+
T Consensus        82 Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          82 HTSQYLCASSENIG   95 (112)
T ss_dssp             TCSEEEEEEECSSS
T ss_pred             ccccEEEEEecCCC
Confidence            99999998875443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.11  E-value=0.031  Score=46.09  Aligned_cols=64  Identities=20%  Similarity=0.423  Sum_probs=44.4

Q ss_pred             CCEEEEEEEEeecCCCeeEEEE--CCeec------C-----CCCceEEE--eecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139         563 GEIIKLKVSMAGMPPPTARWLH--NGEPL------T-----SGGRYEIT--HTDRYLNLRISDARRADRGEYQAHGVNS  626 (1101)
Q Consensus       563 g~~~~l~c~~~g~p~~~v~W~~--~g~~l------~-----~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y~c~A~N~  626 (1101)
                      |++++|.|.........+.|++  .|...      .     ..+++...  ......+|.|.++++.|++.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            6789999998877778899986  22110      1     11233332  2334578999999999999999987643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.08  E-value=0.038  Score=47.19  Aligned_cols=67  Identities=18%  Similarity=0.251  Sum_probs=47.8

Q ss_pred             CeEEeeCCEEEEEEEEeecC-----CCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-----PPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-----~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|...+..     ...+.|++  .|...            ....++.....+....|.|.+++++|++
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA   89 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG   89 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc
Confidence            34677899999999876532     45689986  22211            1123455556666788999999999999


Q ss_pred             EEEEEE
Q psy8139         618 EYQAHG  623 (1101)
Q Consensus       618 ~y~c~A  623 (1101)
                      .|.|..
T Consensus        90 vYyCa~   95 (112)
T d1mjul1          90 VYYCLQ   95 (112)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            999953

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=95.08  E-value=0.038  Score=47.32  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=48.0

Q ss_pred             CeEEeeCCEEEEEEEEeec------CCCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGM------PPPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADR  616 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~------p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~  616 (1101)
                      .+.+.+|++++|.|...+.      ....+.|++  .|...            .....+....++...+|.|.++++.|+
T Consensus        10 ~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Ds   89 (113)
T d1q9ra1          10 SLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDL   89 (113)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCC
Confidence            3477889999999987642      123589986  22211            112345555566678899999999999


Q ss_pred             eEEEEEEE
Q psy8139         617 GEYQAHGV  624 (1101)
Q Consensus       617 y~y~c~A~  624 (1101)
                      +.|.|.+.
T Consensus        90 a~YyCA~~   97 (113)
T d1q9ra1          90 AVYYCKQS   97 (113)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEeccc
Confidence            99999764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.06  E-value=0.018  Score=49.66  Aligned_cols=70  Identities=20%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC------C-------CCceEEEe--ecceEEEEEccCCCCCCeEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT------S-------GGRYEITH--TDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~------~-------~~~~~~~~--~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+.+.+|+.++|.|.........+.|++  .|....      .       ..++....  ......|+|.++++.|++.|
T Consensus         9 ~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEY   88 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEE
T ss_pred             eEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccc
Confidence            4578899999999998876677899996  222110      0       11222222  22345799999999999999


Q ss_pred             EEEEEeC
Q psy8139         620 QAHGVNS  626 (1101)
Q Consensus       620 ~c~A~N~  626 (1101)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1j8hd1          89 FCAVSES   95 (115)
T ss_dssp             EEEEESS
T ss_pred             eeeecCC
Confidence            9998654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.00  E-value=0.028  Score=48.01  Aligned_cols=68  Identities=18%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             eEEeeCCEEEEEEEEeec----CCCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEE
Q psy8139         558 LLFEMGEIIKLKVSMAGM----PPPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~----p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      +.+.+|++++|.|.....    ....+.|++  .|....            ...++.....+....|.|.+++++|++.|
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccE
Confidence            456789999999987532    223499986  232110            12345555556678999999999999999


Q ss_pred             EEEEEe
Q psy8139         620 QAHGVN  625 (1101)
Q Consensus       620 ~c~A~N  625 (1101)
                      .|.+.+
T Consensus        91 yCa~~~   96 (111)
T d1j05a_          91 YCQQTN   96 (111)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            997653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.99  E-value=0.041  Score=46.91  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             CeEEeeCCEEEEEEEEeecC-----CCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-----PPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-----~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|...+..     ...+.|++  .|...            ....++.....+....|.|.+++++|++
T Consensus        10 sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          10 TISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             EEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCE
Confidence            44788899999999875432     34588985  22211            1123455555666789999999999999


Q ss_pred             EEEEEEE
Q psy8139         618 EYQAHGV  624 (1101)
Q Consensus       618 ~y~c~A~  624 (1101)
                      .|.|...
T Consensus        90 vYYC~~~   96 (112)
T d1ncwl1          90 VYYCWQG   96 (112)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEcC
Confidence            9999653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.99  E-value=0.046  Score=47.23  Aligned_cols=71  Identities=18%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             eEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC-----------------CCCceEEEe-ecceEEEEEccCCCCCCe
Q psy8139         558 LLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT-----------------SGGRYEITH-TDRYLNLRISDARRADRG  617 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~-----------------~~~~~~~~~-~~~~~sl~i~~l~~~~~y  617 (1101)
                      +.+.+|++++|.|...+.....+.|++  .|..+.                 ...++.... ......|+|.++.+.|++
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   90 (118)
T d2ij0c1          11 VIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSG   90 (118)
T ss_dssp             EEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCc
Confidence            467889999999998777777899986  222110                 122344432 233567999999999999


Q ss_pred             EEEEEEEeCCC
Q psy8139         618 EYQAHGVNSLG  628 (1101)
Q Consensus       618 ~y~c~A~N~~G  628 (1101)
                      .|.|.+.-..|
T Consensus        91 ~YyCa~~~~~~  101 (118)
T d2ij0c1          91 FYVCSALAGSG  101 (118)
T ss_dssp             EEEEEEECSSC
T ss_pred             eEEEEEecCCC
Confidence            99999865433

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.065  Score=43.88  Aligned_cols=65  Identities=11%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             cCCeEEEEEEEecc-CC-CeEEEEECCEEeecC--CcEEEEecC--CeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         466 EDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSS--RRQRIVTDN--DISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~--~~~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      .++.++|.|.+.|. |. ..|+|.+||..+...  .......++  .-.....-.+.+.+...|+|.+...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            46678999999983 43 489999999987532  112222222  2222333344556667899999875

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.91  E-value=0.039  Score=47.49  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEE--CCeecC---------------CCCceEEEee--cceEEEEEccCCCCCC
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLH--NGEPLT---------------SGGRYEITHT--DRYLNLRISDARRADR  616 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~--~g~~l~---------------~~~~~~~~~~--~~~~sl~i~~l~~~~~  616 (1101)
                      .+.+.+|++++|.|...+. ....+.|++  .|....               ...++.....  ....+|+|.+++++|+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T d1tvda_           9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccc
Confidence            4578899999999987654 467899986  221110               1234544433  2346799999999999


