Psyllid ID: psy8218
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | 2.2.26 [Sep-21-2011] | |||||||
| O60488 | 711 | Long-chain-fatty-acid--Co | yes | N/A | 0.986 | 0.316 | 0.559 | 1e-70 | |
| O35547 | 670 | Long-chain-fatty-acid--Co | yes | N/A | 0.986 | 0.335 | 0.555 | 6e-70 | |
| Q9QUJ7 | 711 | Long-chain-fatty-acid--Co | yes | N/A | 0.986 | 0.316 | 0.555 | 6e-70 | |
| O95573 | 720 | Long-chain-fatty-acid--Co | no | N/A | 0.986 | 0.312 | 0.559 | 2e-69 | |
| Q63151 | 720 | Long-chain-fatty-acid--Co | no | N/A | 0.986 | 0.312 | 0.555 | 5e-69 | |
| Q5R668 | 720 | Long-chain-fatty-acid--Co | no | N/A | 0.986 | 0.312 | 0.559 | 6e-69 | |
| Q9CZW4 | 720 | Long-chain-fatty-acid--Co | no | N/A | 0.986 | 0.312 | 0.555 | 1e-68 | |
| Q9CAP8 | 691 | Long chain acyl-CoA synth | yes | N/A | 0.991 | 0.327 | 0.528 | 2e-63 | |
| Q9SJD4 | 720 | Long chain acyl-CoA synth | no | N/A | 0.991 | 0.313 | 0.484 | 2e-60 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | N/A | 0.969 | 0.315 | 0.383 | 4e-38 |
| >sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 265 bits (678), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 163/227 (71%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y + DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 484 TTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 543
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 544 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 603
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN RL +A++ ++ T+ +C +P +E ++L E++E L
Sbjct: 604 FAKSDQSYVISFVVPNQKRLTLLAQQKGVEG-TWVDICNNPAMEAEILKEIREAANAMKL 662
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 663 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMYG 709
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Homo sapiens (taxid: 9606) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 163/227 (71%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y V DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 443 TTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 502
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 503 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 562
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN +L +A++ ++ ++ +C +P +E ++L E++E L
Sbjct: 563 FAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKL 621
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 622 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMYG 668
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 163/227 (71%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y V DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 484 TTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCV 543
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 544 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 603
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN +L +A++ ++ ++ +C +P +E ++L E++E L
Sbjct: 604 FAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKL 662
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 663 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMYG 709
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF- 60
+TGR GAP C+I+L +W+EG Y DKP PRGEILIGG +++ GYYKN KTK DFF
Sbjct: 493 NTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTKADFFE 552
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RW TGDIGE DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK P+++NIC
Sbjct: 553 DENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICA 612
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
Y +S Y + VVPN L E+A K L T+++LC E+E +VL L E ++L
Sbjct: 613 YANSYHSYVIGFVVPNQKELTELARKKGLKG-TWEELCNSCEMENEVLKVLSEAAISASL 671
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FEIP ++L E W+P+ GLVT AFKLKRK+++ YQ +I RMY
Sbjct: 672 EKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMYG 718
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins). Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 159/227 (70%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF- 60
+TGR GAP C+I+L +W+EG Y DKP PRGEILIGG N++ GYYKN KTK DFF
Sbjct: 493 NTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFFE 552
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RW TGDIGE DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK P+I+NIC
Sbjct: 553 DENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICA 612
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
Y +S Y + VVPN L E+A + T+++LC E+E +VL L E ++L
Sbjct: 613 YANSYHSYVIGFVVPNQKELTELARTKGFNG-TWEELCNSSEMENEVLKVLSEAAISASL 671
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FEIP ++L + W+P+ GLVT AFKLKRK+++ YQ +I RMY
Sbjct: 672 EKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMYG 718
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 159/227 (70%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF- 60
+TGR GAP C+I+L +W+EG Y DKP PRGEILIGG ++ GYYKN KTK DFF
Sbjct: 493 NTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTKADFFE 552
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RW TGDIGE DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK P+++NIC
Sbjct: 553 DENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICA 612
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
Y +S Y + VVPN L E+A K L T+++LC E+E +VL L E ++L
Sbjct: 613 YANSYHSYVIGFVVPNQKELTELARKKGLKG-TWEELCNSCEMENEVLKVLSEAAISASL 671
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FEIP ++L E W+P+ GLVT AFKLKRK+++ YQ +I RMY
Sbjct: 672 EKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMYG 718
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 158/227 (69%), Gaps = 2/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF- 60
+TGR GAP C+I+L +W+EG Y DKP PRGEILIGG N++ GYYKN KTK DFF
Sbjct: 493 NTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFFE 552
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RW TGDIGE DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK P+I+NIC
Sbjct: 553 DENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICA 612
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
Y +S Y + VVPN L E+A T+++LC E+E +VL L E ++L
Sbjct: 613 YANSYHSYVIGFVVPNQKELTELARTKGFKG-TWEELCNSSEMENEVLKVLSEAAISASL 671
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FEIP ++L + W+P+ GLVT AFKLKRK+++ YQ +I RMY
Sbjct: 672 EKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMYG 718
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 152/227 (66%), Gaps = 1/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
S GR GAP ++LVDW EG Y DKP PRGEI+IGGSNI+ GY+KN KTKE +
Sbjct: 465 SVGRVGAPLPCSFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 524
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE+G RWF TGDIG H DG + IIDRKKD+VKLQ GEYVSLGKVEA L P +ENI V
Sbjct: 525 DEKGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMV 584
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ DS Y VALVV + ++ A K +D F++LCT + K+V L + K+S L
Sbjct: 585 HADSFYSYCVALVVASQHTVEGWASKQGIDFANFEELCTKEQAVKEVYASLVKAAKQSRL 644
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FEIP +KL + W+P+ GLVTAA KLKR I+ + ++ ++YA
Sbjct: 645 EKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRREFSEDLTKLYA 691
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 155/227 (68%), Gaps = 1/227 (0%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+ GR G P ++LV W+EG YR+ DKP PRGEI++GG++++ GY+ N KT E +
Sbjct: 494 AVGRVGPPLPCGYVKLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE+G RWF TGDIG H DG + +IDRKKD+VKLQ GEYVSLGKVEA L + ++NI V
Sbjct: 554 DEKGTRWFYTGDIGRFHPDGCLEVIDRKKDIVKLQHGEYVSLGKVEAALGSSNYVDNIMV 613
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ D Y VALVVP+ L++ AE+ + F +LC E K+V L + GK + L
Sbjct: 614 HADPINSYCVALVVPSRGALEKWAEEAGVKHSEFAELCEKGEAVKEVQQSLTKAGKAAKL 673
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+FE+P +KL SE W+P+ GLVTAA K+KR+ I+ +++ E++++YA
Sbjct: 674 EKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSKFKDELSKLYA 720
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 3/224 (1%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
TG G+P C+++LVD E NY D+P PRGEI + G I GYYK+ +TKE DE
Sbjct: 467 TGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKE-VIDE 525
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
+G W TGDIG G ++IIDRKK++ KL GEY++ K+E C + +YG
Sbjct: 526 DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYG 583
Query: 123 DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLER 182
DS VA+V +P LK A + ++LC +P ++ VL ++ G+++ L
Sbjct: 584 DSFNSSLVAVVSVDPDVLKSWAASEGIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRG 643
Query: 183 FEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
FE AV L E ++ + GL+T FK+KR +E + I MY
Sbjct: 644 FEFAKAVTLVLEPFTLENGLLTPTFKIKRPQAKEYFAEAITNMY 687
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| 270007743 | 749 | hypothetical protein TcasGA2_TC014440 [T | 0.986 | 0.300 | 0.751 | 3e-99 | |
| 91083237 | 712 | PREDICTED: similar to lethal (2) 44DEa C | 0.986 | 0.316 | 0.751 | 5e-99 | |
| 242021237 | 703 | Long-chain-fatty-acid--CoA ligase, putat | 0.982 | 0.318 | 0.744 | 1e-97 | |
| 350409745 | 707 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.321 | 0.744 | 2e-97 | |
| 350409738 | 715 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.317 | 0.744 | 3e-97 | |
| 340718224 | 715 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.317 | 0.744 | 3e-97 | |
| 340718226 | 707 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.321 | 0.744 | 4e-97 | |
| 383858798 | 715 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.317 | 0.753 | 9e-97 | |
| 380028136 | 715 | PREDICTED: long-chain-fatty-acid--CoA li | 0.995 | 0.317 | 0.722 | 1e-95 | |
| 289742803 | 714 | acyl-CoA synthetase [Glossina morsitans | 1.0 | 0.319 | 0.692 | 4e-95 |
| >gi|270007743|gb|EFA04191.1| hypothetical protein TcasGA2_TC014440 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 169/225 (75%), Positives = 197/225 (87%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
GR GA TTVCDI+LV+W+EGNYRV DKPFPRGEI++GG NIS GYYK +KT EDF D +
Sbjct: 525 GRVGATTTVCDIKLVNWEEGNYRVTDKPFPRGEIILGGDNISAGYYKLSSKTDEDFTDVD 584
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
G+RWFRTGDIGE+H DGV++IIDRKKDLVKLQAGEYVSLGKVEA+LKTCP+++NICVYGD
Sbjct: 585 GRRWFRTGDIGEIHPDGVVKIIDRKKDLVKLQAGEYVSLGKVEAQLKTCPLVDNICVYGD 644
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
S K + VALVVPN +LKE+A K + SL+F++LC PE+EK V+ EL EHGKKS LE+F
Sbjct: 645 SSKQFCVALVVPNQQQLKELAAKKGVGSLSFEELCQSPEMEKVVIAELMEHGKKSKLEKF 704
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
E+P AVKL +EVWSPDMGLVTAAFKLKRKDIQERY+HEINRMYAS
Sbjct: 705 ELPAAVKLVTEVWSPDMGLVTAAFKLKRKDIQERYKHEINRMYAS 749
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91083237|ref|XP_966686.1| PREDICTED: similar to lethal (2) 44DEa CG8732-PB isoform 1 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 169/225 (75%), Positives = 197/225 (87%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
GR GA TTVCDI+LV+W+EGNYRV DKPFPRGEI++GG NIS GYYK +KT EDF D +
Sbjct: 488 GRVGATTTVCDIKLVNWEEGNYRVTDKPFPRGEIILGGDNISAGYYKLSSKTDEDFTDVD 547
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
G+RWFRTGDIGE+H DGV++IIDRKKDLVKLQAGEYVSLGKVEA+LKTCP+++NICVYGD
Sbjct: 548 GRRWFRTGDIGEIHPDGVVKIIDRKKDLVKLQAGEYVSLGKVEAQLKTCPLVDNICVYGD 607
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
S K + VALVVPN +LKE+A K + SL+F++LC PE+EK V+ EL EHGKKS LE+F
Sbjct: 608 SSKQFCVALVVPNQQQLKELAAKKGVGSLSFEELCQSPEMEKVVIAELMEHGKKSKLEKF 667
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
E+P AVKL +EVWSPDMGLVTAAFKLKRKDIQERY+HEINRMYAS
Sbjct: 668 ELPAAVKLVTEVWSPDMGLVTAAFKLKRKDIQERYKHEINRMYAS 712
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242021237|ref|XP_002431052.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] gi|212516281|gb|EEB18314.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 197/227 (86%), Gaps = 3/227 (1%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
+TGR GAP CDIRLVDW+EGNYRV DKP+PRGEILIGG+N+S GYYK P KTKEDFF+
Sbjct: 480 TTGRVGAPAIGCDIRLVDWEEGNYRVKDKPYPRGEILIGGTNVSSGYYKLPEKTKEDFFE 539
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E G++WF+TGDIGE+H DG +IIDRKKDLVKLQAGEYVSLGKVEAELKTCP++ENIC+Y
Sbjct: 540 ENGRQWFKTGDIGEVHPDGSFKIIDRKKDLVKLQAGEYVSLGKVEAELKTCPLVENICIY 599
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K +TVALVVPNPS+L+++A N TF++LC ++EK VL EL++H KK LE
Sbjct: 600 GDSSKHFTVALVVPNPSQLRQLAGNPN---ATFEELCQDVKMEKAVLNELEKHAKKCKLE 656
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
+FE+P AVKLC+EVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS
Sbjct: 657 KFEVPAAVKLCAEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 703
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350409745|ref|XP_003488831.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 191/227 (84%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGR G PTT+CDIRL +W+E YRV D P+PRGEILIGG+N+S GYYK P KTKEDFF
Sbjct: 481 STGRVGGPTTICDIRLENWEEAGYRVTDTPYPRGEILIGGANVSAGYYKLPDKTKEDFFY 540
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GK+WFRTGDIGE+H+DG I+IIDRKKDLVKLQ GEYVSLGKVEAELKTCPV+ENICVY
Sbjct: 541 EDGKQWFRTGDIGEIHEDGCIKIIDRKKDLVKLQLGEYVSLGKVEAELKTCPVVENICVY 600
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K YTVALVVPN L++IA L + ++LC +P+IEK VL EL E KK NL+
Sbjct: 601 GDSHKSYTVALVVPNQYYLEQIANDLGITGKNLEELCDNPDIEKAVLQELVEQAKKCNLQ 660
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
RFEIP AVKLC+E WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 661 RFEIPGAVKLCAEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 707
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350409738|ref|XP_003488830.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 191/227 (84%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGR G PTT+CDIRL +W+E YRV D P+PRGEILIGG+N+S GYYK P KTKEDFF
Sbjct: 489 STGRVGGPTTICDIRLENWEEAGYRVTDTPYPRGEILIGGANVSAGYYKLPDKTKEDFFY 548
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GK+WFRTGDIGE+H+DG I+IIDRKKDLVKLQ GEYVSLGKVEAELKTCPV+ENICVY
Sbjct: 549 EDGKQWFRTGDIGEIHEDGCIKIIDRKKDLVKLQLGEYVSLGKVEAELKTCPVVENICVY 608
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K YTVALVVPN L++IA L + ++LC +P+IEK VL EL E KK NL+
Sbjct: 609 GDSHKSYTVALVVPNQYYLEQIANDLGITGKNLEELCDNPDIEKAVLQELVEQAKKCNLQ 668
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
RFEIP AVKLC+E WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 669 RFEIPGAVKLCAEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 715
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340718224|ref|XP_003397571.1| PREDICTED: long-chain-fatty-acid--CoA ligase 4-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 191/227 (84%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGR G PTT+CDIRL +W+E YRV D P+PRGEILIGG+N+S GYYK P KTKEDFF
Sbjct: 489 STGRVGGPTTICDIRLENWEEAGYRVTDTPYPRGEILIGGANVSAGYYKLPDKTKEDFFY 548
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GK+WFRTGDIGE+H+DG I+IIDRKKDLVKLQ GEYVSLGKVEAELKTCPV+ENICVY
Sbjct: 549 EDGKQWFRTGDIGEIHEDGCIKIIDRKKDLVKLQLGEYVSLGKVEAELKTCPVVENICVY 608
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K YTVALVVPN L++IA L + ++LC +P+IEK VL EL E KK NL+
Sbjct: 609 GDSHKSYTVALVVPNQYYLEQIANDLGITGKNLEELCDNPDIEKAVLQELVEQAKKCNLQ 668
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
RFEIP AVKLC+E WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 669 RFEIPGAVKLCAEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 715
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340718226|ref|XP_003397572.1| PREDICTED: long-chain-fatty-acid--CoA ligase 4-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 191/227 (84%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGR G PTT+CDIRL +W+E YRV D P+PRGEILIGG+N+S GYYK P KTKEDFF
Sbjct: 481 STGRVGGPTTICDIRLENWEEAGYRVTDTPYPRGEILIGGANVSAGYYKLPDKTKEDFFY 540
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GK+WFRTGDIGE+H+DG I+IIDRKKDLVKLQ GEYVSLGKVEAELKTCPV+ENICVY
Sbjct: 541 EDGKQWFRTGDIGEIHEDGCIKIIDRKKDLVKLQLGEYVSLGKVEAELKTCPVVENICVY 600
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K YTVALVVPN L++IA L + ++LC +P+IEK VL EL E KK NL+
Sbjct: 601 GDSHKSYTVALVVPNQYYLEQIANDLGITGKNLEELCDNPDIEKAVLQELVEQAKKCNLQ 660
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
RFEIP AVKLC+E WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 661 RFEIPGAVKLCAEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 707
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858798|ref|XP_003704886.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 171/227 (75%), Positives = 188/227 (82%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGR GAPTTVCDIRL +W+E YRV D P PRGEI+IGG+N+S GYYK P KTKEDFF
Sbjct: 489 STGRVGAPTTVCDIRLENWEEAGYRVTDTPHPRGEIVIGGANVSAGYYKLPDKTKEDFFQ 548
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GK+WFRTGDIGE H DG I+IIDRKKDLVKLQ GEYVSLGKVEAELKTCPV+ENICVY
Sbjct: 549 EDGKQWFRTGDIGEFHSDGSIKIIDRKKDLVKLQLGEYVSLGKVEAELKTCPVVENICVY 608
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K +TVALVVPN L+EIA L T ++LC +PE+EK VL EL E KK LE
Sbjct: 609 GDSHKTHTVALVVPNTYYLEEIASNLGYKGKTIEELCCNPEVEKMVLQELIEQAKKCKLE 668
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
RFEIP AVKLC+E WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 669 RFEIPGAVKLCAEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 715
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380028136|ref|XP_003697765.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/227 (72%), Positives = 190/227 (83%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
S GR G PTT+CDIRLV+W++ YRV D P+PRGEI+IGG NIS GYYK P KTKEDFF
Sbjct: 489 SIGRVGGPTTICDIRLVNWEDAGYRVTDVPYPRGEIVIGGENISAGYYKLPDKTKEDFFQ 548
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+GKRWFRTGDIGE+H+DG I+IIDRKKDLVKLQ GEYVSLGK+EAELKTCP++ENICVY
Sbjct: 549 EDGKRWFRTGDIGEIHEDGCIKIIDRKKDLVKLQFGEYVSLGKIEAELKTCPIVENICVY 608
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS K +TVAL+VPN L++IA+ L + +F++LC EIEK VL EL E KK L+
Sbjct: 609 GDSYKTFTVALIVPNAFYLEQIAKNLGITGKSFEELCNDSEIEKAVLQELIEQAKKCKLQ 668
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
R+EIP A+KLCSE WSPDMGLVTAAFKLKRK +QERYQHEINRMYAS
Sbjct: 669 RYEIPAAIKLCSEQWSPDMGLVTAAFKLKRKAVQERYQHEINRMYAS 715
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289742803|gb|ADD20149.1| acyl-CoA synthetase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 158/228 (69%), Positives = 196/228 (85%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
M GR GAP T+CD+RLV+W+EGNYRV +KP+P+GE+LIGG +S GYYK P+KT EDFF
Sbjct: 487 MQYGRTGAPLTICDVRLVNWEEGNYRVTNKPYPQGEVLIGGECVSMGYYKLPSKTSEDFF 546
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
+E+GKRWF+TGDIGE+H DGV++IIDRKKDLVKLQAGEYVSLGKVE+ELKTC ++ENICV
Sbjct: 547 EEDGKRWFKTGDIGEMHPDGVLKIIDRKKDLVKLQAGEYVSLGKVESELKTCTLVENICV 606
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
YGD K YTVALVVPN L+E+A++ LDS +F+ LC++P +EK V+ E+ EH KK L
Sbjct: 607 YGDPTKQYTVALVVPNQKHLEELAQRNGLDSKSFEDLCSNPLMEKTVIKEIAEHAKKCKL 666
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
+++E+P A+ LC EVWSPDMGLVTAAFKLKRKDIQ++YQH+INRMYAS
Sbjct: 667 QKYEVPAAITLCKEVWSPDMGLVTAAFKLKRKDIQDKYQHDINRMYAS 714
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| FB|FBgn0263120 | 717 | Acsl "Acyl-CoA synthetase long | 1.0 | 0.317 | 0.692 | 3.2e-88 | |
| ZFIN|ZDB-GENE-050420-181 | 713 | acsl3a "acyl-CoA synthetase lo | 0.991 | 0.316 | 0.565 | 4.4e-68 | |
| UNIPROTKB|Q2QC87 | 670 | ACSL4 "Uncharacterized protein | 0.982 | 0.334 | 0.566 | 6.5e-67 | |
| UNIPROTKB|O60488 | 711 | ACSL4 "Long-chain-fatty-acid-- | 0.982 | 0.315 | 0.561 | 8.2e-67 | |
| UNIPROTKB|F1ND19 | 674 | ACSL4 "Uncharacterized protein | 0.982 | 0.332 | 0.572 | 1.1e-66 | |
| UNIPROTKB|F1MBW3 | 722 | ACSL4 "Uncharacterized protein | 0.982 | 0.310 | 0.557 | 1.7e-66 | |
| UNIPROTKB|F1PEH9 | 670 | ACSL4 "Uncharacterized protein | 0.982 | 0.334 | 0.557 | 2.2e-66 | |
| UNIPROTKB|F1P451 | 720 | ACSL3 "Uncharacterized protein | 0.991 | 0.313 | 0.547 | 3.6e-66 | |
| MGI|MGI:1354713 | 711 | Acsl4 "acyl-CoA synthetase lon | 0.982 | 0.315 | 0.557 | 3.6e-66 | |
| RGD|69401 | 670 | Acsl4 "acyl-CoA synthetase lon | 0.982 | 0.334 | 0.557 | 3.6e-66 |
| FB|FBgn0263120 Acsl "Acyl-CoA synthetase long-chain" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 158/228 (69%), Positives = 193/228 (84%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
M+ GR G P TVCDIRLV+W+EGNYRV +KP+P+GE+LIGG +S GYYK P KT EDFF
Sbjct: 490 MTYGRTGGPLTVCDIRLVNWEEGNYRVTNKPYPQGEVLIGGECVSQGYYKLPGKTNEDFF 549
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
+E+G+RWF+TGDIGE+ DGV++IIDRKKDLVKLQAGEYVSLGKVE+ELKTC +IENICV
Sbjct: 550 EEDGQRWFKTGDIGEIQADGVLKIIDRKKDLVKLQAGEYVSLGKVESELKTCGIIENICV 609
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
YGD K YTVALVVPN + L+E+A+K L +F++LC+ P IEK +L E+ EH +K L
Sbjct: 610 YGDPTKQYTVALVVPNQNHLEELAQKHGLGDKSFEELCSSPIIEKAILKEIAEHARKCKL 669
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
+++E+P A+ LC EVWSPDMGLVTAAFKLKRKDIQ+RYQH+INRMYAS
Sbjct: 670 QKYEVPAAITLCKEVWSPDMGLVTAAFKLKRKDIQDRYQHDINRMYAS 717
|
|
| ZFIN|ZDB-GENE-050420-181 acsl3a "acyl-CoA synthetase long-chain family member 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 129/228 (56%), Positives = 167/228 (73%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF- 60
STGR GAP C+++L DW EG Y D P PRGEIL+GG +I+ GYYKN KT EDFF
Sbjct: 486 STGRVGAPLVCCELQLKDWIEGGYHSTDLPCPRGEILVGGPSITMGYYKNTHKTSEDFFV 545
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D++G+RWF TGDIGE+H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+++NIC
Sbjct: 546 DKKGQRWFCTGDIGEIHGDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLVDNICA 605
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
Y +S + Y + VVPN +L +AE+ + L +++LC +P IE+ VL L E + L
Sbjct: 606 YANSDESYVIGFVVPNQKQLLALAERKRVRGL-WEELCNNPVIEEAVLTVLTEAALTAQL 664
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
ERFEIP ++L E W+PD GLVT +FKLKRK+++ YQ++I RMY +
Sbjct: 665 ERFEIPRKIRLSVEPWTPDTGLVTDSFKLKRKELKTHYQNDIERMYGA 712
|
|
| UNIPROTKB|Q2QC87 ACSL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 128/226 (56%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y V DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 443 TTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 502
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 503 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 562
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN RL +A++ ++ T+ +C +P +E ++L E++E L
Sbjct: 563 FAKSDQSYVISFVVPNQQRLTLLAQQKGVEG-TWVDICNNPAMEAEILKEIREAANTMKL 621
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 622 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
|
|
| UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 127/226 (56%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y + DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 484 TTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 543
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 544 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 603
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN RL +A++ ++ T+ +C +P +E ++L E++E L
Sbjct: 604 FAKSDQSYVISFVVPNQKRLTLLAQQKGVEG-TWVDICNNPAMEAEILKEIREAANAMKL 662
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 663 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708
|
|
| UNIPROTKB|F1ND19 ACSL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 130/227 (57%), Positives = 163/227 (71%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
STGR GAP C+IRL DW EG Y DKP PRGEI+IGG N+S GY+KN KT EDF
Sbjct: 446 STGRVGAPLICCEIRLRDWQEGGYTNRDKPNPRGEIIIGGPNVSMGYFKNEEKTTEDFTI 505
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK C +I+NIC
Sbjct: 506 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCSLIDNICA 565
Query: 121 YGDSR-KDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSN 179
Y S + Y ++ VVPN +L +AE+ + T+ ++C +P +E ++L E++E K
Sbjct: 566 YAKSSDQSYVISFVVPNQKKLTALAEQKGISG-TWVEICNNPTMEAEILREIKEVANKMK 624
Query: 180 LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
LERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y ++I RMY
Sbjct: 625 LERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLNDIERMY 671
|
|
| UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 126/226 (55%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y + DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 495 TTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKTAEDYSV 554
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 555 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 614
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN +L +A++ ++ T+ +C +P +E ++L E++E L
Sbjct: 615 FAKSDQSYVISFVVPNQQKLTLLAQQKGVEG-TWVDICNNPAMEAEILKEIREAANTMKL 673
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 674 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 719
|
|
| UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 126/226 (55%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y + DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 443 TTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 502
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 503 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 562
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN RL +A++ ++ ++ +C +P +E ++L E++E L
Sbjct: 563 FAKSDQSYVISFVVPNQKRLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAASAMKL 621
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 622 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
|
|
| UNIPROTKB|F1P451 ACSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 126/230 (54%), Positives = 164/230 (71%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L++W+EG Y DKP+PRGEILIGG N++ GYYKN +T++DF
Sbjct: 489 TTGRVGAPLVCCEIKLLNWEEGGYYNTDKPYPRGEILIGGQNVTVGYYKNEGRTRKDFTI 548
Query: 61 DEEGKRWFRTGDIGELHQDGVIRII--DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
DE G+RW TGDIGE HQDG ++II DRKKDLVKLQAGEYVSLGKVEA LK P+++NI
Sbjct: 549 DENGQRWLHTGDIGEFHQDGCLKIIAIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNI 608
Query: 119 CVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKS 178
C Y S Y + VVPN L E+A K T++++C E+EK+VL L E +
Sbjct: 609 CAYASSFHSYVIGFVVPNQKELAELARKKGFKG-TWEEICNSSEMEKEVLKVLAEAAMAA 667
Query: 179 NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
NLE+FEIP ++L + W+P+ GLVT AFKLKRK++ YQ +I+RMY +
Sbjct: 668 NLEKFEIPVKIRLSPDPWTPETGLVTDAFKLKRKELTAYYQKDIDRMYGT 717
|
|
| MGI|MGI:1354713 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 126/226 (55%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y V DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 484 TTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCV 543
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 544 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 603
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN +L +A++ ++ ++ +C +P +E ++L E++E L
Sbjct: 604 FAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKL 662
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 663 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 708
|
|
| RGD|69401 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 126/226 (55%), Positives = 163/226 (72%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF-F 60
+TGR GAP C+I+L DW EG Y V DKP PRGEI+IGG NIS GY+KN KT ED+
Sbjct: 443 TTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 502
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE G+RWF TGDIGE H DG ++IIDRKKDLVKLQAGEYVSLGKVEA LK CP+I+NIC
Sbjct: 503 DENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICA 562
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ S + Y ++ VVPN +L +A++ ++ ++ +C +P +E ++L E++E L
Sbjct: 563 FAKSDQSYVISFVVPNQKKLTLLAQQKGVEG-SWVDICNNPAMEAEILKEIREAANAMKL 621
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
ERFEIP V+L E W+P+ GLVT AFKLKRK+++ Y +I RMY
Sbjct: 622 ERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9CAP8 | LACS9_ARATH | 6, ., 2, ., 1, ., 3 | 0.5286 | 0.9912 | 0.3270 | yes | N/A |
| O60488 | ACSL4_HUMAN | 6, ., 2, ., 1, ., 3 | 0.5594 | 0.9868 | 0.3164 | yes | N/A |
| Q9QUJ7 | ACSL4_MOUSE | 6, ., 2, ., 1, ., 3 | 0.5550 | 0.9868 | 0.3164 | yes | N/A |
| O35547 | ACSL4_RAT | 6, ., 2, ., 1, ., 3 | 0.5550 | 0.9868 | 0.3358 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 228 | |||
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-114 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-94 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 7e-57 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-55 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-50 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-48 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-46 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-45 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 3e-34 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-33 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 5e-30 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-27 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-26 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-22 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-21 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 5e-21 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 3e-20 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-19 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-19 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-19 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-19 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-18 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-18 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-18 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 5e-18 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-17 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 4e-17 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-17 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-16 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-16 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-16 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 5e-16 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 8e-16 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 9e-16 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-15 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-15 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 3e-15 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 4e-15 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 6e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 7e-15 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 8e-15 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 8e-15 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-14 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-14 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-14 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-14 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-14 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 6e-14 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-13 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-13 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-13 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 7e-13 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-12 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-12 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 1e-12 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 2e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-12 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-12 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 5e-12 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-12 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 7e-12 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 7e-12 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-11 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-11 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 1e-11 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-11 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-11 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-11 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-11 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 3e-11 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-11 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-11 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 9e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-10 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-10 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-10 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-10 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-10 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-10 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 5e-10 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 6e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 6e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-09 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-09 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-09 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-09 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-09 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 3e-09 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 3e-09 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 4e-09 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 5e-09 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 5e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-09 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-09 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 9e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-08 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-08 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-08 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 5e-08 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 9e-08 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-07 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-07 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-07 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-07 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-07 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 5e-07 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 5e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 7e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 8e-07 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 8e-07 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-06 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-06 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 3e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-06 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 7e-06 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 9e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-05 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 1e-05 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 3e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 4e-05 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-05 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 5e-05 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 9e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 9e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 3e-04 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 0.002 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 0.002 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 0.003 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.003 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 0.004 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-114
Identities = 108/226 (47%), Positives = 149/226 (65%), Gaps = 4/226 (1%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
+TG G P C+I+LVD E Y D P PRGEI I G N+ GYYKNP KT E F
Sbjct: 318 TTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAF- 375
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DE+G WF TGDIGE DG ++IIDRKK+L KL GEYV+L K+E K+ P+++ ICV
Sbjct: 376 DEDG--WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV 433
Query: 121 YGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
YGDS K + VA+VVP+ L++ A + F++LC + +++K +L +L E GK++ L
Sbjct: 434 YGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGL 493
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
+ FEI A+ L E ++P+ GL+T FKLKR +++RY+ EI+ MY
Sbjct: 494 KGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 1e-94
Identities = 114/228 (50%), Positives = 153/228 (67%), Gaps = 1/228 (0%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF- 59
S GR G P C ++LV W+EG Y + DKP PRGEI+IGG +++ GY+KN KT E +
Sbjct: 469 TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK 528
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENIC 119
DE G RWF TGDIG+ H DG + IIDRKKD+VKLQ GEYVSLGKVEA L P ++NI
Sbjct: 529 VDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIM 588
Query: 120 VYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSN 179
V+ D Y VALVVP+ L++ A+K +D F +LC E K+V L + K +
Sbjct: 589 VHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAAR 648
Query: 180 LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
LE+FEIP +KL E W+P+ GLVTAA KLKR+ I+++++ ++ ++Y
Sbjct: 649 LEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696
|
Length = 696 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 7e-57
Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
+G G+P C+++LVD E NY D+P+PRGEI + G I GYYK+ +T+E D
Sbjct: 426 LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTRE-VID 484
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+G W TGDIG G ++IIDRKK++ KL GEY++ K+E C + VY
Sbjct: 485 EDG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVY 542
Query: 122 GDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLE 181
GDS VA+VV +P LK A + +QLC P + VL ++ G+++ L
Sbjct: 543 GDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLR 602
Query: 182 RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
FE AV L E ++ + GL+T FK+KR + + I+ MYA
Sbjct: 603 GFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYA 648
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-55
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 15/217 (6%)
Query: 21 DEGNYRVCDKPFP--------RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGD 72
D KP P GEIL+ G N+ GYYKNP T E F E+G WFRTGD
Sbjct: 399 DRFVLGTVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAE-AFTEDG--WFRTGD 455
Query: 73 IGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVAL 132
+GEL +DG + I RKK+L+KL G+ ++ +E++L P+IE ICV GD +K + VAL
Sbjct: 456 LGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK-FLVAL 514
Query: 133 VVPNPSRLKEIAEKLNLD-SLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKL 191
+VP+ L++ AE LN S + ++L P++ K +L + + K+ L FE L
Sbjct: 515 IVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKR--LFGFEQIKKFVL 572
Query: 192 CSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
+ ++P+ G +T KLKR I +RY+ EI +Y+
Sbjct: 573 LPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609
|
Length = 613 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-50
Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 6/224 (2%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G GAP ++RL + E Y +P PRGEI + G + GYYKNP T+E D
Sbjct: 436 GTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMKDG- 493
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
WF TGDIGE+ +GV++IIDRKK+L+KL GEYV+L +E P++E+I VYGD
Sbjct: 494 ---WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD 550
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
S K VA+VVPN + A K N + +F++LC+ PE+++ +L EL+ +K+ L F
Sbjct: 551 SFKSMLVAVVVPNEENTNKWA-KDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGF 609
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E V L ++ + + LVTA K +R ++ + YQ EI+ MY
Sbjct: 610 EYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653
|
Length = 660 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-48
Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 20/211 (9%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P ++R+ + GEIL+ G N+ GYYKNP T E DE+
Sbjct: 266 GTVGKPLPGVEVRIAE--------------DGEILVRGPNVMKGYYKNPEATAEAL-DED 310
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
G W TGDIG L +DG + I DRKKDL+ G+ ++ +E LK P I V GD
Sbjct: 311 G--WLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGD 368
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
R Y AL+V +P L++ AE+ L T+ L PE+ + E++E + L R
Sbjct: 369 DRP-YLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANAR--LARV 425
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDI 214
E L + +S + G +T KL+R+ +
Sbjct: 426 EQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-46
Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 8/229 (3%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
+ G +++L+D +E Y+ D P PRGEIL+ G + GYYK T+E
Sbjct: 476 LEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQEELTRE-VL 532
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN--I 118
DE+G WF TGD+G + +G +RII R K L K GEY++L +EA ++ +
Sbjct: 533 DEDG--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGV 590
Query: 119 CVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKS 178
CV + Y ALV+ + ++ A++ ++ + + PE +K+ LQE + +
Sbjct: 591 CVLVHPARSYICALVLTDEAKAMAFAKEHGIEG-EYPAILKDPEFQKKATESLQETARAA 649
Query: 179 NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
+ FEI V++ S+ W+P+ G++TAA KLKR+ I ERY I ++A
Sbjct: 650 GRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFA 698
|
Length = 700 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 4e-45
Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P T + RL E Y PRGEI + G+ + GY+K T+E D
Sbjct: 436 GTVGVPMTTIEARLESVPEMGYDALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVLIDG- 493
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
WF TGDIGE +G ++IIDRKK++ KL GEYV++ +E CP+I +I VYG+
Sbjct: 494 ---WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGN 550
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
S + + VA+VVP+ L++ A N F+ LC + + K +L EL GKK L F
Sbjct: 551 SFESFLVAVVVPDRQALEDWAANNNKTG-DFKSLCKNLKARKYILDELNSTGKKLQLRGF 609
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
E+ A+ L + + L+T FKLKR + + Y+ I+++Y+
Sbjct: 610 EMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYS 653
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 6/225 (2%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P DIRL E Y PRGEI I G + GYYK TKE D
Sbjct: 439 GTVGPPVPNVDIRLESVPEMEYDALAST-PRGEICIRGKTLFSGYYKREDLTKEVLIDG- 496
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
W TGD+GE +G ++IIDRKK++ KL GEYV++ +E ++++ VYG+
Sbjct: 497 ---WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGN 553
Query: 124 SRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERF 183
S + + VA+ PN L+ A + N S + LC + + ++ +L EL + K+ ++ F
Sbjct: 554 SFESFLVAIANPNQQILERWAAE-NGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGF 612
Query: 184 EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228
EI A+ L + + L+T FK KR + + YQ I+ MY +
Sbjct: 613 EIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKT 657
|
Length = 666 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-33
Identities = 64/187 (34%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEILI + GYYK+P KT E F E+G W TGD GE+ +DG ++I R K+L K
Sbjct: 343 GEILIRSPGLMSGYYKDPEKTAEAF-TEDG--WLHTGDKGEIDEDGFLKITGRVKELFKT 399
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPS-RLKEIAEKLNLDSLT 153
G+YV+ +E L P +E +CV G VALVV + + E E
Sbjct: 400 SKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ-PVALVVLSEAADPLEREE-------- 450
Query: 154 FQQLCTHPEIEKQVLVELQEHGKKSN--LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKR 211
V LQ+ K N LE E +A+ + E W+ + GL+T K+KR
Sbjct: 451 -------------VEESLQQTLAKVNSELESHERLSALVVVKEAWTVENGLLTPTLKIKR 497
Query: 212 KDIQERY 218
+++ Y
Sbjct: 498 NVVEKHY 504
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-30
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
+ G G P +++++D +EG P GE+ I G ++ GY +P T E F
Sbjct: 299 VKPGSIGRPLPGVEVKVLD-EEGEP---VPPGEVGELCIRGPGVARGYLNDPELTAERF- 353
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
E+G +RTGD+G +DG + I+ RK D VK+ GE + G++EA L P + V
Sbjct: 354 VEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI-RGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 65/227 (28%), Positives = 95/227 (41%), Gaps = 41/227 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P ++R+VD D G P GEI + G N+ GY+ P T E FDE+
Sbjct: 346 GSVGRPLPGVEVRIVDPDGGE----VLPGEVGEIWVRGPNVMKGYWNRPEATAE-AFDED 400
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W RTGD+G + +DG + I+ R KDL+ GE + ++EA L P + V G
Sbjct: 401 G--WLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGV 457
Query: 123 -DSRKDYT-VALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
D R VA+VV P + EL+ +K L
Sbjct: 458 PDERWGERVVAVVVLKP-----------------------GGDAELTAEELRAFLRK-RL 493
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
+++P V D TA+ K+ R+ ++E Y+ E
Sbjct: 494 ALYKVP------RIVVFVDELPRTASGKIDRRALREEYRAEPRLDLK 534
|
Length = 534 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-26
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G P ++D ++G P GE++I G +SPGY NP KT + FF +EG+R
Sbjct: 275 GYPKPGLRALILD-EDGR---PVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQR 330
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV---YGD 123
W+RTGD+ L DG++ + RK +KL G + L ++EA L+ P +E V
Sbjct: 331 WYRTGDLVYLEDDGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEAVVLPVPKG 389
Query: 124 SRKDYTVALVVPNPSRL--KEIAEKL 147
+ VA VV L K + ++L
Sbjct: 390 EKVVRLVAFVVGKEGALDTKALKKEL 415
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-22
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 47/217 (21%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDF 59
G G P ++++VD +G P GEI + G ++ GYY +P T E
Sbjct: 172 PGTVGRPLPGVEVKIVD-PDGG------EVPPGEVGEICVRGYSVMKGYYNDPEATAEAI 224
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENIC 119
D +G W TGD+G + +DG +RI+ R KD++ + GE + ++E L T P +
Sbjct: 225 -DADG--WLHTGDLGYMDEDGYLRIVGRIKDMII-RGGENIYPAEIEEALLTHPAVAEAA 280
Query: 120 VYG--DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKK 177
V G D R VA V LK A LT + EL +
Sbjct: 281 VVGVPDERLGEVVAAFV----VLKPGAT------LTEE--------------ELIAF-CR 315
Query: 178 SNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDI 214
L RF++P V+ E+ TA+ K+++ +
Sbjct: 316 GRLARFKVPRYVRFVDELP------RTASGKIQKFKL 346
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 35/204 (17%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P ++R+VD D G + GEI + G N+ Y+ P T E F E+
Sbjct: 258 GTVGLPLPGVEVRIVDEDGGEPLAAGEV---GEIQVRGPNVFSEYWNKPEATAEAF-TED 313
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
G WF+TGD+G + +DG RI+ RK D + G VS ++E L P + + V G
Sbjct: 314 G--WFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGV 371
Query: 124 SRKDY---TVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
D+ VA+VVP +LT +L + L
Sbjct: 372 PDPDWGEAVVAVVVPEAGA-----------ALTLAELRAW---------------AREKL 405
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVT 204
++IP V + E+ MG V
Sbjct: 406 APYKIPKRVIVVDELPRNAMGKVQ 429
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 5e-21
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 15 IRLVDWDEGNYRVCDKPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTG 71
+R+VD + + P GE ILIGG + GY +P KT E D +G W+ TG
Sbjct: 971 VRIVDPETF------EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTG 1024
Query: 72 DIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN----ICVYG--DSR 125
D G L +DG + I DR K+ GE V LG VE EL + V D +
Sbjct: 1025 DKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAK--ALGGEEVVFAVTAVPDEK 1081
Query: 126 KDYTVALVVPN----PSRLKEIAEKLNLDSL 152
K + ++ LK ++ L +L
Sbjct: 1082 KGEKLVVLHTCGAEDVEELKRAIKESGLPNL 1112
|
Length = 1146 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGK 65
G P ++R+VD +EG P GE+++ G + GY+ NP +T E+G
Sbjct: 171 VGRPVPGVEVRVVD-EEGKPL---PPGEVGELVVRGPWVMKGYWNNPPETTA-AATEDG- 224
Query: 66 RWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG--- 122
W+RTGD+G L ++G + I R KDL+K+ GE V +VE+ L P + V G
Sbjct: 225 -WYRTGDLGYLDEEGYLYITGRSKDLIKV-GGENVYPAEVESVLLQHPAVAEAAVVGVPD 282
Query: 123 DSRKDYTVALVVPNP 137
+ R + VA VV P
Sbjct: 283 EDRGERIVAFVVLRP 297
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-19
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 32/163 (19%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
GR ++R+VD D+GN P GE+ + G + GY P T+ F
Sbjct: 265 GRPVPG---VEVRIVD-DDGN------DVPPGEEGELQVRGPQLFLGYLDPPDNTEA--F 312
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
++G WFRTGD+G L DG +RI RKKD++ ++ GE +S ++E L P + + V
Sbjct: 313 TDDG--WFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369
Query: 121 YG--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160
D R V A+VVP P SLT +L H
Sbjct: 370 VAMPDERLGERVCAVVVPAPGA-----------SLTLAELTEH 401
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G P D R++D + G P GEI++ G + GY+ P T E F + +GKR
Sbjct: 254 GIPVFGTDARVIDPETGEEL---PPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKR 310
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG--DS 124
+FRTGD+G + ++G +DR K ++ + +G V +VEA L P + +CV G D
Sbjct: 311 FFRTGDLGYIDEEGYFFFLDRVKRMINV-SGYKVWPAEVEALLYQHPAVLEVCVIGRPDP 369
Query: 125 RKDYTV-ALVVPNPSRLKEIAE 145
R+ V A VV P ++ E
Sbjct: 370 RRGEVVKAFVVLKPDYRGKVTE 391
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 4e-19
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
S G +P T ++ W+ Y+ D P+GE+LI +I GY+ +TK F +
Sbjct: 514 SIGGPISPNT--KYKVRTWE--TYKATDTL-PKGELLIKSDSIFSGYFLEKEQTKNAFTE 568
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
+ +F+TGDI +++++G + +DR K LVKL GEY+ + I VY
Sbjct: 569 D---GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVY 625
Query: 122 GDSRKDYTVALVVPNPSR----LKE--------IAEKLNLDSLTFQQLCTHPEIEKQVLV 169
GD D +A++ + LK+ I EK L+ LT + + + V
Sbjct: 626 GDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETI-NNNIYVDYVKG 684
Query: 170 ELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKR 211
++ E KK+NL R+ I N + L S+VW + L T FK+KR
Sbjct: 685 KMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYL-TPTFKVKR 725
|
Length = 746 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 7e-19
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFF-DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
GE+ IGG ++ GY+ +P T E F G+R +RTGD+G DG I + R VK
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 94 LQAGEYVSLGKVEAELKTCPVIENICV--YGDSRKDYTVALVVPNP 137
++ G V LG++EA L P ++ V GD A VV
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAED 431
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-18
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
S GR ++VD ++G + P RGE+ + G I GY NP TKE D
Sbjct: 317 SVGRLVPNVEA---KIVD-EDGGKSL--GPNERGELCVKGPQIMKGYLNNPEATKE-TID 369
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
E+G W TGDIG +DG I+DRKK+L+K + G V ++EA L P + + V
Sbjct: 370 EDG--WLHTGDIGYFDEDGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVI 426
Query: 122 GDSRKDYT---VALVVPNP 137
G + A VV P
Sbjct: 427 GIPDEVAGELPRAYVVLKP 445
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-18
Identities = 50/119 (42%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G AG PT R+VD D+GN C P GE+L+ G N+SPGY++ P T F +
Sbjct: 306 GAAGIPTPTVQTRVVD-DQGND--CPAGVP-GELLLRGPNLSPGYWRRPQATAR-AFTGD 360
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G WFRTGDI DG ++DRKKD+ + GE V ++EA L P I V G