Q ss_pred             eEEEEEEEeCC
Q psy8139         617 GEYQAHGVNSL  627 (1101)
Q Consensus       617 y~y~c~A~N~~  627 (1101)
                      |.|.|.+....
T Consensus        89 g~YyCa~~~~~   99 (116)
T d1tvda_          89 ATYYCAFTLPP   99 (116)
T ss_dssp             EEEEEEEECTT
T ss_pred             ccceeeEecCC
Confidence            99999876543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.84  E-value=0.075  Score=43.68  Aligned_cols=78  Identities=9%  Similarity=0.052  Sum_probs=51.3

Q ss_pred             CCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCc--cccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCc
Q psy8139         362 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE  439 (1101)
Q Consensus       362 ~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~--~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~  439 (1101)
                      ...|+|.|..+.     ....|.|+........+.....  .......|.|.++++.+.|.|+|..........+|..|+
T Consensus        16 G~~VTl~C~~~~-----~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSd   90 (96)
T d1nkra1          16 EETVILQCWSDV-----MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSD   90 (96)
T ss_dssp             TCCEEEEEEESS-----CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCC
T ss_pred             CCcEEEEECCCC-----CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcCCCCCcccCCCC
Confidence            577999998762     2346777654322222222211  112335799999999999999998877665556777788


Q ss_pred             ceEEE
Q psy8139         440 PLTVT  444 (1101)
Q Consensus       440 ~vtv~  444 (1101)
                      ++.+.
T Consensus        91 pLeL~   95 (96)
T d1nkra1          91 PLDIV   95 (96)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            88764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.80  E-value=0.069  Score=45.51  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             eeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEE---ee----c---------CCcEEEEecCCeeEEEEeecC
Q psy8139         455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFE---IF----S---------SRRQRIVTDNDISTLIIHQAA  516 (1101)
Q Consensus       455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~---~~----~---------~~~~~~~~~~~~~~l~I~~l~  516 (1101)
                      +...|..+.+.+|++++|.|...+.....+.|++.  |..   +.    .         ..++..... ....|.|..+.
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~l~l~~~~   82 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-TDTELRLQVAN   82 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-ETTEEEEEEES
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc-cccEEEEecCC
Confidence            34567778889999999999987655568999983  221   11    0         112222111 12378899999


Q ss_pred             CCCCEEEEEEEEe
Q psy8139         517 LMDEGEIKCTATN  529 (1101)
Q Consensus       517 ~~d~g~Y~C~a~n  529 (1101)
                      ++|++.|.|.+..
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999998653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.024  Score=47.96  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             eEEeeCCEEEEEEEEeecC----CCeeEEEECCeecC---C---------CCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMP----PPTARWLHNGEPLT---S---------GGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p----~~~v~W~~~g~~l~---~---------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      +....|+.++|.|......    ...+.|.+++..+.   .         ..+..+. ..++.+|.|.++++.|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEEE
Confidence            4667799999999765322    24678887765431   0         1122222 2235689999999999999999


Q ss_pred             EEEeCCCCc
Q psy8139         622 HGVNSLGED  630 (1101)
Q Consensus       622 ~A~N~~G~~  630 (1101)
                      .+.+..+..
T Consensus        83 ~V~~~~~~~   91 (105)
T d1dr9a1          83 VVLKYEKDA   91 (105)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeCCCCC
Confidence            998765544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.74  E-value=0.034  Score=47.57  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=48.0

Q ss_pred             CeEEeeCCEEEEEEEEeecC-CCeeEEEE--CCeecC------------CCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-PPTARWLH--NGEPLT------------SGGRYEITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.+.+|++++|.|...+.. ...+.|++  .|..+.            ...++.+..+.....|.|.++.+.|++.|.|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence            45788899999999987654 34589997  222211            0123334444456789999999999999999


Q ss_pred             EEEe
Q psy8139         622 HGVN  625 (1101)
Q Consensus       622 ~A~N  625 (1101)
                      .+..
T Consensus        87 a~~~   90 (112)
T d1kgcd1          87 ILPL   90 (112)
T ss_dssp             ECCC
T ss_pred             eEec
Confidence            7654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=94.67  E-value=0.084  Score=43.87  Aligned_cols=66  Identities=9%  Similarity=0.153  Sum_probs=39.0

Q ss_pred             ccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcE-EEEec--CCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         465 LEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQ-RIVTD--NDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~-~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      ..|...+|.|.+.|. | ...|+|.+||..+..+... ....+  +.-.....-.+.+.+...|+|.+...
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            456778999999885 3 3479999999887543111 11111  11112222233345556799998765

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=94.66  E-value=0.069  Score=44.18  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=39.4

Q ss_pred             cCCeEEEEEEEeccCC--CeEEEEECCEEeecCCc---EEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         466 EDEKVEFTVQVEGIPT--PKVSWYKDGFEIFSSRR---QRIVTDNDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       466 ~g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~~~~---~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      .+...+|.|.+.|.-+  ..|+|.++|..+..+..   .....++.-.....-.+...+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3566789999988433  47999999988754311   111112223333444556777889999998753

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.66  E-value=0.054  Score=46.24  Aligned_cols=68  Identities=16%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             CeEEeeCCEEEEEEEEeecC-----CCeeEEEE--CCeec------------CCCCceEEEeecceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-----PPTARWLH--NGEPL------------TSGGRYEITHTDRYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-----~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|...+..     ...+.|++  .|...            ....++.....+...+|+|.+++++|++
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   90 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   90 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCE
Confidence            34678899999999976432     25689986  22211            1123455555666789999999999999


Q ss_pred             EEEEEEE
Q psy8139         618 EYQAHGV  624 (1101)
Q Consensus       618 ~y~c~A~  624 (1101)
                      .|.|...
T Consensus        91 vYyCa~~   97 (113)
T d1n4xl_          91 IYYCFQG   97 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.65  E-value=0.11  Score=44.14  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             EEccCCeEEEEEEEeccCC--CeEEEEEC--CEE------eec-----------CCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIPT--PKVSWYKD--GFE------IFS-----------SRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~--~~v~W~~~--g~~------~~~-----------~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      .+.+|++++|.|.+.|...  ..+.|++.  |+.      +..           ..++.+..+  .+...|.|.+|+++|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            5778999999999987543  35788872  211      111           135555543  344579999999999


Q ss_pred             CEEEEEEEEeC
Q psy8139         520 EGEIKCTATNR  530 (1101)
Q Consensus       520 ~g~Y~C~a~n~  530 (1101)
                      .+.|.|.....
T Consensus        91 tAvYYCAr~~~  101 (123)
T d1mqkh_          91 TAMYYCVRHEY  101 (123)
T ss_dssp             CEEEEEEEEET
T ss_pred             ccceeEEecCC
Confidence            99999976554

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.1  Score=44.06  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             eEEeeCCEEEEEEEEeecC--CCeeEEEEC--Cee---c---------CCCCceEEE--eecceEEEEEccCCCCCCeEE
Q psy8139         558 LLFEMGEIIKLKVSMAGMP--PPTARWLHN--GEP---L---------TSGGRYEIT--HTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p--~~~v~W~~~--g~~---l---------~~~~~~~~~--~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      +...+|++++|.|......  ...+.|++.  +..   +         ....++.+.  ...+..+|.|.+|+++|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            4677899999999865332  346789862  211   0         011233332  234567899999999999999


Q ss_pred             EEEEEeCCC
Q psy8139         620 QAHGVNSLG  628 (1101)
Q Consensus       620 ~c~A~N~~G  628 (1101)
                      .|.......
T Consensus        86 ~C~v~~~~~   94 (108)
T d1hkfa_          86 WCRIYRPSD   94 (108)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEecCCC
Confidence            998765433

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.55  E-value=0.087  Score=43.59  Aligned_cols=67  Identities=10%  Similarity=0.178  Sum_probs=40.3

Q ss_pred             EccCCeEEEEEEEecc--CCCeEEEEECCEEeecCC---cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         464 ALEDEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSR---RQRIVTDNDISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~---~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      +..|...+|.|.+.|.  +...|+|.++|..+..+.   ......++.-.....-.+.+.+...|+|.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            3456788999999986  334799999999875431   111111122122222334455666899999765

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.51  E-value=0.044  Score=45.54  Aligned_cols=64  Identities=13%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             eCCEEEEEEEEeec--CCCeeEEEECCeecCCCCceEEEeecce--EEEEEccCCCCCCeEEEEEEEe
Q psy8139         562 MGEIIKLKVSMAGM--PPPTARWLHNGEPLTSGGRYEITHTDRY--LNLRISDARRADRGEYQAHGVN  625 (1101)
Q Consensus       562 ~g~~~~l~c~~~g~--p~~~v~W~~~g~~l~~~~~~~~~~~~~~--~sl~i~~l~~~~~y~y~c~A~N  625 (1101)
                      .|..++|.|.+.|.  ....|+|.++|..+...........++.  .....-.+.+.+...|+|.+.-
T Consensus        17 ~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H   84 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKH   84 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEEC
T ss_pred             CCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEe
Confidence            36778899999986  3568999999998875432222222211  1111222344555678888754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.023  Score=47.07  Aligned_cols=78  Identities=13%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             CCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcc
Q psy8139         361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  440 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~  440 (1101)
                      ....|+|.|..+.     ....|.|.........+.+..........|.|.++++.+.|.|+|.....  ...+|..|++
T Consensus        17 ~G~~VTL~C~~~~-----~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~--~~~~S~~Sd~   89 (96)
T d1ugna1          17 QGSPVTLRCQGGQ-----ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD--TAGRSESSDP   89 (96)
T ss_dssp             TTCCEEEEEECCT-----TCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET--TTEECCCCCC
T ss_pred             CCCcEEEEEeCCC-----CCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC--CCCccccCCC
Confidence            4678999998762     23457775422111111111112234568999999999999999987542  3345677777


Q ss_pred             eEEEe
Q psy8139         441 LTVTY  445 (1101)
Q Consensus       441 vtv~~  445 (1101)
                      +.+.|
T Consensus        90 leL~V   94 (96)
T d1ugna1          90 LELVV   94 (96)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.45  E-value=0.091  Score=44.69  Aligned_cols=66  Identities=14%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             EEccCCeEEEEEEEeccC--CCeEEEEEC--CEE------eec-----------CCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE------IFS-----------SRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~------~~~-----------~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      .+.+|++++|.|.+.|..  ...+.|++.  |..      +..           ..++.+..+  .+...|+|.+|.++|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            577899999999998753  335788872  211      111           135555543  345579999999999


Q ss_pred             CEEEEEEEE
Q psy8139         520 EGEIKCTAT  528 (1101)
Q Consensus       520 ~g~Y~C~a~  528 (1101)
                      ++.|.|...
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.45  E-value=0.0012  Score=55.19  Aligned_cols=70  Identities=20%  Similarity=0.396  Sum_probs=46.7

Q ss_pred             eEEccCCeEEEEEEEeccCCCeEEEEEC--CEEee------------cCCcEEEEe--cCCeeEEEEeecCCCCCEEEEE
Q psy8139         462 TTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIF------------SSRRQRIVT--DNDISTLIIHQAALMDEGEIKC  525 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~------------~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C  525 (1101)
                      ++|.+|++++|.|..... ...+.|++.  |....            ...++.+..  ......|+|.++.++|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            457789999999987543 346899972  22110            112333222  2334579999999999999999


Q ss_pred             EEEeCCC
Q psy8139         526 TATNRAG  532 (1101)
Q Consensus       526 ~a~n~~g  532 (1101)
                      .+....|
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8876554

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.43  E-value=0.16  Score=42.75  Aligned_cols=69  Identities=14%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             eEEccCCeEEEEEEEeccC--CCeEEEEEC--CEE------ee-----------cCCcEEEEec--CCeeEEEEeecCCC
Q psy8139         462 TTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE------IF-----------SSRRQRIVTD--NDISTLIIHQAALM  518 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~------~~-----------~~~~~~~~~~--~~~~~l~I~~l~~~  518 (1101)
                      ..+.+|++++|.|.+.|..  ...+.|++.  |+.      +.           ...++.+..+  .+...|.|.+|.++
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            3577899999999998753  335788872  211      11           1245666543  34557999999999


Q ss_pred             CCEEEEEEEEeC
Q psy8139         519 DEGEIKCTATNR  530 (1101)
Q Consensus       519 d~g~Y~C~a~n~  530 (1101)
                      |++.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999986543

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=94.41  E-value=0.043  Score=47.31  Aligned_cols=60  Identities=20%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc----------cccCccEEEEcCCCCCceEEEEEE
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP----------HMVEDTELMVSGLEPGWRYQFRIT  763 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~----------~~~~~~~~~i~~L~p~t~Y~~~V~  763 (1101)
                      ..+++.|+|.-+....+.+    .|+|....+..+.....          ...-....+|++|.|+|.|.|+|-
T Consensus        36 ~~tsm~VsW~T~~~~~~~~----~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~T~Y~YrVG  105 (119)
T d1xzwa1          36 EGRGVIISWTTPYDKAGAN----KVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLG  105 (119)
T ss_dssp             SSSCEEEEEEESSCCTTTT----EEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTTCEEEEEEC
T ss_pred             CCCEEEEEEECCCCCCCCC----EEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCCCEEEEEEC
Confidence            4678999999754333332    56666655433332210          001124579999999999999983