Sbjct: 361 G--WFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416
|
Length = 488 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-18
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 45/216 (20%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P ++ ++D D+G P GEI+I G N++ GY NP +E F D
Sbjct: 172 GSVGRPA-GVEVAILD-DDGRPL---PPGQEGEIVIRGPNVTAGYLNNPEANREAFRD-- 224
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
WFRTGD+G L +DG + + R K+L+ + GE +S +VE L P + V+G
Sbjct: 225 --GWFRTGDLGYLDEDGYLFLTGRIKELIN-RGGEKISPREVEEVLLRHPAVAEAVVFGV 281
Query: 124 SRKDY---TVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
+ Y A VV I EL++ +K L
Sbjct: 282 PDELYGEEVAAAVVLRADSKVTIE-------------------------ELRDFARK-RL 315
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216
F++P + + P A K++R+ + E
Sbjct: 316 AAFKVPKKILFVDAL--P----KGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-18
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEIL+ G ++ GY T DE+G WF TGD+G L +G + ++ R+ DL+ +
Sbjct: 261 GEILVRGPSLFLGYLPQGGLTPP--LDEDG--WFHTGDLGYLDAEGYLYVLGRRDDLI-I 315
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYT-----VALVVPNPSRLKEIAEKLNL 149
GE + ++EA L P +E V G D VA VVPN
Sbjct: 316 SGGENIYPEEIEAVLLQHPAVEEAAVVG--VPDDEWGQRPVAFVVPN------------- 360
Query: 150 DSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKL 209
+ + ELQ L +++ P E+ A+ K+
Sbjct: 361 ----------DDPVSVE---ELQAFLADK-LAKYKRPKRWYPLPEL------PRNASGKI 400
Query: 210 KRKDIQE 216
R +++
Sbjct: 401 DRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 21/155 (13%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
STGRA A +IR+ D G + P +GEI + G ++ GY+K+P KT E F+
Sbjct: 320 STGRALAHV---EIRIAD-GAGRWL---PPNMKGEICMRGPKVTKGYWKDPEKTAEAFYG 372
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
+ WFR+GD+G L ++G + + DRKKD++ + GE ++ +VE + P + V
Sbjct: 373 D----WFRSGDVGYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVI 427
Query: 122 G--DSR-KDYTVALVVPNPSRLKEIAEKLNLDSLT 153
G D R + A+VV NP L L++L
Sbjct: 428 GVHDDRWGERITAVVVLNP------GATLTLEALD 456
|
Length = 497 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-17
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 21/126 (16%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKT 55
GR P ++R+VD DEGN P GE+++ G ++ YYK+P KT
Sbjct: 341 AKQGR---PVPGVELRIVD-DEGN------ELPWDGKTVGELVVRGPWVTGSYYKDPEKT 390
Query: 56 KEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP-V 114
+E D WFRTGD+ + +DG I+I DR KD++K GE++S ++E L P V
Sbjct: 391 EELTRD----GWFRTGDVAVIDEDGYIQITDRAKDVIK-SGGEWISSVELENALMAHPAV 445
Query: 115 IENICV 120
E V
Sbjct: 446 AEAAVV 451
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-17
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G AG P C++++ + V PF GEI++ G N++ GY T+E F D
Sbjct: 307 GSAGKPLFPCELKIEK----DGVVV-PPFEEGEIVVKGPNVTKGYLNREDATRETFQDG- 360
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
WF+TGDIG L ++G + ++DR+ DL+ + GE + ++E L + P + V G
Sbjct: 361 ---WFKTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLSHPGVAEAGVVG 415
|
Length = 483 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-16
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G PT D R++D + + P GEI++ G + GY+ P T E F + +
Sbjct: 360 GIPTFGVDARVIDPETL------EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID 413
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
GKR+FRTGD+G + ++G I DR K ++ +G V +VE L P I+ CV
Sbjct: 414 GKRFFRTGDLGRMDEEGYFFITDRLKRMIN-ASGFKVWPAEVENLLYKHPAIQEACVIAT 472
Query: 123 -DSRKDYTV-ALVVPNP 137
D R+ TV A+VV P
Sbjct: 473 PDPRRGETVKAVVVLRP 489
|
Length = 546 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRT 70
++R+V + + P GE +L+ G N+ GY N KT + G W+ T
Sbjct: 321 EVRIVSPETH------EELPIGEGGLLLVRGPNVMSGYLNNEEKTS--EVEVLGDGWYDT 372
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTV 130
GDIG++ +DG + I+ R K K+ GE VSL VE L + + V
Sbjct: 373 GDIGKIDEDGFLTIVGRLKRFAKI-GGEMVSLTAVEELLS--------EILPEDSLHAAV 423
Query: 131 ALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVK 190
VP+ + EK+ L L T +++ + EL +++ L +P +
Sbjct: 424 E--VPDEKK----GEKIVL-------LTTTEDLDPE---ELNAILREAGLPNLAVPRKIL 467
Query: 191 LCSEVWSPDMG 201
E+ P +G
Sbjct: 468 HVDEI--PLLG 476
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-16
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 14 DIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRT 70
++++VD DEGN P GE+++ G + GY+ P +T E D W RT
Sbjct: 305 EVKIVD-DEGN------ELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTD----GWLRT 353
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG--DSRKDY 128
GDIG + +DG I+DRKKD++ + G V ++E L + P + V G D +
Sbjct: 354 GDIGYMDEDGYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGE 412
Query: 129 TV-ALVVPNP 137
V A VV
Sbjct: 413 AVKAFVVLKE 422
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-16
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSN---ISPGYYKNPTKTKE 57
G G P ++R+VD ++G P GE+++ + GYY P T +
Sbjct: 245 GSCGRPRPGVEVRIVD-EDGR------EVPPGEVGELVVRPRRPWAMFKGYYGMPEATAK 297
Query: 58 DFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN 117
+ + WF TGD G +DG + +DRKKD ++ + GE +S +VEA + P +
Sbjct: 298 AWRNG----WFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAE 352
Query: 118 ICVYG---DSRKDYTVALVVPNP 137
V + +D A+VV P
Sbjct: 353 AAVVAVPSELGEDEVKAVVVLRP 375
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-16
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 34/215 (15%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI I G ++ GY KT+E DE+G W +GD+G L DG + I R K+L+
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAI-DEDG--WLHSGDLGFLDDDGFLYITGRIKELIIT 447
Query: 95 QAGEYVSLGKVEAELKT-CPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLN---LD 150
GE V +E +K P+I N + GD RK ++ L LK + LD
Sbjct: 448 AGGENVPPVPIEEAVKKELPIISNAMLVGDKRKFLSMLLT------LKCEVDPETGEPLD 501
Query: 151 SLTFQ--QLCTHPEIEKQVLVEL------------QEHGKKSNLERFEIPNAVKLCSEV- 195
+LT + + C + E+ +E K+ N E I NA K+ V
Sbjct: 502 NLTEEAIEFCRLLGSHATTVSEILAGKDPLVYEAIEEGIKRVNKE--AISNAQKVQKWVI 559
Query: 196 ----WSPDMGLVTAAFKLKRKDIQERYQHEINRMY 226
+S G + KLKR + ++Y+ EI+++Y
Sbjct: 560 LEKDFSVPGGELGPTMKLKRPVVAKKYKDEIDKLY 594
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-16
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 30 KPFPR---GEILIGGSNISPGYYKNPTKTKE----DFFDEEGKRWFRTGDIGELHQDGVI 82
+P P GE+ IGG ++ GY P T E D FD+ G R +RTGD+ DG +
Sbjct: 277 QPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRL 336
Query: 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALV 133
+ R D VK++ G + LG++EA L+ P + + V LV
Sbjct: 337 EYLGRADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLV 386
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 23/144 (15%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKTK 56
S GR V + R+VD D+G+ P GEI++ G + GY+ P T
Sbjct: 340 SAGRPLP--GV-EARIVD-DDGD------ELPPDGGEVGEIIVRGPWLMQGYWNRPEATA 389
Query: 57 EDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIE 116
E W TGD+G + +DG + I DR KD++ GE + ++E L P +
Sbjct: 390 ETIDGG----WLHTGDVGYIDEDGYLYITDRIKDVII-SGGENIYPRELEDALYGHPAVA 444
Query: 117 NICVYG--DSR-KDYTVALVVPNP 137
+ V G D + + VA+VV P
Sbjct: 445 EVAVIGVPDEKWGERPVAVVVLKP 468
|
Length = 521 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-15
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 1 MSTGR----AGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPT 53
MS R G P ++R+VD ++ D+ P GE+L+ G + GY+ P
Sbjct: 382 MSDDRRPGYVGVPFPDTEVRIVDPED-----PDETMPDGEEGELLVRGPQVFKGYWNRPE 436
Query: 54 KTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP 113
+T + F D WFRTGD+ + +DG IRI+DR K+L+ + G V +VE L+ P
Sbjct: 437 ETAKSFLDG----WFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEVLREHP 491
Query: 114 VIENICVYGDSRKD---YTVALVVPNP 137
+E+ V G R+D VA VV P
Sbjct: 492 GVEDAAVVGLPREDGSEEVVAAVVLEP 518
|
Length = 573 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-15
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
G G P ++R+VD ++G P GEI++ G + GY+ P T E
Sbjct: 169 GSVGRPVPGVEVRIVD-EDGR------ELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR 221
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D W TGD+G L +DG + I+DRKKD++ + GE + +VE L P + ++ V
Sbjct: 222 DG----WLHTGDLGYLDEDGYLYIVDRKKDMI-ISGGENIYPAEVENVLLAHPAVADVAV 276
Query: 121 YG 122
G
Sbjct: 277 IG 278
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRG---EILIGGSNISPGYYKNPTKTKEDF 59
+G G P +++LV P G E+ + G N++PGY+++P T E
Sbjct: 346 SGVIGLPAPGTELKLV--------------PNGGKLEVRVKGPNVTPGYWRDPELTAEA- 390
Query: 60 FDEEGKRWFRTGDIGELHQD------GVI---RIIDRKKDLVKLQAGEYVSLGKVEAEL- 109
FDEEG ++R GD D G++ R+ + D KL +G +VS+G + L
Sbjct: 391 FDEEG--FYRIGDAVRF-VDPDDPERGLVFDGRVAE---DF-KLASGTWVSVGALRVALV 443
Query: 110 -KTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVL 168
P++++ V G R D LV PN + + +A + + HP + + +
Sbjct: 444 AALAPLVQDAVVAGHDR-DEIGLLVFPNLAACRRLAGLAEASAE---DVLAHPAVREALA 499
Query: 169 VELQEHGK-KSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
L H + + R L +E S D G +T + ++ + R + R+YA
Sbjct: 500 ARLAAHNRAATGSTRVT---RALLLAEPPSIDAGEITDKGYINQRAVLARRAALVERLYA 556
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-15
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 5 RAGAP-TTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKTKED 58
R G + ++ +VD + K PR GEI++ G+ + GYYKNP T+E
Sbjct: 344 RQGVRYVGLEEVDVVDPETM------KDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEA 397
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP 113
F G WF +GD+ +H DG I I DR KD++ + GE +S +VE L P
Sbjct: 398 F--AGG--WFHSGDLAVVHPDGYIEIKDRSKDII-ISGGENISSIEVEGVLYKHP 447
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-15
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFD---EEGKRWFRTGDIGELHQDGVIRIIDRKKDL 91
GE+ +GG ++ GY P T E F G+R +RTGD+ DG I + R
Sbjct: 324 GELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQ 383
Query: 92 VKLQAGEYVSLGKVEAELKTCP-VIENI-CVYGDSRKDYT-VALVVPNPS 138
VK++ G + LG++E L P V E V D+ D VA VV +
Sbjct: 384 VKIR-GFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGA 432
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 8e-15
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI+I G ++S GY NP KT E FF +G+ + TGD G L +DG++ R +KL
Sbjct: 345 GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL 403
Query: 95 QAGEYVSLGKVEAELKTCPVIENICV---YGDSRKDYTVALVVPNP 137
G + L ++E L+ +E+ V D + Y +A VVP
Sbjct: 404 -NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKE 448
|
Length = 503 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-15
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFD-----EEGKRWFRTGDIGELHQDGVIRIIDRKK 89
GE+ IGG ++ GY P T E F +G R +RTGD+ DG + + R
Sbjct: 320 GELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRID 379
Query: 90 DLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D VK++ G + LG++EA L P + V
Sbjct: 380 DQVKIR-GYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-14
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 36 EILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRK---KDLV 92
E+ + G N++PGY+K+P T FDEEG ++R GD R +D K L+
Sbjct: 425 EVRVKGPNVTPGYHKDPELT-AAAFDEEG--FYRLGDAA--------RFVDPDDPEKGLI 473
Query: 93 ---------KLQAGEYVSLGKVEAE-LKTC-PVIENICVYGDSRKDYTVALVVPNPSRLK 141
KL G +VS+G + + + C PVI + V G R + L PNP+ +
Sbjct: 474 FDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDR-AFIGLLAWPNPAACR 532
Query: 142 EIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEH-----GKKSNLERFEIPNAVKLCSEVW 196
++A + + HP + + L H G S + R L +E
Sbjct: 533 QLAGD---PDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARA------LLMTEPP 583
Query: 197 SPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
S D G +T + ++ + ER + R+YA
Sbjct: 584 SIDAGEITDKGYINQRAVLERRAALVERLYA 614
|
Length = 624 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-14
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPF-PRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G G P ++++D D+GN + P RGE+ I G + GY++ P T E D
Sbjct: 386 GTVGIPVPGTALKVID-DDGN----ELPLGERGELCIKGPQVMKGYWQQPEATAE-ALDA 439
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
EG WF+TGDI + DG +RI+DRKKDL+ + +G V ++E + P + N G
Sbjct: 440 EG--WFKTGDIAVIDPDGFVRIVDRKKDLI-IVSGFNVYPNEIEDVVMAHPKVANCAAIG 496
Query: 123 --DSRKDYTVAL-VVP 135
D R V L VV
Sbjct: 497 VPDERSGEAVKLFVVA 512
|
Length = 562 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-14
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
+STG G T IR+V D GE+ + G+ + GY +PT T +F
Sbjct: 352 VSTGLVGRSTGA-QIRIVGSDGLPL----PAGAVGEVWLRGTTVVRGYLGDPTITAANFT 406
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D W RTGD+G L G + I R K+L+ + GE +S +VE L + P + V
Sbjct: 407 DG----WLRTGDLGSLSAAGDLSIRGRIKELIN-RGGEKISPERVEGVLASHPNVMEAAV 461
Query: 121 YGDSRKDY--TV-ALVVPNPS 138
+G + Y V A++VP S
Sbjct: 462 FGVPDQLYGEAVAAVIVPRES 482
|
Length = 534 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 18/130 (13%)
Query: 15 IRLVDWDEGNYRVCDKPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTG 71
+R+ D + G P GE I + G N+ GY++ P KT E+F +G +F TG
Sbjct: 332 LRVTDPETG------AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEF-RADG--FFITG 382
Query: 72 DIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP-VIENICVYGDSRKDY-- 128
D+G++ + G + I+ R KDL+ + G V +VE E+ P V+E+ V G D+
Sbjct: 383 DLGKIDERGYVHIVGRGKDLI-ISGGYNVYPKEVEGEIDELPGVVES-AVIGVPHPDFGE 440
Query: 129 -TVALVVPNP 137
A+VVP P
Sbjct: 441 GVTAVVVPKP 450
|
Length = 504 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-14
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF------ 60
G P ++D + GE+ IGG ++ GY P T E F
Sbjct: 261 GRPLPNYTCWVLD--PDLEPLVPIGAV-GELCIGGPGVARGYLNRPELTAEKFIPDPFWL 317
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
+ G R +RTGD+ +DG + + RK D VK++ G+ + LG++EA L+ P + V
Sbjct: 318 NNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIR-GQRIELGEIEAVLRALPGVVVAAV 376
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-14
Identities = 61/238 (25%), Positives = 101/238 (42%), Gaps = 46/238 (19%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G P C+++LV + E+ + G N++PGY++ P T E FDEEG
Sbjct: 395 GLPAPGCEVKLVPVGG-----------KLEVRVKGPNVTPGYWRAPELTAE-AFDEEG-- 440
Query: 67 WFRTGDIGELHQ----------DGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL--KTCPV 114
++R+GD DG RI + D KL +G +VS+G + A P+
Sbjct: 441 YYRSGDAVRFVDPADPERGLMFDG--RIAE---DF-KLSSGTWVSVGPLRARAVSAGAPL 494
Query: 115 IENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIE---KQVLVEL 171
++++ + G R D LV PN + +A L SL ++ HP + ++ L L
Sbjct: 495 VQDVVITGHDR-DEIGLLVFPNLDACRRLAGLLADASLA--EVLAHPAVRAAFRERLARL 551
Query: 172 QEHGKKSN--LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227
S+ + R L E S D G +T + ++ + R + +YA
Sbjct: 552 NAQATGSSTRVAR------ALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYA 603
|
Length = 614 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
G+P C+IR+VD + + D+ G I I G N++ GYY NP TK +G
Sbjct: 317 GSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNVTSGYYNNPEATK-KSITPDG-- 369
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLV 92
W +TGD+G L +G + I R KD++
Sbjct: 370 WLKTGDLGFLR-NGRLVITGRAKDII 394
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 30 KPFPR-----GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84
+P P GEI+ G+ + GY KNP T+E F G WF TGD+ LH DG I+I
Sbjct: 379 QPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF--AGG--WFHTGDLAVLHPDGYIKI 434
Query: 85 IDRKKDLVKLQAGEYVSLGKVE 106
DR KD++ + GE +S +VE
Sbjct: 435 KDRSKDII-ISGGENISSIEVE 455
|
Length = 545 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-13
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Query: 9 PTTVCDIRLVDWDEGNYRVCDKPF-PRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRW 67
P+T+C +++D D+GN + P GE+ + G + GY++ P T E D +G W
Sbjct: 385 PSTLC--KVID-DDGN----ELPLGEVGELCVKGPQVMKGYWQRPEATDE-ILDSDG--W 434
Query: 68 FRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP 113
+TGDI + +DG +RI+DRKKD++ L +G V ++E L P
Sbjct: 435 LKTGDIALIQEDGYMRIVDRKKDMI-LVSGFNVYPNELEDVLAALP 479
|
Length = 562 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-13
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
+GEI+I G ++S GY NP KT E FF EG+ +RTGD G + DG + R +K
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIK 400
Query: 94 LQAGEYVSLGKVEAELKTCPVIEN---ICVYGDSRK-DYTVALVVPNP 137
L G + L +E L+ IE+ + Y K +Y +A +VP
Sbjct: 401 LH-GYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPET 447
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
G AG P + R+VD D+GN GEI+ + GY+ +P KT E F
Sbjct: 341 GSAGRPVLNVETRVVD-DDGN------DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFR 393
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
G WF +GD+G + ++G I ++DRKKD++K GE V+ +VE L T P + + V
Sbjct: 394 G--G--WFHSGDLGVMDEEGYITVVDRKKDMIK-TGGENVASREVEEALYTHPAVAEVAV 448
Query: 121 YG 122
G
Sbjct: 449 IG 450
|
Length = 523 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-12
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GE+ I G ++ GY P T E F R +RTGD+ DG + + RK VK+
Sbjct: 568 GELYIAGLGLALGYLNRPDLTAERFIA---LRLYRTGDLARPLADGALEYLGRKDSQVKI 624
Query: 95 QAGEYVSLGKVEAELKTCP 113
+ G + LG++EA L P
Sbjct: 625 R-GFRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEIL+ GS + GY P T + W+ TGD+G L ++G + I RKK+L+
Sbjct: 305 GEILVRGSLML-GYLGEPPATDD---------WWATGDLGHLDEEGYLYINGRKKNLIIT 354
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKE 142
G VS VE+EL+ P I V+GD++ + VAL+VP P+ +
Sbjct: 355 SFGRNVSPEWVESELQQAPAIAQAVVFGDAQP-FLVALIVPAPNISDD 401
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 15 IRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTG 71
++VD + G + P GE+ + G + GY NP T E D++G W TG
Sbjct: 341 AKIVDPETG------ESLPPNQPGELWVRGPQVMKGYLNNPEATAETI-DKDG--WLHTG 391
Query: 72 DIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---Y 128
D+G +DG + I+DR K+L+K + G V+ ++EA L + P I + V ++
Sbjct: 392 DLGYFDEDGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEI 450
Query: 129 TVALVVPNP-SRLKE 142
+A VV P S L E
Sbjct: 451 PMAFVVRQPGSELSE 465
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-12
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ +GG ++ GY + P T E F F G R +RTGD+ DGVI + R
Sbjct: 4894 GELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDH 4953
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIEN---ICVYGDSRKDYTVALVVPNPSRLKEIAE 145
VK++ G + LG++EA L+ P + I G K V VVP L + E
Sbjct: 4954 QVKIR-GFRIELGEIEARLREHPAVREAVVIAQEGAVGKQL-VGYVVPQDPALADADE 5009
|
Length = 5163 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-12
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ IGG+ ++ GY P T E F F G+R +RTGD+ DG + + R D
Sbjct: 292 GELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADD 351
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIEN--ICVYGDSRKD-YTVALVVPNPSRLKEIAE 145
VK+ G + LG++EA L P + + D + VA VVP + AE
Sbjct: 352 QVKI-RGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAE 408
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-12
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-GEILIGGSNISPGYYKNPTKTKEDFFDE 62
G G R+VD + N D P GEI+ + GY+ NP T E F
Sbjct: 345 GSVGKVIPTVAARVVD-ENMN----DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF--- 396
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G WF +GD+ ++G + ++DRKKD++ + GE + +VE L + P I + V G
Sbjct: 397 AGG-WFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIG 454
Query: 123 DSRKDYT---VALVVPNPS----RLKEIAEKLN 148
+ + + VA+ L+++AE L
Sbjct: 455 RADEKWGEVPVAVAAVRNDDAALTLEDLAEFLT 487
|
Length = 542 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
+G G P +I+LVD D+GN +P GE+ + G + GY++ P T E D
Sbjct: 377 SGSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDEVIKDG 432
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
W TGDI + ++G +RI+DRKKD++
Sbjct: 433 ----WLATGDIAVMDEEGFLRIVDRKKDMI 458
|
Length = 560 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-12
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI+I GS+I GY KNP T E F + G W TGD+G +H DG + I DR KD++ +
Sbjct: 393 GEIVIKGSSIMKGYLKNPKATSEAF--KHG--WLNTGDVGVIHPDGHVEIKDRSKDII-I 447
Query: 95 QAGEYVSLGKVEAELKTCP-VIENICV 120
GE +S +VE L P V+E V
Sbjct: 448 SGGENISSVEVENVLYKYPKVLETAVV 474
|
Length = 579 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 7e-12
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
GE+L+ G N+ GYY +P T D +G W TGD+G L ++G + I+DRKKD+
Sbjct: 364 GELLVRGPNVMKGYYDDPEATAAAI-DADG--WLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P CD L+D ++ + GE+LI G N+ Y+ P T+E D
Sbjct: 317 GSIGKPVLFCDYELIDENKNKV----EVGEVGELLIRGPNVMKEYWNRPDATEETIQDG- 371
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
W TGD+ + +DG + I+ RKK+++ + GE + +VE + + + V G
Sbjct: 372 ---WLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVGR 427
Query: 124 SRKDY---TVALVVPNPS 138
+ +A +V S
Sbjct: 428 QHVKWGEIPIAFIVKKSS 445
|
Length = 496 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 36/182 (19%)
Query: 13 CDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF--FDEEGKRWFRT 70
++ +VD ++GN R P GE++ G+N+ GY+ +P T E G+ T
Sbjct: 180 VELWVVD-EDGN-RC--APGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYT 235
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTV 130
GD+ + ++G + + RK D++K G VS ++E + P++ V G
Sbjct: 236 GDLVRMDEEGYLYFVGRKDDMIKT-RGYRVSPTEIEEVICAHPLVAEAAVIG-------- 286
Query: 131 ALVVPNPS---RLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPN 187
VP+P + + + +SL EK++L ++H L + +P
Sbjct: 287 ---VPDPLLGQAIVAVVVSADGESLD----------EKELLKHCRKH-----LPNYMVPA 328
Query: 188 AV 189
+
Sbjct: 329 EI 330
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
G I +GG ++ GY +NP D F E G WFRT D+G L DGV+ ++ R D +
Sbjct: 208 GRIALGGPTLAKGY-RNPVD--PDPFAEPG--WFRTDDLGALD-DGVLTVLGRADDAIS- 260
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYG--DSR-KDYTVALVVPNPSRLKEIAE 145
G V VEA L T P + + V+G D R VA VV + +
Sbjct: 261 TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEA 314
|
Length = 358 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKE 57
S GR A T ++D + + P P GE+ IGG+ ++ GY P T E
Sbjct: 268 PSIGRPLAGTQA---YVLD---AHLQ----PVPVGVPGELYIGGAGVARGYLGRPELTAE 317
Query: 58 DF-----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTC 112
F G+R +RTGD+ DG + + R D VK++ G + LG++EA L++
Sbjct: 318 RFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVR-GFRIELGEIEAALRSI 376
Query: 113 PVIENICVY---GDSRKDYTVALVVPNPSRLKEIAE 145
P + V + VA +V +P +I +
Sbjct: 377 PGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIED 412
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 15 IRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTG 71
IR+VD D+G P P GE+ L G GYY+ P F ++G ++RTG
Sbjct: 320 IRIVD-DQGE------PVPPGEVGELLTRGPYTIRGYYRAPEHNARAF-TDDG--FYRTG 369
Query: 72 DIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
D+ + DG R++ R KD + + GE +S ++E L + P + + V G
Sbjct: 370 DLVRIDADGYYRVVGRIKDQIN-RGGEKISPEEIENLLLSHPAVADAAVVG 419
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDFF---D 61
G P ++R+VD E R GEI + G +++ GY+ P T E F
Sbjct: 358 GRPLPGHEVRIVD-PETR-RPLP---DGEVGEIWVRGPSVAAGYWNRPEATAETFGARLA 412
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
+ W RTGD+G LH DG + + R KDL+
Sbjct: 413 TDEGGWLRTGDLGFLH-DGELYVTGRLKDLI 442
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 3e-11
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 30 KPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIID 86
K P GE + I G N++ GY+ P ++ E F + F TGDIG + DG ++D
Sbjct: 386 KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDR----FLTGDIGYMDTDGYFFLVD 441
Query: 87 RKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG---DSRKDYTVALVVPNPSRLKEI 143
RKKD++ + G V +E + P ++ + V G R + A V +L+
Sbjct: 442 RKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFV-----KLRPG 495
Query: 144 AEKLNLDSL 152
A+ +LD L
Sbjct: 496 AKPFSLDEL 504
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 30 KPFPR-----GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84
KP P GEI++ G+ + GY KNP +E F G WF +GD+G H DG I I
Sbjct: 393 KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF--ANG--WFHSGDLGVKHPDGYIEI 448
Query: 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVI 115
DR KD++ + GE +S +VE + T P +
Sbjct: 449 KDRSKDII-ISGGENISSLEVENVVYTHPAV 478
|
Length = 567 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 9 PTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWF 68
P T + +D R C P G + I G N+ PGY N ++ W
Sbjct: 182 PYTRVRVAKLDAGGALGRDCA-PGEVGVLAIRGPNVFPGY-LNDAHNAGARLED---GWL 236
Query: 69 RTGDIGELHQDGVIRIIDRKKDLV 92
TGD+G + DG + + R KDL+
Sbjct: 237 NTGDLGRIDADGYLWLTGRAKDLI 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 29/138 (21%)
Query: 1 MSTGRAGAPTTVCDIRL-VDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDF 59
+ G P +I++ VD EG+ GEI++ G+N+ GY
Sbjct: 268 HARPDVGRPLAGREIKIKVDNKEGH----------GEIMVKGANLMKGYLYQ--GELTPA 315
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENIC 119
F+++G WF TGDIGEL +G + ++ R+ DL+ + GE + ++E L P I+
Sbjct: 316 FEQQG--WFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQ--- 369
Query: 120 VYGDSRKDYTVALVVPNP 137
A+VVP P
Sbjct: 370 ----------EAVVVPKP 377
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-11
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P + RLVD + G G++ + G +++PGY+ P KT+ D
Sbjct: 260 GTTGRPVPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLRDG- 314
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
W RTGD DG R R D++K+ +G++VS +VEA L P + V
Sbjct: 315 ---WLRTGDRFSRDADGWYRYQGRADDMIKV-SGQWVSPLEVEAALGEHPAVAEAAVVAV 370
Query: 124 SRKD---YTVALVVPNP 137
+D A VVP P
Sbjct: 371 PDEDGLVRLKAFVVPRP 387
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 9e-11
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEE 63
G P ++R+VD D P P G+I + G + GY K P D +
Sbjct: 369 GCPLPGVEVRVVDAD-------GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDA---D 418
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV--Y 121
G WF TGD+ + DG IRI R KD++ ++ GE + + ++EA L P I + + Y
Sbjct: 419 G--WFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAIAQVAIVAY 475
Query: 122 GDSR-KDYTVALVVPNPSR 139
D R + A VVP P +
Sbjct: 476 PDERLGERACAFVVPRPGQ 494
|
Length = 547 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEE 63
G P IR+VD D P GE+ + G ++ GYY+NP E F E+
Sbjct: 377 GRPIPGVAIRIVDED-------GALLPEGEVGRLQVRGPTVTSGYYRNPEANAE-AFTED 428
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
G WFRTGD+G LH DG + I R+KD++
Sbjct: 429 G--WFRTGDLGFLH-DGRLTITGREKDMI 454
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-10
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 31 PFP---RGEILIGGSNISPGYYKNPTKTKEDFFDEE---GKRWFRTGDIGELHQDGVIRI 84
P P GE+ + G ++ GY+ P T E F G+R +RTGD+ DGVI
Sbjct: 845 PVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEY 904
Query: 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVP 135
R VKL+ G + LG++EA L P + V K V VV
Sbjct: 905 AGRIDHQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQL-VGYVVL 953
|
Length = 5163 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 22 EGNYRVCDKPFPR-------GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIG 74
E R D GEI I ++ GY NP T D+ +FRTGD+G
Sbjct: 358 EARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDG---YFRTGDLG 414
Query: 75 ELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYT--VAL 132
DG R D ++L G V+ ++E L+ P + V G +R T VA
Sbjct: 415 YTRGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAF 473
Query: 133 VVPNP 137
V+P
Sbjct: 474 VIPTD 478
|
Length = 540 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKTKED 58
G G P + RLVD ++G P P GE+ + G + GY P T
Sbjct: 293 GWVGLPLAGVETRLVD-EDGG------PVPHDGETVGELQVRGPTLFDGYLNRPDATAAA 345
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKK-DLVKLQAGEY-VSLGKVEAELKTCPVIE 116
F +G WFRTGD+ + DG+ RI+ R+ DL+K +G Y + G++E L P +
Sbjct: 346 F-TADG--WFRTGDVAVVDPDGMHRIVGRESTDLIK--SGGYRIGAGEIETALLGHPGVR 400
Query: 117 NICVYGDSRKDY---TVALVVPN 136
V G D VA VV
Sbjct: 401 EAAVVGVPDDDLGQRIVAYVVGA 423
|
Length = 471 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRG---EILIGGSNISPGYYKNPTKTKEDFFDE 62
G +I++VD K P G E G N+ GY P T DE
Sbjct: 357 DGYAAAGVEIKVVDEAR-------KTLPPGCEGEEASRGPNVFMGYLDEPELTAR-ALDE 408
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
EG W+ +GD+ + + G I+I RKKD++ ++ GE +S +VE L P I + CV
Sbjct: 409 EG--WYYSGDLCRMDEAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVA 465
Query: 123 --DSR-KDYTVALVVPNPS 138
D R + + A VV
Sbjct: 466 MPDERLGERSCAYVVLKAP 484
|
Length = 547 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 9 PTTVCDIRLVDWDEGNYRVCDKPFPR-GEILIGGSNISPGYYKNPTKTK----EDFFDEE 63
P+T IR D D+GN D P GEI I G + GY+ P +T D F
Sbjct: 387 PSTEVSIR--D-DDGN----DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGF--- 436
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
FRTGD+G + + G +I+DRKKD++ L +G V ++E + + P + + G
Sbjct: 437 ----FRTGDVGVMDERGYTKIVDRKKDMI-LVSGFNVYPNEIEEVVASHPGVLEVAAVGV 491
Query: 123 -DSRKDYTVALVV 134
D V L V
Sbjct: 492 PDEHSGEAVKLFV 504
|
Length = 557 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GE+ G ++ GY+ NP T E DE+G W TGD+ + + G +RI+ R KD++ +
Sbjct: 400 GELCTRGYSVMKGYWNNPEATAESI-DEDG--WMHTGDLATMDEQGYVRIVGRSKDMI-I 455
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPNP 137
+ GE + ++E L T P + ++ V+G + Y VA V +P
Sbjct: 456 RGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHP 501
|
Length = 558 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-10
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ IGG ++ GY++ P+ T E F F G R +RTGD+ DGVI + R
Sbjct: 3436 GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDH 3495
Query: 91 LVKLQAGEYVSLGKVEAELKTCP-VIENICVYGDSRK-DYTVALVVPN 136
VK++ G + LG++EA L P V E + + D VA VVP
Sbjct: 3496 QVKIR-GFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPA 3542
|
Length = 3956 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-10
Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 32/140 (22%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G T ++++ D DEG P GEI + G + GYY NP + F D
Sbjct: 340 GTCGFERTGMEVQIQD-DEGREL---PPGETGEICVIGPAVFAGYYNNPEANAKAFRDG- 394
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLG------KVEAELKTCPVIEN 117
WFRTGD+G L G + I R D+ Y+S G ++E +L T P +
Sbjct: 395 ---WFRTGDLGHLDARGFLYITGRASDM-------YISGGSNVYPREIEEKLLTHPAVSE 444
Query: 118 ICVYGDSRKDYTVALVVPNP 137
+ V G VP+P
Sbjct: 445 VAVLG-----------VPDP 453
|
Length = 528 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-10
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 35 GEILIGGSNISPGYYKNPTKTK---------------EDFFDEEGKRWFRTGDIGELHQD 79
GEI + G+ ++ YY +PT+ D F +G W RTGD+G + +D
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADG--WLRTGDVGSVTRD 443
Query: 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY-----TVALVV 134
G + I DR +D+++ GE++ ++E + P + V G + V ++
Sbjct: 444 GFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLA 502
Query: 135 PNPSRLKEIAEKL 147
P +E AE+L
Sbjct: 503 PGIEPTRETAERL 515
|
Length = 576 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-10
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 24/150 (16%)
Query: 5 RAGAPTTV---CDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKED 58
++G+ TV ++++VD + G PR GEI I G I GY +P T
Sbjct: 354 KSGSCGTVVRNAELKIVDPETG------ASLPRNQPGEICIRGPQIMKGYLNDPEATANT 407
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
D++G W TGDIG + D + I+DR K+L+K + G V+ ++EA L + P I +
Sbjct: 408 I-DKDG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLISHPSIADA 463
Query: 119 CVYGDSRKDYT-----VALVV-PNPSRLKE 142
V KD VA VV N S + E
Sbjct: 464 AVVP--MKDEVAGEVPVAFVVRSNGSEITE 491
|
Length = 537 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-09
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ IGG+ ++ GY++ P T E F F +G R +RTGD+ DGVI + R
Sbjct: 855 GELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDH 914
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICV--YGDSRKDYTVALVVP 135
VK++ G + LG++EA L P + V VA +VP
Sbjct: 915 QVKIR-GFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960
|
Length = 3956 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-09
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDI 73
+++ +D D G + P GE+ + + GYY N +T DE+G W TGDI
Sbjct: 371 EVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEETDRTI-DEDG--WLHTGDI 424
Query: 74 GELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY---GDSRKDYTV 130
G + DG I I+DR K+L+K + G V+ ++EA L T P +E+ V + +
Sbjct: 425 GYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPA 483
Query: 131 ALVVPNPS 138
A VV NP
Sbjct: 484 ACVVINPK 491
|
Length = 546 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 35 GEILIGG---SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDL 91
GEI I G I YY +P T + E W TGD G + ++G +DR+ ++
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVL---EADGWLHTGDTGYVDEEGFFYFVDRRCNM 423
Query: 92 VKLQAGEYVSLGKVEAELKTCPVIENICVYG--DSRKDYTV-ALVVPNP 137
+K + GE VS ++E + T P I++I V G DS +D + A VV N
Sbjct: 424 IK-RGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471
|
Length = 517 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-09
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQDGVIRIIDRKKDL 91
GE+ +GG ++ GY+ P T E F + G+R +RTGD+ DGVI I R
Sbjct: 3390 GELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQ 3449
Query: 92 VKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPS 138
VK++ G + LG++EA L P + V VA VVP
Sbjct: 3450 VKIR-GFRIELGEIEARLLEHPWVREAVVLAVD-GRQLVAYVVPEDE 3494
|
Length = 5163 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 31 PFPR---GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIR 83
P P GE+ +GG ++ GY P T E F F G R +RTGD+ DGVI
Sbjct: 1912 PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIE 1971
Query: 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY---GDSRKDYTVALVVPNPSRL 140
+ R VK++ G + LG++EA L+ + V G + K VA VVP L
Sbjct: 1972 YLGRIDHQVKIR-GFRIELGEIEARLREQGGVREAVVIAQDGANGKQL-VAYVVPTDPGL 2029
Query: 141 KEIAE 145
+ E
Sbjct: 2030 VDDDE 2034
|
Length = 3956 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G P + ++ D++ G + P GEI++ ++ GY+ P T E D
Sbjct: 390 GLPVPGTEFKICDFETG------ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDG- 442
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
W TGDIG++ + G + + R+K+++K+ G V +VEA L P + V G
Sbjct: 443 ---WLHTGDIGKIDEQGFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVVGR 498
Query: 123 -DSRK-DYTVALVVPNP 137
D K VA V P
Sbjct: 499 PDPDKGQVPVAFVQLKP 515
|
Length = 567 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 14 DIRLVDWDEGN-------YRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
+R VD DEGN V P+P ++ Y+ +P + KE +F R
Sbjct: 351 AVRRVD-DEGNPVPPGVGELVVRLPWPG---------MALTYWNDPERYKEAYFG----R 396
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP-VIENICV-YGDS 124
W+RTGD E +DG + R D++K+ +G+ + ++E+ L P V E V D
Sbjct: 397 WYRTGDWAERDEDGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDP 455
Query: 125 RKDYTV-ALVVPNPS-RLKEIAEKLN 148
K V A VV E+AE++
Sbjct: 456 GKGQIVLAFVVLAAGVEPNELAEEIR 481
|
Length = 528 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 APTTVCDIRLVDWDEGNYRVCD-KPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKR 66
P V ++++ D D G D K F G + + G ++ YY+ + D++G
Sbjct: 361 PPFGV-EMKITD-DAGKELPWDGKTF--GRLKVRGPAVAAAYYRVDGE----ILDDDG-- 410
Query: 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVS 101
+F TGD+ + G +RI DR KD++K GE++S
Sbjct: 411 FFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWIS 444
|
Length = 542 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GYYK+P KT + F + +G R+ GD + DG I ++ R + GE V +VE
Sbjct: 227 GYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVE 285
Query: 107 AELKTCPVIENICVYG--DSRKDYTVALVV 134
LK P + + V G D R V VV
Sbjct: 286 EALKAHPDVADALVVGVPDERWGQRVVAVV 315
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEE 63
G P +++++D + +GE L+ G + GY K P + D E
Sbjct: 367 GRPLPGVEVKVIDAN-------GAKLSQGETGRLLVRGCSNFGGYLKRP---HLNSTDAE 416
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV--Y 121
G WF TGD+ +G IRI R KD++ ++ GE + + ++E L P + + + Y
Sbjct: 417 G--WFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 122 GDSR-KDYTVALVVPNP 137
D R + A+VVP P
Sbjct: 474 PDERLGERACAVVVPKP 490
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 30/144 (20%)
Query: 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFFDE 62
G PT + L+D D + + GEI + G + GY+ P +T E F D
Sbjct: 341 CGRPTPGLRVALLDED-------GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDG 393
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLG------KVEAELKTCPVIE 116
W TGD+ +DG I+DRKKD++ V+ G +VE L P +
Sbjct: 394 ----WLHTGDVAREDEDGFYYIVDRKKDMI-------VTGGFNVFPREVEDVLAEHPAVA 442
Query: 117 NICVYG--DSRKDYTV-ALVVPNP 137
+ V G D + V A+VV P
Sbjct: 443 QVAVIGVPDEKWGEAVTAVVVLRP 466
|
Length = 524 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 16 RLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGE 75
++VDW G P GE+ I G + GY NP T+ D++G W RTGDI
Sbjct: 386 KVVDWSTGC---LLPPGNCGELWIQGPGVMKGYLNNPKATQSTI-DKDG--WLRTGDIAY 439
Query: 76 LHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVAL 132
+DG + I+DR K+++K + G ++ +EA L + P I + V K + VA
Sbjct: 440 FDEDGYLYIVDRLKEIIKYK-GFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAF 498
Query: 133 VVPNP 137
VV
Sbjct: 499 VVRRQ 503
|
Length = 560 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GE+ I G + GY+K P +T + D +G W TGDI + + G + I+DRKKD++ L
Sbjct: 409 GELCIKGPQVMKGYWKRPEETAK-VMDADG--WLHTGDIARMDEQGFVYIVDRKKDMI-L 464
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYG--DSRKDYTVALVV 134
+G V ++E + P + + G D + V +V+
Sbjct: 465 VSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI 506
|
Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-09
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ +GG ++ GY P T E F F G+R +RTGD+ DGV+ + R
Sbjct: 2346 GELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDH 2405
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICVY---GDSRKDYTVALVVP 135
VK++ G + LG++EA L+ P + V G S K VA VVP
Sbjct: 2406 QVKIR-GFRIELGEIEARLQAHPAVREAVVVAQDGASGKQL-VAYVVP 2451
|
Length = 5163 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-09
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 30/130 (23%)
Query: 14 DIRLVDWD----------EGNYRVCDKPFPRGEI--LIGGSNISP-----GYYKNPTKTK 56
I +V +D G P GE+ L+G I+ GY + K
Sbjct: 253 AIAVVKYDVETEEPIRDANGFCIKV----PPGEVGLLLG--EITDRNPFDGYTDDEATEK 306
Query: 57 EDFFD--EEGKRWFRTGDIGELHQDGVIRIIDRKKDL--VKLQAGEYVSLGKVEAELKTC 112
+ D ++G +F TGD+ G +DR D K GE VS +VE L
Sbjct: 307 KILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWK---GENVSTTEVEEVLAKH 363
Query: 113 PVIENICVYG 122
P +E VYG
Sbjct: 364 PGVEEANVYG 373
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-09
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ +GG+ ++ GY+ P T E F F +G R +RTGD+ L DG++ + R
Sbjct: 2533 GELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDH 2592
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICV 120
VK++ G + LG++E+ L P + V
Sbjct: 2593 QVKIR-GFRIELGEIESRLLEHPAVREAVV 2621
|
Length = 4334 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-09
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFF 60
G +G P +++LVD ++G GEI + G + + GY+ KT+E F
Sbjct: 330 GTSGKPVPGYEVKLVD-EDGE------EVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
E W RTGD +DG R D++K+ +G +VS +VE L P + V
Sbjct: 383 GE----WTRTGDKYYRDEDGYYWYCGRSDDMLKV-SGIWVSPFEVEDALLQHPAVLEAAV 437
Query: 121 YGDSRKD---YTVALVVPNP 137
G +D A VV
Sbjct: 438 VGAEDEDGLTKPKAFVVLKD 457
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
GEI G +I+ GY++NP + + F + +G+ W RTGD+G L +DG + + R KD++
Sbjct: 398 GEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGRLKDML 454
|
Length = 4334 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 26 RVC-DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84
++ D+ G IL G ++ GY+ ++T ++ W TGDIG + + G + +
Sbjct: 376 KIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDG---WLDTGDIGWIDKAGNLWL 432
Query: 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG--DSRKDYTVALVVPNPSRLKE 142
I R D +K GE V +VEA L P + ++ V G DSR V V RL++
Sbjct: 433 IGRSNDRIK-TGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV----RLRD 487
Query: 143 IAEKLNLDSLTFQQLCTHPEIEKQVLV---ELQEHGKKSNLERFEIP 186
+ + +K + + L+ H ++ NL RF+IP
Sbjct: 488 GWIWSDNE---------KENAKKNLTLSSETLRHHCREKNLSRFKIP 525
|
Length = 563 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 18/92 (19%)
Query: 10 TTV------CDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
TTV ++++VD + G PR GE+ G ++ GY+ +P KT E
Sbjct: 371 TTVGRALPHLEVKIVDPETGE------TVPRGEQGELCTRGYSVMKGYWNDPEKTAE-AI 423
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
D +G W TGD+ + ++G + I+ R KD++
Sbjct: 424 DADG--WMHTGDLAVMDEEGYVNIVGRIKDMI 453
|
Length = 559 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 26 RVCD---KPFPRG---EILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGE 75
RV D P G E+ IGG+ ++ GY P T E F E+G R +RTGD
Sbjct: 1455 RVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRAR 1514
Query: 76 LHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
+ DG + + R VKL+ G V +++A L P + V
Sbjct: 1515 WNADGALEYLGRLDQQVKLR-GFRVEPEEIQARLLAQPGVAQAAV 1558
|
Length = 4334 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI++ G +++ YY P TK + + W R GD+G G + RK V+
Sbjct: 299 GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVE- 357
Query: 95 QAGEYVSLGKVEAELKTCPVIENICVYG--DSRKDYTVALVVPNPSRLKEIAEKLNLDSL 152
AG + VE P + + G V +V P P L
Sbjct: 358 TAGGTLFTVPVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRA 417
Query: 153 TFQQLCTHPEIEK 165
T +Q EI+
Sbjct: 418 TAKQAPATVEIQA 430
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDE-GNY-RVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
G G +R+V D+ G Y R C G + I G N+ GY K + +
Sbjct: 386 GSVGLRLPYQRVRVVILDDAGRYLRDCA-VDEVGVLCIAGPNVFSGYL-EAAHNKGLWLE 443
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
+ W TGD+G + DG + R KDL+
Sbjct: 444 D---GWLNTGDLGRIDADGYFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-08
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G +G P +RLV D G +P GE+LI G + + Y+ N KT++ F E
Sbjct: 330 GTSGKPVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQGE- 384
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
W R+GD + DG R D++K+ +G YVS ++E+ L P + V G
Sbjct: 385 ---WTRSGDKYVRNDDGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGV 440
Query: 124 SRKDYTV---ALVVPNP 137
+D + A +V P
Sbjct: 441 EDEDGLIKPKAFIVLRP 457
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 33 PRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
G I G +I GYYK+P KT E F +G R+ GD + DG I ++ R +
Sbjct: 376 EIGWIARRG-HIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGR-GSVC 433
Query: 93 KLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPS 138
GE V +VE LK P + + ALVV P
Sbjct: 434 INTGGEKVFPEEVEEALKAHPDVAD-------------ALVVGVPD 466
|
Length = 533 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 35 GEILIGGSNISPGYYK--NPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
G + + G N+ GY + NP + +G W+ TGDI + ++G I I R K
Sbjct: 982 GRLFVRGPNVMLGYLRAENPGVLEPP---ADG--WYDTGDIVTIDEEGFITIKGRAKRFA 1036
Query: 93 KLQAGEYVSLGKVEAE 108
K+ AGE +SL VE
Sbjct: 1037 KI-AGEMISLAAVEEL 1051
|
Length = 1140 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 28/128 (21%)
Query: 15 IRLVDWDE----------GNYRVCDKPFPRGEI--LIGGSNISPGY----YKNPTKTKE- 57
+V +D G GE+ LIG I+ Y +P +++
Sbjct: 375 YAIVKYDVDTGEPVRDADGRCIKV----KPGEVGLLIGR--ITDRGPFDGYTDPEASEKK 428
Query: 58 ---DFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPV 114
D F ++G WF TGD+ G + +DR D + + GE V+ +VE L P
Sbjct: 429 ILRDVF-KKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWK-GENVATTEVENALSGFPG 486
Query: 115 IENICVYG 122
+E VYG
Sbjct: 487 VEEAVVYG 494
|
Length = 600 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GY+ NP T F W TGD+G DG + R D++K +G + ++E
Sbjct: 301 GYWNNPEATAAKFAG----DWLLTGDLGRRDADGYLWFKGRADDVIK-SSGYRIGPAEIE 355
Query: 107 AELKTCPVIENICVYG---DSRKDYTVALVVPNP 137
L P + V G R + A VV
Sbjct: 356 ECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAE 389
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 40/219 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-----GYYKNPTKTKED 58
G G P+ DI ++D D + C+ GEI+I S+ P GYY++P +T E
Sbjct: 353 GSMGKPSPGYDIDIIDPDG---KSCE-VGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEV 408
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ D ++ TGD + +DG + + R DL+K +G + +VE+ L P +
Sbjct: 409 WHDG----YYHTGDTAWMDEDGYLWFVGRADDLIK-SSGYRIGPFEVESALIQHPAVLEC 463
Query: 119 CVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKS 178
V G VP+P R + + + L E +++ ELQ+H KK
Sbjct: 464 AVTG-----------VPDPIRGQVVKATIVLTKGY--------EPSEELKKELQDHVKK- 503
Query: 179 NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217
++ P ++ E+ P T + K++R +I+E+
Sbjct: 504 VTAPYKYPRIIEFVDEL--PK----TISGKIRRVEIREK 536
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-07
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P + ++ + G P GEI++ G I GY+ P +T D
Sbjct: 376 GSIGVPWPDTEAMIMSLETGEAL---PPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDG- 431
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
W TGD+G + +DG + DRKKD++ + +G V +VE L Y
Sbjct: 432 ---WLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEVL-----------YEH 476
Query: 124 SRKDYTVALVVPNPSR 139
+ V + VP+P R
Sbjct: 477 EKVQEVVTIGVPDPYR 492
|
Length = 563 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 33 PRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
G I I +++ GYY D +G F T D+G L G + I+ R +
Sbjct: 300 QTGNITIQAQSLALGYYPQ-------ILDSQGI--FETDDLGYLDAQGYLHILGRNSQKI 350
Query: 93 KLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPN-----PSRLKE-I 143
+ GE V +VEA + +++++CV G + A+ VP LK I
Sbjct: 351 -ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAI 409
Query: 144 AEKL 147
++L
Sbjct: 410 KDQL 413
|
Length = 452 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFD--------------EEGKRWFRTGDIGELHQDG 80
GEI + G+NI GY+ P +T F + + W RTGD G DG
Sbjct: 419 GEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DG 477
Query: 81 VIRIIDRKKDLV 92
+ I R KDLV
Sbjct: 478 ELYITGRVKDLV 489
|
Length = 631 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ + G+ + GY +P +T F F G+R +RTGD+ DGV+ + R
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDH 4126
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR--KDYTVALVVP 135
VK++ G + LG++EA L + V + V +VP
Sbjct: 4127 QVKIR-GYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVP 4172
|
Length = 4334 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQDGVIRIIDRKKDL 91
G++ + G ++ GY P T F + G+R +RTGD+ DG + + R D
Sbjct: 803 GDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQ 862
Query: 92 VKLQAGEYVSLGKVEAELKTCPVIENI----CVY-------GDSRKDYTVALVVPNPSRL 140
+K++ G+ + LG+++ ++ P +E CV GD+R+ V +V
Sbjct: 863 LKIR-GQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQ--LVGYLVS----- 914
Query: 141 KEIAEKLNLDSL 152
+ L+ +L
Sbjct: 915 -QSGLPLDTSAL 925
|
Length = 1296 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 4 GRAGAPTTVCDIRLVD-----WDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKT 55
GR V I + D WD+ GEI++ G ++ YY P T
Sbjct: 355 GRPVDGVEVRIIAISDAPIPEWDD------ALRLATGEIGEIVVAGPMVTRSYYNRPEAT 408
Query: 56 KED-FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEY 99
+ D +G W R GD+G L G + RK V+ G
Sbjct: 409 RLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTL 453
|
Length = 552 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-07
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GY+ +P KT E RW+ TGD+ E +DG I R D++ AG + VE
Sbjct: 302 GYWDDPEKTAELIAG----RWYVTGDLVERDEDGYFWFIGRADDVII-SAGYRIGPFDVE 356
Query: 107 AELKTCPVIENICVYGDSRKDYTVALVVPNPSR 139
+ L P + V G VP+P R
Sbjct: 357 SALLEHPAVAEAAVVG-----------VPDPLR 378
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 20/92 (21%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDFF---- 60
G P ++R+VD ++G V PR G I + G +++PGY D F
Sbjct: 363 GPPLPGLEVRVVD-EDGQ--VLP---PRGVGVIELRGESVTPGY------LTMDGFIPAQ 410
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
D +G W TGD+G L ++G + + R KD++
Sbjct: 411 DADG--WLDTGDLGYLTEEGEVVVCGRVKDVI 440
|
Length = 545 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGE---ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRT 70
++R+VD D GN P GE +L G GYYK P FD EG ++ T
Sbjct: 362 EVRVVD-DHGN------PVAPGETGMLLTRGPYTFRGYYKAPEHNAA-AFDAEG--FYYT 411
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL 109
GD+ L +G I ++ R KD + + GE ++ ++E L
Sbjct: 412 GDLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLL 449
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 41/154 (26%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 46 PGYYKNPTKTKE----DFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVS 101
GY KN T+ D F +G W+RTGD+ DG +DR D + + E VS
Sbjct: 315 QGYLKNEDATESKLLRDVF-RKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWK-SENVS 372
Query: 102 LGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161
G+V L P + VYG V R A L S
Sbjct: 373 TGEVADVLGAIPSVAEANVYG--------VKVPGYDGRAGCAAITLEESSA--------V 416
Query: 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEV 195
E E L + + L + +P ++L EV
Sbjct: 417 ETEF-TKNLLAKL-ARKRLPSYAVPLFLRLTEEV 448
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GY+ P KT E + + WF TGD DG R +DR KD ++ + GE +S +VE
Sbjct: 385 GYFGMPEKTVEAWRN----LWFHTGDRVVRDADGWFRFVDRIKDAIRRR-GENISSFEVE 439
Query: 107 AELKTCPVIENICVY 121
L + P + V+
Sbjct: 440 QVLLSHPAVAAAAVF 454
|
Length = 542 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-06
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 14 DIRLVDWDEGNYRVCD-KPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGD 72
D+++V D+G D K F G++ + G + Y++ D WF TGD
Sbjct: 366 DMKIVG-DDGRELPWDGKAF--GDLQVRGPWVIDRYFRGDASPLVD-------GWFPTGD 415
Query: 73 IGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
+ + DG ++I DR KD++K GE++S +E
Sbjct: 416 VATIDADGFMQITDRSKDVIK-SGGEWISSIDIE 448
|
Length = 539 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFD---------------EEGKRWFRTGDIGELHQD 79
GEI + G NI GY+ P +T+ F + W RTGD+G ++ D
Sbjct: 430 GEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLG-VYLD 488
Query: 80 GVIRIIDRKKDLV 92
G + I R DL+
Sbjct: 489 GELYITGRIADLI 501
|
Length = 612 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 32/178 (17%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPG----YYKNPTKTKEDF 59
G G P + ++D DEGN + G+I + PG Y K+P KT+
Sbjct: 249 GSMGRPAPGYRVAIID-DEGNELPPGEE---GDIAVRVKPRPPGLFRGYLKDPEKTEATI 304
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENIC 119
+ W+ TGD +DG + R D++K +G + +VE+ L P +
Sbjct: 305 RGD----WYLTGDRAIKDEDGYFWFVGRADDVIK-SSGYRIGPFEVESALIEHPAVAEAA 359
Query: 120 VYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKK 177
V G P+P R + + F L + +++ ELQEH KK
Sbjct: 360 VVG-----------SPDPVRGEVVK--------AFVVLAPGYQPSEELAKELQEHVKK 398
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 47 GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVE 106
GY P T E D W+RT D+ + G +RI+ R D++ + GE + +VE
Sbjct: 361 GYLNQPQATAEKLQD----GWYRTSDVAVVDPSGTVRILGRVDDMI-ISGGENIHPSEVE 415
Query: 107 AELKTCPVIENICVYG--DSRKDYTV-ALVVPNP 137
L P + + V G D R +V A VVP
Sbjct: 416 RVLGRAPGVTEVVVIGLPDERWGQSVTACVVPRE 449
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 28/125 (22%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRT 70
++R+VD +GN P GE+ L G GYY+ P + FD +G ++R+
Sbjct: 369 EVRVVD-ADGN------PVAPGEVGELLTRGPYTIRGYYRAP-EHNARAFDADG--FYRS 418
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVI--------------E 116
GD+ DG + + R KD + + GE ++ +VE L P + E
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477
Query: 117 NICVY 121
C +
Sbjct: 478 KSCAF 482
|
Length = 542 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 17/70 (24%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKR------------WFRTGDIGELHQDGVI 82
GEI + G N++ GY++ P +T+ F G W RTGD+G + +G +
Sbjct: 398 GEIWVHGDNVAAGYWQKPEETERTF----GATLVDPSPGTPEGPWLRTGDLGFIS-EGEL 452
Query: 83 RIIDRKKDLV 92
I+ R KDL+
Sbjct: 453 FIVGRIKDLL 462
|
Length = 578 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 35 GEILIGGSNISPGYYK--NP----TKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRK 88
G + + G NI GY + P T E+ E + W+ TGDI + G ++I R
Sbjct: 554 GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRA 613
Query: 89 KDLVKLQAGEYVSLGKVE 106
K K+ AGE VSL VE
Sbjct: 614 KRFAKI-AGEMVSLEMVE 630
|
Length = 718 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 25/144 (17%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNIS--PG-----YYKNPTKTK 56
G G ++R VD ++G +P P+GEI G S G Y+ P K
Sbjct: 324 GTVGKAAPGAELRFVD-EDG------RPLPQGEI---GEIYSRIAGNPDFTYHNKPEKRA 373
Query: 57 EDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIE 116
E D G + +GD+G L DG + + DRK+D+V + G + ++EA L P +
Sbjct: 374 E--IDRGG--FITSGDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVH 428
Query: 117 NICVYGDSRKDY---TVALVVPNP 137
+ V+G ++ +A+V P P
Sbjct: 429 DCAVFGIPDAEFGEALMAVVEPQP 452
|
Length = 509 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 35 GEIL-IGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
GE++ G+ GYY NP T E + +GD+ DG I R D ++
Sbjct: 352 GELVNTAGAGFFEGYYNNPEATAERMRHG----MYWSGDLAYRDADGWIYFAGRTADWMR 407
Query: 94 LQAGEYVSLGKVEAELKTCPVIENICVYG--DSRK-DYTVALVVPNP 137
+ GE +S +E L P I + VY D R D +A +V
Sbjct: 408 VD-GENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRD 453
|
Length = 540 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-05
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF-----FDEEGKR-----WFRTGDIGELHQDGVIRI 84
GE++ G+ ++ GY+ +P KT E F F E W +GD ++G +
Sbjct: 357 GELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYF 414
Query: 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG---DSRKDYTVALVVPN 136
+ R+ +++K +G VS +VE ++ +G + V +V P
Sbjct: 415 VGRRDEMIK-TSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPP 468
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILI--GGSNISPGYYKNPTKTKEDFFD 61
G G P + +++ D P GE+ + G ++ GY N + F D
Sbjct: 260 GSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD 319
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
W+ TGD+ +DG + R D++K AG V +VE+ L P + V
Sbjct: 320 G----WYLTGDLAYRDEDGYFWFVGRADDVIK-TAGHLVGPFEVESALMEHPAVAEAGVI 374
Query: 122 GDS---RKDYTVALVVPNPSRLKEIAEKLNLDSLTF 154
G + A V P E +E+L + LTF
Sbjct: 375 GKPDPVAGEIVKAFVSLRPGF--EPSEELRRELLTF 408
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 26 RVCD---KPFPRGEI-LI----GGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELH 77
R+ D P GEI + G Y+ +P KT W GD+G L
Sbjct: 326 RILDEDGNELPPGEIGTVYFEMDGYPFE--YHNDPEKTAAA---RNPHGWVTVGDVGYLD 380
Query: 78 QDGVIRIIDRKKDLV 92
+DG + + DRK D++
Sbjct: 381 EDGYLYLTDRKSDMI 395
|
Length = 502 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 37 ILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQA 96
+ + G I+ GYY N T+ +FRTGDI ++G + I DR KDL+K
Sbjct: 363 VQLKGPWITGGYYGNEEATRSALTP---DGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-G 418
Query: 97 GEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKE 142
GE++S +E L P ++ V +
Sbjct: 419 GEWISSVDLENALMGHPKVKEAAVVA--IPHPKWQERPLAVVVPRG 462
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDI 73
+++LVD GEI + G++++ GY++ ++EG WF T D
Sbjct: 299 EVKLVD---------------GEIWLRGASLALGYWRQGQLV--PLVNDEG--WFATRDR 339
Query: 74 GELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
GE Q+G + I+ R +L GE + ++E + P+++ + V
Sbjct: 340 GEW-QNGELTILGRLDNLF-FSGGEGIQPEEIERVINQHPLVQQVFV 384
|
Length = 458 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 24/107 (22%)
Query: 14 DIRLVDWDEGNYRVCDKPFPRGEI---LIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRT 70
++ + D +GN P P+GE+ + G GYYK+P FD G ++ +
Sbjct: 364 EVWVAD-ADGN------PLPQGEVGRLMTRGPYTFRGYYKSPQHNAS-AFDANG--FYCS 413
Query: 71 GDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN 117
GD+ + DG I ++ R+KD + + GE K+ AE IEN
Sbjct: 414 GDLVSIDPDGYITVVGREKDQIN-RGGE-----KIAAE-----EIEN 449
|
Length = 536 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 44/222 (19%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-----GYYKNPTKTKED 58
G G + D++++D D GN P G+I I P Y NP KT
Sbjct: 343 GSMGKASPPYDVQIID-DNGNVL---PPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAAT 398
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
G + TGD G + +DG + R D++ +G + +VE+ L P +
Sbjct: 399 ---IRGDFYI-TGDRGIMDEDGYFWFVGRADDVI-NSSGYRIGPFEVESALIEHPAVVES 453
Query: 119 CVYGDS---RKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V R + A VV P L E+L ELQEH
Sbjct: 454 AVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTK--------------------ELQEHV 493
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217
K ++ P V+ E+ P T K+KR +++++
Sbjct: 494 KSVTAP-YKYPRKVEFVQEL--PK----TITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.003
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPF-PR--GEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G P C +R++D + ++P PR G I +GG Y K D
Sbjct: 348 GKPVAGCPVRILDRN-------NRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTS- 399
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD 123
TGD+G L G + I+ R+ D++ + GE V VE L P + + V G
Sbjct: 400 ------TGDMGYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGV 452
Query: 124 SRKDY---TVALVVPNP 137
+ + A VV +P
Sbjct: 453 PDERFGHRLAAFVVLHP 469
|
Length = 516 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 30/148 (20%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYY--KNPTKTKED 58
G G P + R+VD D+GN PRGE G + PT +
Sbjct: 310 AKPGATGKPVPGYEARIVD-DQGN------EVPRGE---------AGRLAVRGPTGCR-- 351
Query: 59 FFDEEGKR------WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTC 112
+ D+E ++ W TGDI +DG + R D++ + AG ++ +VE L T
Sbjct: 352 YLDDERQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTH 410
Query: 113 PVIENICVYG---DSRKDYTVALVVPNP 137
P + V G + R A +V
Sbjct: 411 PDVAECAVIGVPDEERGQIVCAHIVLRD 438
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| KOG1177|consensus | 596 | 100.0 | ||
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.98 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.98 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.98 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.98 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.98 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.98 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.98 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.98 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.97 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.97 | |
| KOG1175|consensus | 626 | 99.97 | ||
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.97 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.97 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.97 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.97 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.97 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.97 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.97 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.97 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.97 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.97 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.97 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.97 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.97 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.97 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.97 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.97 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.97 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.97 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.97 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.97 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.96 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.96 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.96 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.96 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.96 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.96 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.96 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.96 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.96 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.96 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.96 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.96 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.95 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.95 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.95 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.94 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.94 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.93 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.91 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.88 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.84 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.76 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.74 | |
| KOG1179|consensus | 649 | 99.7 | ||
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.68 | |
| KOG1178|consensus | 1032 | 99.57 | ||
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.44 | |
| KOG3628|consensus | 1363 | 99.28 | ||
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.09 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 98.77 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.72 | |
| KOG3628|consensus | 1363 | 97.91 | ||
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 96.76 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 95.3 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 94.64 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 87.5 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 87.47 |
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=326.24 Aligned_cols=226 Identities=50% Similarity=0.916 Sum_probs=208.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccc-ccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF-DEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~-~~~g~~~~~TGDl~~~~~~G 80 (228)
+++++|+|+|+++++|+|+++++.....+++..|||+++||++|.|||++|+.|.+.|. +++|.+||+|||+|++|++|
T Consensus 470 ~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG 549 (696)
T PLN02387 470 SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDG 549 (696)
T ss_pred CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCC
Confidence 46899999999999999966665554444556899999999999999999999999884 44566799999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+++|++.+.+.+++|+|+|+......|.+..++...++.+++++
T Consensus 550 ~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (696)
T PLN02387 550 CLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEK 629 (696)
T ss_pred cEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcC
Confidence 99999999999998789999999999999999999999999988778899999999999999999999888889999999
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhc
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~ 227 (228)
++..+++.+.+.+.+++.+|+.+++|+.|+++++.++.++|.+|+++|++|+.+++.|+++|++||+
T Consensus 630 ~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 630 EEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999999977678999999999999999999999999999999999999999999999995
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=325.58 Aligned_cols=219 Identities=34% Similarity=0.590 Sum_probs=201.8
Q ss_pred CCCCccCCCCCceEEEEeCCC--CCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDE--GNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~--~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~ 79 (228)
+++++|+|+||++++|+|.++ +++++ +|+.|||+++||++|.|||++|+.|++.|. +| ||+|||+|++|++
T Consensus 437 ~~gsvG~p~pg~evki~d~~~~~~~~~~---~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~--dG--w~~TGDlg~~d~d 509 (666)
T PLN02614 437 MLGTVGPPVPNVDIRLESVPEMEYDALA---STPRGEICIRGKTLFSGYYKREDLTKEVLI--DG--WLHTGDVGEWQPN 509 (666)
T ss_pred cCCcccCcCCceEEEEeeecccCcccCC---CCCCceEEEcCCcccccccCCHHHhhhhhc--cC--CcccceEEEEcCC
Confidence 468999999999999998433 24454 568999999999999999999999999883 78 9999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.+.+.+++|+|+|+......|....++. .+..++++
T Consensus 510 G~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~-~~~~~~~~ 588 (666)
T PLN02614 510 GSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVS-GDYNALCQ 588 (666)
T ss_pred CCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCC-cCHHHHhc
Confidence 99999999999999878999999999999999999999999998867889999999999999999988877 46788999
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
+++..+.+.+++.+..++.+|+.+++++.|+++++.++.++|++|+++|++|+.+++.|++.|++||++
T Consensus 589 ~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~~ 657 (666)
T PLN02614 589 NEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKT 657 (666)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999888765789999999999999999999999999999999999999999999999974
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=319.21 Aligned_cols=224 Identities=39% Similarity=0.712 Sum_probs=202.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||++++|+|.+++.....+.++..|||+++||++|.|||++|+.|...| +.+| ||+|||+|++|+||+
T Consensus 426 ~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~-~~dg--w~~TGDlg~~d~dG~ 502 (651)
T PLN02736 426 LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI-DEDG--WLHTGDIGLWLPGGR 502 (651)
T ss_pred CCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh-ccCC--CeeccceEEEcCCCc
Confidence 4689999999999999985444333333455689999999999999999999998887 4678 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCCh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|++......++|+|++++.....|.+..+....++.++++++
T Consensus 503 l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (651)
T PLN02736 503 LKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDP 582 (651)
T ss_pred EEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCH
Confidence 99999999999987899999999999999999999999999654567999999999888888888888777888999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
++...+.+.|.+.+++.+|+.+++|+.|++++++|+.++|++|++||++|++|++.|++.|++||.+
T Consensus 583 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~~ 649 (651)
T PLN02736 583 RVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAE 649 (651)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999876689999999999999999999999999999999999999999999999974
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=299.14 Aligned_cols=227 Identities=59% Similarity=1.020 Sum_probs=219.8
Q ss_pred CCCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 1 ~~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
|..|.+|.|+|.++++++|.+.+.+.+.+.| ..|||||+|+++..||+++|+.|++.|+..+|.|||+|||+|++.+||
T Consensus 451 ~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG 529 (678)
T KOG1180|consen 451 FSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDG 529 (678)
T ss_pred cccccccCCccceEEEEEEhhhcCccCCCCC-CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCC
Confidence 4678999999999999999999999988877 899999999999999999999999999877999999999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
.|.|++|.+|.+|+.+|++|+++.+|.+++.+|.|+..||++.+....++++|+|+......|.++.++..+++.++|++
T Consensus 530 ~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d 609 (678)
T KOG1180|consen 530 CLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCED 609 (678)
T ss_pred cEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhcc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
..+..++.++|.++.++++|..+++|..|++.++.+++++|.+|+..|+.|+.++..|+++|+++|++
T Consensus 610 ~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~ 677 (678)
T KOG1180|consen 610 KKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE 677 (678)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988999999999999999999999999999999999999999999999999974
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=309.04 Aligned_cols=220 Identities=37% Similarity=0.659 Sum_probs=197.1
Q ss_pred CCCCccCCCCCceEEEEeC-CCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDW-DEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~-~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
+++|+|+|+|+++++|++. +.+.... +++..|||+++||++|.|||++|+.|.+.| .+| ||+|||+|++|++|
T Consensus 434 ~~gsvG~p~p~~ev~i~d~~~~g~~~~--~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f--~dG--w~~TGDlg~~d~dG 507 (660)
T PLN02861 434 MVGTVGVPMTTIEARLESVPEMGYDAL--SDVPRGEICLRGNTLFSGYHKRQDLTEEVL--IDG--WFHTGDIGEWQPNG 507 (660)
T ss_pred CCCCccCccCceEEEEEEccccCcccC--CCCCceeEEEcCCcccccccCCHHHHHhhh--hcc--CcccCceEEECCCC
Confidence 4689999999999999983 3332111 134579999999999999999999999988 378 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+|+|+||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.+....++|+|++......+|....+.. .++.+++++
T Consensus 508 ~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~-~~~~~~~~~ 586 (660)
T PLN02861 508 AMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKT-GDFKSLCKN 586 (660)
T ss_pred cEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCC-CCHHHHhcC
Confidence 9999999999999878999999999999999999999999998866789999999988888888877653 357788899
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
+.....+.+++++.+++.+++.++.++.++++++.++.++|++|+++|++|+++.+.|+++|++||++
T Consensus 587 ~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~~ 654 (660)
T PLN02861 587 LKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSE 654 (660)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999886679999999999999999999999999999999999999999999999974
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=303.38 Aligned_cols=221 Identities=41% Similarity=0.690 Sum_probs=198.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
++|++|+|+|++++++.+.+.....+. +.+..|||+++||+++.|||++|+.|...| .+| ||+|||+|++|++|+
T Consensus 434 ~~gsvG~p~~~~evki~d~~~~g~~~~-~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~--~dG--w~~TGDig~~d~dG~ 508 (660)
T PLN02430 434 MLGTVGAPAVYNELRLEEVPEMGYDPL-GEPPRGEICVRGKCLFSGYYKNPELTEEVM--KDG--WFHTGDIGEILPNGV 508 (660)
T ss_pred CCCCccCCCCceEEEEEEcCCcCcccC-CCCCcceEEecCCCccccccCChHHhhhhh--hcc--ceeccceEEECCCCc
Confidence 368999999999999987332222222 134679999999999999999999999888 488 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCCh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
|+|.||.+|+|++++|++|+|.+||.++.+||.|.+|+|+|......++|+|+++.....+|.+..++. .+..++++++
T Consensus 509 l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~ 587 (660)
T PLN02430 509 LKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFT-GSFEELCSLP 587 (660)
T ss_pred EEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCC-CCHHHHhcCH
Confidence 999999999999878999999999999999999999999997656789999999999999999888775 4578889999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
++.+.+.+++.+.+++.+|+.+++++.|+++++.++.++|++|+++|++|+.+.+.|++.|++||++
T Consensus 588 ~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~ 654 (660)
T PLN02430 588 ELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRK 654 (660)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999865789999999999999999999999999999999999999999999999974
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=294.86 Aligned_cols=220 Identities=40% Similarity=0.686 Sum_probs=208.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..|++|.|+|+++++++|++..++.+. +..|||||+|+++|+||+++|+.|++.+ ++|| |++|||+|+++++|.
T Consensus 469 ~lgsvG~p~p~~~vKL~dvpe~ny~a~---~~~GEIcirG~~Vf~GYyK~p~~T~e~i-deDG--WLhTGDiG~~~p~G~ 542 (691)
T KOG1256|consen 469 VLGSVGPPVPGNEVKLVDVPEMNYDAD---GSKGEICVRGPNVFMGYYKDPEKTAEAI-DEDG--WLHTGDIGEWDPNGT 542 (691)
T ss_pred CCCCcCCcccCceEEEechHHhCcCcC---CCcceEEEecchhceeccCChHHHhhhh-cccc--ccccccceeECCCcc
Confidence 478999999999999999877777764 4589999999999999999999999999 6899 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCCh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
|.|.||.+++||++.|++|.|..||+++.+.+.|...+|.+.+.+.+++|+|+|+++...+|....++. .++.++|+++
T Consensus 543 l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~-~~~eelc~n~ 621 (691)
T KOG1256|consen 543 LKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVK-GTFEELCRNL 621 (691)
T ss_pred EEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCc-hhHHHHhcCh
Confidence 999999999999999999999999999999999999999999888999999999999999999866777 8899999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
..++.+.+++.+..++.++..++....|++.++.++..+|++|||.|++|..|.++|+++|++||+.
T Consensus 622 ~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~ 688 (691)
T KOG1256|consen 622 DVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKE 688 (691)
T ss_pred hhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999888999999999999999999999999999999999999999999999999974
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=304.23 Aligned_cols=221 Identities=34% Similarity=0.603 Sum_probs=198.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||++++|+|. ++... ...++..|||+|+||+++.|||++|+.|++.|. ++| ||+|||+|++|+||+
T Consensus 477 ~~~svG~p~~g~evkI~d~-~~~~~-~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~-~dG--w~~TGDig~~d~dG~ 551 (700)
T PTZ00216 477 EPNAVGQLLKGVEMKLLDT-EEYKH-TDTPEPRGEILLRGPFLFKGYYKQEELTREVLD-EDG--WFHTGDVGSIAANGT 551 (700)
T ss_pred CCCCcCCcCCCeEEEEeec-hhhcc-CCCCCCCceEEEcCCcccchhcCChhHhhhhcc-ccC--CeeccceEEEcCCCc
Confidence 4689999999999999994 33211 112456899999999999999999999999884 678 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcce--EEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN--ICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~--a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|+|+||.+|+|++++|++|+|.+||.++.+||.|.+ ++|++.+++.+++|+|+++.....+|....++. .++.++++
T Consensus 552 l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~ 630 (700)
T PTZ00216 552 LRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIE-GEYPAILK 630 (700)
T ss_pred EEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCC-CCHHHHhc
Confidence 999999999999668999999999999999999996 466666777889999999999899999888876 56888999
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
++++.+.+.+.+.+..++.++..++.|+.|+++++.++.++|++|+++|++|+++.+.|++.|++||++
T Consensus 631 ~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~ 699 (700)
T PTZ00216 631 DPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD 699 (700)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence 999999999999999876789999999999999999999999999999999999999999999999974
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=294.47 Aligned_cols=180 Identities=31% Similarity=0.501 Sum_probs=165.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++|+|+++++++.++.+ ++|..++ ++++||||++|+++|.||++||++|++.|. ++| ||+|||+|+.|+||+
T Consensus 351 k~~svG~~~~g~~~~v~~-e~g~~l~---~~~~GEI~vrg~~imkGY~~NpeaT~~~~~-~~G--W~~TGDiGy~D~DG~ 423 (537)
T KOG1176|consen 351 KPGSVGRLLPGVRVKVLD-ETGVSLG---PNQTGEICVRGPQVMKGYLKNPEATKEAFD-DDG--WFHTGDLGYFDEDGY 423 (537)
T ss_pred cccccCccccceEEEeeC-CCCCCCC---CCCceEEEEECcccchhhcCChHHHHhhcc-cCC--ccccCceEEEcCCCe
Confidence 589999999999999998 9999998 568999999999999999999999999995 348 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCe---EEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~---~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|.+|.+|+||. +|+.|+|.+||+.|.+||.|.||+|++.+|+.+ ++|+|+++++....
T Consensus 424 l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lt---------------- 486 (537)
T KOG1176|consen 424 LYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLT---------------- 486 (537)
T ss_pred EEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCC----------------
Confidence 9999999999996 899999999999999999999999999998754 99999998743211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|.++++ ++++++++|+.+++++++| +|++|||+|+.|+++|.+.
T Consensus 487 ---------e~di~~~v~-k~l~~y~~~~~V~Fvd~lP------Ks~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 487 ---------EKDIIEYVR-KKLPAYKLPGGVVFVDELP------KTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred ---------HHHHHHHHH-hhCChhhccCeEEEeccCC------CCCcchHHHHHHHHHHHhc
Confidence 689999999 9999999999999999999 9999999999999999764
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=296.99 Aligned_cols=220 Identities=28% Similarity=0.503 Sum_probs=191.2
Q ss_pred CCCCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
+++++|+|+ |+++++|+|+++..... .+..|||+++||++|.|||++|+.|++.| .++| ||+|||+|++|++|
T Consensus 511 ~~gsvG~p~~pg~e~ki~d~~~~~~~~---~~~~GEl~vrGp~v~~GY~~~pe~T~~~f-~~dG--W~~TGDig~~d~dG 584 (746)
T PTZ00342 511 NTESIGGPISPNTKYKVRTWETYKATD---TLPKGELLIKSDSIFSGYFLEKEQTKNAF-TEDG--YFKTGDIVQINKNG 584 (746)
T ss_pred CcccccCcCCCcEEEEEecccccccCC---CCCceEEEEecCcccccccCChhhhhhhc-CcCC--cccCCcEEEECCCC
Confidence 578999998 99999999855433322 23479999999999999999999999998 3688 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcC------CCchhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLN------LDSLTF 154 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~------~~~~~~ 154 (228)
+|+|+||.+|+|++++|++|+|.+||+.+.+||.|.+|+|+|.+...+++|+|+|+.....+|++..+ +...++
T Consensus 585 ~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~ 664 (746)
T PTZ00342 585 SLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNY 664 (746)
T ss_pred eEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCcccH
Confidence 99999999999998889999999999999999999999999986567899999999999999988753 333344
Q ss_pred Hh-----hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH---HHHHhHh
Q psy8218 155 QQ-----LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ---HEINRMY 226 (228)
Q Consensus 155 ~~-----~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~---~~i~~~y 226 (228)
.+ +++++++.+.+.+.+.+..++.+|+.+++++.|+++++.++. ++++|+|.|++|+.+.+.|+ +.|++||
T Consensus 665 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTpt~KlkR~~v~~~y~~~i~~i~~~y 743 (746)
T PTZ00342 665 LEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLTPTFKVKRFYVFKDYAFFIDQVKKIY 743 (746)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccChhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 44 446667788889999998765789999999999999999988 56799999999999999999 7888888
Q ss_pred cC
Q psy8218 227 AS 228 (228)
Q Consensus 227 ~~ 228 (228)
++
T Consensus 744 ~~ 745 (746)
T PTZ00342 744 KN 745 (746)
T ss_pred cC
Confidence 64
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=277.31 Aligned_cols=208 Identities=39% Similarity=0.700 Sum_probs=194.7
Q ss_pred CCCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 1 ~~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
+++||+|.|+|+++++|.| .|||+++||++|.|||++|++|++.| ++|| ||+|||+|.+|++|
T Consensus 401 ~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf-~~DG--Wf~TGDlg~~d~~g 463 (613)
T COG1022 401 FVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAF-TEDG--WFRTGDLGELDEDG 463 (613)
T ss_pred cccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhc-cccC--CcccCceeEEcCCC
Confidence 4689999999999999998 59999999999999999999999999 4699 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCc-hhhHhhcC
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDS-LTFQQLCT 159 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (228)
+|+|+||.++.|++++|++|.|+.||..+..+|.|.+++|++ +++.++.|+|+|..+...+|..+.+... .+..++++
T Consensus 464 ~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~ 542 (613)
T COG1022 464 YLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELAR 542 (613)
T ss_pred cEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhh
Confidence 999999999999999999999999999999999999999999 6689999999999999999999888444 57889999
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
++.+...+.+++..... .+..++.+..+++.+..++..++++|++.|++|..+.+.|.+.|+.+|++
T Consensus 543 ~~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~ 609 (613)
T COG1022 543 DPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609 (613)
T ss_pred CHHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhc
Confidence 99999999999999986 34888999999999998888999999999999999999999999999974
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=270.39 Aligned_cols=209 Identities=25% Similarity=0.406 Sum_probs=176.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEE----e
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL----H 77 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~----~ 77 (228)
+++++|+|+||+++++++ ++..|||+++||+++.|||++|+.|...| ..+| ||+|||+|++ |
T Consensus 390 ~~~svG~p~pg~~v~i~d-----------~~~~GEi~vrg~~v~~GY~~~p~~t~~~~-~~dg--w~~TGDlg~~~~~~d 455 (614)
T PRK08180 390 RAGNIGLPAPGCEVKLVP-----------VGGKLEVRVKGPNVTPGYWRAPELTAEAF-DEEG--YYRSGDAVRFVDPAD 455 (614)
T ss_pred CCCcccCccCCcEEEEec-----------CCCCcEEEEecCccchhhcCChhHhHhhc-ccCC--ceeccceEEecCCcC
Confidence 468999999999999998 23469999999999999999999998887 3578 9999999999 4
Q ss_pred eCCeEEEeccCCCeEEccCceEec--hHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVS--LGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
++|+|+|+||.+|.|++++|++|+ +.++|..+.+||.|.+|+|++.++ ..+.|+|+++++....+.... ...+..
T Consensus 456 ~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~~~~--~~~~~~ 532 (614)
T PRK08180 456 PERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLAGLL--ADASLA 532 (614)
T ss_pred CCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHHhhc--ccCCHH
Confidence 689999999999999988899877 677888889999999999999884 678899999887654444332 112233
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
+.+..+++.+.+.+.|..+.. ...+.+++|+++++++++|+..+|.+|++||++|+++.+.|+++|++||++
T Consensus 533 ~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 533 EVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred HHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 445667778888888888876 555666799999999999999999999999999999999999999999974
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=267.85 Aligned_cols=207 Identities=26% Similarity=0.410 Sum_probs=178.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEE-e---
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL-H--- 77 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~-~--- 77 (228)
+++++|+|+||+++++++ .|+.|||+++||+++.|||++|+.|.+.| +++| ||+|||+|++ |
T Consensus 402 ~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f-~~dg--w~~TGDlg~~~d~~~ 467 (624)
T PRK12582 402 RVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPGYHKDPELTAAAF-DEEG--FYRLGDAARFVDPDD 467 (624)
T ss_pred CCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCcccccccCCccchhhhc-CccC--CccccceEEecCCcC
Confidence 468999999999999975 45789999999999999999999998888 3578 9999999998 4
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHH--HHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVE--AELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
++|+|+|+||.+|.|++++|++|+|.+|| .++.+||.|.+|+|+|.+ +..+.++|+|+......+....+. ...
T Consensus 468 ~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~~---~~~ 543 (624)
T PRK12582 468 PEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPDA---APE 543 (624)
T ss_pred CCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCCC---CHH
Confidence 46999999999999998899999999885 678899999999999986 577899999987765554433222 133
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCc-ceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFE-IPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
+.+.++++.+.+.+.|.++.+ .++.+. +|+.+++++++|+..+|.+|++||++|+++.++|+++|++||++
T Consensus 544 ~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~ 615 (624)
T PRK12582 544 DVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE 615 (624)
T ss_pred HHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC
Confidence 455677888888888888874 577787 99999999999999999999999999999999999999999974
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=266.60 Aligned_cols=181 Identities=33% Similarity=0.542 Sum_probs=159.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+||++++|+|++++.++| |++|||+++||+++.|||++|+.|...|. .+| ||+|||+|++|++|+
T Consensus 344 ~~~~~G~~~pg~~v~Ivd~~~~~~~p----g~vGei~irgp~v~~GY~~~pe~t~~~f~-~~g--W~~TGDlg~~d~~G~ 416 (534)
T COG0318 344 KPGSVGRPLPGVEVRIVDPDGGEVLP----GEVGEIWVRGPNVMKGYWNRPEATAEAFD-EDG--WLRTGDLGYVDEDGY 416 (534)
T ss_pred cCCcccccCCCcEEEEEeCCCCccCC----CCceEEEEECchhhhhhcCChHHHHHhhc-cCC--eeeecceEEEcCCcc
Confidence 46788999999999999966654444 67999999999999999999999999773 358 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|+. +|++|+|.+||.++.+||.|.+|+|++.++. +.++|+|+++..... .
T Consensus 417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~--------~-------- 479 (534)
T COG0318 417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDA--------E-------- 479 (534)
T ss_pred EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCC--------C--------
Confidence 9999999999995 8999999999999999999999999999976 349999999865210 0
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...++|.++++ ..++.+.+|+.|++++++| +|++||++|+.|++++.+
T Consensus 480 -------~~~~~i~~~~~-~~l~~~~~P~~v~~v~~lP------~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 480 -------LTAEELRAFLR-KRLALYKVPRIVVFVDELP------RTASGKIDRRALREEYRA 527 (534)
T ss_pred -------CCHHHHHHHHH-hhhhcccCCeEEEEeCCCC------CCCchhhhHHHHHHHHHh
Confidence 01578888998 7899999999999999999 999999999999999987
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.14 Aligned_cols=179 Identities=27% Similarity=0.469 Sum_probs=159.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC--ccCccccCCCccccccccccCCCeeeeeccEEEEeeC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp--~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~ 79 (228)
+++|.|.|+||+++.++| ++|++++ +++ |+|.++.| +++++||++|+.+.+.+. .. ||.|||.+++|+|
T Consensus 339 ~~g~~g~p~pG~~~~vvd-d~g~~~~---~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~--~~--~y~tGD~~~~Ded 409 (528)
T COG0365 339 KNGSSGLPLPGYAVRRVD-DEGNPVP---PGV-GELVVRLPWPGMALTYWNDPERYKEAYF--GR--WYRTGDWAERDED 409 (528)
T ss_pred CCCCCCCCCCCceeEEEC-CCCCcCC---CCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh--hc--eeecCceeEEccC
Confidence 567779999999999999 5588887 457 99999986 999999999999998885 33 9999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+++|+||.||+|++ .|++|.+.+||++|.+||.|.||+|++.+|.. .+.|||++++....
T Consensus 410 Gy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~--------------- 473 (528)
T COG0365 410 GYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEP--------------- 473 (528)
T ss_pred CCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCCh---------------
Confidence 999999999999997 69999999999999999999999999998753 39999999987421
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
. ++.++|+++++ +.+.++..|+.|++++++| +|.||||.|+.|++.+.+
T Consensus 474 -------~-~L~~ei~~~vr-~~~~~~~~p~~i~fv~~LP------kT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 474 -------N-ELAEEIRRHVA-RNIGPHAIPRKIRFVDELP------KTASGKIQRRLLRKILHK 522 (528)
T ss_pred -------H-HHHHHHHHHHH-hccCcccCCceEEEecCCC------CCCcccHHHHHHHHHHhh
Confidence 1 45789999998 5666699999999999999 999999999999998873
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=260.70 Aligned_cols=185 Identities=19% Similarity=0.326 Sum_probs=159.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC---ccCccccCCCccccccccccCCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS---NISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp---~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~ 79 (228)
.+++|+|+||++++|+| ++|++++ +|+.|||++++| +++.|||++++.+...|...+| ||+|||+|++|++
T Consensus 432 ~~s~G~p~~g~~~~i~d-~~g~~~~---~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g--~~~TGDlg~~d~d 505 (647)
T PTZ00237 432 YNATGVPSIFIKPSILS-EDGKELN---VNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPG--YYNSGDLGFKDEN 505 (647)
T ss_pred CCCCccCcCCceEEEEC-CCCCCCC---CCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCC--EEECCcEEEECCC
Confidence 48999999999999999 6888886 568999999986 8999999999998876643478 9999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+|+|+||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++.....
T Consensus 506 G~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~-------------- 570 (647)
T PTZ00237 506 GYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQ-------------- 570 (647)
T ss_pred CeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcccc--------------
Confidence 999999999999996 7999999999999999999999999998864 4589999987531100
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
....+.+.++|+++++ ..++++++|+.|++++++| +|++||++|+.|++++.
T Consensus 571 ----~~~~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 571 ----SIDLNKLKNEINNIIT-QDIESLAVLRKIIIVNQLP------KTKTGKIPRQIISKFLN 622 (647)
T ss_pred ----CCCHHHHHHHHHHHHH-hhcCccccCcEEEEcCCCC------CCCCccEeHHHHHHHHc
Confidence 0001234678889998 8899999999999999999 99999999999999985
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=260.53 Aligned_cols=183 Identities=17% Similarity=0.220 Sum_probs=159.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| ++|++++ .+++|||++++ |+++.|||++++.+...+.. .+| ||+|||++++|+
T Consensus 452 ~~gs~G~p~~g~~v~i~d-~~g~~~~---~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g--~~~TGD~~~~d~ 525 (666)
T PLN02654 452 KPGSATFPFFGVQPVIVD-EKGKEIE---GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAG--YYFSGDGCSRDK 525 (666)
T ss_pred CCCccCCCCCCceEEEEC-CCCCCCC---CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCC--EEEeCceEEECC
Confidence 578999999999999999 7888775 45789999998 78999999999988776543 267 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+++|+||.||+|++ +|++|+|.+||.+|.+||.|.+++|++.++.. .++|+|++++...
T Consensus 526 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~--------------- 589 (666)
T PLN02654 526 DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVP--------------- 589 (666)
T ss_pred CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCC---------------
Confidence 9999999999999996 79999999999999999999999999987653 5899999876421
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...++.++|+++++ ..++++++|+.|++++++| +|.+||++|+.|++.+..
T Consensus 590 -------~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 590 -------YSEELRKSLILTVR-NQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASR 640 (666)
T ss_pred -------CCHHHHHHHHHHHH-HhCCCCcCCCEEEECCCCC------CCCCcCchHHHHHHHHcC
Confidence 01223568889998 8899999999999999999 999999999999998864
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=240.02 Aligned_cols=182 Identities=26% Similarity=0.406 Sum_probs=163.5
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
-|+|..+++.+.+|+| ..|..++. |+.||||++|++.|.|||++++.|.+... .| +||+|||.+.+|++|.++
T Consensus 406 ksVG~~m~h~Ea~iv~-~~g~~v~~---~~~Gel~iRGY~tMl~Ywg~~~kT~eti~-~d--rW~~TGDi~~m~enG~i~ 478 (596)
T KOG1177|consen 406 KSVGHLMDHYEAAIVD-KDGSEVPL---GTKGELLIRGYSTMLGYWGEEEKTKETIG-ND--RWYDTGDIAVMDENGTIE 478 (596)
T ss_pred hhhhhccccccccccc-CCCCcccc---CCCceEEEEechhheeecCCcccchhhcc-cc--cceecCceEEEcCCCcEE
Confidence 4899999999999999 78887774 57899999999999999999999988772 34 499999999999999999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCe---EEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY---TVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~---~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++||.+|+|+ ++|++|+|.+||+.|.+||.|.+|.|+|++|.+. ++|+|.+.+.....
T Consensus 479 iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~------------------ 539 (596)
T KOG1177|consen 479 IVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK------------------ 539 (596)
T ss_pred EEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc------------------
Confidence 9999999999 6999999999999999999999999999998754 99999998765321
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
...+.|.++|+ .+++.+.+|+++++++++| +|.+|||+|-+++++++.++.
T Consensus 540 -----~t~E~lKa~Ck-~klaHFKiPky~vf~~~FP------lT~tGKIqKFeir~~~k~~l~ 590 (596)
T KOG1177|consen 540 -----TTAETLKAMCK-GKLAHFKIPKYFVFVDEFP------LTTTGKIQKFEIREMSKGHLG 590 (596)
T ss_pred -----ccHHHHHHHHh-cccccccCCcEEEEeccCc------ccccccchhHHHHHHHHhhcc
Confidence 12688999999 8899999999999999999 999999999999999996653
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=253.22 Aligned_cols=180 Identities=26% Similarity=0.424 Sum_probs=158.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|+.||||++||+++.|||++++.+...| ..+| ||+|||+|+++++|+
T Consensus 372 ~~~~vG~~~~~~~v~i~d~~~g~~~~---~g~~Gei~v~g~~~~~GY~~~~~~t~~~~-~~~g--~~~TGDlg~~~~~G~ 445 (560)
T PLN02574 372 KYSSVGLLAPNMQAKVVDWSTGCLLP---PGNCGELWIQGPGVMKGYLNNPKATQSTI-DKDG--WLRTGDIAYFDEDGY 445 (560)
T ss_pred CCCceeeeCCCcEEEEEeCCCCcCCC---CCCCeEEEEECcchhhhhcCChhHhhhhc-cCCC--CcccceEEEEECCCe
Confidence 35789999999999999988888876 56899999999999999999999998877 3578 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|++ +|++|++.+||+.|.+|+.|.+++|++.++.. .++++|++......+
T Consensus 446 l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---------------- 508 (560)
T PLN02574 446 LYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLS---------------- 508 (560)
T ss_pred EEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999977643 488888876532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|.++++ ..+++++.|+.+++++++| +|++||++|+.|++++.+
T Consensus 509 ---------~~~l~~~~~-~~l~~~~~p~~v~~v~~iP------~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 509 ---------QEAVINYVA-KQVAPYKKVRKVVFVQSIP------KSPAGKILRRELKRSLTN 554 (560)
T ss_pred ---------HHHHHHHHH-HhccCcccCcEEEEeeccC------CCCcchhhHHHHHHHHhh
Confidence 356778888 7899999999999999999 999999999999998865
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=249.35 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=146.7
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+||++++|+|++++.+++ +|+.|||+++|++++.|||++++.+.....+.+| ||+|||+|++|++|+|
T Consensus 352 ~~~vG~p~~g~~v~i~d~~~~~~~~---~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~--w~~TGD~g~~d~~G~l 426 (539)
T PRK06334 352 ESCVGMPIRGMDVLIVSEETKVPVS---SGETGLVLTRGTSLFSGYLGEDFGQGFVELGGET--WYVTGDLGYVDRHGEL 426 (539)
T ss_pred CCcCceecCCCEEEEEcCCCCccCC---CCceEEEEEecCcccccccCCcccccceeeCCce--eEECCCEEEECCCCeE
Confidence 4689999999999999966677776 5689999999999999999999865432222345 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcce------EEEEecCCCC-eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIEN------ICVYGDSRKD-YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~------a~v~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|.||.+|+|++ +|++|+|.+||++|.+||+|.+ ++|++.++.. .++++++....
T Consensus 427 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------- 488 (539)
T PRK06334 427 FLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTS----------------- 488 (539)
T ss_pred EEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCC-----------------
Confidence 999999999996 7999999999999999999987 7788877644 34555543211
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++++++++..++.+++|+.+++++++| +|++|||+|++|+++...
T Consensus 489 ------------~~~~~~~l~~~~~~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 489 ------------ISEVNDILKNSKTSSILKISYHHQVESIP------MLGTGKPDYCSLNALAKS 535 (539)
T ss_pred ------------hHHHHHHHHhcCCcccccchheeeecccc------cccCCcccHHHHHHHHHH
Confidence 34567777633478899999999999999 999999999999988654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=243.58 Aligned_cols=190 Identities=19% Similarity=0.215 Sum_probs=149.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCcc--CccccCCCcccccccccc------CCCeeeeeccE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNI--SPGYYKNPTKTKEDFFDE------EGKRWFRTGDI 73 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~--~~gY~~~~~~~~~~~~~~------~g~~~~~TGDl 73 (228)
+++++|+|++|++++|+| +++++++.+ .+++|||+++||.+ +.|||+++ .+. .+.+. .+.+||+|||+
T Consensus 289 ~~~~~G~p~~~~~~~ivd-~~g~~~~~g-~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~~g~~~~~~~~~~~~~TGDl 364 (499)
T PLN03051 289 APGAFSTASLGTRFVLLN-DNGVPYPDD-QPCVGEVALAPPMLGASDRLLNAD-HDK-VYYKGMPMYGSKGMPLRRHGDI 364 (499)
T ss_pred CCccccCCCCCceEEEEC-CCCCCCCCC-CCcceEEEEecCcCCCCccccCCc-ccc-eeeecCCccccCCcceeecCCe
Confidence 357899999999999999 788888743 12589999999976 58999765 333 33221 23458999999
Q ss_pred EEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhc-CCCcceEEEEecCCCC----eEEEEE---EeCchhHHHHHH
Q psy8218 74 GELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKT-CPVIENICVYGDSRKD----YTVALV---VPNPSRLKEIAE 145 (228)
Q Consensus 74 ~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~~~v~~a~v~~~~~~~----~~~a~v---~~~~~~~~~~~~ 145 (228)
|++|+||+|+|+||.||+|+. +|++|+|.+||++|.+ ||.|.+|+|++.++.. .++|+| +++.....
T Consensus 365 g~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~---- 439 (499)
T PLN03051 365 MKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQ---- 439 (499)
T ss_pred EEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccc----
Confidence 999999999999999999995 7999999999999996 9999999999987642 478888 65543100
Q ss_pred HcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
...+++.+.++++++ ..++++..|..|++++++| +|++||++|++|++++.+.+.
T Consensus 440 ----------------~~~~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 440 ----------------ARPEALQKKFQEAIQ-TNLNPLFKVSRVKIVPELP------RNASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred ----------------cchHHHHHHHHHHHH-hhcCCccCCceEEEcCCCC------CCCCccHHHHHHHHHHHHhhc
Confidence 001233556666666 6688877777899999999 999999999999998877654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=251.54 Aligned_cols=185 Identities=21% Similarity=0.324 Sum_probs=160.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| ++++.++ ++|+.|||+++| |+++.|||++++.+...+.. .+| ||+|||++++|+
T Consensus 413 ~~~~~G~p~~g~~~~i~d-~~g~~~~--~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~ 487 (625)
T TIGR02188 413 KPGSATLPFFGIEPAVVD-EEGNPVE--GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG--YYFTGDGARRDK 487 (625)
T ss_pred CCCcccCCcCCceEEEEC-CCCCCCC--CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC--EEECCceEEEcC
Confidence 568999999999999999 7888775 146899999999 68999999999888776643 467 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+++|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....
T Consensus 488 dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~-------------- 552 (625)
T TIGR02188 488 DGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEP-------------- 552 (625)
T ss_pred CCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCC--------------
Confidence 9999999999999996 7999999999999999999999999997764 358999998765311
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
...+.++|+++++ ..++++++|+.|++++++| +|.+||++|+.|++++...
T Consensus 553 --------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 553 --------DDELRKELRKHVR-KEIGPIAKPDKIRFVPGLP------KTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred --------CHHHHHHHHHHHH-hhcCCCccCcEEEECCCCC------CCCCccchHHHHHHHHcCC
Confidence 0123578889998 8899999999999999999 9999999999999987643
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=251.79 Aligned_cols=183 Identities=19% Similarity=0.287 Sum_probs=158.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+++| |+++.|||++++.+...+.. .+| ||+|||++++|+
T Consensus 422 ~~~~vG~p~~g~~~~i~d-~~g~~~~---~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~ 495 (637)
T PRK00174 422 KPGSATRPLPGIQPAVVD-EEGNPLE---GGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKG--MYFTGDGARRDE 495 (637)
T ss_pred CCCcccCCCCCceEEEEC-CCCCCCC---CCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCC--EEECCceEEEcC
Confidence 367999999999999999 7888876 56899999999 68999999999988776542 467 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+++|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....
T Consensus 496 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~-------------- 560 (637)
T PRK00174 496 DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEP-------------- 560 (637)
T ss_pred CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCC--------------
Confidence 9999999999999997 6999999999999999999999999997654 358999998764210
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.++|+++++ ..++.+++|..|++++++| +|++||++|++|++.+..
T Consensus 561 --------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 561 --------SDELRKELRNWVR-KEIGPIAKPDVIQFAPGLP------KTRSGKIMRRILRKIAEG 610 (637)
T ss_pred --------CHHHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCCcchHHHHHHHHHcC
Confidence 1123567888888 8899999999999999999 999999999999988754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=250.65 Aligned_cols=190 Identities=17% Similarity=0.237 Sum_probs=158.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC---ccCccccCCCccccccccccCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS---NISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp---~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~ 78 (228)
+++++|.|+||++++|+|++++++++ +|+.|||+++|| +++.+||++++.+...+....+.+||+|||+|++|+
T Consensus 408 ~~gs~G~p~~g~~v~i~d~~~g~~~~---~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~ 484 (628)
T TIGR02316 408 KLGSPGLPMYGYHLRVLDEATGRPCG---PNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDE 484 (628)
T ss_pred CCCCcccCcCCceEEEEECCCCCCCC---CCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcC
Confidence 45899999999999999955788886 568999999998 578999999988776653322233999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+|++ +|++|+|.+||.+|.+||.|.+|+|++.++.. .++++|++.+....
T Consensus 485 dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~-------------- 549 (628)
T TIGR02316 485 DGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSA-------------- 549 (628)
T ss_pred CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCccc--------------
Confidence 9999999999999996 79999999999999999999999999987653 48888888654210
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.+......+.++|+++++ ..|+++++|+.|++++++| +|++||++|+.|++.++
T Consensus 550 ---~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~lP------~t~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 550 ---GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAALP------KTRSGKLLRRSIQALAE 603 (628)
T ss_pred ---ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCCC------CCCchHHHHHHHHHHHc
Confidence 000001223678899998 8899999999999999999 99999999999998875
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=246.23 Aligned_cols=192 Identities=24% Similarity=0.367 Sum_probs=155.1
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
.++|+|+|+++++|+++ + +|+.|||+++||+++.|||++|+.+...+ ..+| ||+|||+|++|++|+++
T Consensus 364 ~~vG~p~~~~~v~i~~~-~--------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~~g--~~~TGDl~~~d~dG~l~ 431 (563)
T PLN02860 364 VCVGKPAPHVELKIGLD-E--------SSRVGRILTRGPHVMLGYWGQNSETASVL-SNDG--WLDTGDIGWIDKAGNLW 431 (563)
T ss_pred cccCCccCCcEEEEecC-C--------CCceeEEEEecCcccccccCCccccchhc-cCCC--eEEccceEEEcCCCCEE
Confidence 37899999999999983 3 35789999999999999999999998877 3577 99999999999999999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
|+||.+|+|++ +|++|+|.+||+++.+||.|.+++|++.++. ..++|+|++++..... ..........