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.099  Score=40.19  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             ceeEEccCCeEEEEEEEec-cCCCeEEEEE-CCE---EeecCCc-EE-EEecC--CeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139         460 HDTTALEDEKVEFTVQVEG-IPTPKVSWYK-DGF---EIFSSRR-QR-IVTDN--DISTLIIHQAALMDEGEIKCTATNR  530 (1101)
Q Consensus       460 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~-~g~---~~~~~~~-~~-~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~n~  530 (1101)
                      +...+..|+...|.|.+.- ...|.++|-+ +|.   ++..... .. ....+  ....|.+..+.++|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3456889999999999863 3457899988 332   2222111 11 11122  2346788899999999999999766


Q ss_pred             CCceE
Q psy8139         531 AGHSI  535 (1101)
Q Consensus       531 ~g~~~  535 (1101)
                      .|...
T Consensus        91 s~vie   95 (104)
T d1xaua_          91 SQVIN   95 (104)
T ss_dssp             TEEEE
T ss_pred             hhhee
Confidence            55443

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.39  E-value=0.088  Score=43.43  Aligned_cols=68  Identities=16%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             EccCCeEEEEEEEecc--CCCeEEEEECCEEeecCCcE-EEEec--CCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         464 ALEDEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSRRQ-RIVTD--NDISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~~~-~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ...++.++|.|.+.|.  +...|+|.+||..+...... ....+  +.-.....-.+...+...|+|.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCC
Confidence            3456789999999985  45589999999887533211 11111  221112222344555668999998754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.36  E-value=0.2  Score=42.08  Aligned_cols=69  Identities=13%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             eeEEccCCeEEEEEEEeccCC--CeEEEEEC--CE------Eeec-----------CCcEEEEec--CCeeEEEEeecCC
Q psy8139         461 DTTALEDEKVEFTVQVEGIPT--PKVSWYKD--GF------EIFS-----------SRRQRIVTD--NDISTLIIHQAAL  517 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--g~------~~~~-----------~~~~~~~~~--~~~~~l~I~~l~~  517 (1101)
                      ...+.+|++++|.|.+.|...  ..+.|++.  |+      .+..           ..++.+..+  .+...|.|.+|++
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            345788999999999987544  35788872  21      1111           145555543  4455799999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|...|.|....
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1um5h1          88 EDSAVYYCARSS   99 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecc
Confidence            999999997543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.35  E-value=0.043  Score=46.84  Aligned_cols=69  Identities=13%  Similarity=0.273  Sum_probs=47.7

Q ss_pred             CeEEeeCCEEEEEEEEeecC--CCeeEEEE--CCeecC------------CCCceEEE--eecceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP--PPTARWLH--NGEPLT------------SGGRYEIT--HTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p--~~~v~W~~--~g~~l~------------~~~~~~~~--~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|...+..  ...+.|++  .+....            ...++...  ...+...|.|.++.++|++.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            35788899999999987643  34589986  222210            12334333  33557789999999999999


Q ss_pred             EEEEEEe
Q psy8139         619 YQAHGVN  625 (1101)
Q Consensus       619 y~c~A~N  625 (1101)
                      |.|.+.+
T Consensus        89 YyCA~~~   95 (111)
T d1cd0a_          89 YYCQSYD   95 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9998654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.33  E-value=0.12  Score=43.49  Aligned_cols=65  Identities=14%  Similarity=0.307  Sum_probs=45.2

Q ss_pred             EEccCCeEEEEEEEeccC--CCeEEEEEC--CEE------ee-c----------CCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE------IF-S----------SRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~------~~-~----------~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      .+.+|++++|.|.+.|..  ...+.|++.  |+.      +. .          ..++.+..+  .+...|.|.+|+.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            477899999999998753  345788872  211      11 0          135555543  345579999999999


Q ss_pred             CEEEEEEE
Q psy8139         520 EGEIKCTA  527 (1101)
Q Consensus       520 ~g~Y~C~a  527 (1101)
                      ...|.|..
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999964

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.32  E-value=0.056  Score=46.42  Aligned_cols=70  Identities=10%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             CeEEeeCCEEEEEEEEee-cCCCeeEEEE--CCeecC-------------CCCceEEEe--ecceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAG-MPPPTARWLH--NGEPLT-------------SGGRYEITH--TDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g-~p~~~v~W~~--~g~~l~-------------~~~~~~~~~--~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|.... .....+.|++  .|....             ...++.+..  .....+|.|.+++++|++.
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAV   87 (115)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccccc
Confidence            457889999999998754 3455789986  121110             012333332  3346789999999999999


Q ss_pred             EEEEEEeC
Q psy8139         619 YQAHGVNS  626 (1101)
Q Consensus       619 y~c~A~N~  626 (1101)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1fo0a_          88 YFCAMRGD   95 (115)
T ss_dssp             EEEEEECC
T ss_pred             ccceeecC
Confidence            99987644

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.13  Score=42.07  Aligned_cols=67  Identities=13%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             ccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCcEEEEecCC--eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139         465 LEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATNRA  531 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~--~~~l~I~~l~~~d~g~Y~C~a~n~~  531 (1101)
                      ..|..++|.|.+.|. |. ..|+|.++|..+...........++  -.....-.+...+...|+|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            357789999999984 43 4799999998775433222222222  1223333345566668999987653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.066  Score=45.46  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=42.2

Q ss_pred             EEeeCCEEEEEEEEeecCC---CeeEE--EECCeec----------C--CCCce--EEEeecceEEEEEccCCCCCCeEE
Q psy8139         559 LFEMGEIIKLKVSMAGMPP---PTARW--LHNGEPL----------T--SGGRY--EITHTDRYLNLRISDARRADRGEY  619 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~---~~v~W--~~~g~~l----------~--~~~~~--~~~~~~~~~sl~i~~l~~~~~y~y  619 (1101)
                      .+..|++++|.|.....+.   ..+.|  .+++...          .  ..+++  ......+..+|.|.++++.|+|.|
T Consensus         5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y   84 (110)
T d1ncna_           5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY   84 (110)
T ss_dssp             EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred             EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence            5567999999998864432   22334  3332211          0  01111  122233456899999999999999


Q ss_pred             EEEEEeCC
Q psy8139         620 QAHGVNSL  627 (1101)
Q Consensus       620 ~c~A~N~~  627 (1101)
                      .|.+....
T Consensus        85 ~C~V~~~~   92 (110)
T d1ncna_          85 QCIIHHKK   92 (110)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            99986443