T Consensus 432 ~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--------~~~~~~~~~~ 502 (563)
T PLN02860 432 LIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWS--------DNEKENAKKN 502 (563)
T ss_pred EeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccc--------cccchhhccc
Confidence 99999999996 8999999999999999999999999998765 3589999987642100 0000000000
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEe-ccCCCCCCCccCccccccHHHHHHHHHHHHHhH
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLC-SEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v-~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~ 225 (228)
. ....+.|..++++..+++|++|+.++++ +++| +|++||++|++|++++.++++.+
T Consensus 503 ~---~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP------~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 503 L---TLSSETLRHHCREKNLSRFKIPKLFVQWRKPFP------LTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred c---cccHHHHHHHHhhCcccccccceEEEEEecCCC------CCcccchhHHHHHHHHHHHHhcc
Confidence 0 0114578888873369999999999875 6799 99999999999999998887764
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=249.91 Aligned_cols=180 Identities=18% Similarity=0.238 Sum_probs=154.0
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC--ccCccccCCCcccc--ccccc-cCCCeeeeeccEEEEe
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTK--EDFFD-EEGKRWFRTGDIGELH 77 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp--~~~~gY~~~~~~~~--~~~~~-~~g~~~~~TGDl~~~~ 77 (228)
+|++|.|.||++++|+| ++|++++ |++|||+++|| +++.|||++++.+. ..+.. -+| ||+|||+|++|
T Consensus 438 ~g~~g~p~~g~~v~ivd-~~g~~~~----g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g--~~~tGDlg~~d 510 (652)
T TIGR01217 438 IGEIQAPGLGTAVQSWD-PEGKPVT----GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPG--VWRHGDWITLT 510 (652)
T ss_pred CCccCCCcCCCceEEEC-CCCCCCC----CCccEEEEecCCCccccceeCCCccchhHHhhhcCCCC--EEEcCCcEEEC
Confidence 57899999999999999 7787763 68999999996 69999999998654 22222 257 99999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
+||+|+|+||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.++. ..++|||++.+....
T Consensus 511 ~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~------------- 576 (652)
T TIGR01217 511 PRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATL------------- 576 (652)
T ss_pred CCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCC-------------
Confidence 99999999999999995 8999999999999999999999999998765 359999998764210
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
...+.++|+++++ ..++++++|+.|++++++| +|++||++|+.|++.+.
T Consensus 577 ---------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 577 ---------DDALLDRIKRTIR-AGLSPRHVPDEIIEVPGIP------HTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred ---------CHHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccChHHHHHHHHc
Confidence 1123568888988 8899999999999999999 99999999999999874
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=245.90 Aligned_cols=181 Identities=28% Similarity=0.478 Sum_probs=157.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+| +++++++ .|+.|||+++||+++.||+++++.+...|. .+| ||+|||+|+++++|.
T Consensus 376 ~~~~vG~~~~~~~v~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-~~g--~~~TGDlg~~~~~G~ 448 (562)
T PRK05677 376 QVGTIGIPVPSTLCKVID-DDGNELP---LGEVGELCVKGPQVMKGYWQRPEATDEILD-SDG--WLKTGDIALIQEDGY 448 (562)
T ss_pred CCCccCccCCCCEEEEEC-CCCCCCC---CCCCeEEEEecCccchhhcCCchhhhhccC-CCC--cccccceEEECCCCc
Confidence 457899999999999999 6788777 568999999999999999999999988873 567 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|++ +|++|+|.+||..|.+++.|.+++|++.++.. .++++|++......+
T Consensus 449 l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---------------- 511 (562)
T PRK05677 449 MRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLT---------------- 511 (562)
T ss_pred EEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCC----------------
Confidence 9999999999997 69999999999999999999999999987643 477788765431100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.+.+.++++ ..++++++|..+++++++| +|++||++|++|++++.++.
T Consensus 512 ---------~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~sGKi~r~~L~~~~~~~~ 559 (562)
T PRK05677 512 ---------KEQVMEHMR-ANLTGYKVPKAVEFRDELP------TTNVGKILRRELRDEELKKA 559 (562)
T ss_pred ---------HHHHHHHHH-HhhhhccCCcEEEEeccCC------CCCcccccHHHHHHHHHHhc
Confidence 356778887 7899999999999999999 99999999999998886653
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=228.38 Aligned_cols=178 Identities=25% Similarity=0.483 Sum_probs=163.3
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+-|+|+ |.=+++|+| ++|++++ +|++|+|..+||..++|||+.|+-.+..| +.+| +|+|||+++++++|++
T Consensus 358 ~TQGrPlsP~DEvrvvD-~dg~pv~---pGE~G~LltRGPYTirGYyrap~HNa~aF-~a~G--FYrsGD~V~~~~dGyl 430 (542)
T COG1021 358 HTQGRPLSPDDEVRVVD-ADGNPVA---PGEVGELLTRGPYTIRGYYRAPEHNARAF-DADG--FYRSGDLVRRDPDGYL 430 (542)
T ss_pred ecCCCcCCCcceeEEec-CCCCCCC---CCCcceeeecCCeeeeeeccCchhhhhcc-CcCC--ceecCceeEecCCceE
Confidence 4679999 788999999 8999997 67899999999999999999999998888 6899 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
.+.||.+|+|+ ++|++|..++||+.|..||.|.+|++++.+|. +..||||++++....
T Consensus 431 ~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~------------------ 491 (542)
T COG1021 431 VVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLR------------------ 491 (542)
T ss_pred EEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCC------------------
Confidence 99999999999 89999999999999999999999999998876 459999999876432
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
..+|+.++.+.+++.|.+|..|.+++.+| +|+-|||++++|++++...
T Consensus 492 --------~~qlr~~L~~~GlAa~K~PDrie~v~~~P------~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 492 --------AAQLRRFLRERGLAAFKLPDRIEFVDSLP------LTAVGKIDKKALRRRLASR 539 (542)
T ss_pred --------HHHHHHHHHHcchhhhcCCcceeecccCC------CcccccccHHHHHHHhhhh
Confidence 57889999989999999999999999999 9999999999999987653
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=247.14 Aligned_cols=182 Identities=15% Similarity=0.238 Sum_probs=154.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC--ccCccccCCCcccc--ccccc-cCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTK--EDFFD-EEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp--~~~~gY~~~~~~~~--~~~~~-~~g~~~~~TGDl~~~ 76 (228)
++|++|.|+||++++|+| ++++++ +|++|||+++|| +++.|||++++.+. ..+.. -+| ||+|||++++
T Consensus 436 ~~g~~g~p~~g~~~~ivd-~~g~~~----~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g--~~~TGDl~~~ 508 (655)
T PRK03584 436 YRGEIQCRGLGMAVEAWD-EDGRPV----VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPG--VWRHGDWIEI 508 (655)
T ss_pred CCCccCCCcCCceeEEEC-CCCCCC----CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCC--EeecCCeEEE
Confidence 468899999999999999 677766 357999999995 79999999998653 22222 256 8999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+|+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++++|++.+....
T Consensus 509 d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~------------ 575 (655)
T PRK03584 509 TEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTL------------ 575 (655)
T ss_pred CCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCC------------
Confidence 999999999999999996 7999999999999999999999999998763 358999998764210
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.++|+++++ ..++++++|..|++++++| +|++|||+|+.|++++.+
T Consensus 576 ----------~~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 576 ----------DDALRARIRTTIR-TNLSPRHVPDKIIAVPDIP------RTLSGKKVELPVKKLLHG 625 (655)
T ss_pred ----------cHHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccchHHHHHHHHcC
Confidence 1123567888988 8899999999999999999 999999999999998753
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=238.58 Aligned_cols=180 Identities=33% Similarity=0.569 Sum_probs=156.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|+|+++++|+| ++++.++ .|+.|||+++||+++.||+++++.+...+ ..+| ||+|||+|+++++|.
T Consensus 304 ~~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gY~~~~~~~~~~~-~~~g--~~~TGDl~~~~~~g~ 376 (488)
T PRK09088 304 KAGAAGIPTPTVQTRVVD-DQGNDCP---AGVPGELLLRGPNLSPGYWRRPQATARAF-TGDG--WFRTGDIARRDADGF 376 (488)
T ss_pred cCCccccCCCCcEEEEEC-CCCCCCc---CCCceEEEEECCccchhhcCChhhhhhhh-cCCC--CeeecceEEEcCCCc
Confidence 467899999999999999 6777776 46889999999999999999999888776 3567 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|+. +|.+|+|.+||++|.+++.|.+++|++.++. ....++|++......+
T Consensus 377 l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---------------- 439 (488)
T PRK09088 377 FWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLD---------------- 439 (488)
T ss_pred EEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCC----------------
Confidence 9999999999996 7999999999999999999999999997754 3477888876542100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+++.++++ ..++++++|..+++++++| +|++||++|++|++++.+.
T Consensus 440 ---------~~~l~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 440 ---------LERIRSHLS-TRLAKYKVPKHLRLVDALP------RTASGKLQKARLRDALAAG 486 (488)
T ss_pred ---------HHHHHHHHH-hhCcCCCCCCEEEEcccCC------CCCCCceeHHHHHHHHHhc
Confidence 467888888 7899999999999999999 9999999999999988753
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=240.45 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=155.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCC-cccc--CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGN-YRVC--DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~-~~~~--~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|++|++++|+++ ++. +.+. .+.|+.|||+++||+++.|||++++.+.+.|. +| ||+|||+|++|+
T Consensus 340 ~~~~~G~~~~g~~v~i~d~-~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~--~g--~~~TGDlg~~d~ 414 (540)
T PRK05857 340 EAGAVGRPYPGVDVYLAAT-DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI--DG--WVNTGDLLERRE 414 (540)
T ss_pred ccCCcCcccCCcEEEEECc-cccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC--CC--ceeccceEEEcC
Confidence 4689999999999999994 443 3332 13468899999999999999999999988884 78 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+++|.||.+|+|++ +|++|+|.+||..|..||.|.+|+|++.++.. .+++++++.....
T Consensus 415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~--------------- 478 (540)
T PRK05857 415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELD--------------- 478 (540)
T ss_pred CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCC---------------
Confidence 9999999999999996 79999999999999999999999999987643 3666666653210
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
+....++.+.+.+.++ ..++++++|..+++++++| +|++||++|++|++.++..
T Consensus 479 -----~~~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~~iP------~t~~GKi~r~~l~~~~~~~ 532 (540)
T PRK05857 479 -----ESAARALKHTIAARFR-RESEPMARPSTIVIVTDIP------RTQSGKVMRASLAAAATAD 532 (540)
T ss_pred -----hhhHHHHHHHHHHHHH-hhhccccCCeEEEEhhcCC------CCCCcceeHHHHHHhhhhc
Confidence 0112234567777777 7899999999999999999 9999999999999988753
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=240.83 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=152.0
Q ss_pred CCccCCCCCceEEEEeCC--------CCCccccCCCCCCceEEEecCccCccccCCCcccccccc-ccCCCeeeeeccEE
Q psy8218 4 GRAGAPTTVCDIRLVDWD--------EGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF-DEEGKRWFRTGDIG 74 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~--------~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~-~~~g~~~~~TGDl~ 74 (228)
.++|+|+|+++++|+|+. ++++++ +|++|||+++||+++.|||++++.|...+. +.+|.+||+|||+|
T Consensus 352 ~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~---~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg 428 (552)
T PRK09274 352 ICVGRPVDGVEVRIIAISDAPIPEWDDALRLA---TGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428 (552)
T ss_pred cccCccCCCceEEEEeccccccccccccccCC---CCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEE
Confidence 378999999999999953 344454 578999999999999999999999887664 23444699999999
Q ss_pred EEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC--eEEEEEEeCchhHHHHHHHcCCCch
Q psy8218 75 ELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD--YTVALVVPNPSRLKEIAEKLNLDSL 152 (228)
Q Consensus 75 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~ 152 (228)
++|++|+|+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++++|++.+....
T Consensus 429 ~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~----------- 496 (552)
T PRK09274 429 YLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVAC----------- 496 (552)
T ss_pred EEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCcccc-----------
Confidence 99999999999999999996 79999999999999999999999999877543 47888887654211
Q ss_pred hhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccC--ccccccHHHHHHHHHHHH
Q psy8218 153 TFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVT--AAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t--~~gKv~R~~l~~~~~~~i 222 (228)
...++.+.+++.+. .++.++.|..+++++++| +| ++|||+|++|++++.+.+
T Consensus 497 ----------~~~~l~~~l~~~l~--~~~~~~~~~~~~~~~~lP------~t~~~~GKi~r~~L~~~~~~~~ 550 (552)
T PRK09274 497 ----------SKSALYQELRALAA--AHPHTAGIERFLIHPSFP------VDIRHNAKIFREKLAVWAAKQL 550 (552)
T ss_pred ----------chHHHhhhhHHHHH--hcCCCcceeEEeccCCCC------ccccccccccHHHHHHHHHHhh
Confidence 01123456666664 346678889999999999 77 789999999999987754
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=241.16 Aligned_cols=179 Identities=27% Similarity=0.403 Sum_probs=157.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+++++++|++++++++++ +|+.|||+++|++++.||+++++.+...+ ..+| ||+|||+++++++|+
T Consensus 354 ~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~Gel~v~g~~~~~GY~~~~~~~~~~~-~~~~--~~~TGD~~~~~~~g~ 427 (537)
T PLN02246 354 KSGSCGTVVRNAELKIVDPETGASLP---RNQPGEICIRGPQIMKGYLNDPEATANTI-DKDG--WLHTGDIGYIDDDDE 427 (537)
T ss_pred cCCccccccCCcEEEEecCCCCCcCC---CCCceEEEEECCchhccccCCchhhhhcc-cCCC--CeeecceEEEeCCCe
Confidence 45789999999999999977888887 56889999999999999999999988876 3567 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|+. +|++|+|.+||+.+.++|+|.+++|++.++.. .+++++++......
T Consensus 428 l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------- 489 (537)
T PLN02246 428 LFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI----------------- 489 (537)
T ss_pred EEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCC-----------------
Confidence 9999999999996 79999999999999999999999999876553 47888887654210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
..++|+++++ ..+++++.|..+++++++| +|++||++|.+|++++.
T Consensus 490 --------~~~~l~~~l~-~~l~~~~~p~~i~~~~~~P------~t~~GKi~r~~L~~~~~ 535 (537)
T PLN02246 490 --------TEDEIKQFVA-KQVVFYKRIHKVFFVDSIP------KAPSGKILRKDLRAKLA 535 (537)
T ss_pred --------CHHHHHHHHH-hhCcCccccceEEEeccCC------CCCcchhhHHHHHHHHh
Confidence 0457888888 8899999999999999999 99999999999998874
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=238.04 Aligned_cols=174 Identities=20% Similarity=0.366 Sum_probs=152.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+++|++++.||+++++.+...+ .+| ||+|||++++|++|+
T Consensus 305 ~~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~d~~g~ 376 (487)
T PRK07638 305 RPNSVGRPFHNVQVRICN-EAGEEVQ---KGEIGTVYVKSPQFFMGYIIGGVLARELN--ADG--WMTVRDVGYEDEEGF 376 (487)
T ss_pred CCCCCCcccCCcEEEEEC-CCCCCCC---CCCCeEEEEecccceeeecCCHHHHhhhc--cCC--cEecCccEeEcCCCe
Confidence 467999999999999999 7788776 56899999999999999999998776543 477 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.++. ..++++|.....
T Consensus 377 l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-------------------- 435 (487)
T PRK07638 377 IYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT-------------------- 435 (487)
T ss_pred EEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC--------------------
Confidence 9999999999996 7999999999999999999999999998765 347777764221
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++++++++ ..++++++|..+++++++| +|++||++|++|++++++
T Consensus 436 ---------~~~l~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 436 ---------KQQLKSFCL-QRLSSFKIPKEWHFVDEIP------YTNSGKIARMEAKSWIEN 481 (487)
T ss_pred ---------HHHHHHHHH-HHhhcccCCcEEEEecccC------CCCcccccHHHHHHHHhc
Confidence 467777887 7889999999999999999 999999999999988765
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=242.78 Aligned_cols=180 Identities=24% Similarity=0.370 Sum_probs=157.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccccCCCeeeeeccEEEEeeC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~ 79 (228)
.++++|+|+||++++|++ +++.+++ +|+.|||+++| |+++.|||++++.+...|. +| ||+|||+++++++
T Consensus 374 ~~~~~G~p~~g~~~~i~d-~~~~~~~---~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~--~g--w~~TGDl~~~~~~ 445 (570)
T PRK04319 374 KPGSMGKPLPGIEAAIVD-DQGNELP---PNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA--GD--WYVSGDSAYMDED 445 (570)
T ss_pred CCCcCcCCCCCCEEEEEC-CCCCCCC---CCCceEEEEcCCCChHHhHhcCCHHHhhhhhc--CC--ceEeCcEEEECCC
Confidence 468999999999999999 6777765 67899999997 8999999999999988884 78 9999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+++|+||.+|+|++ +|++|+|.+||+.+.+||.|.+++|++.++. ..++++|++.+....
T Consensus 446 g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~--------------- 509 (570)
T PRK04319 446 GYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEP--------------- 509 (570)
T ss_pred eeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCC---------------
Confidence 999999999999996 7999999999999999999999999997764 348888887664210
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.+.+.++|.++++ ..++.+++|..+++++++| +|++||++|++|+++..
T Consensus 510 -------~~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 510 -------SEELKEEIRGFVK-KGLGAHAAPREIEFKDKLP------KTRSGKIMRRVLKAWEL 558 (570)
T ss_pred -------CHHHHHHHHHHHH-HhcccccCCcEEEEeCCCC------CCCchhhhHHHHHHHHh
Confidence 1123567888888 8899999999999999999 99999999999998864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-32 Score=247.82 Aligned_cols=178 Identities=21% Similarity=0.316 Sum_probs=152.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+++++++|+| +++++++ +|+.|||+++|++++.|||++|+.+. ..+| ||+|||+|+++++|+
T Consensus 311 ~~~~iG~p~~~~~v~i~d-~~g~~~~---~g~~GEl~i~g~~v~~GY~~~~~~~~----~~~~--~~~TGDl~~~~~dG~ 380 (705)
T PRK06060 311 RLGTLGRVLPPYEIRVVA-PDGTTAG---PGVEGDLWVRGPAIAKGYWNRPDSPV----ANEG--WLDTRDRVCIDSDGW 380 (705)
T ss_pred CcCcccccCCCcEEEEEC-CCCCCCC---CCCceEEEEccchhhhhhhCCCcccc----cCCC--cEECCeeEEECCCce
Confidence 467899999999999999 6777776 56899999999999999999998642 2356 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.+|+||+ +|++|+|.+||+.|.+|+.|.+++|++.++. ..++++|++......+
T Consensus 381 l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~---------------- 443 (705)
T PRK06060 381 VTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATID---------------- 443 (705)
T ss_pred EEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcC----------------
Confidence 9999999999997 7999999999999999999999999987754 3588888876542100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
....+.+.++++ +.|+.|++|..+++++++| +|++||++|++|++.+.
T Consensus 444 ------~~~~~~i~~~l~-~~L~~~~~P~~i~~v~~iP------~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 444 ------GSVMRDLHRGLL-NRLSAFKVPHRFAVVDRLP------RTPNGKLVRGALRKQSP 491 (705)
T ss_pred ------hHHHHHHHHHHH-HhCCCCcCCcEEEEeecCC------CCcchhhHHHHHHhhcc
Confidence 011456778887 8899999999999999999 99999999999998764
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=243.57 Aligned_cols=188 Identities=22% Similarity=0.306 Sum_probs=158.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC---ccCccccCCCccccccccc--cCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS---NISPGYYKNPTKTKEDFFD--EEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp---~~~~gY~~~~~~~~~~~~~--~~g~~~~~TGDl~~~ 76 (228)
+++++|.|+||++++|+|++++++++ +|+.|||+++|| +++.+||++++.+...+.. .+| ||+|||++++
T Consensus 409 ~~~~~G~p~~g~~~~i~d~~~g~~~~---~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~TGDl~~~ 483 (629)
T PRK10524 409 RLGSPGVPMYGYNVKLLNEVTGEPCG---PNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ--VYSTFDWGIR 483 (629)
T ss_pred CCCCcccCcCCceEEEEeCCCCCCCC---CCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc--EEEcCCcEEE
Confidence 46799999999999999944888876 568999999998 6889999999877665433 345 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+++|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++++|+++.....
T Consensus 484 d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~------------ 550 (629)
T PRK10524 484 DADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL------------ 550 (629)
T ss_pred cCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc------------
Confidence 999999999999999997 6999999999999999999999999998765 358899988764210
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.+.+....+.++|+++++ ..++++++|..|++++++| +|++||++|+.|++.+.
T Consensus 551 -----~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 551 -----ADREARLALEKEIMALVD-SQLGAVARPARVWFVSALP------KTRSGKLLRRAIQAIAE 604 (629)
T ss_pred -----ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCCC------CCCCcchHHHHHHHHHc
Confidence 001112334678899998 8899999999999999999 99999999999998875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-32 Score=240.91 Aligned_cols=185 Identities=27% Similarity=0.440 Sum_probs=159.8
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|.|+||++++|+|+++++.++ .|..|||+++|++++.||+++++.+...|...+|.+||+|||+|+++++|.|
T Consensus 356 ~~~~G~~~~g~~~~i~d~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l 432 (546)
T PRK08314 356 LQCLGIPTFGVDARVIDPETLEELP---PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYF 432 (546)
T ss_pred CCccCcccCCeEEEEEeCCCCcCCC---CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcE
Confidence 5689999999999999977888887 4578999999999999999999998888754345569999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|++ +|++|+|.+||+.+.++++|.+++|++.++. ..++++|+++...... .
T Consensus 433 ~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--------~-------- 495 (546)
T PRK08314 433 FITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK--------T-------- 495 (546)
T ss_pred EEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC--------C--------
Confidence 999999999997 7999999999999999999999999997765 3488999887642110 0
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
..++++++++ ..++++++|..+++++++| +|.+||++|++|++..+..
T Consensus 496 -------~~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKv~r~~L~~~~~~~ 543 (546)
T PRK08314 496 -------TEEEIIAWAR-EHMAAYKYPRIVEFVDSLP------KSGSGKILWRQLQEQEKAR 543 (546)
T ss_pred -------CHHHHHHHHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHhhh
Confidence 0357888888 8899999999999999999 9999999999998876554
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=241.16 Aligned_cols=172 Identities=24% Similarity=0.401 Sum_probs=150.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+++++++|+| +++++++ +|+.|||+++|++++.||++++.. . . .+| ||+|||++++|++|+
T Consensus 374 ~~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~--~-~--~~g--~~~TGDl~~~~~~g~ 442 (549)
T PRK07788 374 APGTVGRPPKGVTVKILD-ENGNEVP---RGVVGRIFVGNGFPFEGYTDGRDK--Q-I--IDG--LLSSGDVGYFDEDGL 442 (549)
T ss_pred cCCCcccCCCCcEEEEEC-CCcCCCC---CCCeEEEEEeCCCccccccCCCcc--c-c--cCC--ceecCceEEEcCCCC
Confidence 467999999999999999 7788776 468999999999999999998765 1 2 367 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|++ +|++|+|.+||+.|.++|.|.+|+|++.++.. .++|+|++.+....+
T Consensus 443 l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~---------------- 505 (549)
T PRK07788 443 LFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD---------------- 505 (549)
T ss_pred EEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC----------------
Confidence 9999999999995 89999999999999999999999999987653 488999887642110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ ..++++++|..+++++++| +|++||++|++|+++
T Consensus 506 ---------~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 506 ---------EDAIKDYVR-DNLARYKVPRDVVFLDELP------RNPTGKVLKRELREM 548 (549)
T ss_pred ---------HHHHHHHHH-HhhhcCCCCcEEEEeCCCC------CCCCcCEeHHHhhcc
Confidence 467888888 8899999999999999999 999999999999764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=257.19 Aligned_cols=182 Identities=30% Similarity=0.379 Sum_probs=155.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||++++|+|++++++++ +|+.|||+++||+++.||+++|+.+...+.+.+|.+||+|||++++|+||+
T Consensus 958 ~~~~vG~p~~~~~v~i~d~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633 958 KEGSVGMPLPGVAVRIVDPETFEELP---PGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGF 1034 (1146)
T ss_pred CCCCccccCCCCEEEEEcCCCCccCC---CCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCce
Confidence 46799999999999999988888887 568999999999999999999999988775434445999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCC--CcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP--VIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~--~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
+++.||.+|+|++ +|++|+|.+||+++.+|+ .+.+++|++.++.. .+++++++....
T Consensus 1035 l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~----------------- 1096 (1146)
T PRK08633 1035 LTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAED----------------- 1096 (1146)
T ss_pred EEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccC-----------------
Confidence 9999999999996 799999999999999998 46678888877653 477777763211
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+++++.+.+..++++++|..+++++++| +|++||++|++|+++.++.
T Consensus 1097 -----------~~~l~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1097 -----------VEELKRAIKESGLPNLWKPSRYFKVEALP------LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred -----------HHHHHHHHHhcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence 34566666545799999999999999999 9999999999999987764
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=242.13 Aligned_cols=181 Identities=24% Similarity=0.391 Sum_probs=150.6
Q ss_pred CCCCccCCCCCceEEEEeC-CCC---CccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEe
Q psy8218 2 STGRAGAPTTVCDIRLVDW-DEG---NYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELH 77 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~-~~~---~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~ 77 (228)
+++++|.|+|+++++|+.. +++ ++++ +|+.|||+++||+++.||++++ .+...|. .+| ||+|||+|++|
T Consensus 384 ~~~svG~~~p~~~v~i~~~d~~g~~~~~~~---~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~-~~g--w~~TGDlg~~d 456 (632)
T PRK07529 384 RIGSVGLRLPYQRVRVVILDDAGRYLRDCA---VDEVGVLCIAGPNVFSGYLEAA-HNKGLWL-EDG--WLNTGDLGRID 456 (632)
T ss_pred cCCCcccccCCceEEEEEcCCCCcccccCC---CCCceEEEEECCCccccccCCc-ccccccc-CCC--ceEcCcEEEEc
Confidence 4689999999999999643 344 4454 6789999999999999999865 4445553 467 99999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++|+|+|.||.+|+|+. +|++|+|.+||+.|.+||.|.+|+|++.++.. .++|+|++.+....+
T Consensus 457 ~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~------------ 523 (632)
T PRK07529 457 ADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASAT------------ 523 (632)
T ss_pred CCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCC------------
Confidence 99999999999999995 89999999999999999999999999987653 489999987643110
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCC-CCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLE-RFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.+++.++++ ..++ .+++|+.|++++++| +|++||++|++|++++....
T Consensus 524 -------------~~~l~~~~~-~~l~~~~~~P~~i~~v~~lP------~t~~GKi~r~~Lr~~~~~~~ 572 (632)
T PRK07529 524 -------------EAELLAFAR-DHIAERAAVPKHVRILDALP------KTAVGKIFKPALRRDAIRRV 572 (632)
T ss_pred -------------HHHHHHHHH-HhcchhccCCcEEEEecCCC------CCCCCcccHHHHHHHHHHHH
Confidence 356777777 5564 579999999999999 99999999999999886643
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=240.84 Aligned_cols=180 Identities=27% Similarity=0.411 Sum_probs=157.8
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+|+++++++|++++++++ +|+.|||+++|++++.||+++++.+...+ +.+| ||+|||+++++++|++
T Consensus 360 ~~~vG~~~~~~~v~i~d~~~~~~~p---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~g--~~~TGD~~~~~~dG~l 433 (546)
T PLN02330 360 KNSVGFILPNLEVKFIDPDTGRSLP---KNTPGELCVRSQCVMQGYYNNKEETDRTI-DEDG--WLHTGDIGYIDDDGDI 433 (546)
T ss_pred cCccccccCCcEEEEEeCCCCccCC---CCCceEEEEecchhhhhhccCccchhhhc-cCCC--ceecccEEEEeCCCcE
Confidence 4689999999999999977888876 56899999999999999999999888766 4577 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|.||.+|+|++ +|++|+|.+||+.+.+++.|.+++|++.++. ..++++|++......+
T Consensus 434 ~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~----------------- 495 (546)
T PLN02330 434 FIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES----------------- 495 (546)
T ss_pred EEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCC-----------------
Confidence 999999999997 6999999999999999999999999997654 3488888876542110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+.|.++++ ..++.+++|+.+++++++| +|++||++|++|++++...
T Consensus 496 --------~~~l~~~~~-~~l~~~~~p~~~~~v~~iP------~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 496 --------EEDILNFVA-ANVAHYKKVRVVQFVDSIP------KSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred --------HHHHHHHHH-HhcccccCceEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence 356777887 7899999999999999999 9999999999999999765
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=236.34 Aligned_cols=178 Identities=26% Similarity=0.483 Sum_probs=155.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+++++++|++ ++++.++ +|+.|||+++|++++.||+++++.+...+ .+| ||+|||+++++++|.
T Consensus 315 ~~~~~G~p~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~g~ 386 (496)
T PRK06839 315 KVGSIGKPVLFCDYELID-ENKNKVE---VGEVGELLIRGPNVMKEYWNRPDATEETI--QDG--WLCTGDLARVDEDGF 386 (496)
T ss_pred cCCCCcccCCCceEEEEC-CCcCCCC---CCCceEEEEECCCcchhhcCChHHHHHHH--cCC--CeeecceEEEcCCCc
Confidence 467999999999999999 5666665 56899999999999999999999888776 478 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|+. +|++|+|.+||+.|.++|+|.+++|++.++.. .++++|++++.....
T Consensus 387 ~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---------------- 449 (496)
T PRK06839 387 VYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI---------------- 449 (496)
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC----------------
Confidence 9999999999995 79999999999999999999999999987653 488999887642110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++++++++ ..++.+++|..+++++++| +|++||++|++|+++-++
T Consensus 450 ---------~~~l~~~~~-~~l~~~~~P~~~~~v~~~P------~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 450 ---------EKDVIEHCR-LFLAKYKIPKEIVFLKELP------KNATGKIQKAQLVNQLKS 495 (496)
T ss_pred ---------HHHHHHHHH-hhCcCCCCCcEEEEeccCC------CCccccccHHHHHHHhhc
Confidence 356788887 7899999999999999999 999999999999987653
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=239.63 Aligned_cols=179 Identities=25% Similarity=0.467 Sum_probs=156.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|+||++++++|+++++.++ .|++|||+++||+++.||+++++.+...|. +| ||+|||+++++++|+
T Consensus 385 ~~~~vG~p~~g~~v~v~d~~~~~~~~---~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~--dg--~~~TGDl~~~~~~g~ 457 (567)
T PRK06178 385 QPVFVGLPVPGTEFKICDFETGELLP---LGAEGEIVVRTPSLLKGYWNKPEATAEALR--DG--WLHTGDIGKIDEQGF 457 (567)
T ss_pred CCcccccccCCcEEEEEcCCCCCcCC---CCCceEEEEECCcccccccCChhhhhhccc--CC--ceeecceEEEecCCe
Confidence 45679999999999999987888887 457999999999999999999998887773 78 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+||.+|+|++ +|++|+|.+||+++.++++|.++++++.++. ..++++|++......+
T Consensus 458 l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---------------- 520 (567)
T PRK06178 458 LHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT---------------- 520 (567)
T ss_pred EEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC----------------
Confidence 9999999999997 7999999999999999999999999987654 3588888886532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+++.++++ +.++.+++|. +++++++| +|++||++|++|+++++++
T Consensus 521 ---------~~~l~~~~~-~~l~~~~~p~-i~~v~~iP------~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 521 ---------AAALQAWCR-ENMAVYKVPE-IRIVDALP------MTATGKVRKQDLQALAEEL 566 (567)
T ss_pred ---------HHHHHHHHH-hcCcccCCce-EEEeccCC------CCCccceeHHHHHHHHHhh
Confidence 457888888 7899999996 88899999 9999999999999998763
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=232.79 Aligned_cols=166 Identities=24% Similarity=0.395 Sum_probs=145.4
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|+|+|+++++|+. |+.|||+++||+++.||++++. +.+| ||+|||++++|+||+|
T Consensus 282 ~~~~G~~~p~~~v~i~~------------g~~Gel~v~g~~~~~gY~~~~~-------~~~g--~~~TGDl~~~d~dG~l 340 (452)
T PRK07445 282 NNSSGQVLPHAQITIPA------------NQTGNITIQAQSLALGYYPQIL-------DSQG--IFETDDLGYLDAQGYL 340 (452)
T ss_pred CCcCCccCCCCeEEEcC------------CCcceEEEeCCccchhhcCCcc-------CCCC--EEECCCEEEEcCCCCE
Confidence 46899999999999972 3579999999999999997542 2367 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|.||.+|+|+. +|++|+|.+||..|.+||.|.+|+|++.++.. .++|++++.+....
T Consensus 341 ~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~------------------ 401 (452)
T PRK07445 341 HILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSIS------------------ 401 (452)
T ss_pred EEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCCC------------------
Confidence 999999999995 89999999999999999999999999987653 48888887654211
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.++++++++ ..++++++|+.+++++++| +|++||++|++|+++|.++|.
T Consensus 402 --------~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 402 --------LEELKTAIK-DQLSPFKQPKHWIPVPQLP------RNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred --------HHHHHHHHH-HhCCcccCCeEEEEecCCC------CCCCcccCHHHHHHHHHHhhC
Confidence 457788888 7899999999999999999 999999999999999998874
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=234.44 Aligned_cols=180 Identities=29% Similarity=0.467 Sum_probs=158.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|.|+++++++++||+++++++ .|+.|||+++|++++.||+++++.+.+.|. .+| ||+|||+++++++|.+
T Consensus 320 ~~~~G~~~~~~~v~i~d~~~~~~~~---~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~--~~~TGDl~~~~~~g~~ 393 (504)
T PRK07514 320 AGTVGFPLPGVSLRVTDPETGAELP---PGEIGMIEVKGPNVFKGYWRMPEKTAEEFR-ADG--FFITGDLGKIDERGYV 393 (504)
T ss_pred CcccccCCCCcEEEEEECCCCCCCC---CCCceEEEEecCCccccccCCchhhhhhcc-cCC--CeeecceEEEcCCccE
Confidence 5789999999999999988888887 457899999999999999999999988874 567 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|+. +|++|+|.+||+.+.++++|.+++|++.++. ..+++++++.......
T Consensus 394 ~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 455 (504)
T PRK07514 394 HIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALD----------------- 455 (504)
T ss_pred EEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCC-----------------
Confidence 999999999996 7999999999999999999999999997764 3478888876542100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+.+.+.++ ..++++++|..+++++++| +|++||++|++|+++|.+.
T Consensus 456 --------~~~l~~~~~-~~l~~~~~p~~i~~v~~~p------~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 456 --------EAAILAALK-GRLARFKQPKRVFFVDELP------RNTMGKVQKNLLREQYADL 502 (504)
T ss_pred --------HHHHHHHHH-hhcccCCCCcEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence 356777887 7799999999999999999 9999999999999998764
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=246.03 Aligned_cols=180 Identities=22% Similarity=0.290 Sum_probs=147.6
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc--------------CCCeeee
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE--------------EGKRWFR 69 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~--------------~g~~~~~ 69 (228)
+++|+|+|+++++|+|++++++++ .|++|||+++||+++.|||++++.|.+.|.+. ++.+||+
T Consensus 391 ~s~G~~~~~~~~~ivd~~~g~~~~---~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~ 467 (631)
T PRK07769 391 VSAGKVGVSEWAVIVDPETASELP---DGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVR 467 (631)
T ss_pred EeCCCcCCCcEEEEEcCCCCcCCC---CCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeee
Confidence 589999999999999977888886 56899999999999999999999998887530 1224999
Q ss_pred eccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhc-CCCcce--EEEEecCCC--------------------
Q psy8218 70 TGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKT-CPVIEN--ICVYGDSRK-------------------- 126 (228)
Q Consensus 70 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~~~v~~--a~v~~~~~~-------------------- 126 (228)
|||+|+++ +|+|+|+||.+|+|++ +|++|+|.+||..|.+ ||.|.+ ++|++.++.
T Consensus 468 TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~ 545 (631)
T PRK07769 468 TGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED 545 (631)
T ss_pred ccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence 99999995 9999999999999996 7999999999999996 899998 888887761
Q ss_pred --CeEEEEEEeCchhH-HHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCC-Cc-ceeEEEEec--cCCCCC
Q psy8218 127 --DYTVALVVPNPSRL-KEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLER-FE-IPNAVKLCS--EVWSPD 199 (228)
Q Consensus 127 --~~~~a~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~-~p~~v~~v~--~~p~~~ 199 (228)
..++|+|++.+... .+ .++|.++++ ..++. +. .|+.+++++ ++|
T Consensus 546 ~ge~~~a~v~~~~~~~~~~-------------------------~~~l~~~~~-~~l~~~~~~~p~~~~~v~~~~lP--- 596 (631)
T PRK07769 546 TSEQLVIVAERAPGAHKLD-------------------------PQPIADDIR-AAIAVRHGVTVRDVLLVPAGSIP--- 596 (631)
T ss_pred CCccEEEEEEecCcccccc-------------------------HHHHHHHHH-HHHHHHcCCCccEEEEECCCccc---
Confidence 24888888765421 00 345666666 55563 45 488888887 699
Q ss_pred CCccCccccccHHHHHHHHHH
Q psy8218 200 MGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 200 ~g~~t~~gKv~R~~l~~~~~~ 220 (228)
+|++|||+|++|++.|.+
T Consensus 597 ---~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 597 ---RTSSGKIARRACRAAYLD 614 (631)
T ss_pred ---cCCCcHHHHHHHHHHHHc
Confidence 999999999999998864
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=234.01 Aligned_cols=183 Identities=28% Similarity=0.429 Sum_probs=156.0
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
..++|.|+|+++++|++ +++..++ +|+.|||+++|++++.||+++++.+...|.+.+|.+||+|||+|++|++ +|
T Consensus 315 ~~~vg~~~~~~~~~i~~-~~~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l 389 (502)
T TIGR01734 315 RLPIGFAKPDMNLFIMD-EEGEPLP---EGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL 389 (502)
T ss_pred ccccccccCCCEEEEEC-CCCCCCC---CCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence 35799999999999999 6677776 5689999999999999999999999888765566679999999999976 99
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecC-CC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDS-RK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~-~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++.||.+|+|++ +|++|+|.+||+.+.++|.|.++++++.. .. ..++++|++.......
T Consensus 390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 452 (502)
T TIGR01734 390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEK---------------- 452 (502)
T ss_pred EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccccccc----------------
Confidence 999999999996 89999999999999999999999999843 12 3588888887643210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
...+.+++++.++ +.++++++|..+++++++| +|++||++|++|++++.
T Consensus 453 -----~~~~~~~i~~~~~-~~l~~~~~P~~~~~v~~lP------~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 453 -----EFQLTKAIKKELK-KSLPAYMIPRKFIYRDQLP------LTANGKIDRKALAEEVN 501 (502)
T ss_pred -----chhhHHHHHHHHh-hhChhhcCCcEEEEccccC------CCCCCcccHHHHHHhhc
Confidence 1122467888888 8899999999999999999 99999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=234.81 Aligned_cols=185 Identities=22% Similarity=0.382 Sum_probs=163.3
Q ss_pred CCCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--C-ccCccccCCCccccccccc-cCCCeeeeeccEEEE
Q psy8218 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--S-NISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGEL 76 (228)
Q Consensus 1 ~~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p-~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~ 76 (228)
.++|++|.|++|+.+.|.| ++|++++.. +..|+|+++. | +++++||+|++.....++. -.| +|.|||.+++
T Consensus 411 ~~pg~~~~p~~g~~v~i~d-e~g~~~~~~--~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg--~y~tGD~~~r 485 (626)
T KOG1175|consen 411 IKPGSAGKPFPGYDVQILD-ENGNELPPS--TGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPG--YYFTGDGGRR 485 (626)
T ss_pred cCccccCCCCCCcceEEEC-CCCCCcCCC--CceeEEEEeCCCCccccccccCCHHHhhhhhcccCCc--eEEecCceEE
Confidence 3789999999999999999 789988743 2789999987 4 8899999999955544432 267 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+++++||.||+|++ +|+++++++||+++..||.|.|++|++.++. +.+.|||++++..
T Consensus 486 d~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~-------------- 550 (626)
T KOG1175|consen 486 DEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS-------------- 550 (626)
T ss_pred cCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC--------------
Confidence 999999999999999997 6999999999999999999999999998876 3599999999874
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+++.++|+++++ ..+.++..|+.|++++++| +|.|||+.|++|++....
T Consensus 551 --------~~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~LP------kTrSGKimRr~lrki~~g 602 (626)
T KOG1175|consen 551 --------HDPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGLP------KTRSGKIMRRALRKIASG 602 (626)
T ss_pred --------CChHHHHHHHHHHHH-hhcCcccccceeEecCCCC------ccccchhHHHHHHHHhcc
Confidence 234566899999999 9999999999999999999 999999999999998764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=237.76 Aligned_cols=175 Identities=31% Similarity=0.499 Sum_probs=152.8
Q ss_pred CccCC--CCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 5 RAGAP--TTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 5 s~G~p--lpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++|.+ .+|++++++| +++++++ +|+.|||+++|+++++|||++++.+...|. +| ||+|||++++|++|+|
T Consensus 353 ~~g~~g~~~g~~~~i~d-~~g~~~~---~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~--~g--~~~TGD~~~~d~dG~l 424 (534)
T PRK05852 353 STGLVGRSTGAQIRIVG-SDGLPLP---AGAVGEVWLRGTTVVRGYLGDPTITAANFT--DG--WLRTGDLGSLSAAGDL 424 (534)
T ss_pred ccccCCCCCCCeEEEEC-CCCCCCC---CCCceEEEEecCcccchhcCCcccchhhhc--CC--CcccCceEEEeCCCcE
Confidence 34444 7999999999 6788776 568999999999999999999999998874 78 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|+. +|.+|+|.+||.++.++|+|.+|+|++.++.. .++++|++.......
T Consensus 425 ~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~----------------- 486 (534)
T PRK05852 425 SIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT----------------- 486 (534)
T ss_pred EEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC-----------------
Confidence 999999999995 89999999999999999999999999987643 488888875532110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|.++++ ..++++++|..+++++++| +|++||++|++|+++|.+
T Consensus 487 --------~~~i~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 487 --------AEELVQFCR-ERLAAFEIPASFQEASGLP------HTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred --------HHHHHHHHH-HhcccccCCeEEEEhhhcC------CCCCccccHHHHHHHhcc
Confidence 457888887 7799999999999999999 999999999999999865
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=260.76 Aligned_cols=209 Identities=20% Similarity=0.319 Sum_probs=157.3
Q ss_pred CCCccCCCCCceEEEEeCCC-CCccccCCCCCCceEEEecCccCccccCCCcccccccccc-------------------
Q psy8218 3 TGRAGAPTTVCDIRLVDWDE-GNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE------------------- 62 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~-~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~------------------- 62 (228)
..++|+|+++++++|+|++. +++++ +|++|||+|+||+++.||+++|+.|.+.|...
T Consensus 592 ~~~~G~~~~~~~~~ivd~~~~~~~~~---~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~ 668 (1389)
T TIGR03443 592 VMPAGKGMKNVQLLVVNRNDRTQTCG---VGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPE 668 (1389)
T ss_pred cCcCCCccCCCEEEEECCccCCCcCC---CCCceEEEecccccchhcCCChhHhhhhccCCcccCccccccccccccccc
Confidence 35789999999999999432 34555 67899999999999999999999999887421
Q ss_pred ------CCCeeeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEE
Q psy8218 63 ------EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALV 133 (228)
Q Consensus 63 ------~g~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v 133 (228)
++.+||+|||+|++++||.|+|+||.||+||+ +|++|+|.+||.+|.+||.|.+++|++.++. ..++|+|
T Consensus 669 ~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~v 747 (1389)
T TIGR03443 669 REFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYI 747 (1389)
T ss_pred ccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEE
Confidence 12359999999999999999999999999997 7999999999999999999999998875543 3589999
Q ss_pred EeCchh--HHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccH
Q psy8218 134 VPNPSR--LKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKR 211 (228)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R 211 (228)
++.... ..++..... ...+...+...........+.++++++ +.|+.|++|..+++++++| +|++|||+|
T Consensus 748 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~lP------~t~~GKidr 819 (1389)
T TIGR03443 748 VPQDKSDELEEFKSEVD-DEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKLP------LNPNGKVDK 819 (1389)
T ss_pred eccCccccccccccccc-cccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccCC------CCCCccccH
Confidence 886321 000000000 000000000001111223567888888 8899999999999999999 999999999
Q ss_pred HHHHHHHHHHHH
Q psy8218 212 KDIQERYQHEIN 223 (228)
Q Consensus 212 ~~l~~~~~~~i~ 223 (228)
++|++.+...++
T Consensus 820 ~~L~~~~~~~~~ 831 (1389)
T TIGR03443 820 PALPFPDTAQLA 831 (1389)
T ss_pred hhcCCCchhhhh
Confidence 999765544443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=237.88 Aligned_cols=174 Identities=21% Similarity=0.271 Sum_probs=135.8
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|+|+||++++|+|++.+.+++ .|+.|||+++||+++.|||++++.+ .+| ||+|||+++++ +|+|
T Consensus 344 ~~~vG~p~~g~~v~i~d~~~~~~~~---~g~~GEl~v~g~~~~~GY~~~~~~~------~~~--~~~TGDl~~~~-~G~l 411 (525)
T PRK05851 344 HAVLGNPIPGMEVRISPGDGAAGVA---GREIGEIEIRGASMMSGYLGQAPID------PDD--WFPTGDLGYLV-DGGL 411 (525)
T ss_pred eeeecCCCCCcEEEEECCCCCccCC---CCCeEEEEEecCchhhccccCCccC------CCC--ceeccceEEEE-CCEE
Confidence 3589999999999999954444555 5689999999999999999998632 367 99999999996 7999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .+.++|+.......
T Consensus 412 ~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~------------------ 472 (525)
T PRK05851 412 VVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPD------------------ 472 (525)
T ss_pred EEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcc------------------
Confidence 999999999997 79999999999999999999999999876432 35555554321100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEec--cCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.+.+.+++.+. ..+ +++|..+++++ ++| +|++||++|++|++.+++
T Consensus 473 ----~~~~~~~~~~~l~-~~l--~~~P~~~~~v~~~~lP------~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 473 ----EAGARSEVVQRVA-SEC--GVVPSDVVFVAPGSLP------RTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred ----hHHHHHHHHHHHH-HHh--CCCccEEEEECCCCcC------cCcchHHHHHHHHHHHHh
Confidence 0111233444443 222 27899999998 899 999999999999998864
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=235.98 Aligned_cols=184 Identities=23% Similarity=0.440 Sum_probs=159.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||+.++|+|+++++.++ .|+.|||+++|++++.||++++..+...+ ..++ ||+|||+++++++|.
T Consensus 369 ~~~~vG~p~~~~~v~i~d~~~~~~~~---~g~~GEl~v~g~~~~~gy~~~~~~~~~~~-~~~~--~~~TGD~~~~~~dg~ 442 (559)
T PRK08315 369 RVTTVGRALPHLEVKIVDPETGETVP---RGEQGELCTRGYSVMKGYWNDPEKTAEAI-DADG--WMHTGDLAVMDEEGY 442 (559)
T ss_pred ccCCCCccCCCcEEEEEcCccCCcCC---CCCceEEEEECchhhhhhcCChhHHhhcC-CCCC--CEEccceEEEcCCce
Confidence 46789999999999999976688887 56899999999999999999999888776 3467 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+||.++++++ +|++|++.+||+++.++++|.+++|++.++.. .++++|++.......
T Consensus 443 ~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 505 (559)
T PRK08315 443 VNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLT---------------- 505 (559)
T ss_pred EEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCC----------------
Confidence 9999999999996 79999999999999999999999999977653 478888876532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
.+.+++++. ..++.+++|..+++++++| +|++||++|.+|++++...+++
T Consensus 506 ---------~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GK~~r~~L~~~~~~~~~~ 555 (559)
T PRK08315 506 ---------EEDVRDFCR-GKIAHYKIPRYIRFVDEFP------MTVTGKIQKFKMREMMIEELGL 555 (559)
T ss_pred ---------HHHHHHHHH-hhcccccCCcEEEEcccCC------CCCCCceeHHHHHHHHHhhhch
Confidence 457778887 7899999999999999999 9999999999999998776543
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=235.19 Aligned_cols=177 Identities=28% Similarity=0.466 Sum_probs=155.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|.|++++++++.| +++++++ +|+.|||+++|++++.||+++++.+...| .+| ||+|||+++++++|++
T Consensus 339 ~~~~G~~~~g~~~~i~d-~~~~~~~---~g~~Gel~i~~~~~~~gy~~~~~~~~~~~--~~~--~~~TGDl~~~~~~g~l 410 (528)
T PRK07470 339 IGTCGFERTGMEVQIQD-DEGRELP---PGETGEICVIGPAVFAGYYNNPEANAKAF--RDG--WFRTGDLGHLDARGFL 410 (528)
T ss_pred eeccCcccCCcEEEEEC-CCCCCCC---CCCceEEEEeCCccchhhcCCHHHHHhhh--cCC--cEecceeEEEccCCeE
Confidence 57899999999999999 6788776 56899999999999999999999888777 377 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|++++ +|++|+|.+||..+.+++.|.+++|++.++.. .+++++++.+....+
T Consensus 411 ~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 472 (528)
T PRK07470 411 YITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD----------------- 472 (528)
T ss_pred EEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC-----------------
Confidence 999999999996 79999999999999999999999999987653 477788776542100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.+.++++ ..++++++|..+++++++| +|++||++|+.|++++++
T Consensus 473 --------~~~~~~~l~-~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 473 --------EAELLAWLD-GKVARYKLPKRFFFWDALP------KSGYGKITKKMVREELEE 518 (528)
T ss_pred --------HHHHHHHHH-HhhhcCCCCcEEEEeccCC------CCCcccccHHHHHHHHHh
Confidence 356778887 7899999999999999999 999999999999998876
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=233.64 Aligned_cols=177 Identities=27% Similarity=0.450 Sum_probs=153.7
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+|+++++|+| +++++++ .|+.|||+++|++++.||+++++.+... .+| ||+|||+++++++|++
T Consensus 365 ~~~~G~~~~~~~v~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~---~~g--~~~TGD~~~~~~~g~l 435 (547)
T PRK13295 365 STTDGCPLPGVEVRVVD-ADGAPLP---AGQIGRLQVRGCSNFGGYLKRPQLNGTD---ADG--WFDTGDLARIDADGYI 435 (547)
T ss_pred cCccccccCCcEEEEEC-CCCCCCC---CCCCCeEEEEcCcccccccCCccccccC---CCC--CeecceEEEEcCCceE
Confidence 46889999999999999 6777776 5689999999999999999999988765 478 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|++++ +|++|+|.+||+.|.+++.|.+++|++.++. ..++++|++.......
T Consensus 436 ~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~----------------- 497 (547)
T PRK13295 436 RISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLD----------------- 497 (547)
T ss_pred EEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCC-----------------
Confidence 999999999996 7999999999999999999999999997654 3588999887542100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++.+++++..++++++|..+++++++| +|.+||++|.+|++++.+
T Consensus 498 --------~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 498 --------FEEMVEFLKAQKVAKQYIPERLVVRDALP------RTPSGKIQKFRLREMLRG 544 (547)
T ss_pred --------HHHHHHHHHhccCccccCCcEEEEeccCC------CCCCccccHHHHHHHHhc
Confidence 35677777635799999999999999999 999999999999988754
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=234.99 Aligned_cols=175 Identities=30% Similarity=0.535 Sum_probs=153.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|++.++|+| +++.+++ +|+.|||+++|++++.|||++++.+.+.|. .+| ||+|||+|+++++|.
T Consensus 384 ~~~~~G~p~~~~~v~ivd-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-~~g--~~~TGD~g~~~~~G~ 456 (562)
T PRK12492 384 RLGTVGIPVPGTALKVID-DDGNELP---LGERGELCIKGPQVMKGYWQQPEATAEALD-AEG--WFKTGDIAVIDPDGF 456 (562)
T ss_pred cCCccceecCCCEEEEEC-CCCCCCC---CCCceEEEEeCCccccccccCchhhhhccc-CCC--ceecCcEEEECCCCe
Confidence 357899999999999999 6778776 568999999999999999999999988773 467 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|+. +|++|+|.+||..|.+|+.|.+++|++.++. ..+.+++++......
T Consensus 457 l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------- 518 (562)
T PRK12492 457 VRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLS----------------- 518 (562)
T ss_pred EEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCC-----------------
Confidence 9999999999996 6999999999999999999999999997654 347777776543211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++++++++ ..++.+++|..+++++++| +|.+||++|++|+++
T Consensus 519 ---------~~~i~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 519 ---------VEELKAYCK-ENFTGYKVPKHIVLRDSLP------MTPVGKILRRELRDI 561 (562)
T ss_pred ---------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCCCCceeHHHHHhh
Confidence 357778887 7899999999999999999 999999999999865
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-31 Score=233.31 Aligned_cols=180 Identities=34% Similarity=0.601 Sum_probs=158.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+++++++|.| +++++++ .|+.|||+++|++++.+|+++++.+...| .+| ||+|||+|+++++|.+
T Consensus 340 ~~~~G~~~~~~~~~i~~-~~~~~~~---~g~~Gei~v~~~~~~~~y~~~~~~~~~~~--~~~--~~~TGDl~~~~~~g~l 411 (523)
T PRK08316 340 PGSAGRPVLNVETRVVD-DDGNDVA---PGEVGEIVHRSPQLMLGYWDDPEKTAEAF--RGG--WFHSGDLGVMDEEGYI 411 (523)
T ss_pred cCCcccCCCCcEEEEEc-CCCCCCC---CCCcceEEEECCchhhhhcCCHHHHHHHh--hCC--CeeccceEEEcCCceE
Confidence 57899999999999999 6788777 46899999999999999999999888877 367 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|++ +|++|+|.+||+.+.++++|.+++|++.++.. .+++++++.+.....
T Consensus 412 ~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----------------- 473 (523)
T PRK08316 412 TVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVT----------------- 473 (523)
T ss_pred EEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCC-----------------
Confidence 999999999996 79999999999999999999999999976553 488888887542100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.+.+.++++ ..++.+++|..+++++++| +|++||++|++|+++|++.++
T Consensus 474 --------~~~l~~~~~-~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 474 --------EDELIAHCR-ARLAGFKVPKRVIFVDELP------RNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred --------HHHHHHHHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHHhhcc
Confidence 355677777 7789999999999999999 999999999999999998775
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=232.38 Aligned_cols=177 Identities=30% Similarity=0.575 Sum_probs=155.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|+|++++++.+ +++..++ +|+.|||+++|++++.||+++++.+...|. ++ ||+|||+++++++|+
T Consensus 317 ~~~~~G~~~~~~~~~i~~-~~~~~~~---~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~--~~--~~~TGDl~~~~~~g~ 388 (497)
T PRK06145 317 KIGSTGRALAHVEIRIAD-GAGRWLP---PNMKGEICMRGPKVTKGYWKDPEKTAEAFY--GD--WFRSGDVGYLDEEGF 388 (497)
T ss_pred cCCCcccCCCCceEEEEC-CCCCCCC---CCCceEEEEECcchhhhhcCChHHHHHHHh--CC--CeeccceEEEcCCCc
Confidence 357899999999999999 6777766 568999999999999999999999988874 67 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++++||.+|+|++ +|++|++.+||+.|.++++|.+++|++.++. ..+++++++......+
T Consensus 389 l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 451 (497)
T PRK06145 389 LYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT---------------- 451 (497)
T ss_pred EEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC----------------
Confidence 9999999999996 7999999999999999999999999997764 3588888876532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.++|.++++ ..++++++|..+++++++| +|++||++|++|+++++
T Consensus 452 ---------~~~l~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 452 ---------LEALDRHCR-QRLASFKVPRQLKVRDELP------RNPSGKVLKRVLRDELN 496 (497)
T ss_pred ---------HHHHHHHHH-HhhhcCCCCCEEEEeccCC------CCCcccccHHHHHHHhc
Confidence 457778888 7899999999999999999 99999999999998764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=232.22 Aligned_cols=179 Identities=22% Similarity=0.401 Sum_probs=157.0
Q ss_pred CCCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 3 TGRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 3 ~~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.+++|+|+ |++.++|+| ++++.++ +|+.|||+++|++++.||+++++.+...| ..+| ||+|||++++|++|+
T Consensus 352 ~~~~G~p~~~~~~v~i~d-~~~~~~~---~g~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~d~--~~~TGDl~~~d~~G~ 424 (536)
T PRK10946 352 FTTQGRPMSPDDEVWVAD-ADGNPLP---QGEVGRLMTRGPYTFRGYYKSPQHNASAF-DANG--FYCSGDLVSIDPDGY 424 (536)
T ss_pred cccCCcccCCCceEEEEC-CCCCCCC---CCCccEEEEecCccchhhcCCcccchhhc-ccCC--ceecCceEEECCCCc
Confidence 57899999 899999999 7788776 56899999999999999999999988877 3577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|++++ +|++|+|.+||..|.++++|.+++|++.++.. .+++++++.+.. .
T Consensus 425 l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~-~----------------- 485 (536)
T PRK10946 425 ITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL-K----------------- 485 (536)
T ss_pred EEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC-C-----------------
Confidence 9999999999996 79999999999999999999999999987653 478888876531 1
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
..++++++++..++++++|..+++++++| +|++||++|++|+++++...
T Consensus 486 ---------~~~l~~~~~~~~l~~~~~P~~~~~~~~iP------~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 486 ---------AVQLRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred ---------HHHHHHHHHhCCccccccCcEEEEeccCC------CCCCCcccHHHHHHHHHhhc
Confidence 35677787734599999999999999999 99999999999999987754
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=235.19 Aligned_cols=182 Identities=30% Similarity=0.525 Sum_probs=158.5
Q ss_pred CCCCccCCCCCceEEEEeCCC-CCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDE-GNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~-~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
+++++|.|+|++.++|+|++. +..++ +|..|||+++|+.++.||++++..+...|. +| ||+|||+++++++|
T Consensus 387 ~~~~~G~~~~~~~~~i~d~~~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~g--~~~TGD~~~~~~~g 459 (573)
T PRK05605 387 RPGYVGVPFPDTEVRIVDPEDPDETMP---DGEEGELLVRGPQVFKGYWNRPEETAKSFL--DG--WFRTGDVVVMEEDG 459 (573)
T ss_pred cCCccccCCCCCEEEEEcCCCCCccCC---CCCeeEEEEecCchhhhhcCChhHhhhccc--CC--CcccCCEEEEcCCC
Confidence 467999999999999999655 46665 568999999999999999999999988874 67 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
++++.||.+|+++. +|++|+|.+||+++.+++.|.+++|++.++. ..+++++++......+
T Consensus 460 ~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~--------------- 523 (573)
T PRK05605 460 FIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD--------------- 523 (573)
T ss_pred cEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---------------
Confidence 99999999999996 8999999999999999999999999987654 4588888876542110
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.+.|+++++ ..++.+++|..+++++++| +|.+||++|++|++++.+++.
T Consensus 524 ----------~~~l~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~~~ 572 (573)
T PRK05605 524 ----------PEGLRAYCR-EHLTRYKVPRRFYHVDELP------RDQLGKVRRREVREELLEKLG 572 (573)
T ss_pred ----------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCcccccHHHHHHHHHHHhc
Confidence 357788887 7899999999999999999 999999999999999987654
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=233.61 Aligned_cols=181 Identities=28% Similarity=0.475 Sum_probs=157.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|+|++.++|+|++ +.+++ .|+.|||+++|++++.||++++..+...+ ..+| ||+|||+++++++|+
T Consensus 371 ~~~~vG~p~~~~~~~i~d~~-~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~--~~~TGDl~~~~~dg~ 443 (558)
T PRK12583 371 RVETVGRTQPHLEVKVVDPD-GATVP---RGEIGELCTRGYSVMKGYWNNPEATAESI-DEDG--WMHTGDLATMDEQGY 443 (558)
T ss_pred ccCCCCccCCCCeEEEECCC-CCCCC---CCCeeEEEEEeCccchhhcCChHHHHhhc-CCCC--CeeccceEEECCCcc
Confidence 45789999999999999954 77776 56799999999999999999999887766 3567 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+++|+. +|.+|+|.+||+.+.+++.|.+++|++.++. ..+++++++.+.....
T Consensus 444 l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 506 (558)
T PRK12583 444 VRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAAS---------------- 506 (558)
T ss_pred EEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCC----------------
Confidence 9999999999995 7999999999999999999999999997654 3478888876532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.++++.+++ ..|+++++|..+++++++| +|++||++|++|++++.+++
T Consensus 507 ---------~~~i~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGK~~r~~L~~~~~~~~ 554 (558)
T PRK12583 507 ---------EEELREFCK-ARIAHFKVPRYFRFVDEFP------MTVTGKVQKFRMREISIEEL 554 (558)
T ss_pred ---------HHHHHHHHH-hhcccCcCCcEEEEeccCC------CCCCCCccHHHHHHHHHhhc
Confidence 457888887 8899999999999999999 99999999999999987764
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=231.59 Aligned_cols=182 Identities=26% Similarity=0.419 Sum_probs=157.7
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+.|.|+ +++.++|+|+++++.++ .|+.||||++|++++.||+++++.|...|. .+| ||+|||+|+++++|.+
T Consensus 349 ~~~g~~~~~~~~~~i~d~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-~~~--~~~TGDl~~~~~~g~l 422 (540)
T PRK06164 349 EGGGRPASPEARVRARDPQDGALLP---DGESGEIEIRAPSLMRGYLDNPDATARALT-DDG--YFRTGDLGYTRGDGQF 422 (540)
T ss_pred ccCccccCCCeEEEEecCCCCcCCC---CCCeeEEEEecccccccccCCchhhhhccc-CCC--ceecCCeEEEcCCceE
Confidence 4568876 89999999988888776 568999999999999999999999988874 577 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
++.||.+|+|++ +|++|+|.+||+.+.+++.|.+++|++.+.. ..+++++++.+....+
T Consensus 423 ~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~------------------ 483 (540)
T PRK06164 423 VYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPD------------------ 483 (540)
T ss_pred EEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCC------------------
Confidence 999999999997 7999999999999999999999999986533 3588888886542110
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccc---cccHHHHHHHHHHHHHh
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAF---KLKRKDIQERYQHEINR 224 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~g---Kv~R~~l~~~~~~~i~~ 224 (228)
.+++.++++ ..++++++|..+++++++| +|++| |++|++|++++++.+..
T Consensus 484 -------~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~g~~~Ki~r~~L~~~~~~~~~~ 536 (540)
T PRK06164 484 -------EAGLMAACR-EALAGFKVPARVQVVEAFP------VTESANGAKIQKHRLREMAQARLAA 536 (540)
T ss_pred -------HHHHHHHHH-hhcccCcCCcEEEEecCCC------CCCCCccccccHHHHHHHHHHhhhh
Confidence 467778888 7899999999999999999 89888 99999999998876543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=228.62 Aligned_cols=176 Identities=29% Similarity=0.457 Sum_probs=150.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|++|++++|+| +++.+++.. .+.+|||+++|++++.||+++++.+...|. ++| ||+|||+|+++++|+
T Consensus 291 ~~~~vG~~~~g~~~~i~d-~~~~~~~~~-~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~-~~~--~~~TGDlg~~~~dg~ 365 (471)
T PRK07787 291 RPGWVGLPLAGVETRLVD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAFT-ADG--WFRTGDVAVVDPDGM 365 (471)
T ss_pred cCCcccccCCCcEEEEEC-CCCCCCCCC-CCCceEEEEECcccchhhcCChhhchhccc-CCC--ceecCceEEEcCCCC
Confidence 467899999999999999 567776521 124799999999999999999999988874 577 999999999999999
Q ss_pred EEEeccC-CCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 82 IRIIDRK-KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 82 l~~~GR~-~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+++.||. +++++. +|++|+|.+||+.|.+++.|.+++|++.++. ..++++|++.....
T Consensus 366 l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~----------------- 427 (471)
T PRK07787 366 HRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVA----------------- 427 (471)
T ss_pred EEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCC-----------------
Confidence 9999996 788885 7999999999999999999999999998764 34888888733211
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.+++.++++ ..++++++|..+++++++| +|++||++|++|+++
T Consensus 428 ----------~~~l~~~l~-~~l~~~~~P~~i~~~~~iP------~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 428 ----------ADELIDFVA-QQLSVHKRPREVRFVDALP------RNAMGKVLKKQLLSE 470 (471)
T ss_pred ----------HHHHHHHHH-hhcccccCCcEEEEeccCC------CCCCccccHHHhccC
Confidence 456778887 7899999999999999999 999999999999763
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=239.56 Aligned_cols=182 Identities=23% Similarity=0.333 Sum_probs=143.8
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc---------------cCCCeee
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD---------------EEGKRWF 68 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~---------------~~g~~~~ 68 (228)
+++|+|+||++++|+|++++++++ +|+.|||+++||+++.|||++|+.|...|.+ +++.+||
T Consensus 402 ~~~G~~~~g~~v~ivd~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~ 478 (612)
T PRK12476 402 VSCGQVARSQWAVIVDPDTGAELP---DGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWL 478 (612)
T ss_pred EeCCCcCCCCEEEEEeCCCCcCCC---CCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCee
Confidence 589999999999999955588887 5689999999999999999999999887742 0123499
Q ss_pred eeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhc-CCCcce--EEEEecCCC--CeEEEEEEeCchhHHHH
Q psy8218 69 RTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKT-CPVIEN--ICVYGDSRK--DYTVALVVPNPSRLKEI 143 (228)
Q Consensus 69 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~~~v~~--a~v~~~~~~--~~~~a~v~~~~~~~~~~ 143 (228)
+|||+|++ ++|+|+|+||.+|+|++ +|++|+|.+||++|.+ ||.|.+ +++++.++. ..++++|++.+....
T Consensus 479 ~TGDlg~~-~dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~-- 554 (612)
T PRK12476 479 RTGDLGVY-LDGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR-- 554 (612)
T ss_pred ecccccee-ECCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc--
Confidence 99999998 59999999999999996 7999999999999985 899999 667776654 468888887653210
Q ss_pred HHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcc-eeEEEEec--cCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 144 AEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEI-PNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.+.+.+++.+. . .+++ |+.+++++ ++| +|++||++|++|+++|.+
T Consensus 555 ------------------~~~~~l~~~~~~~l~-~---~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 555 ------------------ADPAPAIDAIRAAVS-R---RHGLAVADVRLVPAGAIP------RTTSGKLARRACRAQYLD 606 (612)
T ss_pred ------------------ccHHHHHHHHHHHHH-H---hhCCcceEEEEECCCCcC------cCCchHHHHHHHHHHHHc
Confidence 001122344444443 1 2555 68888887 599 999999999999999865
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=232.18 Aligned_cols=173 Identities=27% Similarity=0.486 Sum_probs=151.6
Q ss_pred CCCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 3 TGRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 3 ~~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.+++|+|+ +++.++|++ ++++.++ +|+.|||+++|++++.||+++++.+...+ +.+| ||+|||+++++++|+
T Consensus 351 ~~~~G~~~~~~~~v~i~d-~~g~~~~---~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~dg--~~~TGDl~~~~~~g~ 423 (527)
T TIGR02275 351 FTTQGRPMSPDDEVRVVD-DHGNPVA---PGETGMLLTRGPYTFRGYYKAPEHNAAAF-DAEG--FYYTGDLVRLTPEGY 423 (527)
T ss_pred cccCCCCCCCCceEEEEC-CCCCCCC---CCCceEEEecCCccchhhcCChhHhHhhc-CcCC--CEEcCceEEEcCCcc
Confidence 46899999 589999999 7787776 56899999999999999999999988777 4678 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|+. +|++|+|.+||++|.+||+|.+++|++.++. ..++++|++......
T Consensus 424 l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~----------------- 485 (527)
T TIGR02275 424 IVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALK----------------- 485 (527)
T ss_pred EEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCC-----------------
Confidence 9999999999995 8999999999999999999999999998765 348888887654211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
..+|.+++++..++.+++|..+++++++| +|++||++|++|+
T Consensus 486 ---------~~~l~~~l~~~~l~~~~~P~~i~~v~~iP------~t~sGKv~r~~L~ 527 (527)
T TIGR02275 486 ---------AAQLRRFLRERGLAEYKLPDRVEFIDSLP------LTAVGKIDKKALR 527 (527)
T ss_pred ---------HHHHHHHHHhCCCccccCCCEEEEeccCC------CCCccceeHHhcC
Confidence 46788888744599999999999999999 9999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=232.79 Aligned_cols=177 Identities=28% Similarity=0.381 Sum_probs=154.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC---ccCccccCCCccccccccccCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS---NISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp---~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~ 78 (228)
+++++|.|+++++++|++ +++++++ .|..|||+++|+ +++.||+++++.+...| .+| ||+|||++++++
T Consensus 341 ~~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~--~~~--~~~TGD~~~~~~ 412 (542)
T PRK06155 341 RPGSMGRLAPGFEARVVD-EHDQELP---DGEPGELLLRADEPFAFATGYFGMPEKTVEAW--RNL--WFHTGDRVVRDA 412 (542)
T ss_pred CCCCcCccCCCceEEEEC-CCCCCCC---CCCceEEEEecCCccccchhhcCCHHHHHHhh--cCC--cEeccceEEEcC
Confidence 467899999999999999 6788877 457999999998 69999999999888777 378 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+++|.||.+|+|+. +|++|+|.+||+++.++++|.+++|++.++. ..+.+++++......+
T Consensus 413 dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~------------- 478 (542)
T PRK06155 413 DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALE------------- 478 (542)
T ss_pred CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCC-------------
Confidence 9999999999999995 8999999999999999999999999988764 3477778776532110
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
..++.++++ ..++.+++|..+++++++| +|++||++|++|++++-
T Consensus 479 ------------~~~~~~~~~-~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 479 ------------PVALVRHCE-PRLAYFAVPRYVEFVAALP------KTENGKVQKFVLREQGV 523 (542)
T ss_pred ------------HHHHHHHHH-hhCcCccCCcEEEEeccCC------CCcccceeHHHHHhhcc
Confidence 457788888 8899999999999999999 99999999999998763
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=230.30 Aligned_cols=177 Identities=21% Similarity=0.332 Sum_probs=151.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc-cCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~~G 80 (228)
.++++|+|+|+ .++|+| ++++.++ +|+.|||+++|++++.||+++|+.+...+.. .+| |++|||++++|++|
T Consensus 321 ~~~~~G~~~~g-~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~--w~~tGDl~~~~~dg 393 (501)
T PRK13390 321 HPGSVGRSVLG-DLHICD-DDGNELP---AGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPF--WTTVGDLGSVDEDG 393 (501)
T ss_pred CCCCcCCcccc-eEEEEC-CCCCCCC---CCCceEEEEecCCccccccCChhhhHHhhccCCCc--eEEcCceEEECCCC
Confidence 35799999999 799999 7787776 6689999999999999999999999887643 246 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+++|.||.+++|+. +|++|+|.+||+.|.+++.|.+++|++.++.. .+++++++......
T Consensus 394 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~---------------- 456 (501)
T PRK13390 394 YLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRG---------------- 456 (501)
T ss_pred eEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCc----------------
Confidence 99999999999996 79999999999999999999999999987653 47888877643210
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.....++|.++++ ..++.+++|..+++++++| +|++||++|++|+
T Consensus 457 ------~~~~~~~l~~~~~-~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~L~ 501 (501)
T PRK13390 457 ------SDELARELIDYTR-SRIAHYKAPRSVEFVDELP------RTPTGKLVKGLLR 501 (501)
T ss_pred ------chhhHHHHHHHHH-HhcccCCCCcEEEEeccCC------CCCccceehhhcC
Confidence 0112457888888 7899999999999999999 9999999999874
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=232.09 Aligned_cols=171 Identities=26% Similarity=0.423 Sum_probs=147.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+++++++|+| +++++++ .|+.|||+++||+++.||+ ++.+.. + .+| ||+|||+++++++|+
T Consensus 363 ~~~~vG~p~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~~~~gY~--~~~~~~-~--~~g--~~~TGDl~~~~~~g~ 431 (537)
T PRK13382 363 APDTAGRPAEGTEIRILD-QDFREVP---TGEVGTIFVRNDTQFDGYT--SGSTKD-F--HDG--FMASGDVGYLDENGR 431 (537)
T ss_pred CCCCccccCcCcEEEEEC-CCCCCCC---CCCeeEEEEEcCCcccCcc--ccchhh-c--cCC--CEeeCceEEEeCCCc
Confidence 467999999999999999 6788776 5689999999999999998 444443 3 267 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|+. +|++|++.+||..|.++|+|.+++|++.++.. .++++|++.+....
T Consensus 432 l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~----------------- 493 (537)
T PRK13382 432 LFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASA----------------- 493 (537)
T ss_pred EEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCC-----------------
Confidence 9999999999995 79999999999999999999999999987653 48888988654210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
..++++++++ ..++.+++|..+++++++| +|++||++|++|++
T Consensus 494 --------~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~gK~~r~~L~~ 536 (537)
T PRK13382 494 --------TPETLKQHVR-DNLANYKVPRDIVVLDELP------RGATGKILRRELQA 536 (537)
T ss_pred --------CHHHHHHHHH-HhccCCCCCcEEEEeccCC------CCCCCCCcHHhhCC
Confidence 0467888888 8899999999999999999 99999999999864
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=230.42 Aligned_cols=178 Identities=30% Similarity=0.483 Sum_probs=156.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||++++|++ +++++++ +|+.|||+++|+.++.||++++..+...+ .+| ||+|||+++++++|.
T Consensus 337 ~~~~~G~p~~g~~v~i~~-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~g~ 408 (524)
T PRK06188 337 RLTSCGRPTPGLRVALLD-EDGREVA---QGEVGEICVRGPLVMDGYWNRPEETAEAF--RDG--WLHTGDVAREDEDGF 408 (524)
T ss_pred cCCccccccCCcEEEEEc-CCCCCCC---CCCeeEEEEECcchhhhhcCChHHhhhhh--cCC--ceeecceEEEcCCcc
Confidence 357899999999999999 6688776 56899999999999999999999888777 378 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.++.+++ +|++|+|.+||++|.++++|.+++|++.++. ..+.+++++.......
T Consensus 409 ~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 471 (524)
T PRK06188 409 YYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD---------------- 471 (524)
T ss_pred EEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC----------------
Confidence 9999999999996 7999999999999999999999999987654 3588888876542110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|.++++ ..++.+++|..|++++++| +|++||++|.+|+++|.+
T Consensus 472 ---------~~~l~~~~~-~~l~~~~~p~~i~~v~~~P------~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 472 ---------AAELQAHVK-ERKGSVHAPKQVDFVDSLP------LTALGKPDKKALRARYWE 517 (524)
T ss_pred ---------HHHHHHHHH-HhcccCCCCcEEEEecCCC------CCccccccHHHHHHHHHh
Confidence 456778887 7889999999999999999 999999999999999965
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=227.16 Aligned_cols=184 Identities=28% Similarity=0.424 Sum_probs=158.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+..++|.|+++++++|++ +++.+++ +|+.|||+++|++++.||+++++.+...|.+.+|.+||+|||++++ ++|+
T Consensus 316 ~~~~~g~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~ 390 (503)
T PRK04813 316 KRLPIGYAKPDSPLLIID-EEGTKLP---DGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGL 390 (503)
T ss_pred CCCcccccCCCCEEEEEC-CCCCCCC---CCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCe
Confidence 356899999999999999 7888776 5679999999999999999999999888765566679999999999 8999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|++ +|++|++.+||+.+.++|+|.+++|++.++. ..+++++++......
T Consensus 391 ~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------- 452 (503)
T PRK04813 391 LFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE----------------- 452 (503)
T ss_pred EEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc-----------------
Confidence 9999999999996 7999999999999999999999999986543 358888887664211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
....+.+.++++++ +.++.+++|..+++++++| +|++||++|++|++++.
T Consensus 453 ----~~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 453 ----REFELTKAIKKELK-ERLMEYMIPRKFIYRDSLP------LTPNGKIDRKALIEEVN 502 (503)
T ss_pred ----ccchhHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCCCCCcHHHHHHHhc
Confidence 01123467888888 7899999999999999999 99999999999999875
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=227.51 Aligned_cols=175 Identities=30% Similarity=0.573 Sum_probs=152.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|++++++.+ + +++++ .|+.|||+++||+++.||+++++.+...| .+| ||+|||+++++++|+
T Consensus 305 ~~~~vG~p~~~~~~~i~~-~-~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~~--~~~tGDl~~~~~~g~ 375 (483)
T PRK03640 305 KLGSAGKPLFPCELKIEK-D-GVVVP---PFEEGEIVVKGPNVTKGYLNREDATRETF--QDG--WFKTGDIGYLDEEGF 375 (483)
T ss_pred cCCCcccccCCcEEEEec-C-CCcCC---CCCceEEEEECcchhhhhcCCHHHHHHHH--hcC--CeeccceEEEcCCCC
Confidence 468999999999999998 3 35554 56899999999999999999999888877 378 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+++. +|.+|++.+||+.+.++++|.++++++.++.. .+++++++.....
T Consensus 376 l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~------------------ 436 (483)
T PRK03640 376 LYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVT------------------ 436 (483)
T ss_pred EEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCC------------------
Confidence 9999999999996 79999999999999999999999999876543 3677676543211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.++++++ ..++++++|..+++++++| +|++||++|++|++++.+
T Consensus 437 ---------~~~l~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 437 ---------EEELRHFCE-EKLAKYKVPKRFYFVEELP------RNASGKLLRHELKQLVEE 482 (483)
T ss_pred ---------HHHHHHHHH-HhccCCCCCcEEEEeCCCC------CCCccceeHHHHHHHHhh
Confidence 456778887 7899999999999999999 999999999999999875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=230.53 Aligned_cols=173 Identities=26% Similarity=0.422 Sum_probs=152.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec---CccCccccCCCccccccccccCCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG---SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g---p~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~ 79 (228)
.+++|.|+++++++++| +++++++ .|+.|||+++| ++++.|||++++.+.+.| ..+| ||+|||+++++++
T Consensus 339 ~~~~G~~~~g~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~-~~~g--~~~TGDl~~~~~~ 411 (517)
T PRK08008 339 WPSIGRPGFCYEAEIRD-DHNRPLP---AGEIGEICIKGVPGKTIFKEYYLDPKATAKVL-EADG--WLHTGDTGYVDEE 411 (517)
T ss_pred CCccccCCCCcEEEEEC-CCCCCCC---CCCcceEEEeCCCCcchhhhHhCChHHHhhcc-cCCC--CeeccceEEECCC
Confidence 56899999999999999 7888887 56799999997 689999999999998887 4678 9999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|.++++||.+|+|+. +|++|+|.+||+++.+++.|.+++|++.++. ..+.++|+++......
T Consensus 412 g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~-------------- 476 (517)
T PRK08008 412 GFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLS-------------- 476 (517)
T ss_pred CcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCC--------------
Confidence 999999999999996 7999999999999999999999999998764 3488889887642110
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.+++.++++ ..++++++|..+++++++| +|++||++|+.|+
T Consensus 477 -----------~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~gK~~r~~l~ 517 (517)
T PRK08008 477 -----------EEEFFAFCE-QNMAKFKVPSYLEIRKDLP------RNCSGKIIKKNLK 517 (517)
T ss_pred -----------HHHHHHHHH-hhcccccCCcEEEEeccCC------CCCccceehhhcC
Confidence 457888888 7899999999999999999 9999999999864
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=276.56 Aligned_cols=179 Identities=26% Similarity=0.329 Sum_probs=159.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~~ 79 (228)
..++|+|++|++++|+| ++++++| .|++|||+|+||++++||+++|+.|++.|... +|.+||+|||+|++++|
T Consensus 824 ~~~iG~p~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~d 899 (5163)
T PRK12316 824 SVPIGRPIANLACYILD-ANLEPVP---VGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRAD 899 (5163)
T ss_pred CCCCccccCCCEEEEEC-CCCCCCC---CCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCC
Confidence 46899999999999999 6778776 56899999999999999999999999888642 46679999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|.|+|+||.|++||+ +|++|+|.+||.+|.+||.|.+|+|++.+ ...++|+|++......
T Consensus 900 G~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~~------------------ 959 (5163)
T PRK12316 900 GVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGGD------------------ 959 (5163)
T ss_pred CCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCCC------------------
Confidence 999999999999997 69999999999999999999999999987 6789999998764210
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
..+.++++++ ..|+.|++|..|++++++| +|++||++|++|.+.+.
T Consensus 960 -------~~~~l~~~l~-~~Lp~y~vP~~i~~v~~lP------~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 960 -------WREALKAHLA-ASLPEYMVPAQWLALERLP------LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred -------CHHHHHHHHH-hhCCCccCCCeEEEHhhCC------CCCCCChhHHhhcCccc
Confidence 0467888888 8899999999999999999 99999999999987643
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=272.87 Aligned_cols=179 Identities=27% Similarity=0.407 Sum_probs=158.1
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc----cCCCeeeeeccEEEEee
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD----EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~----~~g~~~~~TGDl~~~~~ 78 (228)
..++|+|++|++++|+| ++++++| +|++|||+|+|+++++||+++|+.|++.|.. ..|.+||+|||+|++++
T Consensus 3408 ~~~iG~p~~~~~~~v~d-~~~~~vp---~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~ 3483 (3956)
T PRK12467 3408 YAPIGRPVAGRSIYVLD-GQLNPVP---VGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA 3483 (3956)
T ss_pred CCCCccccCCCEEEEEC-CCCCCCC---CCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC
Confidence 36899999999999999 7888887 6789999999999999999999999999864 24678999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC--CCeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR--KDYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
||+|+|+||.|++||+ +|++|+|.+||.+|.++|+|.+|+|++.++ ...++|+|++......
T Consensus 3484 dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~--------------- 3547 (3956)
T PRK12467 3484 DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGD--------------- 3547 (3956)
T ss_pred CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcc---------------
Confidence 9999999999999998 699999999999999999999999997643 2469999998653211
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~ 218 (228)
..+.++++++ ..||.|++|..|++++++| +|++||++|++|.+.+
T Consensus 3548 ----------~~~~l~~~l~-~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3548 ----------WRETLRDHLA-ASLPDYMVPAQLLVLAAMP------LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred ----------cHHHHHHHHh-ccCChhhCCCeeeeeccCC------CCCCCccchhhcCCCC
Confidence 1467888888 8999999999999999999 9999999999998654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=229.68 Aligned_cols=181 Identities=28% Similarity=0.464 Sum_probs=157.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|++.++|+| ++++.++ .|+.|||+++|+.++.||+++++.+...|. +| ||+|||+++++++|.
T Consensus 343 ~~~~~G~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~--~~--~~~TGDl~~~~~~g~ 414 (542)
T PRK07786 343 KLGSVGKVIPTVAARVVD-ENMNDVP---VGEVGEIVYRAPTLMSGYWNNPEATAEAFA--GG--WFHSGDLVRQDEEGY 414 (542)
T ss_pred cCCCccccCCCceEEEEC-CCCCCCc---CCCceEEEEEChhhhhhhcCCHHHHHHHhh--CC--cccccceEEEcCCce
Confidence 357899999999999999 6777776 568999999999999999999999988873 67 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++++||.+|+|++ +|++|++.+||++|.+++.|.+++|++.++. ..+++++++......
T Consensus 415 ~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------- 476 (542)
T PRK07786 415 VWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA----------------- 476 (542)
T ss_pred EEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC-----------------
Confidence 9999999999996 7999999999999999999999999987654 357888877643210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
...+++.++++ ..++++++|..+++++++| +|++||++|++|+++|++..
T Consensus 477 -------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 477 -------LTLEDLAEFLT-DRLARYKHPKALEIVDALP------RNPAGKVLKTELRERYGACV 526 (542)
T ss_pred -------CCHHHHHHHHH-hhccCCCCCCEEEEeccCC------CCCcccccHHHHHHHHHhhh
Confidence 00467788887 7899999999999999999 99999999999999998754
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=228.41 Aligned_cols=180 Identities=23% Similarity=0.320 Sum_probs=150.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCC---------CCCCceEEE-ecCccCccccCCCccccccccccCCCeeeeec
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDK---------PFPRGEILI-GGSNISPGYYKNPTKTKEDFFDEEGKRWFRTG 71 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~---------~g~~Gel~i-~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TG 71 (228)
.++++|.|+++ +++++++++..++.+. .+..|||++ +|++++.||+++++.+...|. +| ||+||
T Consensus 313 ~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~--~g--~~~TG 386 (529)
T PRK07867 313 PPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR--GG--VYWSG 386 (529)
T ss_pred CCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc--CC--eEeec
Confidence 35789999999 6788867777776431 011899999 999999999999999888773 78 99999
Q ss_pred cEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcC
Q psy8218 72 DIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLN 148 (228)
Q Consensus 72 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~ 148 (228)
|+++++++|+++|.||.+|+|++ +|++|+|.+||++|.++|.|.+|+|++.++.. .+++++++.++...+
T Consensus 387 D~~~~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~------ 459 (529)
T PRK07867 387 DLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD------ 459 (529)
T ss_pred cEEEEeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC------
Confidence 99999999999999999999997 89999999999999999999999999987643 478888876542100
Q ss_pred CCchhhHhhcCChHHHHHHHHHHHHhhhh-CCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 149 LDSLTFQQLCTHPEIEKQVLVELQEHGKK-SNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.+++++++++ ..++.+++|..+++++++| +|++||++|++|+++..
T Consensus 460 -------------------~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKv~r~~L~~~~~ 506 (529)
T PRK07867 460 -------------------PDAFAEFLAAQPDLGPKQWPSYVRVCAELP------RTATFKVLKRQLSAEGV 506 (529)
T ss_pred -------------------HHHHHHHHHhhccCCcccCCeEEEEeeccC------CCCCcceeHHHHHHhcC
Confidence 3455666652 3599999999999999999 99999999999998764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=230.34 Aligned_cols=174 Identities=26% Similarity=0.474 Sum_probs=152.4
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|++|+++++++ +++++++ +|..|||+++|++++.||+++++.+...+. .+| ||+|||+++++++|.+
T Consensus 379 ~~~vG~p~~g~~v~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~~g--~~~TGDl~~~~~~g~~ 451 (557)
T PRK07059 379 SGTIGLPLPSTEVSIRD-DDGNDLP---LGEPGEICIRGPQVMAGYWNRPDETAKVMT-ADG--FFRTGDVGVMDERGYT 451 (557)
T ss_pred CCcccCccCCcEEEEEC-CCCCCCC---CCCceEEEEeCCccchhhhcCHHHHhhhcc-cCC--ceecCcEEEEcCCCcE
Confidence 57899999999999999 7788776 568999999999999999999998887763 578 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|+. +|++|+|.+||+++.++++|.+++|++.++. ..++++++.......
T Consensus 452 ~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~------------------ 512 (557)
T PRK07059 452 KIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALT------------------ 512 (557)
T ss_pred EEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCC------------------
Confidence 999999999996 7999999999999999999999999987654 347787776543211
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.+++.+++. +.++.+++|..+++++++| +|++||++|+.|+++
T Consensus 513 --------~~~l~~~~~-~~l~~~~~P~~i~~v~~~P------~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 513 --------EEDVKAFCK-ERLTNYKRPKFVEFRTELP------KTNVGKILRRELRDG 555 (557)
T ss_pred --------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCcccceeHHHHHhh
Confidence 356777887 7899999999999999999 999999999999865
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=229.75 Aligned_cols=187 Identities=27% Similarity=0.367 Sum_probs=148.7
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEe
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRII 85 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~ 85 (228)
.+.++++ +.+.+++.++.++.. .+..|||+++||+++.|||++|+.+...| ++| ||+|||+|++|++|+|+|.
T Consensus 367 ~~~~~~~--v~i~~~~~~~~v~~~-~~~~GEl~v~g~~~~~GY~~~~~~t~~~f--~~g--w~~TGDlg~~d~dG~l~i~ 439 (579)
T PLN03102 367 SILGLAD--VDVKNKETQESVPRD-GKTMGEIVIKGSSIMKGYLKNPKATSEAF--KHG--WLNTGDVGVIHPDGHVEIK 439 (579)
T ss_pred ccccccc--eEEeccccccccCCC-CCCceEEEEECcchhhhhcCChhhhHhhh--ccC--ceecCceEEEcCCCeEEEE
Confidence 3344444 455564566666532 23679999999999999999999998887 378 9999999999999999999
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||.+|+|+. +|++|+|.+||..+.+||.|.+++|++.++. ..++|+|++......+. ....++.
T Consensus 440 GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~--------~~~~~~~---- 506 (579)
T PLN03102 440 DRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKE--------DRVDKLV---- 506 (579)
T ss_pred eccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccc--------ccccccc----
Confidence 999999996 7999999999999999999999999998765 35889998875421100 0000000
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.-..+++++++ ..|+++++|..+++++++| +|++||++|++|++++.+.+
T Consensus 507 ---~~~~~l~~~~~-~~L~~~~~P~~i~~~~~~P------~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 507 ---TRERDLIEYCR-ENLPHFMCPRKVVFLQELP------KNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred ---ccHHHHHHHHH-hhcccccCCeEEEEcccCC------CCCcccccHHHHHHHHHHhh
Confidence 00356888888 7799999999999999999 99999999999999987744
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=228.55 Aligned_cols=183 Identities=25% Similarity=0.398 Sum_probs=156.4
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|++++.++++| +++++++ +|+.|||+++|++++.||+++++.+...+ ..+| ||+|||+++++++|++
T Consensus 354 ~~~~G~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~g--~~~TGDl~~~~~~g~l 426 (547)
T PRK06087 354 MHTDGYAAAGVEIKVVD-EARKTLP---PGCEGEEASRGPNVFMGYLDEPELTARAL-DEEG--WYYSGDLCRMDEAGYI 426 (547)
T ss_pred CCcCCccCCCceEEEEc-CCCCCCc---CCCcceEEEecccccccccCCHHHHHHHh-CCCC--CcCcCceEEECCCCCE
Confidence 45789999999999999 7777776 56899999999999999999999887776 3467 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|.|+. +|++|+|.+||++|.++++|.+++|++.++.. .++++|++...... .+
T Consensus 427 ~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---------~~------- 489 (547)
T PRK06087 427 KITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHS---------LT------- 489 (547)
T ss_pred EEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCC---------CC-------
Confidence 999999999995 79999999999999999999999999976553 48888887652100 00
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.+++.+++....++++++|..|.+++++| +|.+||++|++|++++.+++.
T Consensus 490 --------~~~~~~~~~~~~l~~~~~P~~i~~v~~iP------~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 490 --------LEEVVAFFSRKRVAKYKYPEHIVVIDKLP------RTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred --------HHHHHHHHHhccccccCCCeEEEEeccCC------CCCCCcCcHHHHHHHHHHHhh
Confidence 34566665436799999999999999999 999999999999999988754
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=229.21 Aligned_cols=179 Identities=25% Similarity=0.423 Sum_probs=156.9
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|++++.+++++++++..++ +|..|||+++|+.++.||+++++.+...+ .+| ||+|||+++++++|.+
T Consensus 375 ~~~~G~~~~~~~~~i~~~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~~~~~~--~~g--~~~TGD~~~~~~~g~~ 447 (563)
T PRK06710 375 PGSIGVPWPDTEAMIMSLETGEALP---PGEIGEIVVKGPQIMKGYWNKPEETAAVL--QDG--WLHTGDVGYMDEDGFF 447 (563)
T ss_pred CCccCCCCCCCeEEEEECCCCccCC---CCCceEEEEecCccchhhhCChHHHhhhc--ccC--cccccceEEEcCCCcE
Confidence 5789999999999999977887776 45789999999999999999999988777 378 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|++ +|.+|+|.+||+.|.+++.|.+++|++.++. ..++++|++.+....+
T Consensus 448 ~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~----------------- 509 (563)
T PRK06710 448 YVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS----------------- 509 (563)
T ss_pred EEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC-----------------
Confidence 999999999996 7999999999999999999999999997754 3488888876542110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++++++++ ..++.+++|..+++++++| +|++||++|++|++++..+
T Consensus 510 --------~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 510 --------EEELNQFAR-KYLAAYKVPKVYEFRDELP------KTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred --------HHHHHHHHH-HhcccccCCcEEEEcccCC------CCccchhhHHHHHHHHhhc
Confidence 456777887 7899999999999999999 9999999999999988653
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=228.44 Aligned_cols=174 Identities=26% Similarity=0.496 Sum_probs=151.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|++++.+++++ ++++.++ .|+.|||+++|++++.||+++++.+.+.| ..+| ||+|||+++++++|++
T Consensus 381 ~~~vG~~~~~~~v~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~g--~~~TGD~~~~~~~g~l 453 (560)
T PRK08751 381 NGSIGLPIPSTDACIKD-DAGTVLA---IGEIGELCIKGPQVMKGYWKRPEETAKVM-DADG--WLHTGDIARMDEQGFV 453 (560)
T ss_pred CCCcCccCCCceEEEEC-CCCCCCC---CCCceEEEEecCccchhhcCChhhhhhcc-ccCC--CccccceEEEcCCceE
Confidence 47899999999999999 7888776 45789999999999999999999988777 4567 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|++ +|++|+|.+||+.+..+++|.+++|++.++.. .+.++++.......
T Consensus 454 ~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~------------------ 514 (560)
T PRK08751 454 YIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALT------------------ 514 (560)
T ss_pred EEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCC------------------
Confidence 999999999997 79999999999999999999999999977643 36666665432111
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.+++.+.++ ..++.+++|..+++++++| +|++||++|++|++.
T Consensus 515 --------~~~l~~~~~-~~l~~~~~P~~v~~v~~lP------~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 515 --------AEDVKAHAR-ANLTGYKQPRIIEFRKELP------KTNVGKILRRELRDA 557 (560)
T ss_pred --------HHHHHHHHH-HhhhhccCCeEEEEhhhCC------CCccccccHHHHHHh
Confidence 356777787 7799999999999999999 999999999999876
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=247.65 Aligned_cols=177 Identities=22% Similarity=0.374 Sum_probs=153.1
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~~ 79 (228)
+.++|.|++++.++|+| +.+++++ +|..|||+|+|+++++||+++|+.|.+.|... +|.+||+|||+|+++++
T Consensus 775 ~~~iG~p~~~~~~~i~d-~~~~~~~---~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~ 850 (1296)
T PRK10252 775 SVPIGYPVWNTGLRILD-ARMRPVP---PGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDD 850 (1296)
T ss_pred CCCcccccCCCEEEEEC-CCCCCCC---CCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCC
Confidence 45799999999999999 7888887 56899999999999999999999999888643 26679999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEec---------CCCCeEEEEEEeCchhHHHHHHHcCCC
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGD---------SRKDYTVALVVPNPSRLKEIAEKLNLD 150 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~---------~~~~~~~a~v~~~~~~~~~~~~~~~~~ 150 (228)
|.|+|+||.|++||+ +|++|++.+||.+|.+||.|.+++|++. .+...++++|++......+
T Consensus 851 G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~-------- 921 (1296)
T PRK10252 851 GAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLD-------- 921 (1296)
T ss_pred CcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCC--------
Confidence 999999999999997 6999999999999999999999987653 1123689999876532100
Q ss_pred chhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 151 SLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.++|+++++ ..++.+++|..++.++++| +|++||++|++|.+
T Consensus 922 -----------------~~~l~~~l~-~~Lp~~~~P~~~~~~~~lP------~t~~GKidr~~L~~ 963 (1296)
T PRK10252 922 -----------------TSALQAQLR-ERLPPHMVPVVLLQLDQLP------LSANGKLDRKALPL 963 (1296)
T ss_pred -----------------HHHHHHHHH-hhCchhcCCcEEEEecCCC------CCCCcChhHHhcCC
Confidence 456788888 8899999999999999999 99999999999865
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=226.00 Aligned_cols=175 Identities=23% Similarity=0.432 Sum_probs=149.3
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
.++|+|+||++++|+| ++++.++.+ .++.|||+++|++++.||++++. ..+. +| ||+|||+++++++|+|+
T Consensus 356 ~~~G~p~pg~~~~i~d-~~~~~~~~~-~~~~Gei~v~g~~~~~gy~~~~~---~~~~--~g--~~~TGD~~~~~~dg~l~ 426 (539)
T PRK07008 356 EKQGRVIYGVDMKIVG-DDGRELPWD-GKAFGDLQVRGPWVIDRYFRGDA---SPLV--DG--WFPTGDVATIDADGFMQ 426 (539)
T ss_pred ccCCccccceEEEEEC-CCCCccCCC-CCcceEEEEeCCccchhhcCChh---hhhc--CC--CcccCceEEEcCCCcEE
Confidence 5899999999999999 677777642 22579999999999999999983 2332 67 99999999999999999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+.||.+|+|+. +|++|+|.+||..+.++|.|.++++++.++. ..++++|+..+....
T Consensus 427 ~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------------- 486 (539)
T PRK07008 427 ITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEV------------------- 486 (539)
T ss_pred EeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCcc-------------------
Confidence 99999999995 8999999999999999999999999998764 347777776543210
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
..+.+.++++ ..+++++.|..+++++++| +|++||++|++|++++.+
T Consensus 487 ------~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 487 ------TREELLAFYE-GKVAKWWIPDDVVFVDAIP------HTATGKLQKLKLREQFRD 533 (539)
T ss_pred ------CHHHHHHHHH-hhcccccCCeEEEEecCCC------CCCccceeHHHHHHHHHh
Confidence 0467888888 8899999999999999999 999999999999998876
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=225.65 Aligned_cols=172 Identities=24% Similarity=0.432 Sum_probs=147.4
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
..++|+|+|+++++|++ +++++++ +|+.|||+++|++++.||+++++.+.. ..+| ||+|||+++++++|.|
T Consensus 363 ~~~~G~~~~g~~v~i~~-~~~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~---~~~~--~~~TGD~~~~~~~g~l 433 (538)
T TIGR03208 363 STTDGRPLPGVEVKVID-ANGAKLS---QGETGRLLVRGCSNFGGYLKRPHLNST---DAEG--WFDTGDLAFQDAEGYI 433 (538)
T ss_pred cCcccccCCCCEEEEEC-CCCCCCc---CCCCcEEEEecCcccccccCCcccccc---cCCC--ceeccceEEECCCCcE
Confidence 35789999999999999 6777776 567899999999999999999987652 2466 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+++||.+|+|+. +|++|+|.+||.+|.+|+.|.+++|++.++. ..++++|++......+
T Consensus 434 ~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~----------------- 495 (538)
T TIGR03208 434 RINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD----------------- 495 (538)
T ss_pred EEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCC-----------------
Confidence 999999999995 8999999999999999999999999998765 3488898886542110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.+++.+++++..++.+++|..+++++++| +|++||++|++|+
T Consensus 496 --------~~~l~~~~~~~~l~~~~~P~~i~~v~~iP------~t~~gKv~r~~L~ 537 (538)
T TIGR03208 496 --------FAAMVAFLKAQKVALQYIPERLEVVDALP------ATPAGKIQKFRLR 537 (538)
T ss_pred --------HHHHHHHHHhcchhhccCCcEEEEeccCC------CCCccccchHhhc
Confidence 34566777634789999999999999999 9999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=269.78 Aligned_cols=176 Identities=28% Similarity=0.415 Sum_probs=157.6
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~~ 79 (228)
.+++|+|+++++++|+| +.++.+| +|.+|||+|+|+++++||+++|+.|++.|... .|.+||+|||+|+++++
T Consensus 3362 ~~~iG~p~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~d 3437 (5163)
T PRK12316 3362 AVPIGRPIANRACYILD-GSLEPVP---VGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437 (5163)
T ss_pred CCccceecCCCEEEEEC-CCCCCCC---CCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCC
Confidence 56899999999999999 7888887 56899999999999999999999999988642 35679999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|.|+|+||+|++||+ +|++|++.+||..|.++|+|.+|+|++.. ...++|+|++......