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.17  E-value=0.11  Score=44.24  Aligned_cols=66  Identities=18%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             EccCCeEEEEEEEeccC----CCeEEEEEC--CEE---ee-------------cCCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         464 ALEDEKVEFTVQVEGIP----TPKVSWYKD--GFE---IF-------------SSRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       464 v~~g~~v~L~C~~~g~p----~~~v~W~~~--g~~---~~-------------~~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      +.+|++++|.|.+.|..    ...+.|++.  |..   +.             -..++.+..+  .+...|.|.+++++|
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD   91 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD   91 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence            56699999999987643    246789972  211   10             0245555543  345689999999999


Q ss_pred             CEEEEEEEEe
Q psy8139         520 EGEIKCTATN  529 (1101)
Q Consensus       520 ~g~Y~C~a~n  529 (1101)
                      ++.|.|....
T Consensus        92 sAvYyCAr~~  101 (120)
T d2agjh1          92 TATYYCARTS  101 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEeeEecC
Confidence            9999997543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.16  E-value=0.09  Score=44.58  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeec-------CC--------CCce-EEEeecceEEEEEccCCCCCCeE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPL-------TS--------GGRY-EITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l-------~~--------~~~~-~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+.+.+|++++|.|...+ ....+.|++  .|...       ..        ...+ ..........|+|.+++++|++.
T Consensus        10 ~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            346778999999998764 356799997  22111       00        1112 22233456789999999999999


Q ss_pred             EEEEEEe
Q psy8139         619 YQAHGVN  625 (1101)
Q Consensus       619 y~c~A~N  625 (1101)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9998753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.11  Score=44.68  Aligned_cols=66  Identities=18%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             EEeeCCEEEEEEEEeecCCC---eeEEEE--CCeec-------C--------CCCceEEEeecceEEEEEccCCCCCCeE
Q psy8139         559 LFEMGEIIKLKVSMAGMPPP---TARWLH--NGEPL-------T--------SGGRYEITHTDRYLNLRISDARRADRGE  618 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p~~---~v~W~~--~g~~l-------~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~  618 (1101)
                      .+..|++++|.|........   .+.|++  .|...       .        .........+....+|.|.+++++|++.
T Consensus        10 ~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   89 (117)
T d1dqta_          10 LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGL   89 (117)
T ss_dssp             ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEe
Confidence            56679999999998644332   478987  22211       0        0111123334557789999999999999


Q ss_pred             EEEEEE
Q psy8139         619 YQAHGV  624 (1101)
Q Consensus       619 y~c~A~  624 (1101)
                      |.|.+.
T Consensus        90 YyCa~~   95 (117)
T d1dqta_          90 YLCKVE   95 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999875

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.14  Score=41.92  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             eCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecc-----eEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139         562 MGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDR-----YLNLRISDARRADRGEYQAHGVNSLG  628 (1101)
Q Consensus       562 ~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~G  628 (1101)
                      .++.++|.|.+.| .|.+.|.|.++|..+............+     .+.|.+.   ..+...|+|.+....-
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence            3667889999997 6889999999998876432222221111     2234443   3456788898876543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.13  E-value=0.046  Score=45.40  Aligned_cols=80  Identities=13%  Similarity=-0.002  Sum_probs=49.3

Q ss_pred             CCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcc
Q psy8139         361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP  440 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~  440 (1101)
                      ....|+|.|..+.     ....|.+......................+.|..+...++|.|+|..........+|..|++
T Consensus        19 ~G~~VTL~C~~~~-----~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~Sdp   93 (99)
T d1nkra2          19 AGENVTLSCSSRS-----SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDP   93 (99)
T ss_dssp             TTCEEEEEEEESS-----CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCCCC
T ss_pred             CCCeEEEEECCCC-----CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCCCCCCccCCCCC
Confidence            4678999998763     23357665422111111211111122346789999999999999988776554456777787


Q ss_pred             eEEEe
Q psy8139         441 LTVTY  445 (1101)
Q Consensus       441 vtv~~  445 (1101)
                      +.+.|
T Consensus        94 LeL~V   98 (99)
T d1nkra2          94 LLVSV   98 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.10  E-value=0.064  Score=45.57  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc------c----ccCccEEEEcCCCCCceEEEEE
Q psy8139         700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP------H----MVEDTELMVSGLEPGWRYQFRI  762 (1101)
Q Consensus       700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~------~----~~~~~~~~i~~L~p~t~Y~~~V  762 (1101)
                      ..+++.|+|.-.... +.    -.|+|....+........      .    ..-....+|++|.|+|.|.|+|
T Consensus        30 ~~tsm~VsW~T~~~~-~~----~~V~yg~~~~~~~~~a~~~~~~~~~~~~~~~~~h~v~Lt~L~P~T~Y~YrV   97 (112)
T d2qfra1          30 VGRAMIISWVTMDEP-GS----SAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEV   97 (112)
T ss_dssp             SSSCEEEEEEESSSC-CC----CEEEEEESSSCCCEEEECEEECCBCSSCBCCEEEEEEECSCCTTCEEEEEE
T ss_pred             CCCEEEEEEECCCCC-CC----cEEEEEECCCCCCcEEEEEEEEEEecccCCcEEEEEEECCCCCCCEEEEEE
Confidence            357899999864322 22    244555444332222110      0    0112457999999999999998

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.3  Score=37.16  Aligned_cols=57  Identities=16%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             ccCCeEEEEEEEeccCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139         465 LEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT  528 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~  528 (1101)
                      ..|+.+.|.|.....+.+  .-.|.++|..+.....     .+....+.|..  .+++|.|.|.-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence            467888999988766554  4789999999876432     23334677765  778999999854

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.10  E-value=0.14  Score=43.30  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             EEccCCeEEEEEEEeccCCC--eEEEEEC--CE---E---ee--------c--CCcEEEEec--CCeeEEEEeecCCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIPTP--KVSWYKD--GF---E---IF--------S--SRRQRIVTD--NDISTLIIHQAALMDE  520 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~--~v~W~~~--g~---~---~~--------~--~~~~~~~~~--~~~~~l~I~~l~~~d~  520 (1101)
                      .+.+|++++|.|.+.|....  .+.|++.  |+   -   +.        .  ..++.+..+  .+...|.|.+|.++|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            46789999999999886543  4778873  11   0   11        1  145666544  3455799999999999


Q ss_pred             EEEEEEEEeC
Q psy8139         521 GEIKCTATNR  530 (1101)
Q Consensus       521 g~Y~C~a~n~  530 (1101)
                      ..|.|.....
T Consensus        90 A~YYCAr~~~   99 (119)
T d1kxvc_          90 AMYYCKPSLR   99 (119)
T ss_dssp             EEEEEEEEES
T ss_pred             ceEeeeeccc
Confidence            9999976543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.09  E-value=0.11  Score=44.85  Aligned_cols=68  Identities=16%  Similarity=0.363  Sum_probs=47.7