T Consensus 3438 G~l~~~GR~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~-~~~l~a~vv~~~~~~~------------------ 3497 (5163)
T PRK12316 3438 GVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVD-GRQLVAYVVPEDEAGD------------------ 3497 (5163)
T ss_pred CCEEEecccCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEcc-CCeEEEEEEcCCcCcc------------------
Confidence 999999999999998 69999999999999999999999999876 5789999998653211
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
..+.|+++++ ..||.|++|..+++++++| +|++||++|++|.+
T Consensus 3498 -------~~~~l~~~l~-~~Lp~ymvP~~~~~~~~lP------~t~~GKvdr~~L~~ 3540 (5163)
T PRK12316 3498 -------LREALKAHLK-ASLPEYMVPAHLLFLERMP------LTPNGKLDRKALPR 3540 (5163)
T ss_pred -------cHHHHHHHHH-hhCCcccCcceeeeHhhcC------CCCCcchhHHhcCC
Confidence 1456888888 8899999999999999999 99999999999965
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=230.40 Aligned_cols=173 Identities=23% Similarity=0.313 Sum_probs=139.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccC--CCcccc-------ccccccCCCeeeeecc
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYK--NPTKTK-------EDFFDEEGKRWFRTGD 72 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~--~~~~~~-------~~~~~~~g~~~~~TGD 72 (228)
+++++|+|+||+++++++ +++. +..|||+++|++++.|||+ +++.+. ..+ ..+| ||+|||
T Consensus 529 ~~~svG~p~pg~~~~i~d-~~~~-------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~-~~~g--w~~TGD 597 (718)
T PRK08043 529 KPGTVGRILPGMDARLLS-VPGI-------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGE-MERG--WYDTGD 597 (718)
T ss_pred CCCCCCCcCCCCeeEEec-CCCC-------CCceEEEEecCCccccccCCCCccccccccccccccc-ccCC--eEecCC
Confidence 468999999999999998 3432 3469999999999999998 444221 111 1356 999999
Q ss_pred EEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCC
Q psy8218 73 IGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNL 149 (228)
Q Consensus 73 l~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~ 149 (228)
+|++|++|+++|+||.+|+|++ +|++|+|.+||+.+.+++.+.+++|++.++.. .+++++......
T Consensus 598 lg~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~---------- 666 (718)
T PRK08043 598 IVRFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELT---------- 666 (718)
T ss_pred EEEEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccC----------
Confidence 9999999999999999999996 69999999999999999888888888876653 355554311100
Q ss_pred CchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 150 DSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++.+++++..++.+++|..+++++++| +|++||++|++|++++.+
T Consensus 667 ------------------~~~l~~~~~~~~l~~~~vP~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 667 ------------------REKLQQYAREHGVPELAVPRDIRYLKQLP------LLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred ------------------HHHHHHHHHhcCCCcccCCceEEEecccC------cCCCCCcCHHHHHHHHhc
Confidence 35678888734599999999999999999 999999999999998865
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=225.38 Aligned_cols=180 Identities=22% Similarity=0.315 Sum_probs=145.1
Q ss_pred CCCCccCCCCCceEE-----------EEeCCCCCccccCCCCCCceEEEe-cCccCccccCCCccccccccccCCCeeee
Q psy8218 2 STGRAGAPTTVCDIR-----------LVDWDEGNYRVCDKPFPRGEILIG-GSNISPGYYKNPTKTKEDFFDEEGKRWFR 69 (228)
Q Consensus 2 ~~~s~G~plpg~~~~-----------i~~~~~~~~~~~~~~g~~Gel~i~-gp~~~~gY~~~~~~~~~~~~~~~g~~~~~ 69 (228)
+++++|+|+||+++. ++| ++|+.+. .++..|||+++ |++++.||+++|+.+.+.| .+| ||+
T Consensus 311 ~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~--~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~--~~g--~~~ 383 (540)
T PRK13388 311 PPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLN--ADEAIGELVNTAGAGFFEGYYNNPEATAERM--RHG--MYW 383 (540)
T ss_pred CCCCCCCCCCCcEEEcCCCCccccceecc-Ccccccc--CCCcceEEEEecCCcccccccCChHHHHHHh--hcC--cee
Confidence 467999999997653 222 2233222 23568999998 9999999999999998887 368 999
Q ss_pred eccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHH
Q psy8218 70 TGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEK 146 (228)
Q Consensus 70 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~ 146 (228)
|||+|+++++|++++.||.+|+|++ +|++|+|.+||+++.+++.|.+|+|++.++.. .+++++++.+....+
T Consensus 384 TGD~~~~~~dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---- 458 (540)
T PRK13388 384 SGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---- 458 (540)
T ss_pred ccceEEEcCCCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC----
Confidence 9999999999999999999999996 79999999999999999999999999987542 467777775542100
Q ss_pred cCCCchhhHhhcCChHHHHHHHHHHHHhhhh-CCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 147 LNLDSLTFQQLCTHPEIEKQVLVELQEHGKK-SNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.+.++++. ..++++++|..+++++++| +|++||++|++|+++..+
T Consensus 459 ---------------------~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP------~t~~GKv~R~~L~~~~~~ 506 (540)
T PRK13388 459 ---------------------PDAFAAFLAAQPDLGTKAWPRYVRIAADLP------STATNKVLKRELIAQGWA 506 (540)
T ss_pred ---------------------HHHHHHHHHhhccCCcccCCcEEEEeccCC------CCCcceeeHHhHHHhccC
Confidence 2345555542 3599999999999999999 999999999999987643
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=223.61 Aligned_cols=174 Identities=28% Similarity=0.497 Sum_probs=151.9
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+++++++|+| +++++++ .|+.|||+++|++++.||++++..+...+ ..+| ||+|||+++++++|.+
T Consensus 336 ~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~--~~~tGDl~~~~~~g~~ 408 (513)
T PRK07656 336 AGTIGTAIAGVENKIVN-ELGEEVP---VGEVGELLVRGPNVMKGYYDDPEATAAAI-DADG--WLHTGDLGRLDEEGYL 408 (513)
T ss_pred CCCccccCCCcEEEEEC-CCCCCCC---CCCceEEEEEcchhhhhhcCCHHHHhhhh-ccCC--ceeccceEEEcCCeeE
Confidence 67999999999999999 6788776 55789999999999999999998887776 3477 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+++||.+|++++ +|.++++.+||+.|.++++|.+++|++.++. ..++++|++......+
T Consensus 409 ~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~----------------- 470 (513)
T PRK07656 409 YIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELT----------------- 470 (513)
T ss_pred EEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCC-----------------
Confidence 999999999997 7999999999999999999999999987654 3478888876421100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.+++.++++ ..++++++|..+++++++| +|++||++|++|++
T Consensus 471 --------~~~l~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~gK~~r~~l~~ 512 (513)
T PRK07656 471 --------EEELIAYCR-EHLAKYKVPRSIEFLDELP------KNATGKVLKRALRE 512 (513)
T ss_pred --------HHHHHHHHH-hhcccccCCCEEEEecCCC------CCCccceeHHHHhc
Confidence 356777887 8899999999999999999 99999999999975
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=212.82 Aligned_cols=162 Identities=30% Similarity=0.507 Sum_probs=139.3
Q ss_pred CccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEE
Q psy8218 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84 (228)
Q Consensus 5 s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~ 84 (228)
..|.|+|++++++.+ |||+++|+.++.||+++++.+ .+ ..+| ||+|||++++ ++|.|+|
T Consensus 193 ~~G~~~~g~~v~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~-~~~g--~~~TGDl~~~-~~g~l~i 251 (358)
T PRK07824 193 YDGVPLDGVRVRVED---------------GRIALGGPTLAKGYRNPVDPD--PF-AEPG--WFRTDDLGAL-DDGVLTV 251 (358)
T ss_pred cCceeCCCCEEEecC---------------CEEEEecCccccccCCCcccc--cc-cCCC--ceecccEEEE-eCCEEEE
Confidence 368999999999854 999999999999999988743 23 3567 9999999999 8999999
Q ss_pred eccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCCh
Q psy8218 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161 (228)
Q Consensus 85 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
.||.+|+|++ +|++|+|.+||..|.+||.|.+|+|++.++.. .++++++.......
T Consensus 252 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~-------------------- 310 (358)
T PRK07824 252 LGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAP-------------------- 310 (358)
T ss_pred EeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCc--------------------
Confidence 9999999996 79999999999999999999999999976543 47888876543211
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
..++|.++++ +.++.+++|..|++++++| +|++||++|++|+++|.+
T Consensus 311 -----~~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 311 -----TLEALRAHVA-RTLDRTAAPRELHVVDELP------RRGIGKVDRRALVRRFAG 357 (358)
T ss_pred -----CHHHHHHHHH-hhCccccCCCEEEEecCCC------CCCCccccHHHHHHHhhc
Confidence 1567888888 8899999999999999999 999999999999999864
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=222.53 Aligned_cols=178 Identities=19% Similarity=0.318 Sum_probs=150.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc--------CCCeeeeeccE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE--------EGKRWFRTGDI 73 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~--------~g~~~~~TGDl 73 (228)
+++++|+|+|+++++|++ +++..++ .|+.|||+++|+.++.|||++++.+...|.+. .+.+||+|||+
T Consensus 326 ~~~~vG~~~~~~~~~i~~-~~~~~~~---~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~ 401 (515)
T TIGR03098 326 RPDSIGKAIPNAEVLVLR-EDGSECA---PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDT 401 (515)
T ss_pred CCCCcceecCCCEEEEEC-CCCCCCC---CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccce
Confidence 467999999999999999 6777776 46789999999999999999998887665321 11248999999
Q ss_pred EEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCC
Q psy8218 74 GELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLD 150 (228)
Q Consensus 74 ~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~ 150 (228)
++++++|++++.||.+|+|+. +|++|+|.+||+++.+++.|.+++|++.++. ..+++++++......+
T Consensus 402 ~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~-------- 472 (515)
T TIGR03098 402 VRRDEEGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD-------- 472 (515)
T ss_pred EEEcCCceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC--------
Confidence 999999999999999999996 7999999999999999999999999997654 3477777754332110
Q ss_pred chhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 151 SLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.++++++++ ..++++++|..+++++++| +|.+||++|++|++
T Consensus 473 -----------------~~~l~~~l~-~~l~~~~~p~~i~~v~~iP------~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 473 -----------------RAALLAECR-ARLPNYMVPALIHVRQALP------RNANGKIDRKALAA 514 (515)
T ss_pred -----------------HHHHHHHHH-hhCccccCCCEEEEeccCC------CCCCCCCcHHHhcc
Confidence 456788887 7899999999999999999 99999999999975
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=221.16 Aligned_cols=181 Identities=25% Similarity=0.362 Sum_probs=154.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+++ .+++++ +++..++ .|+.|||+++|+ ++.+|+++++.+...+..+++ ||+|||+++++++|.
T Consensus 326 ~~~~vG~~~~g-~~~i~d-~~~~~~~---~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~--w~~TGD~g~~~~~g~ 397 (511)
T PRK13391 326 HPGTVGRAMFG-DLHILD-DDGAELP---PGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGT--WSTVGDIGYVDEDGY 397 (511)
T ss_pred cCCCcCCcccc-eEEEEC-CCCCCCC---CCCceEEEEecC-cceEEcCChhHhHHhhccCCC--EEecCCEEEECCCcc
Confidence 45799999999 699999 7787776 568999999999 889999999998887754447 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+++. +|++|++.+||+++.+|+.|.+++|++.++.. .+++++++......
T Consensus 398 l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~----------------- 459 (511)
T PRK13391 398 LYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDP----------------- 459 (511)
T ss_pred EEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCc-----------------
Confidence 9999999999995 79999999999999999999999999876553 37788877653210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.+++.++++ ..++.+++|..|++++++| +|++||++|..|++.|.+
T Consensus 460 -----~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 460 -----GPALAAELIAFCR-QRLSRQKCPRSIDFEDELP------RLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred -----ccchHHHHHHHHH-hhcccCcCCcEEEEeecCC------CCCccceeHHHHHHHhhc
Confidence 0112467888888 8899999999999999999 999999999999998864
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=219.90 Aligned_cols=183 Identities=24% Similarity=0.418 Sum_probs=157.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+ +++++++| +++++++ .|+.|||+++|++++.||+++++.+...+. ++| ||+|||+++++++|.+
T Consensus 314 ~~~~G~~~-~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~--~~~TGD~~~~~~~g~~ 385 (502)
T PRK08276 314 PGSVGKAV-LGEVRILD-EDGNELP---PGEIGTVYFEMDGYPFEYHNDPEKTAAARN-PHG--WVTVGDVGYLDEDGYL 385 (502)
T ss_pred CCCcceec-ccEEEEEC-CCCCCCc---CCCceEEEEECCCccchhcCCHHHHHHHhc-CCC--ceeecceEEEcCCcCE
Confidence 57899999 88999999 6777776 468999999999999999999999888874 457 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+++++. +|++|++.+||..+.++|+|.++++++..+.. .++++|++......
T Consensus 386 ~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~------------------ 446 (502)
T PRK08276 386 YLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADA------------------ 446 (502)
T ss_pred EEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCC------------------
Confidence 999999999996 79999999999999999999999999876643 58999998754210
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
...+.+.+.+.++ ..++.++.|..+++++++| +|++||++|++|++.|.+..+
T Consensus 447 ----~~~~~~~i~~~~~-~~l~~~~~p~~i~~~~~lP------~t~~GKi~r~~L~~~~~~~~~ 499 (502)
T PRK08276 447 ----GDALAAELIAWLR-GRLAHYKCPRSIDFEDELP------RTPTGKLYKRRLRDRYWEGRQ 499 (502)
T ss_pred ----ChhhHHHHHHHHH-hhccCCCCCcEEEEecCCC------CCcccchhHHHHHHHHHhhhh
Confidence 0112456777887 8899999999999999999 999999999999999876544
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=218.76 Aligned_cols=179 Identities=23% Similarity=0.406 Sum_probs=153.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCc-cccCCCccccccccccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-GYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~-gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G 80 (228)
+++++|.|+|++++++++ ++++.++ .|+.|||+++|++++. +|+++++.+...+ .+| ||+|||+++++++|
T Consensus 322 ~~~~~G~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g 393 (509)
T PRK12406 322 HPGTVGKAAPGAELRFVD-EDGRPLP---QGEIGEIYSRIAGNPDFTYHNKPEKRAEID--RGG--FITSGDVGYLDADG 393 (509)
T ss_pred cCCCcCccCCCcEEEEEC-CCCCCCC---CCCceEEEEECCccccccccCCchhccccc--CCC--CeEEccEEEEcCCc
Confidence 468999999999999999 6777776 5689999999999865 9999998877654 477 99999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
++++.||.+|+|++ +|++|++.+||..|.++++|.++++++.++.. .++++|++.......
T Consensus 394 ~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--------------- 457 (509)
T PRK12406 394 YLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLD--------------- 457 (509)
T ss_pred eEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCC---------------
Confidence 99999999999995 89999999999999999999999999877643 478888876532100
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.+++.++++ ..++++++|..+++++++| +|.+||++|++|++.|...
T Consensus 458 ----------~~~l~~~l~-~~l~~~~~P~~i~~~~~iP------~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 458 ----------EADIRAQLK-ARLAGYKVPKHIEIMAELP------REDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred ----------HHHHHHHHH-HhcccCCCCcEEEEeccCC------CCCccchhHHHHHHHHHhh
Confidence 456777777 7899999999999999999 9999999999999888653
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=224.57 Aligned_cols=182 Identities=24% Similarity=0.467 Sum_probs=152.0
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccc----ccccc-----------ccCCCeee
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKT----KEDFF-----------DEEGKRWF 68 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~----~~~~~-----------~~~g~~~~ 68 (228)
.++|++.+++++++++ + ++.++. .++..|||+++|++++.|||++++.+ ...|. ..+| ||
T Consensus 358 ~~~G~~~~~~~~~i~~-~-g~~~~~-~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g--~~ 432 (576)
T PRK05620 358 VSQGRFPASLEYRIVN-D-GQVMES-TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADG--WL 432 (576)
T ss_pred cccCCcCCceeEEEec-C-CccccC-CCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCC--cE
Confidence 3789999999999999 4 655542 24578999999999999999999887 32221 2356 99
Q ss_pred eeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHH
Q psy8218 69 RTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAE 145 (228)
Q Consensus 69 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~ 145 (228)
+|||+++++++|.++|.||.+|+|+. +|++|++.+||+.|.+||.|.+++|++.++.. .+++++++.++....
T Consensus 433 ~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~--- 508 (576)
T PRK05620 433 RTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPT--- 508 (576)
T ss_pred ecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcc---
Confidence 99999999999999999999999995 79999999999999999999999999987653 477888776542110
Q ss_pred HcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
....+.|+++++ ..|+++++|..|++++++| +|++||++|++|++++++
T Consensus 509 -------------------~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~P------~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 509 -------------------RETAERLRDQLR-DRLPNWMLPEYWTFVDEID------KTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred -------------------cccHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCcccCcHHHHHHHHhc
Confidence 001467888888 8899999999999999999 999999999999999986
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=222.50 Aligned_cols=179 Identities=28% Similarity=0.528 Sum_probs=153.7
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+|++.++|++ +++++++ +|+.|||+++|++++.||+++++.+...| ++| ||+|||+++++++|.+
T Consensus 377 ~~~~G~~~~~~~~~i~~-~~~~~~~---~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~g~l 448 (560)
T PRK08974 377 SGSIGLPVPSTEIKLVD-DDGNEVP---PGEPGELWVKGPQVMLGYWQRPEATDEVI--KDG--WLATGDIAVMDEEGFL 448 (560)
T ss_pred CCccccCcCCCEEEEEC-CCCCCCC---CCCceEEEEecCCcchhhcCChhhhhhhh--hcC--CcccCCEEEEcCCceE
Confidence 57899999999999999 6777776 56899999999999999999999888777 478 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+++||.+|+|++ +|.+++|.+||+.|.+++.|.+++|++.++.. .++++++.......
T Consensus 449 ~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~------------------ 509 (560)
T PRK08974 449 RIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLT------------------ 509 (560)
T ss_pred EEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCC------------------
Confidence 999999999997 69999999999999999999999999876543 35566554332110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.+++.+++. ..++.++.|..+++++++| +|++||++|+.|+++..++++
T Consensus 510 --------~~~l~~~l~-~~l~~~~~P~~~~~~~~lP------~t~~GK~~r~~l~~~~~~~~~ 558 (560)
T PRK08974 510 --------EEELITHCR-RHLTGYKVPKLVEFRDELP------KSNVGKILRRELRDEARAKVD 558 (560)
T ss_pred --------HHHHHHHHH-hhcccccCCcEEEEhhhCC------CCCCCcEeHHHHHHHHHhhhc
Confidence 346777777 7889999999999999999 999999999999998877654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=262.34 Aligned_cols=185 Identities=27% Similarity=0.381 Sum_probs=157.6
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc----CCCeeeeeccEEEEeeC
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE----EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~----~g~~~~~TGDl~~~~~~ 79 (228)
.++|+|+++++++|+| +.++++| +|.+|||+|+|+++++||+++|+.|++.|... +|.+||+|||+|++++|
T Consensus 828 ~~iG~p~~~~~~~i~d-~~~~~vp---~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~d 903 (3956)
T PRK12467 828 VPIGQPLANLGLYILD-HYLNPVP---VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRAD 903 (3956)
T ss_pred CcccCCcCCCEEEEEC-CCCCCCC---CCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCC
Confidence 5799999999999999 6778777 56899999999999999999999999988642 46789999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|.|+|+||.|++||+ +|++|+|.+||..|.++|+|.+|+|++.++. ..++|++++......
T Consensus 904 G~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~~---------------- 966 (3956)
T PRK12467 904 GVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADG---------------- 966 (3956)
T ss_pred CcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccccc----------------
Confidence 999999999999998 6999999999999999999999999985433 368999986532100
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.......+.|+++++ ..++.|++|..+++++++| +|++||++|++|.+.+..
T Consensus 967 ----~~~~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~~~ 1018 (3956)
T PRK12467 967 ----AEHQATRDELKAQLR-QVLPDYMVPAHLLLLDSLP------LTPNGKLDRKALPKPDAS 1018 (3956)
T ss_pred ----cccccCHHHHHHHHH-hhCchhcCCceEeeecccC------CCCCCCcCHhhcCCcccc
Confidence 000111467888888 8899999999999999999 999999999999876543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=216.66 Aligned_cols=164 Identities=26% Similarity=0.474 Sum_probs=144.2
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
.++|+|+++++++|.+ |||+++|++++.||+++++.+... ..+| ||+|||+|++| +|+++
T Consensus 289 ~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~--~~~~--~~~TGD~~~~~-~g~l~ 348 (458)
T PRK09029 289 AGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLV--NDEG--WFATRDRGEWQ-NGELT 348 (458)
T ss_pred CCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCccccccc--cCCC--ccCCCCcEEEe-CCEEE
Confidence 4799999999999987 899999999999999998877543 2466 99999999999 99999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
|.||.+|+|++ +|++|+|.+||+.|.++|.|.+++|++.++.. .++++|++.....
T Consensus 349 ~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~-------------------- 407 (458)
T PRK09029 349 ILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAA-------------------- 407 (458)
T ss_pred Eecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccC--------------------
Confidence 99999999996 79999999999999999999999999987663 4888887663210
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.++|+++++ ..++++++|..+++++++| +|.+||++|+.|++++.+..
T Consensus 408 -------~~~l~~~~~-~~l~~~~~P~~~~~~~~~p------~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 408 -------VVNLAEWLQ-DKLARFQQPVAYYLLPPEL------KNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred -------HHHHHHHHH-hhchhccCCeEEEEecccc------cCcCCCcCHHHHHHHHHhcc
Confidence 467888888 8899999999999999999 89999999999999987643
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=225.43 Aligned_cols=190 Identities=22% Similarity=0.200 Sum_probs=150.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecC--ccCccccCCCccccccccc---cCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTKEDFFD---EEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp--~~~~gY~~~~~~~~~~~~~---~~g~~~~~TGDl~~~ 76 (228)
+++++|.|++|++++|+| ++|++++.+.+ .+|||++.++ +...+|+++. .+...|.. ..|.+||+|||++++
T Consensus 523 ~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~ 599 (728)
T PLN03052 523 AFAAFSTPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFER 599 (728)
T ss_pred CCCccccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEE
Confidence 467899999999999999 88888874311 3699999865 3345677764 23222311 135569999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHh-cCCCcceEEEEecCCC----CeEEEEEEeC--chhHHHHHHHcCC
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELK-TCPVIENICVYGDSRK----DYTVALVVPN--PSRLKEIAEKLNL 149 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~~~v~~a~v~~~~~~----~~~~a~v~~~--~~~~~~~~~~~~~ 149 (228)
|++|+++|+||.||+|++ +|++|++.+||+++. .||.|.+++|++.++. ..++++|+++ +...
T Consensus 600 d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~--------- 669 (728)
T PLN03052 600 TSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN--------- 669 (728)
T ss_pred CCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC---------
Confidence 999999999999999996 799999999999995 7999999999998754 3589999986 2210
Q ss_pred CchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 150 DSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
...+++.+.+++.++ ..++++++|..|++++++| +|.+||++|+.|++++.+...
T Consensus 670 ------------~~~~~L~~~i~~~i~-~~l~~~~~p~~i~~v~~lP------~T~sGKi~Rr~Lr~~~~~~~~ 724 (728)
T PLN03052 670 ------------PDLNELKKIFNSAIQ-KKLNPLFKVSAVVIVPSFP------RTASNKVMRRVLRQQLAQELS 724 (728)
T ss_pred ------------CCHHHHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCchHHHHHHHHHHHHhhhh
Confidence 001234677888887 8899999999999999999 999999999999999977543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=259.89 Aligned_cols=180 Identities=24% Similarity=0.381 Sum_probs=155.7
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc----CCCeeeeeccEEEEeeC
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE----EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~----~g~~~~~TGDl~~~~~~ 79 (228)
.++|+|+++++++|+| +.++.+| .|.+|||+|+|+++++||+++|+.|++.|... .|.+||+|||++++++|
T Consensus 4040 ~~iG~p~~~~~~~v~d-~~~~~~p---~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~d 4115 (4334)
T PRK05691 4040 LPIGSPTDNNRLYLLD-EALELVP---LGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSD 4115 (4334)
T ss_pred CCCCCccCCCEEEEEC-CCCCCCC---CCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCC
Confidence 4699999999999999 7888887 56899999999999999999999999998642 35789999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC--CCeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR--KDYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|.|+|+||.|++||+ +|++|.+.+||..|.++|+|.+|+|+...+ ...++|++++......
T Consensus 4116 G~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~---------------- 4178 (4334)
T PRK05691 4116 GVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLA---------------- 4178 (4334)
T ss_pred CcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCccccc----------------
Confidence 999999999999998 699999999999999999999998875432 3468999987654211
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.....+.|+.+++ ..||.|++|..++.++++| +|++|||+|++|.+.
T Consensus 4179 ------~~~~~~~l~~~l~-~~Lp~ymvP~~~~~~~~lP------~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4179 ------QGALLERIKQRLR-AELPDYMVPLHWLWLDRLP------LNANGKLDRKALPAL 4225 (4334)
T ss_pred ------chHHHHHHHHHHH-hhCChhhcCcceeecccCC------CCCCCcccHhhcCCC
Confidence 0112467888888 8999999999999999999 999999999999764
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=260.48 Aligned_cols=178 Identities=26% Similarity=0.363 Sum_probs=155.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc----cCCCeeeeeccEEEEee
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD----EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~----~~g~~~~~TGDl~~~~~ 78 (228)
.+++|+|++++.++|+| +.++.+| .|.+|||+|+|+++++||+++|+.|.+.|.. .+|.+||+|||+|++++
T Consensus 1442 ~~~iG~p~~~~~~~i~d-~~~~~vp---~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691 1442 RSPIGRPLGNVLCRVLD-AELNLLP---PGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred CCcccceeCCCEEEEEC-CCCCCCC---CCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence 46899999999999999 7788887 5689999999999999999999999998864 23568999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
+|.++|+||.|++||+ +|++|+|.+||.+|.++|.|.+|+|++..+. ..+++++++.......
T Consensus 1518 dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~-------------- 1582 (4334)
T PRK05691 1518 DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAE-------------- 1582 (4334)
T ss_pred CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCC--------------
Confidence 9999999999999997 6999999999999999999999999875533 4588888876542110
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ ..+|.|++|..++.++++| +|++||++|++|.+.
T Consensus 1583 -----------~~~l~~~l~-~~Lp~y~vP~~~~~~~~lP------~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1583 -----------AERLKAALA-AELPEYMVPAQLIRLDQMP------LGPSGKLDRRALPEP 1625 (4334)
T ss_pred -----------HHHHHHHHH-HhCccccCCcEEEEccccC------CCCCCCcChhhcCcc
Confidence 357888888 8899999999999999999 999999999999653
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=217.21 Aligned_cols=180 Identities=29% Similarity=0.508 Sum_probs=156.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..+++|.|+|++.++|+| +++++++.. +|..|||+++|++++.+|+++++.+...|. +| ||+|||+++++++|+
T Consensus 337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~-~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~--~~--~~~tGD~~~~~~~g~ 410 (521)
T PRK06187 337 KRRSAGRPLPGVEARIVD-DDGDELPPD-GGEVGEIIVRGPWLMQGYWNRPEATAETID--GG--WLHTGDVGYIDEDGY 410 (521)
T ss_pred cCCccccccCCeEEEEEC-CCCCCCCCC-CCCeeEEEEECcchhhhhcCCHHHHHHHhh--CC--ceeccceEEEcCCCC
Confidence 457899999999999999 667777642 378999999999999999999988887773 67 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.++.+++ +|.++++.+||+++.++++|.+++|++.++. ..+++++++.+....+
T Consensus 411 ~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 473 (521)
T PRK06187 411 LYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD---------------- 473 (521)
T ss_pred EEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC----------------
Confidence 9999999999997 7999999999999999999999999987654 3588888876542110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.+.++++ ..++++++|..+++++++| +|++||++|.+|+++|++
T Consensus 474 ---------~~~l~~~l~-~~l~~~~~p~~i~~v~~~P------~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 474 ---------AKELRAFLR-GRLAKFKLPKRIAFVDELP------RTSVGKILKRVLREQYAE 519 (521)
T ss_pred ---------HHHHHHHHH-HhccCCCCceEEEEccCCC------CCCCCCeeHHHHHHHHhc
Confidence 356777777 7799999999999999999 999999999999999975
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=217.66 Aligned_cols=183 Identities=27% Similarity=0.415 Sum_probs=153.0
Q ss_pred CCccCCCCCce-EEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPTTVCD-IRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~plpg~~-~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|.+++|+. ++|++++++++++.+ .++.|||+++|++++.|||++++.+.+.|. +| ||+|||++++|++|++
T Consensus 372 ~~~g~~~~g~~~~~i~d~~~~~~~~~~-g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~--~g--~~~TGDl~~~~~~g~l 446 (567)
T PLN02479 372 ARQGVRYIGLEGLDVVDTKTMKPVPAD-GKTMGEIVMRGNMVMKGYLKNPKANEEAFA--NG--WFHSGDLGVKHPDGYI 446 (567)
T ss_pred cccCCCcCCcCceeEEcCCCCcccCCC-CCCceEEEEeccchhhhhhcCcccccchhc--CC--ceecceeEEEcCCccE
Confidence 35788888886 889987777777642 125799999999999999999999999884 78 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.+|+|++ +|++|+|.+||..|.+||.|.+++|++.++.. .+++++++.......
T Consensus 447 ~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----------------- 508 (567)
T PLN02479 447 EIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS----------------- 508 (567)
T ss_pred EEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc-----------------
Confidence 999999999996 79999999999999999999999999987543 588888887642100
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
....+.++|.++++ ..+++++.|..+++ .++| +|++||++|++|++.+..
T Consensus 509 ---~~~~~~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 509 ---DEAALAEDIMKFCR-ERLPAYWVPKSVVF-GPLP------KTATGKIQKHVLRAKAKE 558 (567)
T ss_pred ---chhhhHHHHHHHHH-hhcccccCCceEEe-ccCC------CCCccCeeHHHHHHHHHh
Confidence 01122567888888 88999999999887 6799 999999999999987655
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=220.24 Aligned_cols=175 Identities=23% Similarity=0.357 Sum_probs=141.0
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
+++|.|+|+++++|+| ++++.++ .|+.|||+++|++++.|||++ ..+...+ ..+| ||+|||+|++ ++|+|+
T Consensus 385 ~~vG~~~p~~~v~i~d-~~~~~~~---~g~~Gel~i~g~~~~~gY~~~-~~~~~~~-~~dg--w~~TGDlg~~-~~G~l~ 455 (579)
T PRK09192 385 VNCGKALPGHEIEIRN-EAGMPLP---ERVVGHICVRGPSLMSGYFRD-EESQDVL-AADG--WLDTGDLGYL-LDGYLY 455 (579)
T ss_pred eecCCcCCCcEEEEEC-CCCCCCC---CCCEEEEEecCCchhhhhcCC-ccccccc-cCCc--eeeccceeeE-ECCEEE
Confidence 5799999999999999 6777776 457999999999999999999 5565555 3578 9999999999 899999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcc--eEEEEecCCCC--eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIE--NICVYGDSRKD--YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~--~a~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|+||.+|+|++ +|++|+|.+||++|++||.|. +|+|++.++.. .+++++++.......
T Consensus 456 ~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~----------------- 517 (579)
T PRK09192 456 ITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEER----------------- 517 (579)
T ss_pred EEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCChHH-----------------
Confidence 99999999997 799999999999999999998 88888876542 477777765432111
Q ss_pred ChHHHHHHHHHHHHhhhhCCC-CCCcceeEEEEec--cCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNL-ERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l-~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.|.+.++ ..+ +.++.|..++++. ++| +|++||++|++|+++|.+
T Consensus 518 --------~~~l~~~~~-~~l~~~~~~~~~i~~~~~~~lP------~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 518 --------RGQLIHALA-ALVRSEFGVEAAVELVPPHSLP------RTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred --------HHHHHHHHH-HHHHHHhCCCceEEEeCCCCcC------CCCCcchhHHHHHHHHHc
Confidence 233444443 222 3466777777775 799 999999999999999876
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=215.57 Aligned_cols=176 Identities=23% Similarity=0.427 Sum_probs=148.3
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
+++|+|++|++++|+| +++..++.. .+..|||+++|++++.|||++. .. ..+.+| ||+|||+++++++|+++
T Consensus 356 ~~~G~~~~g~~i~v~d-~~~~~~~~~-~~~~Gel~i~g~~~~~gy~~~~---~~-~~~~~~--~~~TGDl~~~~~~g~~~ 427 (542)
T PRK06018 356 QKQGYPPFGVEMKITD-DAGKELPWD-GKTFGRLKVRGPAVAAAYYRVD---GE-ILDDDG--FFDTGDVATIDAYGYMR 427 (542)
T ss_pred ccCCCCCCCcEEEEEC-CCCCCCCCC-CCceeEEEEecCCcchhhhcCc---cc-EecCCc--EEEcCCEEEEcCCccEE
Confidence 5789999999999999 677777642 2257999999999999999842 22 223567 99999999999999999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTH 160 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (228)
+.||.+|+|+. +|++|++.+||..+.++|.|.+++|++.++.. .+.++|++.++....
T Consensus 428 ~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------------------ 488 (542)
T PRK06018 428 ITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETAT------------------ 488 (542)
T ss_pred EEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCC------------------
Confidence 99999999995 89999999999999999999999999977643 477888776542100
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 161 PEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+.+.++++ ..++.+++|..+++++++| +|++||++|++|+++|.+
T Consensus 489 -------~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 489 -------REEILKYMD-GKIAKWWMPDDVAFVDAIP------HTATGKILKTALREQFKD 534 (542)
T ss_pred -------HHHHHHHHH-hhCccccCCcEEEEeccCC------CCCcchhhHHHHHHHHhc
Confidence 356778887 7899999999999999999 999999999999998865
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=231.47 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=144.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+||+++++.+ ..+ .++.|||+++|++++.||++++....... ..+| ||+|||++++|+||+
T Consensus 957 ~~~~vG~p~~g~~~~~~~-~~~-------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~~g--~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814 957 KAGTVGRLLPGIEYRLEP-VPG-------IDEGGRLFVRGPNVMLGYLRAENPGVLEP-PADG--WYDTGDIVTIDEEGF 1025 (1140)
T ss_pred CCCcCCccCCCCeEEEee-cCC-------CCCceEEEEeCCCcchhhcCCCCCCcccc-CCCC--eEecCCEEEECCCCe
Confidence 467999999999999987 332 24679999999999999998765332111 2467 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.||+|++ +|++|+|.+||+.+.+|+.+.+++|++.++.. .+++++......
T Consensus 1026 l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~------------------- 1085 (1140)
T PRK06814 1026 ITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDAT------------------- 1085 (1140)
T ss_pred EEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcC-------------------
Confidence 9999999999996 79999999999999999999999999877653 355554321111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.+++.+++++..++++++|..+++++++| +|++||++|++|++++++...
T Consensus 1086 ---------~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814 1086 ---------RAAFLAHAKAAGASELMVPAEIITIDEIP------LLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred ---------HHHHHHHHHHcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHhhc
Confidence 35667777645699999999999999999 999999999999999887654
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=216.91 Aligned_cols=178 Identities=29% Similarity=0.436 Sum_probs=153.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|++|+.++++| +++.+++ +|+.|||+++|++++.||+++++.++..| .+| ||+|||+++++++|.
T Consensus 328 ~~~~~G~~~~g~~v~i~d-~~~~~~~---~g~~Gel~i~~~~~~~gY~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~ 399 (508)
T TIGR02262 328 RYGTSGKPVPGYRLRLVG-DGGQDVA---AGEPGELLISGPSSATMYWNNRAKTRDTF--QGE--WTRSGDKYVRNDDGS 399 (508)
T ss_pred CCCCcCCCCCCcEEEEEC-CCCCCCC---CCCeeEEEEecCccccccCCCHHHhHhhh--hcC--ceeccceEEEcCCcc
Confidence 357899999999999999 8888887 56899999999999999999999988877 367 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|.||.+|+|++ +|++|++.+||+.+.++++|.++++++.++. ..+.+++++......
T Consensus 400 ~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 461 (508)
T TIGR02262 400 YTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDI----------------- 461 (508)
T ss_pred EEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCcc-----------------
Confidence 9999999999997 6999999999999999999999999986543 247788887654210
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
...+.+++.+.++ ..++++++|..+++++++| +|++||++|++|+++
T Consensus 462 -----~~~~~~~i~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 462 -----DTALETELKEHVK-DRLAPYKYPRWIVFVDDLP------KTATGKIQRFKLREG 508 (508)
T ss_pred -----ccccHHHHHHHHH-HhcccCCCCceEEEecCCC------CCCCCcEehhhccCC
Confidence 0112567888888 7799999999999999999 999999999998764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=230.59 Aligned_cols=172 Identities=21% Similarity=0.252 Sum_probs=137.0
Q ss_pred CCCCccCCCCCc-eEEEE--eC--------CCC--CccccCCCCCCceEEEecCccCccccCCCcccc--ccccccCCCe
Q psy8218 2 STGRAGAPTTVC-DIRLV--DW--------DEG--NYRVCDKPFPRGEILIGGSNISPGYYKNPTKTK--EDFFDEEGKR 66 (228)
Q Consensus 2 ~~~s~G~plpg~-~~~i~--~~--------~~~--~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~--~~~~~~~g~~ 66 (228)
+++|+|+|+||+ +++|. ++ ++| +.+ ++|++|||+++|+.. + +|+.+. ..|.+.+|
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~---~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dg-- 836 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRA---EVNEVGVLLARARGP----I-DPTASVKRGVFAPADT-- 836 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEc---CCCCceEEEEecCCC----C-ChhhhhHhcccccCCE--
Confidence 468999999998 67764 21 223 223 367899999999853 3 344332 22422355
Q ss_pred eeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC--eEEEEEEeCchhHHHHH
Q psy8218 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD--YTVALVVPNPSRLKEIA 144 (228)
Q Consensus 67 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~--~~~a~v~~~~~~~~~~~ 144 (228)
||+|||+|++|+||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++++....+
T Consensus 837 w~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~-- 913 (994)
T PRK07868 837 WISTEYLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAIT-- 913 (994)
T ss_pred EEeccceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCC--
Confidence 9999999999999999999999999996 68899999999999999999999999987653 588999887542100
Q ss_pred HHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 145 EKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ . ++.|++|+.|++++++| +|++||++|++|++.
T Consensus 914 -----------------------~~~L~~~l~-~-l~~y~vP~~i~~v~~lP------~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 914 -----------------------AADLTEALA-S-LPVGLGPDIVHVVPEIP------LSATYRPTVSALRAA 955 (994)
T ss_pred -----------------------HHHHHHHHH-h-CCCCcCCeEEEEeCCCC------CCccccEehHHHHhc
Confidence 457888886 4 89999999999999999 999999999999865
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=214.19 Aligned_cols=170 Identities=26% Similarity=0.420 Sum_probs=145.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|.|+|+++++|+| +++++++ +|+.|||+++|+.++.+|++++.. .+ .+| ||+|||++++|++|+
T Consensus 343 ~~~~~G~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~~Y~~~~~~---~~--~~g--~~~TGDl~~~d~~G~ 411 (516)
T PRK13383 343 APETVGKPVAGCPVRILD-RNNRPVG---PRVTGRIFVGGELAGTRYTDGGGK---AV--VDG--MTSTGDMGYLDNAGR 411 (516)
T ss_pred CCCcccCCCCCcEEEEEC-CCCCCCC---CCCceEEEEecCcccccccCCchh---he--ecC--ceecceeEEEcCCcc
Confidence 357899999999999999 6777766 568999999999999999987642 22 368 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|++ +|++|+|.+||+.|.+++.|.++++++.++. ..+.++|++.......
T Consensus 412 l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~---------------- 474 (516)
T PRK13383 412 LFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD---------------- 474 (516)
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC----------------
Confidence 9999999999996 8999999999999999999999999997654 3478888876532100
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.+++.++++ ..++.++.|..+++++++| +|++||++|++|+
T Consensus 475 ---------~~~l~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~gKi~r~~L~ 515 (516)
T PRK13383 475 ---------AAQLRDYLK-DRVSRFEQPRDINIVSSIP------RNPTGKVLRKELP 515 (516)
T ss_pred ---------HHHHHHHHH-HhcccCCCCcEEEEeCCCC------CCCCCcCcHHHhC
Confidence 356778887 7789999999999999999 9999999999874
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-28 Score=215.57 Aligned_cols=174 Identities=29% Similarity=0.422 Sum_probs=148.3
Q ss_pred CCCccCCCCCceEEEEeC-CCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 3 TGRAGAPTTVCDIRLVDW-DEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~-~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
++++|.|++++.+++.+. ++++.++ +|+.|||+++|++++.||+++++.+.+.|. ++ ||+|||+++++++|+
T Consensus 364 ~~~~G~~~~~~~~~v~~~d~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~TGD~~~~~~~g~ 436 (541)
T TIGR03205 364 PGSIGLMLPGIELDVVSLDDPTKVLP---PGEVGELRIRGPNVTRGYWNRPEESAEAFV--GD--RFLTGDIGYMDTDGY 436 (541)
T ss_pred CCCcceeccCceeEEEecCCCCccCC---CCCeeEEEEecCCccccccCChhhhHhhhc--cC--CcccCceEEEcCCce
Confidence 578999999999988653 4556665 568999999999999999999999888774 67 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+||.+|+|++ +|++|+|.+||..+.+++.|.+++|++.++. ..+++++++...... .+
T Consensus 437 l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------~~------ 500 (541)
T TIGR03205 437 FFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP---------FS------ 500 (541)
T ss_pred EEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc---------CC------
Confidence 9999999999995 7999999999999999999999999987654 347888887654210 00
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.+.+.++++ ..++++++|..|++++++| +|++||++|++|+
T Consensus 501 ---------~~~l~~~~~-~~l~~~~~P~~i~~~~~iP------~t~~gK~~r~~l~ 541 (541)
T TIGR03205 501 ---------LDELRAFLA-GKLGKHELPVAVEFVDELP------RTPVGKLSRHELR 541 (541)
T ss_pred ---------HHHHHHHHH-hhcccccCCcEEEEeccCC------CCcccceeHhhcC
Confidence 356777887 7899999999999999999 9999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-28 Score=217.41 Aligned_cols=184 Identities=26% Similarity=0.375 Sum_probs=141.1
Q ss_pred CCCccCCCC----CceEEEEeCCCCCcc-------ccCCCCCCceEE--EecCccCccccCCCccccccccc---cCCCe
Q psy8218 3 TGRAGAPTT----VCDIRLVDWDEGNYR-------VCDKPFPRGEIL--IGGSNISPGYYKNPTKTKEDFFD---EEGKR 66 (228)
Q Consensus 3 ~~s~G~plp----g~~~~i~~~~~~~~~-------~~~~~g~~Gel~--i~gp~~~~gY~~~~~~~~~~~~~---~~g~~ 66 (228)
++++|++.+ ++.+...+++.+.++ ...++|+.|||+ +.|++++.|| ++++.+...|.. .++.+
T Consensus 361 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~ 439 (600)
T PRK08279 361 DGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDA 439 (600)
T ss_pred CcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCc
Confidence 567887776 444433332222221 112367899998 7799999999 888888776532 12334
Q ss_pred eeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC----CeEEEEEEeCchhHHH
Q psy8218 67 WFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK----DYTVALVVPNPSRLKE 142 (228)
Q Consensus 67 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~----~~~~a~v~~~~~~~~~ 142 (228)
||+|||+|+++++|+|++.||.+|+|++ +|++|+|.+||+.+.++|+|.+|+|++.++. ...+++++.......+
T Consensus 440 ~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~ 518 (600)
T PRK08279 440 WFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFD 518 (600)
T ss_pred eEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCC
Confidence 9999999999999999999999999997 7999999999999999999999999986532 2344444444221000
Q ss_pred HHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 143 IAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++.++++ ..|+.|++|..+++++++| +|++||++|.+|++++.+
T Consensus 519 -------------------------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 564 (600)
T PRK08279 519 -------------------------LAALAAHLY-ERLPAYAVPLFVRLVPELE------TTGTFKYRKVDLRKEGFD 564 (600)
T ss_pred -------------------------HHHHHHHHH-hhCccccCCeEEEeecCCC------CCcchhhhHHHHhhcCCC
Confidence 467888898 8899999999999999999 999999999999988754
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=211.78 Aligned_cols=179 Identities=30% Similarity=0.423 Sum_probs=149.4
Q ss_pred CCccCCCC-CceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPTT-VCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~plp-g~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|.+++ +..++++|++++.+++.. .+..|||+++|++++.||+++++.+...|. +| ||+|||++++|++|.+
T Consensus 358 ~~~g~~~~~~~~~~i~d~~~~~~~~~~-g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~--~g--~~~TGDl~~~d~dg~l 432 (545)
T PRK08162 358 ARQGVRYPLQEGVTVLDPDTMQPVPAD-GETIGEIMFRGNIVMKGYLKNPKATEEAFA--GG--WFHTGDLAVLHPDGYI 432 (545)
T ss_pred CCCCcccCCcceEEEEcCCCCcccCCC-CCceeEEEEecCcchhhhcCChhhhHHHhh--CC--CcccCceEEEcCCccE
Confidence 46677765 346788886677777632 124699999999999999999999988884 67 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.+|+++. +|++|+|.+||..|.+++.|.+++|++.++. ..+++++++.......
T Consensus 433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~----------------- 494 (545)
T PRK08162 433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT----------------- 494 (545)
T ss_pred EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC-----------------
Confidence 999999999995 7999999999999999999999999987654 3588888877542110
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++++++++ ..++++++|..+++ .++| +|++||++|+.|++++...
T Consensus 495 --------~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gK~~r~~l~~~~~~l 540 (545)
T PRK08162 495 --------EEEIIAHCR-EHLAGFKVPKAVVF-GELP------KTSTGKIQKFVLREQAKSL 540 (545)
T ss_pred --------HHHHHHHHH-HhcccccCCcEEEe-cccC------CCCCcCCcHHHHHHHHhhh
Confidence 457888888 78999999999875 5799 9999999999999987664
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=210.87 Aligned_cols=182 Identities=23% Similarity=0.320 Sum_probs=136.3
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc----------cCCCeeeeeccEEE
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD----------EEGKRWFRTGDIGE 75 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~----------~~g~~~~~TGDl~~ 75 (228)
+|.|. +++++++|++++++++ +|+.|||+++||+++.||+++|+.+.+.|.. .+| ||+|||+|+
T Consensus 373 ~g~p~-~~~~~ivd~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~--w~~TGDl~~ 446 (578)
T PRK05850 373 YGSPR-SPTVRIVDPDTCIECP---AGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGP--WLRTGDLGF 446 (578)
T ss_pred ccCCC-CCEEEEEcCCCCcCCC---CCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCC--eeeccceee
Confidence 45554 5799999977777776 5689999999999999999999999988742 235 999999999
Q ss_pred EeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 76 LHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 76 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
++ +|+|+|+||.+|+|++ +|++|+|.+||.+|.+|+.+. +++++.++. ..++|+|+++.....+ ..
T Consensus 447 ~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~~~~--------~~- 514 (578)
T PRK05850 447 IS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRGDSD--------EE- 514 (578)
T ss_pred EE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEeccccCcc--------hh-
Confidence 97 9999999999999996 799999999999999999854 666766654 3588888887542100 00
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEec--cCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.......+.+++.+.+. .. ....|..+++++ .+| +|++||++|++|+++|++
T Consensus 515 ------~~~~~~~l~~~v~~~l~-~~--~~~~~~~~~~~~~~~iP------~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 515 ------AMDRLRTVKREVTSAIS-KS--HGLSVADLVLVAPGSIP------ITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred ------hhhhHHHHHHHHHHHHH-HH--hCCCceEEEEeCCCCcC------CCCCchHHHHHHHHHHHc
Confidence 00012233444444443 11 123466666665 789 999999999999999876
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=207.77 Aligned_cols=175 Identities=29% Similarity=0.355 Sum_probs=148.1
Q ss_pred CCCCCceEEEEeCCCCCccccCCCCCC--ceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEe
Q psy8218 8 APTTVCDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRII 85 (228)
Q Consensus 8 ~plpg~~~~i~~~~~~~~~~~~~~g~~--Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~ 85 (228)
.+.++..+++++ +++++++. |.. |+|+ +++.++.||+++++.+.+.|...+|.+||+|||++++|++|++++.
T Consensus 353 ~~~~~~~~~i~~-~~~~~~~~---g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~ 427 (533)
T PRK07798 353 RFTIGPRTVVLD-EDGNPVEP---GSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLL 427 (533)
T ss_pred ccCCCceEEEEC-CCCCCCCC---CCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEE
Confidence 788999999999 67777764 444 6555 5678999999999999988865566679999999999999999999
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||.+++++. +|++|++.+||+++.+++.|.+++|++.++. ..+.+++++.+....+
T Consensus 428 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-------------------- 486 (533)
T PRK07798 428 GRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPD-------------------- 486 (533)
T ss_pred ccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCC--------------------
Confidence 999999995 7999999999999999999999999987654 3478888876532110
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|.++++ +.++.+++|..+++++++| +|++||++|++|+++..+
T Consensus 487 -----~~~l~~~l~-~~l~~~~~P~~i~~~~~iP------~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 487 -----LAELRAHCR-SSLAGYKVPRAIWFVDEVQ------RSPAGKADYRWAKEQAAE 532 (533)
T ss_pred -----HHHHHHHHh-hhcccCCCCeEEEEcccCC------CCCcchhhHHHHhhhhcc
Confidence 467888887 7899999999999999999 999999999999998754
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=198.97 Aligned_cols=162 Identities=27% Similarity=0.428 Sum_probs=137.3
Q ss_pred CccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEE
Q psy8218 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRI 84 (228)
Q Consensus 5 s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~ 84 (228)
++|.|++++++++.. +.. ++.|||+++|+.++.||+++++.+...+ .+| ||+|||+++++++|.+++
T Consensus 272 ~~G~~~~~~~~~i~~-~~~--------~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~~~~ 338 (436)
T TIGR01923 272 DVGRPLAGREIKIKV-DNK--------EGHGEIMVKGANLMKGYLYQGELTPAFE--QQG--WFNTGDIGELDGEGFLYV 338 (436)
T ss_pred CCCccCCCcEEEEEe-CCC--------CCceEEEEECCccchhhCCChhhhhhhh--cCC--CeeccceEEEcCCCCEEE
Confidence 499999999999944 222 1479999999999999999877765544 367 999999999999999999
Q ss_pred eccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCCh
Q psy8218 85 IDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHP 161 (228)
Q Consensus 85 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (228)
.||.+|+++. +|++|++.+||+++.+++.|.++++++.++. ..+.+++++.....
T Consensus 339 ~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------------------- 396 (436)
T TIGR01923 339 LGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDIS--------------------- 396 (436)
T ss_pred eccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCC---------------------
Confidence 9999999996 7999999999999999999999999987654 34778887765311
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHH
Q psy8218 162 EIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDI 214 (228)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l 214 (228)
.+.+.++++ ..++.+++|..+++++++| +|++||++|++|
T Consensus 397 ------~~~l~~~l~-~~l~~~~~p~~i~~~~~iP------~t~~GK~~r~~L 436 (436)
T TIGR01923 397 ------QAKLIAYLT-EKLAKYKVPIAFEKLDELP------YNASGKILRNQL 436 (436)
T ss_pred ------HHHHHHHHH-HhhhCCCCCeEEEEecCCC------CCCCCceecccC
Confidence 356777777 7889999999999999999 999999999865
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=203.21 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=133.4
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|+|+|++++++++ ++++.++ +|+.|||+++|+.++.||++++...... ..+| ||+|||+++++++|++
T Consensus 359 ~~~~G~~~~g~~~~i~~-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~--~~~g--~~~TGDl~~~~~~g~l 430 (545)
T PRK07768 359 LATLGPPLPGLEVRVVD-EDGQVLP---PRGVGVIELRGESVTPGYLTMDGFIPAQ--DADG--WLDTGDLGYLTEEGEV 430 (545)
T ss_pred EEeccCCCCCCEEEEEC-CCCCCCC---CCCEEEEEEccCcccccccCCCCCcccc--cCCC--eeeccceEEEecCCEE
Confidence 46899999999999999 7777776 5689999999999999999865443322 2467 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecC--CC--C-eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDS--RK--D-YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~--~~--~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+++||.+|+|++ +|++|++.+||+.+.++|.|.+++|++.. +. . ..++++.+......
T Consensus 431 ~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~---------------- 493 (545)
T PRK07768 431 VVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDP---------------- 493 (545)
T ss_pred EEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccH----------------
Confidence 999999999997 79999999999999999999997776532 22 1 24444443322100
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEec--cCCCCCCCccCccccccHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCS--EVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.....+.+.+.+.+. ..+. ..|..+.+++ .+| +|++||++|+.|+++|.
T Consensus 494 ----~~~~~l~~~~~~~l~-~~~~--~~p~~v~~v~~~~lP------~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 494 ----AEVRRIRHQVAHEVV-AEVG--VRPRNVVVLGPGSIP------KTPSGKLRRANAAELVT 544 (545)
T ss_pred ----HHHHHHHHHHHHHHH-HHhC--CCccEEEEeCCCcCC------CCCchhHHHHHHHHhcC
Confidence 001112333333332 1111 4678888886 799 99999999999999874
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=212.81 Aligned_cols=193 Identities=19% Similarity=0.322 Sum_probs=155.7
Q ss_pred cCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEec
Q psy8218 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIID 86 (228)
Q Consensus 7 G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~G 86 (228)
|.|+||++++|.+.+.... .+..|||+++ |+++|+.|.+.+ +| |+ +||+|+|+|
T Consensus 803 G~PlpgvEvKI~~~~E~~~-----~~~~GEIlvr-------~~kdpe~T~e~~---~g--W~---------~dG~L~Iid 856 (1452)
T PTZ00297 803 GTPAPSLQVDLEPFDEPSD-----GAGIGQLVLA-------KKGEPRRTLPIA---AQ--WK---------RDRTLRLLG 856 (1452)
T ss_pred CeecCceEEEEcccccccC-----CCCCCeEEEE-------ECCChHHHHHhh---Cc--Cc---------cCCeEEEEe
Confidence 9999999999987322111 1136999995 468999998743 56 75 589999999
Q ss_pred cCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHH-HHHHHcCCCch-------hhHhhc
Q psy8218 87 RKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLK-EIAEKLNLDSL-------TFQQLC 158 (228)
Q Consensus 87 R~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~~~-------~~~~~~ 158 (228)
|++|.|++++|++|.|+.||..+.++|.|.+++|+|.+. ..++|+|+|+.+... +|....++... +..+++
T Consensus 857 RkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~ 935 (1452)
T PTZ00297 857 PPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELV 935 (1452)
T ss_pred ccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHH
Confidence 999999999999999999999999999999999999874 459999999999998 99999887531 344454
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
+++ .+.+.+.++...+..++..+++++.++++++.++.++|++|+++|++|+.+.+.|++.|++||++
T Consensus 936 ~~~--~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297 936 AYA--SSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred HhH--HHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcc
Confidence 322 22333444333223457889999999999999999999999999999999999999999999974
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=182.12 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=123.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+|++++++.+ + .+..|||++++. ++ ||+|||+++++++|+
T Consensus 259 ~~~~~G~p~~~~~~~~~~-~---------~~~~gel~v~~~--------------------~~--~~~TGDl~~~~~dg~ 306 (414)
T PRK08308 259 SHLDLGNPLPHVSVSAGS-D---------ENAPEEIVVKMG--------------------DK--EIFTKDLGYKSERGT 306 (414)
T ss_pred CCCccCccCCCeEEEEec-C---------CCCCceEEEEcC--------------------Cc--eEECCceEEECCCcc
Confidence 457899999999999875 2 235799999742 45 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
++|+||.+++|++ +|++|+|.+||+.+.++++|.+|+|++.++. ..+.++++......
T Consensus 307 l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~------------------ 367 (414)
T PRK08308 307 LHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEID------------------ 367 (414)
T ss_pred EEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC------------------
Confidence 9999999999996 7999999999999999999999999987765 34777777653211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQ 215 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~ 215 (228)
.+.++++++ ..++.+++|..+++++.+| +|++||++|+.|.
T Consensus 368 ---------~~~l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~~~ 408 (414)
T PRK08308 368 ---------PVQLREWCI-QHLAPYQVPHEIESVTEIP------KNANGKVSRKLLE 408 (414)
T ss_pred ---------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCCcCeehhhhh
Confidence 356777887 7899999999999999999 9999999999543
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=170.17 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=100.7
Q ss_pred cCCCeeeeeccEEEE-eeCCeEEEeccCCCeEEccCc---eEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEE
Q psy8218 62 EEGKRWFRTGDIGEL-HQDGVIRIIDRKKDLVKLQAG---EYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVV 134 (228)
Q Consensus 62 ~~g~~~~~TGDl~~~-~~~G~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~ 134 (228)
.+| ||+|||+|++ |++|+|+|+||.+ +| ++|+|. ||++|.+||+|.+|+|++.++.. .++|+|+
T Consensus 207 ~dg--W~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv 277 (365)
T PRK09188 207 SRI--WLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVE 277 (365)
T ss_pred cCc--EEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEE
Confidence 467 9999999998 6999999999997 57 899999 99999999999999999988764 3899998
Q ss_pred eCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHH
Q psy8218 135 PNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDI 214 (228)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l 214 (228)
+..... .++|.++++ ..++. ++|+.+++++++| +|++||++|++|
T Consensus 278 ~~~~~~---------------------------~~el~~~l~-~~L~~-kvP~~v~~v~~lP------~t~~GKi~R~~L 322 (365)
T PRK09188 278 AELPAD---------------------------EKSLRARLA-GAKPP-KPPEHIQPVAALP------RDADGTVRDDIL 322 (365)
T ss_pred ECCCCC---------------------------HHHHHHHHH-hhchh-cCCcEEEEECCCC------CCCCCCccHHHH
Confidence 763210 467888998 88999 9999999999999 999999999999
Q ss_pred HHHHHH
Q psy8218 215 QERYQH 220 (228)
Q Consensus 215 ~~~~~~ 220 (228)
+++..+
T Consensus 323 r~~~~~ 328 (365)
T PRK09188 323 RLIAMN 328 (365)
T ss_pred HHHhhc
Confidence 988643
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=162.68 Aligned_cols=113 Identities=30% Similarity=0.482 Sum_probs=100.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc-----CCCeeeeeccEEEEe
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE-----EGKRWFRTGDIGELH 77 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~-----~g~~~~~TGDl~~~~ 77 (228)
++++|.|+|+++++|+++ .+..++ +|+.|||+++|++++.||+++++.+...|... +|.+||+|||++++|
T Consensus 291 ~~~~G~~~~~~~~~i~~~-~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d 366 (408)
T TIGR01733 291 PVPIGRPLANTRLYVLDD-DLRPVP---VGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYL 366 (408)
T ss_pred ccccCcccCCceEEEECC-CCCCCC---CCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEc
Confidence 678999999999999994 477766 56899999999999999999999888776432 234599999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEE
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v 120 (228)
++|++++.||.+|.+++ +|++|+|.+||+.+..++.|.+|+|
T Consensus 367 ~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 367 PDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred CCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999996 7999999999999999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-19 Score=152.46 Aligned_cols=88 Identities=39% Similarity=0.813 Sum_probs=79.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|.|+||++++|+|++++++++ +|+.|||+++||+++.||+++|+.+.+.|. ++| ||+|||+|++|++|+
T Consensus 330 ~~~~~G~~~~~~~~~ivd~~~~~~~~---~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~-~~~--~~~TGD~g~~d~~G~ 403 (417)
T PF00501_consen 330 KPGSVGKPLPGVEVKIVDPNTGEPLP---PGEPGEIVIRGPNVFSGYYNDPELTAEAFI-DDG--WYRTGDLGRLDEDGY 403 (417)
T ss_dssp STTSEBEESTTEEEEEECTTTSSBES---TTSEEEEEEESTTSBSEETTBHHHHHHHEE-TTS--EEEEEEEEEEETTSE
T ss_pred cccccccccccccccccccccccccc---ccccccccccCCccceeeeccccccccccc-ccc--ceecceEEEECCCCe
Confidence 56899999999999999966688886 568899999999999999999999999885 357 999999999999999
Q ss_pred EEEeccCCCeEEcc
Q psy8218 82 IRIIDRKKDLVKLQ 95 (228)
Q Consensus 82 l~~~GR~~d~i~~~ 95 (228)
|+++||.+|+||++
T Consensus 404 ~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 404 LYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEGSCEEEET
T ss_pred EEEEEeeCCEEEeC
Confidence 99999999999963
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=141.09 Aligned_cols=112 Identities=24% Similarity=0.279 Sum_probs=96.1
Q ss_pred eeeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHH
Q psy8218 66 RWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAE 145 (228)
Q Consensus 66 ~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~ 145 (228)
.|++|||++++|++|+|+|+||.||+|++ +|++|+|.+||+.|.+||.|.+++|... ...+.|+|++.+....
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~~~---- 347 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD--GRRLKAFIVVAEDADE---- 347 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC--CceEEEEEEECCCCCh----
Confidence 37999999999999999999999999996 8999999999999999999999998743 3578888888753210
Q ss_pred HcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCcccccc
Q psy8218 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLK 210 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~ 210 (228)
..+.++|.++++ ..++.+++|..+++++++| +|++||++
T Consensus 348 -------------------~~~~~~l~~~~~-~~L~~~~~P~~i~~~~~lP------~t~~GKi~ 386 (386)
T TIGR02372 348 -------------------AELEIELRATAA-RHLPAPARPDRFRFGTELP------RTGAGKLA 386 (386)
T ss_pred -------------------HHHHHHHHHHHH-HhCCCCCCCcEEEEcccCC------CCCCCCcC
Confidence 112467888888 7899999999999999999 99999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-17 Score=140.09 Aligned_cols=159 Identities=27% Similarity=0.397 Sum_probs=127.6
Q ss_pred cccCCCCCCceEEEe--cCc---cCccccCCCcccccccc-c--cCCCeeeeeccEEEEeeCCeEEEeccCCCeEEccCc
Q psy8218 26 RVCDKPFPRGEILIG--GSN---ISPGYYKNPTKTKEDFF-D--EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAG 97 (228)
Q Consensus 26 ~~~~~~g~~Gel~i~--gp~---~~~gY~~~~~~~~~~~~-~--~~g~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G 97 (228)
|...++|+.|.|.-+ .-+ -|.||.++...|.+... | ..|+-||.|||+-..|+.|+|||.+|..|.+.+ .|
T Consensus 440 Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KG 518 (649)
T KOG1179|consen 440 CIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KG 518 (649)
T ss_pred EEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cC
Confidence 444468889966532 222 38999997777765432 1 367779999999999999999999999999999 69
Q ss_pred eEechHHHHHHHhcCCCcceEEEEecCCCC----eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHH
Q psy8218 98 EYVSLGKVEAELKTCPVIENICVYGDSRKD----YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQE 173 (228)
Q Consensus 98 ~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (228)
++|+..++|.+|....++++|.|+|+.-.. .-+|.|+..+....+ ..++.+
T Consensus 519 ENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d-------------------------~~~l~~ 573 (649)
T KOG1179|consen 519 ENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKD-------------------------LEKLYQ 573 (649)
T ss_pred CcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccch-------------------------HHHHHH
Confidence 999999999999999999999999854332 256666655554322 567888
Q ss_pred hhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 174 HGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 174 ~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++ ..||+|.+|..+++.+++. +|.+.|..+..|.+.
T Consensus 574 ~l~-~~LP~YA~P~FlRl~~~i~------~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 574 HLR-ENLPSYARPRFLRLQDEIE------KTGTFKLQKTELQKE 610 (649)
T ss_pred HHH-hhCccccchHHHHHHhhhh------cccchhhHHHHHHHc
Confidence 888 8899999999999999998 999999999998865
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=134.28 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=106.0
Q ss_pred CceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC-C-----eEEEe
Q psy8218 12 VCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD-G-----VIRII 85 (228)
Q Consensus 12 g~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~-G-----~l~~~ 85 (228)
++.++|+|++++++++ +|+.|||++++.. ...+ +.+ ||+|||+++++++ | .++|.
T Consensus 254 ~~~~eivd~~~g~~v~---~Ge~Gelvvt~~~------------~~~~--p~~--ry~TGDl~~~~~~~Gr~~~~~~~i~ 314 (422)
T TIGR02155 254 HFYPEIIDPHTGEVLP---DGEEGELVFTTLT------------KEAL--PVI--RYRTRDLTRLLPGTARTMRRMDRIT 314 (422)
T ss_pred eeEEEEECCCCCCCCC---CCCeeEEEEecCC------------cccc--cee--eEEcCcEEEEECCCCCccccccccc
Confidence 4677899977888886 5689999998632 1222 345 9999999999875 4 47899
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||.+|+|++ +|.+|+|.+||.+|.++|.|...+.+...... .+.+.|++....... ..++
T Consensus 315 GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~~ 377 (422)
T TIGR02155 315 GRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTL----------------RLHE 377 (422)
T ss_pred CccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccc----------------cchH
Confidence 999999997 69999999999999999999844444333222 566666665432100 0011
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEe--ccCCCCCCCccCccccccHH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLC--SEVWSPDMGLVTAAFKLKRK 212 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v--~~~p~~~~g~~t~~gKv~R~ 212 (228)
....+.++|.+.++ ..+..+. .|.++ +++| +|. ||++|-
T Consensus 378 ~~~~~~~~i~~~~~-~~~~~~~---~v~~~~~~~lp------~~~-GK~~~~ 418 (422)
T TIGR02155 378 QASLLAGEIQHTIK-QEVGVSM---DVHLVEPGSLP------RSE-GKARRV 418 (422)
T ss_pred HHHHHHHHHHHHHH-hccCcEE---EEEEECCCCcc------CCC-CCceEE
Confidence 12233567777777 6666542 34444 6899 766 898763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=134.19 Aligned_cols=138 Identities=21% Similarity=0.352 Sum_probs=114.2
Q ss_pred CCCccccccccccCC--CeeeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC
Q psy8218 50 KNPTKTKEDFFDEEG--KRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD 127 (228)
Q Consensus 50 ~~~~~~~~~~~~~~g--~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~ 127 (228)
..++...+.+..-+| +|+|+|||+|+.-++|.+.|.||.|++||. +|.++.+.+|+..+..+|.|.+++++...++.
T Consensus 436 ~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~ 514 (1032)
T KOG1178|consen 436 STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENST 514 (1032)
T ss_pred cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccc
Confidence 334444444332333 689999999999899999999999999997 69999999999999999999999988865443
Q ss_pred ---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccC
Q psy8218 128 ---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVT 204 (228)
Q Consensus 128 ---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t 204 (228)
.+.|||++....... ....|+.++. ..++.|++|..++.+.++| +|
T Consensus 515 ~~~~l~aFvv~~~~~~~~------------------------~~~~i~~~l~-~~La~y~vPs~~V~l~~vP------l~ 563 (1032)
T KOG1178|consen 515 VGQTLLAFVVERGGSKSV------------------------LIRDIRNYLK-KELASYMLPSLVVPLAKVP------LN 563 (1032)
T ss_pred cCceEEEEEeccCCCCch------------------------hHHHHHHhhc-ccccceecceEEEEhhhCC------cC
Confidence 499999987754221 1578999998 9999999999999999999 99
Q ss_pred ccccccHHHHHHHHHH
Q psy8218 205 AAFKLKRKDIQERYQH 220 (228)
Q Consensus 205 ~~gKv~R~~l~~~~~~ 220 (228)
++||||+++|.+ +..
T Consensus 564 ~~GKvDkkaL~~-~~s 578 (1032)
T KOG1178|consen 564 PNGKVDKKALLE-YNS 578 (1032)
T ss_pred CCCCcChhhhhh-hhh
Confidence 999999999998 543
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-13 Score=125.10 Aligned_cols=102 Identities=30% Similarity=0.476 Sum_probs=93.7
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIR 83 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~ 83 (228)
.++|+|++++++.|.| +..+.+| .|..|||++.|.++.+||++.|+.|...|... ++|+|||++++..+|.+.
T Consensus 541 ~piG~p~~n~~~~ild-~~~~~~p---~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~---~~y~tgD~~r~~~dg~~e 613 (642)
T COG1020 541 VPIGRPVANTQLYILD-QGLRPLP---LGVPGELYIAGLGLALGYLNRPDLTAERFIAL---RLYRTGDLARPLADGALE 613 (642)
T ss_pred CCcceeeCCCeEEEEC-CCCCcCC---CCCCeeeEECCcchhhhhcCChhhhHHHhhhc---cCccCCCeeeECCCCeEE
Confidence 3799999999999999 7888888 45789999999999999999999999999744 489999999999999999
Q ss_pred EeccCCCeEEccCceEechHHHHHHHhcCC
Q psy8218 84 IIDRKKDLVKLQAGEYVSLGKVEAELKTCP 113 (228)
Q Consensus 84 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~ 113 (228)
++||.|+.+|+ .|.+|.+.+||..+.++|
T Consensus 614 ~lgr~D~qvki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 614 YLGRKDSQVKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred EeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence 99999999998 599999999999998875
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=109.83 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=128.2
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccc-ccc------ccCCCeeeeeccEEEEe-
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKE-DFF------DEEGKRWFRTGDIGELH- 77 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~-~~~------~~~g~~~~~TGDl~~~~- 77 (228)
.|...+++++.|++|++..++. .|+.||||+.|..-+.+|++..+.... .|. +-+|..|-||||+|++.
T Consensus 1155 SG~~~~~~~i~IvnPEtk~pc~---dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~ 1231 (1363)
T KOG3628|consen 1155 SGKLPVYTDIAIVNPETKGPCR---DGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRR 1231 (1363)
T ss_pred CCcccccceeEEeCCccccccc---cCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeee
Confidence 4888899999999999988887 568999999998888888765322111 111 12356799999999973
Q ss_pred -----eC----CeEEEeccCCCeEEccCceEechHHHHHHHhc-CCCcceEEEEecCCCCeEEEEEEeCchhHHHHHHHc
Q psy8218 78 -----QD----GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKT-CPVIENICVYGDSRKDYTVALVVPNPSRLKEIAEKL 147 (228)
Q Consensus 78 -----~~----G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~~~ 147 (228)
.. .-||++|-.++.+.+ +|.+.+|.+||..+.. ||.|..|+|+... ..++.+++..... +
T Consensus 1232 t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~~--glvVvviE~~gq~--~----- 1301 (1363)
T KOG3628|consen 1232 TSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQAT--GLVVVVIECHGQQ--E----- 1301 (1363)
T ss_pred eecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeEeeC--CeEEEEEEecCch--h-----
Confidence 22 359999999999998 6999999999999986 8999999999764 4566666655421 1
Q ss_pred CCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeE-EEEecc--CCCCCCCccCccccccHHHHHHHH-HHHHH
Q psy8218 148 NLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNA-VKLCSE--VWSPDMGLVTAAFKLKRKDIQERY-QHEIN 223 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~-v~~v~~--~p~~~~g~~t~~gKv~R~~l~~~~-~~~i~ 223 (228)
...|...+-...|..+.+... +.+|+. +| +.+.|--+|..+++.| .+.++
T Consensus 1302 --------------------~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p------~~~~gEK~R~~I~~~w~~~kL~ 1355 (1363)
T KOG3628|consen 1302 --------------------LADLVPLIVNVVLEEHYIILDVVAFVDKGVFP------RNSRGEKQRAHILDSWLAGKLD 1355 (1363)
T ss_pred --------------------HhhhhHHHHHHHHhhcceEEEEEEEecCCccc------cCCchhhHHHHHHHHHHhcccc
Confidence 122222222233455555544 445653 66 6667788888888655 55776
Q ss_pred hHh
Q psy8218 224 RMY 226 (228)
Q Consensus 224 ~~y 226 (228)
.+|
T Consensus 1356 ~~~ 1358 (1363)
T KOG3628|consen 1356 PIY 1358 (1363)
T ss_pred eee
Confidence 665
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=75.94 Aligned_cols=67 Identities=24% Similarity=0.301 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCC
Q psy8218 104 KVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180 (228)
Q Consensus 104 ~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 180 (228)
+||+++.+||+|.+|+|++.++. ..++|+|++ . .++|+++++ ..+
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~-----------------------------~~~i~~~~~-~~l 48 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D-----------------------------EEEIRDHLR-DKL 48 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H-----------------------------HHHHHHHHH-HHS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e-----------------------------ecccccchh-hhC
Confidence 69999999999999999998765 359999999 1 467888888 779
Q ss_pred CCCcce--eEEEEecc-CCCCCCCccCcccc
Q psy8218 181 ERFEIP--NAVKLCSE-VWSPDMGLVTAAFK 208 (228)
Q Consensus 181 ~~~~~p--~~v~~v~~-~p~~~~g~~t~~gK 208 (228)
++|++| ..++.+++ +| +|++||
T Consensus 49 ~~~~~P~~~~~v~~~~~lP------~t~~GK 73 (73)
T PF13193_consen 49 PPYMVPRRIRFVRLDEELP------RTPSGK 73 (73)
T ss_dssp -GGGS-SEEEEEEESSSEE------BETTSS
T ss_pred CCcceeeEEEEccccCcCC------CCCCCC
Confidence 999999 56666677 99 999998
|
... |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-07 Score=80.07 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=65.6
Q ss_pred cCCCC--CceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee-C----
Q psy8218 7 GAPTT--VCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ-D---- 79 (228)
Q Consensus 7 G~plp--g~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~-~---- 79 (228)
|..++ .+.++|+|++++.+++ +|+.|||++++-.-.. ......++ -|+|||++++.. +
T Consensus 252 g~h~~~d~~~vEIvDp~~~~~vp---~Ge~GELvvT~L~~~~------~r~~~Pli------RYrtgD~~~~~~~~~C~C 316 (445)
T TIGR03335 252 GLHVPEDLVHLDVYDPRHQRFLP---DGECGRIVLTTLLKPG------ERCGSLLI------NYDTEDTTVVISRDRCPC 316 (445)
T ss_pred CccccCCceEEEEEcCCCCCCCc---CCCceEEEEEecCCCC------ccCCceEE------EeecCceEEEecCCCCCC
Confidence 55553 4789999977777676 6789999997632100 00111121 479999999732 2
Q ss_pred C----eEEEeccCCCeEEccCceEechHHHHHHHhcC---CCcc
Q psy8218 80 G----VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTC---PVIE 116 (228)
Q Consensus 80 G----~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~---~~v~ 116 (228)
| .+...||.||++++ .|.+|+|.+||++|.++ +++.
T Consensus 317 Gr~~~r~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 317 GRTHMRILNPEREAETIWI-SGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred CCCcceeCCCcccCceEEE-CCEEeCHHHHHHHHhccCCCCCCC
Confidence 2 24557999999998 69999999999999995 5554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=78.31 Aligned_cols=108 Identities=24% Similarity=0.291 Sum_probs=80.3
Q ss_pred CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC----C-----e
Q psy8218 11 TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD----G-----V 81 (228)
Q Consensus 11 pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~----G-----~ 81 (228)
++..+.|+||+++.+++ .|..|||.++.=. + ....++ -|+|||+..+.++ | -
T Consensus 266 D~~~~Ei~dP~t~e~l~---dge~GelV~T~L~-------~---~~~PlI------RYrtgDit~i~~~~C~cGr~~~ri 326 (438)
T COG1541 266 DHFIFEIVDPETGEQLP---DGERGELVITTLT-------K---EGMPLI------RYRTGDITVILSDPCGCGRTHRRI 326 (438)
T ss_pred hhceeeeecCCcCccCC---CCCeeEEEEEecc-------c---cCcceE------EEEcCCeeEecccCCCCCCccccc
Confidence 56888999999999998 5688999997522 1 111222 5899999999763 3 2
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcc-e--EEEEecCCCCeEEEEEEeCch
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIE-N--ICVYGDSRKDYTVALVVPNPS 138 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~-~--a~v~~~~~~~~~~a~v~~~~~ 138 (228)
..+.||.+|++.++ |.+|+|.+||+.|.+.+.+. + .++........+.+-|+..+.
T Consensus 327 ~~I~GR~dD~l~~~-G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~ 385 (438)
T COG1541 327 ERIEGRSDDMLIVR-GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE 385 (438)
T ss_pred cccCcccccEEEEC-CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence 67899999999985 99999999999999999999 3 333332223457777777653
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=68.28 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=106.5
Q ss_pred ccCCCC-CceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc---------cCCCeeeeeccEEE
Q psy8218 6 AGAPTT-VCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD---------EEGKRWFRTGDIGE 75 (228)
Q Consensus 6 ~G~plp-g~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~---------~~g~~~~~TGDl~~ 75 (228)
+|...| .+-+.++++++.+-|. ++++|||||.++++..+||.-+..|...|.. +...+|++||=+|+
T Consensus 504 ~~~i~~g~~t~~vv~~~t~~LC~---~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGF 580 (1363)
T KOG3628|consen 504 VLCIMPGDATLAVVNPDTNQLCK---TDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGF 580 (1363)
T ss_pred cceecccceEEEEeCCCcccccc---cCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceee
Confidence 444444 4667788866666665 6789999999999999999888777666532 12256899999999
Q ss_pred EeeCCeEEEeccCCCeEEccCceEech----------HHHHHHHhcCCCcceEEEEecCCCCeEEEEEEeCchhHHHHHH
Q psy8218 76 LHQDGVIRIIDRKKDLVKLQAGEYVSL----------GKVEAELKTCPVIENICVYGDSRKDYTVALVVPNPSRLKEIAE 145 (228)
Q Consensus 76 ~~~~G~l~~~GR~~d~i~~~~G~~v~~----------~~iE~~l~~~~~v~~a~v~~~~~~~~~~a~v~~~~~~~~~~~~ 145 (228)
+.+ |.++|+|=.+|.+.--.|...+. ..|+.+++..+.|-++.++- .++...+++-++.....
T Consensus 581 v~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e~--- 653 (1363)
T KOG3628|consen 581 VHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATEE--- 653 (1363)
T ss_pred eeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhhh---
Confidence 974 55666664444443323655544 33455555567777877775 23444444433332110
Q ss_pred HcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 146 KLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
+++ +....+.+.+....+ +..|. -.++.-+.+| +|+.|-|.-..+++.|.+
T Consensus 654 ------~~~-------q~~~~v~q~l~~iHq---v~vyC--ilivP~~tLP------rt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 654 ------NSF-------QWMSRVFQALDSIHQ---VGVYC--ILIVPANTLP------RTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred ------hhh-------hHHHHHHHHHHHHhc---ccceE--EEEeccccCC------CccccccccHHHHHHHHc
Confidence 000 001112233333332 22222 1222335688 777777999999988865
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0088 Score=41.14 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=30.0
Q ss_pred ceEechHHHHHHHhcCCCcc-eEEEEec--CCCCeEEEEEEeCch
Q psy8218 97 GEYVSLGKVEAELKTCPVIE-NICVYGD--SRKDYTVALVVPNPS 138 (228)
Q Consensus 97 G~~v~~~~iE~~l~~~~~v~-~a~v~~~--~~~~~~~a~v~~~~~ 138 (228)
|.+|+|.+||+++.++|++. +..++.. .....+...|...+.
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~ 45 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPG 45 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCc
Confidence 78999999999999999999 4333332 222347777888775
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.38 Score=42.35 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=47.2
Q ss_pred eeeccEEEEeeC----Ce----E-EEeccCCCeEEc--cCceEe--chHHHHHHHh-cCCCcceEEEEecCCCCeEEEEE
Q psy8218 68 FRTGDIGELHQD----GV----I-RIIDRKKDLVKL--QAGEYV--SLGKVEAELK-TCPVIENICVYGDSRKDYTVALV 133 (228)
Q Consensus 68 ~~TGDl~~~~~~----G~----l-~~~GR~~d~i~~--~~G~~v--~~~~iE~~l~-~~~~v~~a~v~~~~~~~~~~a~v 133 (228)
|+|||++...++ |. + .|.||.+|++++ .+|..+ +|..++..+. ..+.|.+.-++-.. ...+...+
T Consensus 297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~ 375 (430)
T TIGR02304 297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIA 375 (430)
T ss_pred eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEE
Confidence 799999887433 32 3 478999999984 456555 8889988855 57888887666433 44555555
Q ss_pred EeC
Q psy8218 134 VPN 136 (228)
Q Consensus 134 ~~~ 136 (228)
++.
T Consensus 376 ~~~ 378 (430)
T TIGR02304 376 DCE 378 (430)
T ss_pred EeC
Confidence 554
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.42 Score=43.30 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=49.6
Q ss_pred eeeeccEEEEee--CC--eEEEeccCCCeEEccCceEechHHHHHHHhcC-----CCcceEEEEec---CCCCeEEEEEE
Q psy8218 67 WFRTGDIGELHQ--DG--VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTC-----PVIENICVYGD---SRKDYTVALVV 134 (228)
Q Consensus 67 ~~~TGDl~~~~~--~G--~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-----~~v~~a~v~~~---~~~~~~~a~v~ 134 (228)
-|+.||+++... ++ .+.|+||.+..+.+ .|++++-.+++.++.+. -.+.+.++... ....+-..+++
T Consensus 370 RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e 448 (528)
T PF03321_consen 370 RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWE 448 (528)
T ss_dssp SEEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEE
T ss_pred eeecCCEEEEeeccCCCcEEEEeccCCceeec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEE
Confidence 489999999852 35 79999999999998 59999999999999875 23455555544 23355666666
Q ss_pred eCch
Q psy8218 135 PNPS 138 (228)
Q Consensus 135 ~~~~ 138 (228)
+...
T Consensus 449 ~~~~ 452 (528)
T PF03321_consen 449 LEGE 452 (528)
T ss_dssp ECS-
T ss_pred eCCC
Confidence 6654
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.7 Score=36.21 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC--------C
Q psy8218 9 PTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD--------G 80 (228)
Q Consensus 9 plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~--------G 80 (228)
+.|.. +.|+||++..+++ +|++|-|-+-++... . -.+ .+-|.|+|.+..+ .
T Consensus 282 ~~p~w-V~iRDp~tl~~~~---~Ge~Gli~vidl~~~-s--------------~p~--~IlTeDlGvl~~~~~c~cr~g~ 340 (365)
T PF04443_consen 282 HVPPW-VIIRDPETLEPLP---PGETGLIQVIDLANT-S--------------YPG--FILTEDLGVLHGDDDCGCRKGK 340 (365)
T ss_pred cCCCe-EEEECCCCCcCCC---CCCeeEEEEEccccc-C--------------CCc--EEEEcceeeecCCCCCCCccCC
Confidence 34444 8888988888887 467898887654321 1 134 5779999987643 3
Q ss_pred eEEEeccCCCe
Q psy8218 81 VIRIIDRKKDL 91 (228)
Q Consensus 81 ~l~~~GR~~d~ 91 (228)
.|.++||.+..
T Consensus 341 ~f~vlGR~~~a 351 (365)
T PF04443_consen 341 YFEVLGRADGA 351 (365)
T ss_pred EEEEEeCCCCC
Confidence 79999998754
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.6 Score=40.19 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=38.3
Q ss_pred eeeeccEEEEeeC----CeEEEeccCCCeEEccCceEechHHHHHHHhc
Q psy8218 67 WFRTGDIGELHQD----GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKT 111 (228)
Q Consensus 67 ~~~TGDl~~~~~~----G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~ 111 (228)
-|+.||+++...- =.+.|+||.+.++.+ .|+++.-..++.++.+
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceec-ccccCCHHHHHHHHHH
Confidence 4799999998532 369999999999997 6999999999998877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 228 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 5e-10 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-09 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 7e-09 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 7e-09 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 2e-08 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-08 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-07 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-07 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-07 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-07 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-07 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-07 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-07 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-07 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 3e-07 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 3e-07 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 3e-07 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-07 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 3e-07 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-07 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-07 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 5e-07 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 6e-07 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 9e-07 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-06 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-06 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-06 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-06 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-06 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-05 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-05 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-05 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 1e-04 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-04 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-04 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 5e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 5e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-20
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPR-----GEILIGGSNISPGYYKNPTKTKEDF 59
+ G P + +R+ D +EG P P+ GE+ + G I+ GYY N T+
Sbjct: 356 KTGLPIPLVRLRVAD-EEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENIC 119
+G +FRTGDI ++G + I DR KDL+K GE++S +E L P ++
Sbjct: 409 -TPDG--FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAA 464
Query: 120 VYG--DSRKDYT-VALVVPNP 137
V + +A+VVP
Sbjct: 465 VVAIPHPKWQERPLAVVVPRG 485
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-20
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
G G R+ D + G PR G I + G N+ GY++ P KTK +F
Sbjct: 320 GAVGPALPGVSARVTDPETGK------ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF- 372
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
++G +F TGD+G++ + G + I+ R KDLV + G V ++E+E+ P + V
Sbjct: 373 RDDG--FFITGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAV 429
Query: 121 YG--DSRKDYTV-ALVVPNP 137
G + V A+VV +
Sbjct: 430 IGVPHADFGEGVTAVVVRDK 449
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-20
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDFFD 61
G AG T D+ + D+G GE++I + Y+ P T++ F +
Sbjct: 337 GSAGRATMFTDVAVRG-DDGV------IREHGEGEVVIKSDILLKEYWNRPEATRDAFDN 389
Query: 62 EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVY 121
G WFRTGDIGE+ +G + I DR KD++ GE V ++E+ + P + + V
Sbjct: 390 --G--WFRTGDIGEIDDEGYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVI 444
Query: 122 G--DSRKDYTV-ALVVPNPSRLKE 142
G D + A+VV + + + E
Sbjct: 445 GLPDEKWGEIAAAIVVADQNEVSE 468
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-20
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G P ++RLV+ ++G GEI + G N+ Y P T F E+
Sbjct: 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF-TED 381
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRK-KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
G +FRTGD+ DG +RI+ RK DL+K G + G++E L P + V G
Sbjct: 382 G--FFRTGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTG 438
Query: 123 DSRKDY---TVALVVPNP 137
+ D VA +VP
Sbjct: 439 EPDPDLGERIVAWIVPAD 456
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-20
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDF 59
+ G P + +++++ ++G + GEI+I G NI GY+K + +E +
Sbjct: 355 STTQGVPMSDIELKVISLEDG------RELGVGESGEIVIRGPNIFKGYWKREKENQECW 408
Query: 60 -FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+DE+G+++FRTGD+G + ++G + DR K+++K G ++ ++EA L + ++
Sbjct: 409 WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDV 467
Query: 119 CVYG--DSRKDYTV-ALVVPNPSRLKEIAEK 146
V G D A +V P ++ E+
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 5e-19
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
AG P + +VD E P P GEI++ G + GY+ N T+ F
Sbjct: 321 KSAGRPLFWRTVAVVD-AEDR------PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR 373
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDR--KKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ G W TGD+G DG + R +K+L+K GE V +VE LK P I +
Sbjct: 374 N--G--WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADA 428
Query: 119 CVYG--DSRKDYTV-ALVVPNP 137
V G D + + A+ V P
Sbjct: 429 VVIGVPDPQWSEAIKAVCVCKP 450
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 7e-19
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFF 60
G G + ++VD D G K RGE+ + G I GY NP T
Sbjct: 360 GAVGKVVPFFEAKVVDLDTG------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALI- 412
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D++G W +GDI +D I+DR K L+K + G V+ ++E+ L P I + V
Sbjct: 413 DKDG--WLHSGDIAYWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGV 469
Query: 121 YG--DSRKDYTV-ALVVPNP 137
G D A+VV
Sbjct: 470 AGLPDDDAGELPAAVVVLEH 489
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKED 58
+ G P ++ + D EGN P P+ G ++ G GYYK+P
Sbjct: 356 TQGYPMCPDD--EVWVAD-AEGN------PLPQGEVGRLMTRGPYTFRGYYKSPQHNASA 406
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
F D G ++ +GD+ + +G I + R+KD + + GE ++ ++E L P +
Sbjct: 407 F-DANG--FYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIAAEEIENLLLRHPAVIYA 462
Query: 119 CVYG--DSRKDY---TVALVVPNP 137
+ D + A +V
Sbjct: 463 ALVSMEDEL--MGEKSCAYLVVKE 484
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-18
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFF 60
G +G + +++D D K RGE+ + G + GY NP TKE
Sbjct: 362 GASGKVVPLFKAKVIDLDTK------KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI- 414
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
DEEG W TGDIG ++ I+DR K L+K + G V ++E+ L P I + V
Sbjct: 415 DEEG--WLHTGDIGYYDEEKHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGV 471
Query: 121 YG--DSRKDYTV-ALVVPNP 137
G D A+VV
Sbjct: 472 AGVPDPVAGELPGAVVVLES 491
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-18
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFF 60
G G ++++VD + G P GEI I G I GY +P T
Sbjct: 355 GACGTVVRNAEMKIVDPETG------ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTI- 407
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
D+EG W TGDIG + D + I+DR K+L+K
Sbjct: 408 DKEG--WLHTGDIGYIDDDDELFIVDRLKELIK 438
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 5e-18
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGSNISPGYYKNPTKTKEDFF 60
G G ++++VD D G GEI I G I GY NP T E
Sbjct: 402 GACGTVVRNAEMKIVDPDTG------DSLSRNQPGEICIRGHQIMKGYLNNPAATAETI- 454
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK---LQAGEYVSLGKVEAELKTCPVIEN 117
D++G W TGDIG + D + I+DR K+L+K Q V+ ++EA L P I +
Sbjct: 455 DKDG--WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQ----VAPAELEALLIGHPDITD 508
Query: 118 ICVYGDSRKDYT---VALVVPNP 137
+ V + VA VV +
Sbjct: 509 VAVVAMKEEAAGEVPVAFVVKSK 531
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-18
Identities = 51/223 (22%), Positives = 86/223 (38%), Gaps = 47/223 (21%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSN-ISPGYYKNPTKTKED 58
TG AP ++R+V G + GE+++ S+ GY P T E
Sbjct: 320 TGTEMAPGFFSEVRIVRIGGGVDEIV----ANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
D G W+RT D+ +G +RI+ R D++ GE + ++E L T P + +
Sbjct: 376 LQD--G--WYRTSDVAVWTPEGTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEV 430
Query: 119 CVYG--DSRKDYTV-ALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V G D R +V A VVP ++L+ + L
Sbjct: 431 VVIGLADQRWGQSVTACVVPRLG-----------ETLS-------AD-------ALDTFC 465
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218
+ S L F+ P + ++ P A K+ R+ + ++
Sbjct: 466 RSSELADFKRPKRYFILDQL--P----KNALNKVLRRQLVQQV 502
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-18
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKEDFF 60
G G P +I L D + G+ P G++ I G + + Y+ N K++ F
Sbjct: 352 GTTGRPVPGYEIELRD-EAGH------AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL 404
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
E W R+GD +G R D++K +G+YVS +VE L + V
Sbjct: 405 GE----WIRSGDKYCRLPNGCYVYAGRSDDMLK-VSGQYVSPVEVEMVLVQHDAVLEAAV 459
Query: 121 YG--DSRKDYTVALVVPNP 137
G T A VV
Sbjct: 460 VGVDHGGLVKTRAFVVLKR 478
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-17
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G P+ D+++ + GE++I G+N+ GY F +
Sbjct: 327 DTVGMPSANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPT-DLTGTFEN-- 374
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G +F TGDI E+ +G + I DR+KDL+ GE + ++E K P I + G
Sbjct: 375 G--YFNTGDIAEIDHEGYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGH 431
Query: 123 -DSRKDYTV-ALVVPNPS 138
D V
Sbjct: 432 PDDTWGQVPKLYFVSESD 449
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKED 58
+ G+ +P + R+ D D G +L G GYYK
Sbjct: 352 TQGKPMSPYD--ESRVWD-DHDR------DVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
F E+G ++RTGDI L +DG I + R KD + + GE V+ +VE L P + +
Sbjct: 403 F-TEDG--FYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHDA 458
Query: 119 CVYG--DSRKDY---TVALVVPNPSRLKE 142
+ D + ++P K
Sbjct: 459 AMVSMPDQF--LGERSCVFIIPRDEAPKA 485
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPR---GEILIGGSNISPGYYKNPTKTKED 58
+ GR + +I++VD ++ P G + G GYY++P +
Sbjct: 361 TQGRPISS--DDEIKIVD-EQYR------EVPEGEIGMLATRGPYTFCGYYQSPEHNSQV 411
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
F DE+ ++ +GD+ + DG +R++ R KD + + GE ++ ++E + P + +
Sbjct: 412 F-DEDN--YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMHA 467
Query: 119 CVYG--DSRKDY---TVALVVPNPSRLKEIAEK 146
+ D + + + A +V LK + +
Sbjct: 468 ALVAIVDEQ--FGEKSCAFIVSRNPELKAVVLR 498
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-13
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDF----- 59
G P + +++++D D CD GEI + ++++ GY+ P +T+ F
Sbjct: 377 GNP--IQEVKIIDPDTL--IPCD---FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIK 429
Query: 60 FDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLV 92
DE + RTGD+G LH + + + R KDL+
Sbjct: 430 DDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 6e-10
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 13 CDIRLVDWDEGNYRVCDKPFPR--GEILIGGSNISPGYYKNPTKTKEDF--------FDE 62
+R+VD D C GEI + G N++ GY++ P +++ F
Sbjct: 402 PIVRIVDSDTC--IECP---DGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGT 456
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDR 87
W RTGD G + DG + II R
Sbjct: 457 PEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-----GYYKNPTKTKED 58
G G + D++++D D+GN V P G+I I I P GY NP KT +
Sbjct: 374 GYMGTAASCYDVQIID-DKGN--VLP-PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAAN 429
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCP-VIE 116
++ GD G +DG + + R D++ +G + +VE L P V+E
Sbjct: 430 IRG----DFWLLGDRGIKDEDGYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVE 483
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI++ G +S GY NP KT E FF +G+ + TGDIG L +D ++ R +K
Sbjct: 349 GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKY 408
Query: 95 QAGEYVSLGKVEAELKTCPVIENICV----YGDSRKDYTVALVVPNPSRLKEIAEKLNL 149
G + L V +L P++ + + + +A +V + +L L
Sbjct: 409 A-GYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELEL 466
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GEI+ G+ ++ GY + +T+ F + R +RTGD + G +R I R
Sbjct: 361 GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDG 420
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICV-----YGDSRKDYTVALVVPNPSRLKEIAE 145
VKL G + L +E + P I + + G + A + + +
Sbjct: 421 QVKLN-GYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ--LLCAWTGKADASPQALLR 477
Query: 146 KL 147
+L
Sbjct: 478 QL 479
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISP-----GYYKNPTKTKED 58
G G PT I L+D +G +C+ GEI+I P Y K+P +T+E
Sbjct: 393 GSIGKPTPGYKIELMD-RDGR--LCE-VGEEGEIVINTMEGKPVGLFVHYGKDPERTEET 448
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVK 93
+ D ++ TGD+ + +DG + + R D++K
Sbjct: 449 WHDG----YYHTGDMAWMDEDGYLWFVGRADDIIK 479
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-07
Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 58/236 (24%)
Query: 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGY----------YKNPTKTK 56
+ V + W + K + + + Y + P+
Sbjct: 56 MSKDAVSGTLRLFW-----TLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMT 109
Query: 57 EDFFDEEGKRWFRTGDIGELHQDGVIR---IIDRKKDLVKLQAGEYVSL------GKVEA 107
+ ++ + + D + V R + ++ L++L+ + V + G
Sbjct: 110 RMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---- 162
Query: 108 ELKTCPVIENICVYGDSRKDYTVALVVPN------------PSRLKEIAEKLNLD-SLTF 154
KT ++ +C Y V + P + E+ +KL +
Sbjct: 163 --KTWVALD-VC------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLK 210
H K + +Q + L+ N + + V + AF L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLS 265
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GE++I GS ++ GY P F D G++ +RTGDI + D I + RK + VK+
Sbjct: 375 GELVIEGSLVANGYLNRPDAKG--FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKV 432
Query: 95 QAGEYVSLGKVEAELKTCPVIENICV------YGDSRKDYTVALVVPNPSRLKEIAEKLN 148
+ G+ + LG+V +++ + V G S++ + V+ V + + ++ +N
Sbjct: 433 R-GQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQ-FLVSFVASSGAAVRGELRWIN 490
Query: 149 LDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFK 208
+ L++ +++ L + +P+ + + + L + K
Sbjct: 491 ENYKEINN-------------SLRQACEQT-LPAYMVPDFI-----IPISFIPLRDTSAK 531
Query: 209 LKRK 212
K
Sbjct: 532 TDAK 535
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI+I G ++S GY P T++ FF EG+ +RTGD G + DG I R +KL
Sbjct: 345 GEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKL 403
Query: 95 QAGEYVSLGKVEAELKTCPVIENICV--YGDSRKD-YTVALVVPNP 137
G + L ++E ++ + + V Y + Y +A +VP
Sbjct: 404 H-GYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEE 448
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKL 94
GEI+I G ++S GY +P T++ F +G+R ++TGD G + +G++ R +KL
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIKL 404
Query: 95 QAGEYVSLGKVEAELKTCPVIENICV--YGDSRKD-YTVALVVPNP 137
G + L ++E L+ C +E + K Y +A+VVP
Sbjct: 405 H-GYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGE 449
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDFFD---EEGKRWFRTGDIGELHQDGVIRIIDRKKDL 91
GE+ IGG ++ GY+K P T + F D G++ ++TGD DG I + R +
Sbjct: 373 GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQ 432
Query: 92 VKLQAGEYVSLGKVEAELKTCPVIENICV--YGDSRKD-YTVALVVPNPS 138
VK++ G V L +VE+ L I V + D ++ Y A V
Sbjct: 433 VKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 481
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 35 GEILIGGSNISPGYYKNPTKTKEDF----FDEEGKRWFRTGDIGELHQDGVIRIIDRKKD 90
GE+ I G +S GY TKE F F + G+ +RTGD+ DG I R D
Sbjct: 804 GELCISGMGVSKGYVNRADLTKEKFIENPF-KPGETLYRTGDLARWLPDGTIEYAGRIDD 862
Query: 91 LVKLQAGEYVSLGKVEAELKTCPVIENICV--YGDSRKD-----YTVALVVPNPSRLKE- 142
VK++ G + L ++E +L+ P +++ V D Y V + +K
Sbjct: 863 QVKIR-GHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAH 921
Query: 143 IAEKL 147
+ ++L
Sbjct: 922 LKKQL 926
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.97 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.94 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.9 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.9 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.89 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.7 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.44 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.34 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 97.9 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.09 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.08 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 96.71 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 82.55 |
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=286.63 Aligned_cols=186 Identities=25% Similarity=0.412 Sum_probs=162.7
Q ss_pred CCCccCCCCC-ceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 3 TGRAGAPTTV-CDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 3 ~~s~G~plpg-~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.+++|+|+++ .+++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|. .+| ||+|||+|++|++|+
T Consensus 350 ~~~~G~p~~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~~~TGDlg~~~~dG~ 422 (539)
T 1mdb_A 350 VNTQGKPMSPYDESRVWD-DHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASFT-EDG--FYRTGDIVRLTRDGY 422 (539)
T ss_dssp HHCCCEESSTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTSCSSCTTCHHHHHHHBC-TTS--CEEEEEEEEECTTSC
T ss_pred CCCCCcccCCCceEEEEC-CCCCCCc---CCCcceEEeeCcccchhhcCChhhhhhhcc-CCC--CeecCceEEECCCCc
Confidence 3589999976 4899999 7888887 568999999999999999999999999884 578 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 423 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----------------- 484 (539)
T 1mdb_A 423 IVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK----------------- 484 (539)
T ss_dssp EEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCC-----------------
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCC-----------------
Confidence 9999999999996 79999999999999999999999999977543 58899988642111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhcC
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYAS 228 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~~ 228 (228)
.++|+++++++.|+.|++|+.|++++++| +|++||++|++|+++|.+.|+++|++
T Consensus 485 ---------~~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 ---------AAELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp ---------HHHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred ---------HHHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence 46788888834499999999999999999 99999999999999999999999974
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=282.61 Aligned_cols=180 Identities=26% Similarity=0.427 Sum_probs=161.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
.++++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...|. ++| ||+|||+|++|++|+
T Consensus 318 ~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 318 VPGAVGPALPGVSARVTDPETGKELP---RGDIGMIEVKGPNVFKGYWRMPEKTKSEFR-DDG--FFITGDLGKIDERGY 391 (503)
T ss_dssp CTTEEEEBCTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHTBC-TTS--CEEEEEEEEECTTCE
T ss_pred cCCccccCCCCeEEEEEECCCCCCCc---CCCceEEEEECCchhhhhcCChhhhHhhhC-CCC--CeEcceeEEEcCCCc
Confidence 46789999999999999988899887 568999999999999999999999999984 577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++.. .++|+|++......+
T Consensus 392 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~---------------- 454 (503)
T 4fuq_A 392 VHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID---------------- 454 (503)
T ss_dssp EEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC----------------
T ss_pred EEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC----------------
Confidence 9999999999996 79999999999999999999999999876543 488899887643111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++.++++ ..|+.|++|+.|++++++| +|++||++|++|+++|++
T Consensus 455 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 455 ---------EAQVLHGLD-GQLAKFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ---------HHHHHHHHB-TTBCGGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred ---------HHHHHHHHH-hhcccCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 467888888 8899999999999999999 999999999999999864
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=282.49 Aligned_cols=180 Identities=28% Similarity=0.418 Sum_probs=159.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...| +.+| ||+|||+|++|++|+
T Consensus 353 ~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~~g--~~~TGDl~~~~~dG~ 426 (536)
T 3ni2_A 353 KPGACGTVVRNAEMKIVDPETGASLP---RNQPGEICIRGDQIMKGYLNDPEATSRTI-DKEG--WLHTGDIGYIDDDDE 426 (536)
T ss_dssp CTTCCCEECSSCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTSC
T ss_pred CCCCeeEeCCCcEEEEEeCCCCcCCC---CCCccEEEEeCcccchhhcCChhHHHhhc-cCCC--ceEcccEEEEcCCce
Confidence 57899999999999999988898887 56899999999999999999999999888 4577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+.....