Q ss_pred             eEEeeCCEEEEEEEEeecC--CCeeEEEE--CCeecC-----------------CCCceEEEee--cceEEEEEccCCCC
Q psy8139         558 LLFEMGEIIKLKVSMAGMP--PPTARWLH--NGEPLT-----------------SGGRYEITHT--DRYLNLRISDARRA  614 (1101)
Q Consensus       558 ~~v~~g~~~~l~c~~~g~p--~~~v~W~~--~g~~l~-----------------~~~~~~~~~~--~~~~sl~i~~l~~~  614 (1101)
                      +...+|+++.|.|.+.|..  ...+.|++  .|..+.                 ...++.+...  .+...|.|.++.+.
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~   90 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence            4667799999999998753  55789986  221110                 1234555542  34567999999999


Q ss_pred             CCeEEEEEEEe
Q psy8139         615 DRGEYQAHGVN  625 (1101)
Q Consensus       615 ~~y~y~c~A~N  625 (1101)
                      |++.|.|.+..
T Consensus        91 Dsa~YyCA~~~  101 (123)
T d1hxmb1          91 DIATYYCALWE  101 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeeeC
Confidence            99999998754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.079  Score=44.22  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             CCCeeeecCceeEEccCCeEEEEEEEeccCC--CeEEEEECCEEeecCCc---EEEEecCCe---eEEEEeecCCCCCEE
Q psy8139         451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPT--PKVSWYKDGFEIFSSRR---QRIVTDNDI---STLIIHQAALMDEGE  522 (1101)
Q Consensus       451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~~~~---~~~~~~~~~---~~l~I~~l~~~d~g~  522 (1101)
                      .+|.+...+.......+..++|.|.+.|.-+  ..|+|.++|..+.....   .....++.-   +.|+|..-.-.....
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            4454433322222234567899999987533  47999999987753211   111111211   233443322234568


Q ss_pred             EEEEEEeCC
Q psy8139         523 IKCTATNRA  531 (1101)
Q Consensus       523 Y~C~a~n~~  531 (1101)
                      |+|.+....
T Consensus        84 ytC~V~H~~   92 (102)
T d1q0xl2          84 YSCQVTHEG   92 (102)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.03  E-value=0.22  Score=41.89  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             eEEccCCeEEEEEEEeccCCC--eEEEEEC--CE------Eeec-----------CCcEEEEec--CCeeEEEEeecCCC
Q psy8139         462 TTALEDEKVEFTVQVEGIPTP--KVSWYKD--GF------EIFS-----------SRRQRIVTD--NDISTLIIHQAALM  518 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~--g~------~~~~-----------~~~~~~~~~--~~~~~l~I~~l~~~  518 (1101)
                      -.+.+|++++|.|.+.|....  .+.|++.  |+      .+..           ..++.+..+  .+...|.|.+|+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            357789999999999885433  4778762  21      1111           135555543  34457999999999


Q ss_pred             CCEEEEEEEEeCCC
Q psy8139         519 DEGEIKCTATNRAG  532 (1101)
Q Consensus       519 d~g~Y~C~a~n~~g  532 (1101)
                      |.+.|.|......+
T Consensus        90 DtAvYYCAr~~~~~  103 (118)
T d2fbjh1          90 DTALYYCARLHYYG  103 (118)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             cceEEEeeEecCCC
Confidence            99999998765443

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.00  E-value=0.099  Score=44.32  Aligned_cols=69  Identities=13%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             eeEEccCCeEEEEEEEeccCC--CeEEEEEC--CE------Eeec-----------CCcEEEEec--CCeeEEEEeecCC
Q psy8139         461 DTTALEDEKVEFTVQVEGIPT--PKVSWYKD--GF------EIFS-----------SRRQRIVTD--NDISTLIIHQAAL  517 (1101)
Q Consensus       461 ~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--g~------~~~~-----------~~~~~~~~~--~~~~~l~I~~l~~  517 (1101)
                      ...+.+|++++|.|.+.|...  ..+.|++.  |+      .+..           ..++.+..+  .+...|.|.+|++
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            346789999999999987543  35788872  21      1111           245566554  3445799999999


Q ss_pred             CCCEEEEEEEEe
Q psy8139         518 MDEGEIKCTATN  529 (1101)
Q Consensus       518 ~d~g~Y~C~a~n  529 (1101)
                      +|.+.|.|....
T Consensus        90 eDtA~YYCAr~~  101 (122)
T d1vgeh1          90 EDTAVYYCARDP  101 (122)
T ss_dssp             GGCEEEEEEEET
T ss_pred             CcceEEEEeecC
Confidence            999999997654

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.98  E-value=0.13  Score=43.22  Aligned_cols=66  Identities=26%  Similarity=0.341  Sum_probs=46.7

Q ss_pred             EEccCCeEEEEEEEeccCC--CeEEEEEC--CEE------eec----------CCcEEEEec--CCeeEEEEeecCCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIPT--PKVSWYKD--GFE------IFS----------SRRQRIVTD--NDISTLIIHQAALMDE  520 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~--~~v~W~~~--g~~------~~~----------~~~~~~~~~--~~~~~l~I~~l~~~d~  520 (1101)
                      .+.+|++++|.|.+.|...  ..+.|++.  |+.      +..          ..++.+..+  .+...|.|.+|.++|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            5788999999999988654  35788872  211      111          246666554  3456799999999999


Q ss_pred             EEEEEEEE
Q psy8139         521 GEIKCTAT  528 (1101)
Q Consensus       521 g~Y~C~a~  528 (1101)
                      ..|.|...
T Consensus        91 AvYYCAr~   98 (117)
T d1c5db1          91 AIYFCTRE   98 (117)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEecc
Confidence            99999643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.90  E-value=0.18  Score=42.72  Aligned_cols=68  Identities=12%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             eEEccCCeEEEEEEEeccC--CCeEEEEEC--CEE------eec-----------CCcEEEEec--CCeeEEEEeecCCC
Q psy8139         462 TTALEDEKVEFTVQVEGIP--TPKVSWYKD--GFE------IFS-----------SRRQRIVTD--NDISTLIIHQAALM  518 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~~------~~~-----------~~~~~~~~~--~~~~~l~I~~l~~~  518 (1101)
                      ..+.+|++++|.|.+.|..  ...+.|++.  |..      +..           ..++.+..+  .+...|.|.+|.++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            3577899999999998754  335788872  221      111           135555543  44567999999999


Q ss_pred             CCEEEEEEEEe
Q psy8139         519 DEGEIKCTATN  529 (1101)
Q Consensus       519 d~g~Y~C~a~n  529 (1101)
                      |...|.|....
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999998653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.13  Score=44.14  Aligned_cols=68  Identities=12%  Similarity=-0.025  Sum_probs=42.2

Q ss_pred             EEccCCeEEEEEEEeccCCC--eE-EEEEC--CE--Eee------------cCCcEEE--EecCCeeEEEEeecCCCCCE
Q psy8139         463 TALEDEKVEFTVQVEGIPTP--KV-SWYKD--GF--EIF------------SSRRQRI--VTDNDISTLIIHQAALMDEG  521 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~--~v-~W~~~--g~--~~~------------~~~~~~~--~~~~~~~~l~I~~l~~~d~g  521 (1101)
                      .+..|++++|.|...+....  .. .|++.  +.  .+.            ...++.+  ....+..+|+|.++.++|++
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            45678999999998654332  23 34442  11  110            1122232  23345568999999999999


Q ss_pred             EEEEEEEeC
Q psy8139         522 EIKCTATNR  530 (1101)
Q Consensus       522 ~Y~C~a~n~  530 (1101)
                      .|.|.+...
T Consensus        91 vYyCa~~~~   99 (118)
T d1yjdc1          91 IYFCKIEVM   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEecc
Confidence            999987543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.87  E-value=0.053  Score=46.55  Aligned_cols=68  Identities=21%  Similarity=0.281  Sum_probs=45.9

Q ss_pred             CeEEeeCCEEEEEEEEeec-CCCeeEEEEC-----Ceec------CC-----------CCceEEEe--ecceEEEEEccC
Q psy8139         557 GLLFEMGEIIKLKVSMAGM-PPPTARWLHN-----GEPL------TS-----------GGRYEITH--TDRYLNLRISDA  611 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~-----g~~l------~~-----------~~~~~~~~--~~~~~sl~i~~l  611 (1101)
                      .+.+.+|++++|.|...+. ....+.|++-     +..+      ..           ..++....  .....+|+|.++
T Consensus         7 ~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   86 (115)
T d2atpb1           7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV   86 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred             cEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeeccc
Confidence            4478889999999998764 4567899862     2211      00           11222222  233567999999


Q ss_pred             CCCCCeEEEEEEE
Q psy8139         612 RRADRGEYQAHGV  624 (1101)
Q Consensus       612 ~~~~~y~y~c~A~  624 (1101)
                      +++|+|.|.|.+.
T Consensus        87 ~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          87 KPEDSDFYFCATV   99 (115)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCCcEEEEeEc
Confidence            9999999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.85  E-value=0.11  Score=43.46  Aligned_cols=70  Identities=13%  Similarity=0.275  Sum_probs=47.9

Q ss_pred             CceeEEccCCeEEEEEEEeccCCC--eEEEEE--CCE------Eeec-----------CCcEEEEec--CCeeEEEEeec
Q psy8139         459 LHDTTALEDEKVEFTVQVEGIPTP--KVSWYK--DGF------EIFS-----------SRRQRIVTD--NDISTLIIHQA  515 (1101)
Q Consensus       459 p~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~--~g~------~~~~-----------~~~~~~~~~--~~~~~l~I~~l  515 (1101)
                      +....+.+|+++.|.|.+.|....  .+.|.+  .|+      .+..           ..++.+..+  .+...|.+.+|
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            334567889999999999875433  577877  121      1111           135666543  44568999999


Q ss_pred             CCCCCEEEEEEEE
Q psy8139         516 ALMDEGEIKCTAT  528 (1101)
Q Consensus       516 ~~~d~g~Y~C~a~  528 (1101)
                      +++|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (116)
T d1mjuh1          87 TSDDSAVYYCANK   99 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCceEEEEccc
Confidence            9999999999643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.79  E-value=0.1  Score=44.15  Aligned_cols=65  Identities=22%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             EEccCCeEEEEEEEeccCCC--eEEEEEC--CEE------eec----------CCcEEEEec--CCeeEEEEeecCCCCC
Q psy8139         463 TALEDEKVEFTVQVEGIPTP--KVSWYKD--GFE------IFS----------SRRQRIVTD--NDISTLIIHQAALMDE  520 (1101)
Q Consensus       463 ~v~~g~~v~L~C~~~g~p~~--~v~W~~~--g~~------~~~----------~~~~~~~~~--~~~~~l~I~~l~~~d~  520 (1101)
                      .+.+|++++|.|.+.|....  .+.|++.  |+.      +..          ..++.+..+  .+...|.|.++.++|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            57789999999999986543  5788872  211      111          245666653  4456799999999999


Q ss_pred             EEEEEEE
Q psy8139         521 GEIKCTA  527 (1101)
Q Consensus       521 g~Y~C~a  527 (1101)
                      +.|.|..
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999943

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.76  E-value=0.066  Score=45.73  Aligned_cols=71  Identities=28%  Similarity=0.451  Sum_probs=46.2

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC------CC----Cce--E-EEeecceEEEEEccCCCCCCeEEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT------SG----GRY--E-ITHTDRYLNLRISDARRADRGEYQA  621 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~------~~----~~~--~-~~~~~~~~sl~i~~l~~~~~y~y~c  621 (1101)
                      .+.+.+|++++|.|...+ ....+.|++  .+....      ..    ...  . ........+|.|.++.++|++.|.|
T Consensus        10 ~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          10 ALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            447888999999998764 345799987  221110      00    000  0 0112235679999999999999999


Q ss_pred             EEEeCCC
Q psy8139         622 HGVNSLG  628 (1101)
Q Consensus       622 ~A~N~~G  628 (1101)
                      .+....+
T Consensus        89 a~~~~~~   95 (113)
T d1h5ba_          89 AAEASSG   95 (113)
T ss_dssp             EEECSSS
T ss_pred             EecCCCC
Confidence            8865443

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.72  E-value=0.16  Score=43.04  Aligned_cols=67  Identities=22%  Similarity=0.426  Sum_probs=46.7

Q ss_pred             EEeeCCEEEEEEEEeecC--CCeeEEEE--CCee------cC-C----------CCceEEEee--cceEEEEEccCCCCC
Q psy8139         559 LFEMGEIIKLKVSMAGMP--PPTARWLH--NGEP------LT-S----------GGRYEITHT--DRYLNLRISDARRAD  615 (1101)
Q Consensus       559 ~v~~g~~~~l~c~~~g~p--~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~sl~i~~l~~~~  615 (1101)
                      .+.+|+++.|.|.+.|..  ...+.|.+  .|..      +. .          .+++.+..+  .+...|.|.+|++.|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            577899999999999865  44677875  2221      11 1          234555543  334569999999999


Q ss_pred             CeEEEEEEEe
Q psy8139         616 RGEYQAHGVN  625 (1101)
Q Consensus       616 ~y~y~c~A~N  625 (1101)
                      ...|.|....
T Consensus        91 tAvYYCAr~~  100 (123)
T d1mqkh_          91 TAMYYCVRHE  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccceeEEecC
Confidence            9999997654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.058  Score=46.78  Aligned_cols=69  Identities=20%  Similarity=0.392  Sum_probs=45.7

Q ss_pred             CeEEeeCCEEEEEEEEeecC-------CCeeEEEECCeecC-----------------CCCceEEEe--ecceEEEEEcc
Q psy8139         557 GLLFEMGEIIKLKVSMAGMP-------PPTARWLHNGEPLT-----------------SGGRYEITH--TDRYLNLRISD  610 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p-------~~~v~W~~~g~~l~-----------------~~~~~~~~~--~~~~~sl~i~~  610 (1101)
                      .+.+.+|+.+.|.|......       ...+.|++.+..-.                 ..+++.+..  ..++.+|.|.+
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD   89 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECC
Confidence            45788899999999875221       24578886422110                 012344433  23467899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy8139         611 ARRADRGEYQAHGVN  625 (1101)
Q Consensus       611 l~~~~~y~y~c~A~N  625 (1101)
                      |++.|+|.|.|.+..
T Consensus        90 v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          90 ARMSDAGRYFFRMEK  104 (121)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEe
Confidence            999999999999864

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.12  Score=42.60  Aligned_cols=78  Identities=14%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             CCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcC---ccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCC
Q psy8139         361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS---PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL  437 (1101)
Q Consensus       361 ~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~---~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~  437 (1101)
                      ....|+|.|..+.     ....|.|..............   ........|.|.++++.+.|.|+|..........+|..
T Consensus        17 ~G~~VTL~C~~~~-----~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~p   91 (98)
T d1ugna2          17 SGGNVTLQCDSQV-----AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLP   91 (98)
T ss_dssp             TTCCEEEEEECSS-----CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCC
T ss_pred             CCCcEEEEeCCCC-----CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCCCCCCccCC
Confidence            3577999998762     234677764322211111111   11123357999999999999999998877665567777


Q ss_pred             CcceEE
Q psy8139         438 SEPLTV  443 (1101)
Q Consensus       438 s~~vtv  443 (1101)
                      |+++.+
T Consensus        92 Sd~LeL   97 (98)
T d1ugna2          92 SDLLEL   97 (98)
T ss_dssp             CCCEEE
T ss_pred             CCcccc
Confidence            777654

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.63  E-value=0.15  Score=43.29  Aligned_cols=67  Identities=13%  Similarity=0.201  Sum_probs=44.6

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC----------------CCCceEEEe-ecceEEEEEccCCCCCCe
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT----------------SGGRYEITH-TDRYLNLRISDARRADRG  617 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~----------------~~~~~~~~~-~~~~~sl~i~~l~~~~~y  617 (1101)
                      .+.+.+|++++|.|.... ....+.|++  .+....                ...++.... .....+|+|.+++++|++
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA   86 (112)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence            346788999999998543 456799986  221100                012232222 223568999999999999


Q ss_pred             EEEEEEE
Q psy8139         618 EYQAHGV  624 (1101)
Q Consensus       618 ~y~c~A~  624 (1101)
                      .|.|.+.
T Consensus        87 ~YyCa~~   93 (112)
T d1kgce1          87 VYLCASS   93 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeee
Confidence            9999875

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.62  E-value=0.17  Score=42.57  Aligned_cols=69  Identities=14%  Similarity=0.248  Sum_probs=47.8

Q ss_pred             eEEccCCeEEEEEEEeccCC--CeEEEEEC--CEE------ee----------cCCcEEEEec--CCeeEEEEeecCCCC
Q psy8139         462 TTALEDEKVEFTVQVEGIPT--PKVSWYKD--GFE------IF----------SSRRQRIVTD--NDISTLIIHQAALMD  519 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--g~~------~~----------~~~~~~~~~~--~~~~~l~I~~l~~~d  519 (1101)
                      ..+.+|++++|.|.+.|...  ..+.|++.  |..      +.          -..++.+..+  .+...|.|.+|+++|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            35778999999999987544  35788872  211      11          1245555543  445689999999999


Q ss_pred             CEEEEEEEEeC
Q psy8139         520 EGEIKCTATNR  530 (1101)
Q Consensus       520 ~g~Y~C~a~n~  530 (1101)
                      .+.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999976443

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=93.58  E-value=0.058  Score=45.83  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CeEEeeCCEEEEEEEEeecCCCeeEEEE--CCeecC------------CCCceEEEe--ecceEEEEEccCCCCCCeEEE
Q psy8139         557 GLLFEMGEIIKLKVSMAGMPPPTARWLH--NGEPLT------------SGGRYEITH--TDRYLNLRISDARRADRGEYQ  620 (1101)
Q Consensus       557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~--~g~~l~------------~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~  620 (1101)
                      .+.+.+|+.++|.|.........+.|++  .|....            ...++....  .+....|.|.++.++|++.|.
T Consensus         9 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   88 (110)
T d1ac6a_           9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY   88 (110)
T ss_dssp             EEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence            4478889999999988766666799987  222110            011232221  233567999999999999999


Q ss_pred             EEEEe
Q psy8139         621 AHGVN  625 (1101)
Q Consensus       621 c~A~N  625 (1101)
                      |.+..
T Consensus        89 CA~~~   93 (110)
T d1ac6a_          89 CALSG   93 (110)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            98764

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.55  E-value=0.31  Score=40.77  Aligned_cols=68  Identities=15%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             eEEccCCeEEEEEEEeccC--CCeEEEEEC--CE------Eee-----------cCCcEEEEec--CCeeEEEEeecCCC
Q psy8139         462 TTALEDEKVEFTVQVEGIP--TPKVSWYKD--GF------EIF-----------SSRRQRIVTD--NDISTLIIHQAALM  518 (1101)
Q Consensus       462 ~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--g~------~~~-----------~~~~~~~~~~--~~~~~l~I~~l~~~  518 (1101)
                      ..+.+|+++.|.|.+.|..  ...+.|.+.  |+      .+.           -..++.+..+  .+...|.+.+|.++
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            4577899999999999854  335788872  21      111           0245555543  44567999999999


Q ss_pred             CCEEEEEEEEe
Q psy8139         519 DEGEIKCTATN  529 (1101)
Q Consensus       519 d~g~Y~C~a~n  529 (1101)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999997543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.092  Score=44.04  Aligned_cols=68  Identities=19%  Similarity=0.346  Sum_probs=39.4

Q ss_pred             ccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcEE---EEec-CC---eeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139         465 LEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQR---IVTD-ND---ISTLIIHQAALMDEGEIKCTATNRAG  532 (1101)
Q Consensus       465 ~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~~---~~~~-~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g  532 (1101)
                      ..++.++|.|.+.|. | ...|.|.++|..+.......   .... +.   .+.|.|..-.-.....|+|.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            456679999999874 4 35799999998875432111   1111 21   11333332222334579999987543