T Consensus 427 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 489 (536)
T 3ni2_A 427 LFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---------------- 489 (536)
T ss_dssp EEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC----------------
T ss_pred EEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999876543 488999887642110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.++|+++++ ..++.|++|+.|++++++| +|++|||+|++|+++|.+
T Consensus 490 ---------~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 490 ---------EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---------HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ---------HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 467888998 8899999999999999999 999999999999998864
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=283.56 Aligned_cols=186 Identities=25% Similarity=0.426 Sum_probs=130.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccc-ccCCCeeeeeccEEEEeeCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF-DEEGKRWFRTGDIGELHQDG 80 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~-~~~g~~~~~TGDl~~~~~~G 80 (228)
+.+++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|...|. +.+|.+||+|||+|++|++|
T Consensus 354 ~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG 430 (549)
T 3g7s_A 354 KSTTQGVPMSDIELKVISLEDGRELG---VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEG 430 (549)
T ss_dssp GTTSCCEECTTCEEEEECSSSCCEEC---TTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTS
T ss_pred cCCCccccCCCCEEEEEeCCCCcCCC---CCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCc
Confidence 35789999999999999988999887 568999999999999999999999999883 45778899999999999999
Q ss_pred eEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 81 VIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 81 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+.... ..+
T Consensus 431 ~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~--------~~~----- 496 (549)
T 3g7s_A 431 FLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG--------KVD----- 496 (549)
T ss_dssp CEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT--------SCC-----
T ss_pred eEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC--------cCC-----
Confidence 99999999999997 79999999999999999999999999987653 48899998765210 000
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++|||+|++|++++.+.
T Consensus 497 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 497 ----------EEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp ----------HHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred ----------HHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 467889998 8899999999999999999 9999999999999998753
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=282.47 Aligned_cols=185 Identities=28% Similarity=0.383 Sum_probs=163.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|+.|||+++||+++.|||++|+.|...| ..+| ||+|||+|++|++|+
T Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f-~~~g--~~~TGDl~~~~~dG~ 433 (548)
T 2d1s_A 360 KPGASGKVVPLFKAKVIDLDTKKSLG---PNRRGEVCVKGPMLMKGYVNNPEATKELI-DEEG--WLHTGDIGYYDEEKH 433 (548)
T ss_dssp CTTCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTCC
T ss_pred CCCCCCccCCCceEEEEeCCcCccCC---CCCCeEEEECCHHHhhhhcCChHHhhhcc-cCCc--EEEccCEEEEcCCCe
Confidence 46899999999999999988888887 56899999999999999999999999888 3577 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++...... +
T Consensus 434 l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~----------~------ 496 (548)
T 2d1s_A 434 FFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM----------T------ 496 (548)
T ss_dssp EEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC----------C------
T ss_pred EEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCC----------C------
Confidence 9999999999996 79999999999999999999999999977543 58899988754210 0
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCccee-EEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPN-AVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~ 225 (228)
.++|+++++ ..++.+++|+ .|++++++| +|++||++|++|+++|.+.|++|
T Consensus 497 ---------~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ---------EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ---------HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred ---------HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 467888888 8899999999 999999999 99999999999999999988875
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=272.48 Aligned_cols=185 Identities=28% Similarity=0.400 Sum_probs=162.5
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|...+|.+||+|||+|++ ++|+|
T Consensus 317 ~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l 391 (511)
T 3e7w_A 317 SLPVGFAKPDMNIFIMD-EEGQPLP---EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQI 391 (511)
T ss_dssp SCCCBEECTTCEEEEEC-TTSCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEE
T ss_pred cCCCcceeCCCEEEEEC-CCCCCCC---CCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeE
Confidence 46799999999999999 7788887 5689999999999999999999999999876677778999999999 69999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....
T Consensus 392 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~------------------ 452 (511)
T 3e7w_A 392 FCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE------------------ 452 (511)
T ss_dssp EEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCS------------------
T ss_pred EEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccccc------------------
Confidence 999999999997 7999999999999999999999999987654 358999998765311
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
....+.+.|+++++ ..|+.|++|+.+++++++| +|++|||+|++|++++++.
T Consensus 453 ---~~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 453 ---KEFQLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp ---SHHHHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 01123567888888 7899999999999999999 9999999999999999763
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=276.84 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=157.2
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..+++|+|+|+++++|+| +++++++ +|+.|||+++||+++.|||++|+.|.+.|...++.+||+|||+|++|++|+
T Consensus 320 ~~~~vG~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~ 395 (521)
T 3l8c_A 320 TRLPIGYPKPDSPTYIID-EDGKELS---SGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNI 395 (521)
T ss_dssp SSCEEEEECTTSCEEEEC-TTSCBCC---TTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSC
T ss_pred CccccccccCCCEEEEEC-CCcCCCC---CCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCe
Confidence 457899999999999999 7888887 568999999999999999999999999886444555999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC----CeEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK----DYTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|+|.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++.+....+
T Consensus 396 l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~--------------- 459 (521)
T 3l8c_A 396 LLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER--------------- 459 (521)
T ss_dssp EEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG---------------
T ss_pred EEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc---------------
Confidence 9999999999997 7999999999999999999999999986533 3488999987753210
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
......+.++|+++++ ..|+.|++|..|++++++| +|++|||+|++|+++|+++
T Consensus 460 ---~~~~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 460 ---FDRELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ---CSSHHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred ---cccchhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence 0001123678999998 8899999999999999999 9999999999999998764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=270.36 Aligned_cols=186 Identities=24% Similarity=0.395 Sum_probs=161.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|.|+++++++|+| +++++++ +|+.|||+++||+++.|||++|+.|...|...+|.+||+|||+|++ ++|+
T Consensus 317 ~~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~ 391 (512)
T 3fce_A 317 KSLPVGYCKSDCRLLIMK-EDGTIAP---DGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391 (512)
T ss_dssp SSCCCEEECTTCEEEEEC-SSSCBCC---TTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTE
T ss_pred CCCccccccCCcEEEEEC-CCCCCCC---CCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCE
Confidence 467899999999999999 8888887 5689999999999999999999999998854455569999999999 7999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||+.|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 392 l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~----------------- 453 (512)
T 3fce_A 392 LFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE----------------- 453 (512)
T ss_dssp EEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS-----------------
T ss_pred EEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc-----------------
Confidence 9999999999997 89999999999999999999999999876543 48899998764311
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
....+.+.|+++++ ..|+.|++|+.+++++++| +|++||++|++|+++|++.
T Consensus 454 ----~~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 454 ----KEFKLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp ----SHHHHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred ----chhhhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 01123567889998 8999999999999999999 9999999999999999753
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=277.72 Aligned_cols=181 Identities=26% Similarity=0.404 Sum_probs=141.9
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec-----CccCccccCCCccccccccccCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG-----SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g-----p~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~ 76 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+|+| ++++.|||++|+.|.+.|. +| ||+|||+|++
T Consensus 391 ~~~~~G~p~~~~~v~ivd-~~g~~~~---~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~--~g--wy~TGDlg~~ 462 (580)
T 3etc_A 391 KPGSIGKPTPGYKIELMD-RDGRLCE---VGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH--DG--YYHTGDMAWM 462 (580)
T ss_dssp CTTCCBEECTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE--TT--EEEEEEEEEE
T ss_pred CCCccccCCCCCEEEEEC-CCCCCCC---CCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC--CC--EEecCcEEEE
Confidence 578999999999999999 6788887 56899999997 7899999999999999984 78 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .+.|+|++.+....
T Consensus 463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~------------ 529 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP------------ 529 (580)
T ss_dssp CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC------------
T ss_pred CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC------------
Confidence 999999999999999997 69999999999999999999999999977653 48899998765210
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.++|+++++ ..+++|++|+.|++++++| +|++|||+|++|++++++
T Consensus 530 ----------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 530 ----------SDSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ----------CHHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred ----------CHHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhc
Confidence 0122577888888 7899999999999999999 999999999999999875
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=278.80 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=161.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| +++++++ +|+.|||+|+| |+++.|||++++.+...++. .+| ||+|||+|++|+
T Consensus 433 ~~~s~G~p~~g~~v~i~d-~~g~~v~---~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g--~y~TGDlg~~d~ 506 (652)
T 1pg4_A 433 KAGSATRPFFGVQPALVD-NEGHPQE---GATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDE 506 (652)
T ss_dssp CTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT--SEEEEEEEEECT
T ss_pred cCCccccCcCCCeEEEEC-CCCCCcC---CCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC--EEECCcEEEEcC
Confidence 568999999999999999 7888887 46889999999 79999999999988877643 367 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
||+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++....
T Consensus 507 dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~-------------- 571 (652)
T 1pg4_A 507 DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP-------------- 571 (652)
T ss_dssp TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC--------------
T ss_pred CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC--------------
Confidence 9999999999999997 7999999999999999999999999997654 349999998764210
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
...+.++|+++++ ..++++++|+.|++++++| +|++|||+|++|++++.+.+++
T Consensus 572 --------~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 572 --------SPELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp --------CHHHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC---
T ss_pred --------CHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCC
Confidence 0122567888888 7899999999999999999 9999999999999999876543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=274.91 Aligned_cols=178 Identities=28% Similarity=0.408 Sum_probs=156.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+|+++++|+| +++++++ +|++|||+++||+++.|||++|+.|...|.+. +|.+||+|||+|++|+
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENLQLKS---VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCcccceeCCCEEEEEC-CCcCCCC---CCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 356899999999999999 7888887 56899999999999999999999999888532 3456999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+|++ +|++|+|.+||+.|.+||.|.+|+|++.++. ..++|+|++.....
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--------------- 483 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP--------------- 483 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC---------------
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCC---------------
Confidence 9999999999999997 8999999999999999999999999987654 34888988764211
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~ 218 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|++.+
T Consensus 484 ------------~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 484 ------------LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ------------HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred ------------HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 456788888 7899999999999999999 9999999999998653
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=267.62 Aligned_cols=177 Identities=25% Similarity=0.424 Sum_probs=156.9
Q ss_pred CCCCccCCCCCceEEEEeCCCC---CccccCCCCCCceEEEe-cCccCccccCCCccccccccccCCCeeeeeccEEEEe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEG---NYRVCDKPFPRGEILIG-GSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELH 77 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~---~~~~~~~~g~~Gel~i~-gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~ 77 (228)
+.+++|.|+++++++|++ +.+ +.++ +|+.|||+++ ||+++.|||++|+.|...| .+| ||+|||+|++|
T Consensus 319 ~~~~~g~p~~~~~~~i~~-~~~~~~~~~~---~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f--~~g--~~~TGDlg~~~ 390 (504)
T 1t5h_X 319 KTGTEMAPGFFSEVRIVR-IGGGVDEIVA---NGEEGELIVAASDSAFVGYLNQPQATAEKL--QDG--WYRTSDVAVWT 390 (504)
T ss_dssp SSSSEEBCCTTCCEEEEC-TTSCTTCBCC---TTCCEEEEEECCTTSCCCBTTCHHHHHHHE--ETT--EEEEEEEEEEC
T ss_pred CCCccccCCCCCceeEEe-ccCCCCCcCC---CCCcceEEEeCCceeeceecCCchhhhhhh--cCC--ccccCcEEEEC
Confidence 468899999999999999 555 6665 6789999999 9999999999999999988 478 99999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++|+|+|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|++.+.... +
T Consensus 391 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----------~-- 457 (504)
T 1t5h_X 391 PEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL----------S-- 457 (504)
T ss_dssp TTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCC----------C--
T ss_pred CCceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCc----------C--
Confidence 99999999999999996 7999999999999999999999999998765 359999998764210 0
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhC-CCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKS-NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQ 219 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~ 219 (228)
.++|+++++ . .|+.|++|+.|++++++| +|++|||+|++|+++|+
T Consensus 458 -------------~~~l~~~~~-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 -------------ADALDTFCR-SSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -------------HHHHHHHHH-TSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred -------------HHHHHHHHh-hccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 457888888 6 899999999999999999 99999999999999874
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=270.26 Aligned_cols=180 Identities=29% Similarity=0.474 Sum_probs=140.7
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+| +++++++..++|++|||+|+||+++.|||++|+.|...|. ++| ||+|||+|+++++|+
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~-~~g--~y~TGDl~~~~~dG~ 397 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFT-EDG--FFRTGDMAVRDPDGY 397 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBC-TTS--CEEEEEEEEECTTSC
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhc-CCC--CCccCCeEEECCCcc
Confidence 467999999999999999 7788887544578999999999999999999999999984 577 999999999999999
Q ss_pred EEEeccC-CCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 82 IRIIDRK-KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 82 l~~~GR~-~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
|+|+||. |++|++ +|++|+|.+||++|.+||+|.+|+|++.++.. .++|+|++...... ..
T Consensus 398 l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~---------~~----- 462 (505)
T 3nyq_A 398 VRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP---------PA----- 462 (505)
T ss_dssp EEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC---------CC-----
T ss_pred EEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC---------CC-----
Confidence 9999998 588996 79999999999999999999999999876543 58999998753210 00
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ +.|+.|++|+.|++++++| +|++||++|++|++.
T Consensus 463 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 463 ----------LGTLADHVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNRD 505 (505)
T ss_dssp ----------HHHHHHHHH-HHTCGGGSCSEEEECSCCC------C--------------
T ss_pred ----------HHHHHHHHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhccC
Confidence 467888888 7899999999999999999 999999999999863
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=270.71 Aligned_cols=178 Identities=28% Similarity=0.517 Sum_probs=155.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|++++++++++ +++..++ +| .|||+|+||+++.|||++|+.|...| .+| ||+|||+|++|++|+
T Consensus 335 ~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f--~~g--~~~TGDl~~~~~dG~ 405 (517)
T 3r44_A 335 KAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF--DNG--WFRTGDIGEIDDEGY 405 (517)
T ss_dssp TTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--ETT--EEEEEEEEEECTTSC
T ss_pred cCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--cCC--CEecceeEEEcCCee
Confidence 468999999999999999 7777776 34 79999999999999999999999998 478 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||.+|.+||+|.+|+|++.++.. .++|+|........
T Consensus 406 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~----------------- 467 (517)
T 3r44_A 406 LYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVS----------------- 467 (517)
T ss_dssp EEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCC-----------------
T ss_pred EEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCC-----------------
Confidence 9999999999996 79999999999999999999999999876553 36666643322111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|+++|.+.+
T Consensus 468 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 468 ---------EQQIVEYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp ---------HHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred ---------HHHHHHHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence 467888888 7899999999999999999 99999999999999998754
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=273.96 Aligned_cols=181 Identities=30% Similarity=0.500 Sum_probs=124.1
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|+|+|+++++|+| +++++++.. .++.|||+++||+++.|||++|+.|...|. ++| ||+|||+|++|++|+|
T Consensus 354 ~~~~G~p~~~~~~~i~d-~~g~~~~~~-~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~-~~g--~~~TGDlg~~d~dG~l 428 (541)
T 1v25_A 354 KAKTGLPIPLVRLRVAD-EEGRPVPKD-GKALGEVQLKGPWITGGYYGNEEATRSALT-PDG--FFRTGDIAVWDEEGYV 428 (541)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSS-SCCCEEEEEESTTSBSSCBTCHHHHHTTBC-TTS--CEEEEEEEEECTTCCE
T ss_pred cCCCCCcCCCcEEEEEC-CCCCCCCCC-CCcceEEEEeCcchhccccCChhhhhhhcc-CCC--CeEcCCEEEEcCCceE
Confidence 46899999999999999 778877632 236899999999999999999999999884 578 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++......
T Consensus 429 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------------ 489 (541)
T 1v25_A 429 EIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT------------------ 489 (541)
T ss_dssp EEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------------
T ss_pred EEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCC------------------
Confidence 999999999995 8999999999999999999999999997765 358888887621110
Q ss_pred ChHHHHHHHHHHHHhhhhC-CCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKS-NLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~-~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i 222 (228)
.+++.++++ . .|+.|++|+.+++++++| +|++||++|++|+++|++.+
T Consensus 490 --------~~~l~~~~~-~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 490 --------PEELNEHLL-KAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp --------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred --------HHHHHHHHH-hccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHhh
Confidence 356777887 5 899999999999999999 99999999999999886543
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=265.49 Aligned_cols=183 Identities=25% Similarity=0.392 Sum_probs=160.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEe-----cCccCccccCCCccccccccccCCCeeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIG-----GSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~-----gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~ 76 (228)
+++++|+|+|+++++|+| +++++++ +|++|||+++ ||+++.|||++|+.|...|. +| ||+|||+|++
T Consensus 372 ~~~~vG~p~~~~~v~i~d-~~g~~~~---~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~--~~--~~~TGDlg~~ 443 (570)
T 3c5e_A 372 KPGYMGTAASCYDVQIID-DKGNVLP---PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR--GD--FWLLGDRGIK 443 (570)
T ss_dssp CTTCCCEECTTCCEEEEC-TTSCBCC---TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE--TT--EEEEEEEEEE
T ss_pred CCCcccccCCCceEEEEC-CCCCCCC---CCCCCeeEEeccCCCCchhhccccCChhHhhhhhc--CC--ccccceeEEE
Confidence 468999999999999999 7788887 5689999999 99999999999999999884 67 9999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
|++|+|+|+||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|++......
T Consensus 444 d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------------ 510 (570)
T 3c5e_A 444 DEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS------------ 510 (570)
T ss_dssp CTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT------------
T ss_pred cCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC------------
Confidence 999999999999999996 7999999999999999999999999997654 348899998765310
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.....+.++|+++++ ..|+.|++|+.|++++++| +|++||++|++|++++.+
T Consensus 511 --------~~~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 511 --------HDPEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp --------SCHHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred --------cchHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 001123567888887 7899999999999999999 999999999999998854
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=275.02 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc-----CCCeeeeeccEEEEe
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE-----EGKRWFRTGDIGELH 77 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~-----~g~~~~~TGDl~~~~ 77 (228)
..++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|.+.|..+ +|.+||+|||+|++|
T Consensus 382 ~~~iG~p~~~~~v~i~d-~~~~~~~---~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d 457 (570)
T 4gr5_A 382 ALPIGVPLAGKRAYVLD-DDLKPAA---NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRR 457 (570)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEEC
T ss_pred ccccceeeCCCEEEEEC-CCCCCCC---CCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEEC
Confidence 45799999999999999 7888887 56899999999999999999999999888532 345699999999999
Q ss_pred eCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 78 QDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 78 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++......
T Consensus 458 ~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~------------- 523 (570)
T 4gr5_A 458 ADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP------------- 523 (570)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-------------
Confidence 99999999999999997 8999999999999999999999999997654 348888887643211
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
...++|+++++ ..|+.|++|..+++++++| +|++|||+|++|++.
T Consensus 524 -----------~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 -----------PDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred -----------cCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 01467888888 8899999999999999999 999999999999864
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=272.82 Aligned_cols=184 Identities=27% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+|+++++|+|++++++++ +|+.|||+|+||+++.|||++|+.|...| +.+| ||+|||+|++|++|+
T Consensus 358 ~~~~vG~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~~-~~~g--~~~TGDl~~~~~dG~ 431 (550)
T 3rix_A 358 KPGAVGKVVPFFEAKVVDLDTGKTLG---VNQRGELCVRGPMIMSGYVNNPEATNALI-DKDG--WLHSGDIAYWDEDEH 431 (550)
T ss_dssp CTTEEEEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTCC
T ss_pred CCCCcccccCCcEEEEEeCCCCcCCC---CCCCeEEEEeCCCcchhhcCChhhhhhhc-CCCC--CeecCcEEEEeCCce
Confidence 56899999999999999988888887 56899999999999999999999998887 4578 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+....+
T Consensus 432 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 494 (550)
T 3rix_A 432 FFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---------------- 494 (550)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999987653 478888876543211
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcce-eEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIP-NAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p-~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
.++|.++++ ..++.+..| ..|++++++| +|++||++|++|++++.+....
T Consensus 495 ---------~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 495 ---------EKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp -------------------------------------------------------------------
T ss_pred ---------HHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence 467788887 778877655 4699999999 9999999999999999876543
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=272.58 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=159.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+|++++++++. .|+.|||+++| |+++.|||++|+.+...|.. .+| ||+|||+|++|+
T Consensus 440 ~~gs~G~p~~g~~v~i~d~~~g~~v~~--~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g--~y~TGDlg~~d~ 515 (663)
T 1ry2_A 440 KPGSASFPFFGIDAVVLDPNTGEELNT--SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDK 515 (663)
T ss_dssp CTTCCCEECTTCCEEEECSSSTTCEEC--SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT--SEEEEEEEEECT
T ss_pred CCCccccCcCCCeEEEEcCCCCCcCCC--CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC--EEEcCCEEEEcC
Confidence 578999999999999999548888873 26789999999 68999999999998887754 367 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++...... .
T Consensus 516 dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~-------~---- 583 (663)
T 1ry2_A 516 DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-------A---- 583 (663)
T ss_dssp TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------------------
T ss_pred CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc-------c----
Confidence 9999999999999997 6999999999999999999999999998764 35999999876531000 0
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
.+. ....+.++|+++++ +.++++++|..|++++++| +|++||++|++|++++.+++++
T Consensus 584 ---~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~ 641 (663)
T 1ry2_A 584 ---TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQ 641 (663)
T ss_dssp --------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC-----
T ss_pred ---cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCC
Confidence 000 00013567888888 7899999999999999999 9999999999999998776433
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=287.00 Aligned_cols=187 Identities=28% Similarity=0.416 Sum_probs=77.8
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+|+++++|+|++++++++ +|++|||+|+||+++.|||++|+.|.+.| ..+| ||+|||+|+++++|+
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~i~g~~v~~GY~~~p~~t~~~f-~~~g--~~~TGDl~~~~~dG~ 473 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLS---RNQPGEICIRGHQIMKGYLNNPAATAETI-DKDG--WLHTGDIGLIDDDDE 473 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCC---TTCCEEEEEESTTSCSEETTCHHHHHHHB-CTTS--CEEEEEEEEECTTSC
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCC---CCCccEEEEECCCccccccCChhhhhhhc-cCCC--cEEcCCEEEEcCCce
Confidence 46899999999999999988888887 56899999999999999999999999888 4677 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+||+ +|++|+|.+||.+|.+||.|.+++|++.++.. .++|+|++.+....+
T Consensus 474 l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---------------- 536 (979)
T 3tsy_A 474 LFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELS---------------- 536 (979)
T ss_dssp EEEEEESCC-----------------------------------------------------------------------
T ss_pred EEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCC----------------
Confidence 9999999999997 79999999999999999999999999876543 488888876543111
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhHhc
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRMYA 227 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~y~ 227 (228)
.++|+++++ ..|+.|++|..+++++++| +|++||++|++|+++|.+.+...|.
T Consensus 537 ---------~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~ 589 (979)
T 3tsy_A 537 ---------EDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMA 589 (979)
T ss_dssp --------------------------------------------------------------------C
T ss_pred ---------HHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCccc
Confidence 467888888 8899999999999999999 9999999999999999988877664
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=269.22 Aligned_cols=178 Identities=29% Similarity=0.417 Sum_probs=72.2
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+.++|+|+|+++++|+| +++++++ +|++|||+|+||+++.|||++|+.|...|. +| ||+|||+|+++++|+|
T Consensus 320 ~~~~G~p~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~--~g--~~~TGDl~~~~~dG~l 391 (509)
T 3ivr_A 320 PKSAGRPLFWRTVAVVD-AEDRPLP---PGEVGEIVLRGPTVFKGYWNNAAATQHAFR--NG--WHHTGDMGRFDADGYL 391 (509)
T ss_dssp TTSCCEECTTCEEEEEC-TTSCBCC---TTCCEEEEEESTTSCCEETTCHHHHHHHTG--GG--SEEEEEEEEECTTSCE
T ss_pred CCcccccCCCcEEEEEC-CCCCCCC---CCCceEEEEecCCccccccCCHHHhHHHhh--cC--CcccccEEEECCCceE
Confidence 35689999999999999 6788887 568999999999999999999999999984 77 9999999999999999
Q ss_pred EEeccC--CCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhh
Q psy8218 83 RIIDRK--KDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQL 157 (228)
Q Consensus 83 ~~~GR~--~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (228)
+|+||. +|+||+ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++.+....+
T Consensus 392 ~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~--------------- 455 (509)
T 3ivr_A 392 FYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA--------------- 455 (509)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCC---------------
Confidence 999999 999996 79999999999999999999999999987653 378888876543211
Q ss_pred cCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 158 CTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|+.|++++++| +|++|||+|++|++++++.
T Consensus 456 ----------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 456 ----------ADALAEFVA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------
T ss_pred ----------HHHHHHHHH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 467888888 8899999999999999999 9999999999999999764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=263.34 Aligned_cols=180 Identities=21% Similarity=0.359 Sum_probs=158.7
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|.|+ ++++++|+| +++++++ +|++|||+|+||++++|||++|+.|...|. ++| ||+|||+|+++++|.|
T Consensus 355 ~~~G~p~~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~-~~~--~yrTGDl~~~~~dG~l 427 (617)
T 3rg2_A 355 HTQGYPMCPDDEVWVAD-AEGNPLP---QGEVGRLMTRGPYTFRGYYKSPQHNASAFD-ANG--FYCSGDLISIDPEGYI 427 (617)
T ss_dssp HCCCEESCTTCEEEEEC-TTSCBCC---TTCCEEEEEECSSSCSCCTTCHHHHHHHBC-TTS--CEEEEEEEEECTTSCE
T ss_pred cCCCccCCCCceEEEEC-CCCCCCC---CCCceEEEecCccccchhcCChhhhhhccC-CCC--ceecCceEEEcCCceE
Confidence 4789998 788999999 7888887 568999999999999999999999999983 577 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+||+ +|++|+|.+||.+|.+||.|.+|+|++.++. ..++|++++.....
T Consensus 428 ~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------------- 487 (617)
T 3rg2_A 428 TVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLR------------------- 487 (617)
T ss_dssp EEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC-------------------
T ss_pred EEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCC-------------------
Confidence 999999999996 7999999999999999999999999987554 34888888865321
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHh
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINR 224 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~ 224 (228)
..++++++++..++.|++|..+++++++| +|++||++|++|++++.+....
T Consensus 488 --------~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 488 --------AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp --------HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence 35677888733799999999999999999 9999999999999999876543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=269.91 Aligned_cols=178 Identities=22% Similarity=0.390 Sum_probs=73.4
Q ss_pred CCccCCC-CCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 4 GRAGAPT-TVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 4 ~s~G~pl-pg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
+++|+|+ ++++++|+| +++++++ +|++|||+++||+++.|||++|+.|...| .++| ||+|||+|++|++|+|
T Consensus 360 ~~~G~p~~~~~~~~i~d-~~~~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f-~~~g--~~~TGDlg~~~~dG~l 432 (544)
T 3o83_A 360 TTQGRPISSDDEIKIVD-EQYREVP---EGEIGMLATRGPYTFCGYYQSPEHNSQVF-DEDN--YYYSGDLVQRTPDGNL 432 (544)
T ss_dssp HCCCEESCTTCEEEEEC-TTSCBCC---TTCCEEEEEECTTSCSCCTTCHHHHHHHB-CTTC--CEEEEEEEEECTTSCE
T ss_pred CCCceecCCCcEEEEEC-CCCCCCC---CCCeeEEEEecCCcchhhcCChhhhhhhC-CCCC--CeEcCCEEEEcCCCCE
Confidence 5799997 899999999 8888887 56899999999999999999999999988 3578 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++......
T Consensus 433 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~------------------ 493 (544)
T 3o83_A 433 RVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELK------------------ 493 (544)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCC------------------
Confidence 999999999995 79999999999999999999999999977653 47888887653211
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
...+++++++..++.|++|..|++++++| +|++||++|++|+++|.+.
T Consensus 494 --------~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 494 --------AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------
T ss_pred --------HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhhc
Confidence 45677788723799999999999999999 9999999999999998763
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=259.13 Aligned_cols=178 Identities=25% Similarity=0.351 Sum_probs=152.0
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+.+++|+|+|+++++|+| +++++++ +|++|||+++||+++.|||++++.|...|. +| ||+|||+|+++++|+
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~--~~--~~~TGDl~~~~~~G~ 421 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVP---DGEVGDLYIKGPSAAVMYWNNREKSRATFL--GE--WIRSGDKYCRLPNGC 421 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCC---TTSCEEEEEECTTCCCCBTTCHHHHHHHEE--TT--EEEEEEEEEECTTSC
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCC---CCCccEEEEecCCcccccCCChHHHHHhhh--cC--CcccCceEEECCCcc
Confidence 467999999999999999 7888887 568999999999999999999999999885 77 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
|+|+||.||+|++ +|++|+|.+||+.|.+||+|.+|+|++.... ..++|+|++......
T Consensus 422 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~------------------ 482 (529)
T 2v7b_A 422 YVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAP------------------ 482 (529)
T ss_dssp EEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCC------------------
T ss_pred EEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCc------------------
Confidence 9999999999997 7999999999999999999999999987322 348899988754210
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
. ..+.++|+++++ ..|+.|++|+.+++++++| +|++||++|++|+++
T Consensus 483 -~---~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 483 -S---EILAEELKAFVK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLREQ 529 (529)
T ss_dssp -C---HHHHHHHHHHHH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC-
T ss_pred -c---hhHHHHHHHHHH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhhC
Confidence 0 011457888888 8999999999999999999 999999999999863
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=255.18 Aligned_cols=171 Identities=25% Similarity=0.416 Sum_probs=133.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++++|+|+++++++|+|++ ++..|||+++||+++.|||++++.+.. | .+| ||+|||+|++|++|+
T Consensus 325 ~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~--~~g--~~~TGDl~~~~~~G~ 390 (501)
T 3ipl_A 325 RPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F--ENG--YFNTGDIAEIDHEGY 390 (501)
T ss_dssp CTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E--ETT--EEEEEEEEEECTTSC
T ss_pred CCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h--cCC--ceecCCEEEEcCCCe
Confidence 46899999999999999943 245799999999999999999999887 5 478 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
|+|+||.||+|++ +|++|+|.+||.+|.+||+|.+|+|++.++.. .+++++++.....
T Consensus 391 l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~------------------ 451 (501)
T 3ipl_A 391 VMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS------------------ 451 (501)
T ss_dssp EEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC------------------
T ss_pred EEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCC------------------
Confidence 9999999999995 79999999999999999999999999876654 3778887644321
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|+++++ ..|+.|++|..|++++++| +|++||++|++|++.+.++
T Consensus 452 ---------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 452 ---------KAQLIAYLS-KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp ---------HHHHHHHHH-HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred ---------HHHHHHHHH-hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 457788888 7799999999999999999 9999999999999988653
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=263.10 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=143.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCc-cccCCCCCCceEEEecCccCccccCCCcccccccccc--CCC--eeeeeccEEEE
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNY-RVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE--EGK--RWFRTGDIGEL 76 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~-~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~--~g~--~~~~TGDl~~~ 76 (228)
..+++|+|+++++++|+| +++++ ++ +|++|||+|+||++++|||++|+.|++.|.+. .|. +||+|||+|++
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~---~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQEIAE---PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCS---SSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCceecccCcEEEEEC-ccCCCCCC---CCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 356899999999999999 66666 44 57899999999999999999999999998642 222 69999999999
Q ss_pred eeCCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCCe--EEEEEEeCchhHHHHHHHcCCCchhh
Q psy8218 77 HQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKDY--TVALVVPNPSRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 77 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~~--~~a~v~~~~~~~~~~~~~~~~~~~~~ 154 (228)
++||+|+|+||.||+||+ +|++|+|.+||.+|.+||+|.+|+|++.++... ++++++.....
T Consensus 407 ~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~--------------- 470 (620)
T 4dg8_A 407 DEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA--------------- 470 (620)
T ss_dssp CTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC---------------
T ss_pred CCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH---------------
Confidence 999999999999999997 799999999999999999999999998765432 44444433221
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
+.+.++ +.|+.|++|..+++++++| +|++||++|++|+++|.+
T Consensus 471 ----------------~~~~l~-~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 471 ----------------SPQALL-RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ----------------CCHHHH-HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCS
T ss_pred ----------------HHHHHH-HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccc
Confidence 112333 4589999999999999999 999999999999987754
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=260.74 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
..+++|+|+++++++|++++++.+++ +|++|||+|+||+++.|||++|+.+...+. +|.+||+|||+|++|++|+
T Consensus 345 ~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~--~g~~w~~TGDlg~~d~dG~ 419 (562)
T 3ite_A 345 DTRCIGHPLGDSVAHVLAPGSNEHVK---KGMAGELVIEGSLVANGYLNRPDAKGFCDI--NGRKMYRTGDIVRMDADSS 419 (562)
T ss_dssp CTTEEEEECTTCEEEEECTTSSCBCC---TTSCEEEEEESTTSCCEESSCTTCCSEEEE--TTEEEEEEEEEEEECTTSC
T ss_pred CCccccccCCCCeEEEEeCCCCCCCC---CCCceEEEEeccccchhhCCCccccccccC--CCCEEEecCCEEEEcCCCe
Confidence 35689999999999999977777776 568999999999999999999999886654 5566999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcC-CCcceEEEEecCCCC---e-EEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTC-PVIENICVYGDSRKD---Y-TVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-~~v~~a~v~~~~~~~---~-~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+|+||.||+|++ +|++|+|.+||++|.++ +.+.+++|++.++.. . +++++.......... ...
T Consensus 420 l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~ 488 (562)
T 3ite_A 420 ILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGE----------LRW 488 (562)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred EEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccccc----------ccc
Confidence 9999999999996 79999999999999998 788888888765442 2 444444332221100 000
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccC-ccccccHHHHHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVT-AAFKLKRKDIQERYQHE 221 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t-~~gKv~R~~l~~~~~~~ 221 (228)
..+....+.++|+++++ ..|+.|++|+.|++++++| +| ++||++|++|+++|++.
T Consensus 489 ---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 489 ---INENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ------------------------------------------------------------------
T ss_pred ---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhcc
Confidence 00111223568999998 8899999999999999999 87 89999999999999763
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=276.36 Aligned_cols=176 Identities=23% Similarity=0.403 Sum_probs=156.2
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc---CCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE---EGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~---~g~~~~~TGDl~~~~~~ 79 (228)
..++|+|+++++++|+| ++++++| +|++|||+|+|+++++||+++|+.|++.|... +|.+||+|||+|++++|
T Consensus 776 ~~~iG~p~~~~~~~i~d-~~~~~~p---~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d 851 (1304)
T 2vsq_A 776 SLPIGKPISNASVYILN-EQSQLQP---FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD 851 (1304)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCC---TTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred CCCCceeeCCCEEEEEC-CCcCCCC---CCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence 46899999999999999 7888887 56899999999999999999999999988642 46789999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|.|+|+||.|++||+ +|++|+|.+||.+|.+||+|.+|+|++.++. ..++|+|++.....
T Consensus 852 G~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~---------------- 914 (1304)
T 2vsq_A 852 GTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS---------------- 914 (1304)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSC----------------
T ss_pred CeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCC----------------
Confidence 999999999999998 6999999999999999999999999987643 45999998765211
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQER 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~ 217 (228)
.++|+++++ ..||.|++|..+++++++| +|++|||+|++|.+.
T Consensus 915 -----------~~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 915 -----------AEDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP 957 (1304)
T ss_dssp -----------HHHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred -----------HHHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence 456888888 7899999999999999999 999999999988654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=242.91 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=140.1
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccccc-----CCCeeeeeccEEEEee
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE-----EGKRWFRTGDIGELHQ 78 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~-----~g~~~~~TGDl~~~~~ 78 (228)
+++|+|+++ ++|+|++++.+++ +|++|||+|+||+++.|||++|+.|+..|.+. +|.+||+|||+|++|
T Consensus 374 ~~~G~p~~~--v~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d- 447 (590)
T 3kxw_A 374 VSSGNPIQE--VKIIDPDTLIPCD---FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH- 447 (590)
T ss_dssp ECCCEESSE--EEEECTTTCCBCC---TTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-
T ss_pred eccCCCCCC--eEEEcCCCCcCCC---CCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-
Confidence 688999999 8889976688887 56899999999999999999999999888531 255699999999998
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHH-hcCCCcc--eEEEEecCCC--CeEEEEEEeCchhHHHHHHHcCCCchh
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL-KTCPVIE--NICVYGDSRK--DYTVALVVPNPSRLKEIAEKLNLDSLT 153 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~~~v~--~a~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~ 153 (228)
+|+|+|+||.||+||+ +|++|+|.+||.+| ..+|.|. +|+|++.++. ..+++++++......+
T Consensus 448 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~----------- 515 (590)
T 3kxw_A 448 ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDD----------- 515 (590)
T ss_dssp TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCH-----------
T ss_pred CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccc-----------
Confidence 9999999999999997 79999999999999 7889998 7888876543 3478888876542100
Q ss_pred hHhhcCChHHHHHHHHHHHHhhhhCCCCCCccee-EEEE--eccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 154 FQQLCTHPEIEKQVLVELQEHGKKSNLERFEIPN-AVKL--CSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~v~~--v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
...+.+.+.+++.+. . .+++|. .+++ ++++| +|++|||+|++|+++|.+
T Consensus 516 --------~~~~~l~~~l~~~l~-~---~~~~p~~~i~~v~~~~lP------~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 516 --------VAQDNLFNEIFELVY-E---NHQLEVHTIVLIPLKAMP------HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp --------HHHHHHHHHHHHHHH-H---HHSCCCCEEEEEETTCSC------CCSCHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHH-H---HcCCceeEEEEECCCccC------cCCCcHHHHHHHHHHHHc
Confidence 011222344444443 1 234443 3444 47999 999999999999999976
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-27 Score=201.60 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=119.8
Q ss_pred CCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEeccCCCeEEccCceEechHHHHHHH---
Q psy8218 33 PRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAEL--- 109 (228)
Q Consensus 33 ~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--- 109 (228)
..|++++.+|++..+|.++++.........+| ||+|||+|++|++| |+|+||.||+|++ +|++|+|.+||+.|
T Consensus 197 ~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 197 EASELYVFLPGIQYGVDERGCLHISGAVTNGQ--TVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp TCCSCEEECTTCEEEECTTSEEEEESGGGTTC--CEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHH
T ss_pred ccceeeccCCCeEEEecCcCceEEecccccCc--ceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHh
Confidence 45666666676666666666655444444577 99999999999888 6778999999996 79999999999877
Q ss_pred hcCCCcceEEEE-ecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChHHHHHHHHHHHHhhhhCCCCCCcc
Q psy8218 110 KTCPVIENICVY-GDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNLERFEI 185 (228)
Q Consensus 110 ~~~~~v~~a~v~-~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 185 (228)
.+||.|.+|+|+ +.++.. .++|+|+....... .++|+++++ ..|+.|++
T Consensus 273 ~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~--------------------------~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 273 FHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEAL--------------------------TERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHH--------------------------HHHHHHHHH-HHSCGGGS
T ss_pred ccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcC--------------------------HHHHHHHHH-hhCCCCCC
Confidence 467999998876 454443 47888877654322 467888888 78999999
Q ss_pred eeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 186 PNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 186 p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
|+.|++++++| +|++|||+|++|++++.+.
T Consensus 326 P~~i~~v~~lP------~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 326 PKHIYFAKAFA------KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp CSCEEEESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred ceEEEEECCcC------CCCCCChhHHHHHHHhhhh
Confidence 99999999999 9999999999999988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=187.89 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=115.1
Q ss_pred CccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCC----
Q psy8218 5 RAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDG---- 80 (228)
Q Consensus 5 s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G---- 80 (228)
.+|.|.+++.++|+|++++++++ +|+.|||+++|+. ...+ +++ ||+|||+|+++++|
T Consensus 257 g~~~~~~~~~v~i~d~~~g~~~~---~g~~Gel~v~~~~------------~~~~--~~~--~y~TGDl~~~~~~gc~cG 317 (436)
T 3qov_A 257 GMHFWEDCYLVEIIDPETGEPVP---EGEIGELVLTTLD------------REMM--PLI--RYRTRDLTRILPGKCPCG 317 (436)
T ss_dssp SEEECTTTEEEEEECTTTCSBCS---TTCCEEEEEEESS------------CCSS--CCC--SEEEEEEECEECSCCTTC
T ss_pred eeEEccCceEEEEEECCCCCCCC---CCCceEEEEeccC------------cCCc--eEE--EEEcCCEEEEcCCCCCCC
Confidence 35677789999999988999887 5689999999842 2223 467 99999999999998
Q ss_pred --e---EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCchhHHHHHHHcCCCch
Q psy8218 81 --V---IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNPSRLKEIAEKLNLDSL 152 (228)
Q Consensus 81 --~---l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~ 152 (228)
+ ++|.||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.++ ...++|+|++. ....
T Consensus 318 ~~~~~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~----------- 384 (436)
T 3qov_A 318 RTHLRIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLST----------- 384 (436)
T ss_dssp CCSCEECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCC-----------
T ss_pred CCccccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cccc-----------
Confidence 5 6999999999997 799999999999999999999999988654 24589999987 3210
Q ss_pred hhHhhcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEec--cCCCCCCCccCccccccHHH
Q psy8218 153 TFQQLCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLCS--EVWSPDMGLVTAAFKLKRKD 213 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v~--~~p~~~~g~~t~~gKv~R~~ 213 (228)
.+....+.+.+.+++.+ +.+ ++|..+++++ ++| +|+ ||++|..
T Consensus 385 ------~~~~~~~~l~~~l~~~l-----~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~ 430 (436)
T 3qov_A 385 ------DNYIELEKIRRDIIRQL-----KDEILVTPKVKLVKKGSLP------QSE-GKAVRVK 430 (436)
T ss_dssp ------CCHHHHHHHHHHHHHHH-----HHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred ------cchhhHHHHHHHHHHHH-----HHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence 00001122233444443 334 6777899998 999 899 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-25 Score=190.59 Aligned_cols=162 Identities=17% Similarity=0.110 Sum_probs=121.8
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC-CeE--
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD-GVI-- 82 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~-G~l-- 82 (228)
++.|.+++.++|+|++++++++ +|+.|||+++|. +...| +++ ||+|||+|+++++ |++
T Consensus 265 ~~~~~~~~~~~i~d~~~g~~~~---~G~~Gel~v~~~------------t~~~~--p~~--~y~TGDl~~~~~~cG~~~~ 325 (443)
T 2y4o_A 265 PVIWEDHFYPEIIDPVTGEVLP---DGSQGELVFTSL------------TKEAM--PVI--RYRTRDLTALLPPTARAMR 325 (443)
T ss_dssp EEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES------------SCSSS--CCS--SEEEEEEECEECCSSSSSC
T ss_pred eEEccCCeEEEEEcCCCCCCCC---CCCceEEEEeCC------------CcccC--hhh--eeecCCEEEEcCCCCCCcc
Confidence 4456789999999977888887 568999999973 22223 356 9999999999999 987
Q ss_pred ---EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCc--hhHHHHHHHcCCCchhh
Q psy8218 83 ---RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNP--SRLKEIAEKLNLDSLTF 154 (228)
Q Consensus 83 ---~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~ 154 (228)
+|+||.+|+|++ +|++|+|.+||++|.+||.|.++++++.++ ...+.|+|++.+ ....
T Consensus 326 ~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~------------- 391 (443)
T 2y4o_A 326 RLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASV------------- 391 (443)
T ss_dssp EECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTC-------------
T ss_pred ccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccc-------------
Confidence 899999999997 799999999999999999999988877532 245889998876 2100
Q ss_pred HhhcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEe--ccCCCCCCCccCccccccHHHHHH
Q psy8218 155 QQLCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLC--SEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v--~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.... .+++.++++ ..++.+ .+|..|.++ +++| +|++||++|...++
T Consensus 392 -----~~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 392 -----TDGE----RAALARELQ-HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR 440 (443)
T ss_dssp -----CHHH----HHHHHHHHH-HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred -----hhhH----HHHHHHHHH-HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence 0000 233444444 444444 477788887 5899 99999999975443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=182.02 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=120.5
Q ss_pred ccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee-CCeE--
Q psy8218 6 AGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ-DGVI-- 82 (228)
Q Consensus 6 ~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~-~G~l-- 82 (228)
++.|.+++.++|+|++++++++ +|+.|||+++|. +...+ +++ ||+|||+|++++ +|++
T Consensus 263 ~~~~~~~~~~~i~d~~~g~~~~---~g~~Gel~v~~~------------t~~~~--~~~--~y~TGDl~~~~~~~G~~~~ 323 (437)
T 2y27_A 263 PTIWEDHFYPEIIDPETGEVLP---DGELGELVFTSL------------TKEAL--PII--RYRTRDLTRLLPGTARTMR 323 (437)
T ss_dssp CEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES------------SCSSS--CCC--SEEEEEEECEECCSSSSSC
T ss_pred eeEccCceEEEEEcCCCCCCCC---CCCccEEEEecC------------CcCCc--hhh--eeecCCEEEEeCCCCCCcc
Confidence 5567789999999987888887 568999999973 22233 467 999999999998 6985
Q ss_pred ---EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCC---CCeEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 83 ---RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSR---KDYTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 83 ---~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
+|.||.+|+|++ +|++|+|.+||++|.+||.|.++++++.++ ...++|+|++.+....+
T Consensus 324 ~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~-------------- 388 (437)
T 2y27_A 324 RMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPD-------------- 388 (437)
T ss_dssp EECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTC--------------
T ss_pred ccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccch--------------
Confidence 999999999997 799999999999999999999888777432 24589999887642100
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEe--ccCCCCCCCccCccccccHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLC--SEVWSPDMGLVTAAFKLKRKD 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v--~~~p~~~~g~~t~~gKv~R~~ 213 (228)
... .+++.++++ ..++.+ .+|..|.++ +++| +|+ ||++|..
T Consensus 389 ----~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 389 ----TAA----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp ----HHH----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred ----hhh----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 000 234444454 445555 478888888 4899 888 9999864
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-18 Score=148.05 Aligned_cols=79 Identities=32% Similarity=0.467 Sum_probs=68.0
Q ss_pred CCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCcccccccc--------ccCCCeeeeeccEEE
Q psy8218 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF--------DEEGKRWFRTGDIGE 75 (228)
Q Consensus 4 ~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~--------~~~g~~~~~TGDl~~ 75 (228)
+++|+|+| ++++|+|++++++++ +|++|||+|+||+++.|||++|+.|++.|. ..++.+||+|||+|+
T Consensus 394 ~~~G~p~~-~~~~ivd~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~ 469 (480)
T 3t5a_A 394 ISYMLPRS-PIVRIVDSDTCIECP---DGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469 (480)
T ss_dssp ECEECCSS-SEEEEEETTTTEECC---TTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred eecCcccC-CEEEEEcCCCCcCCC---CCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence 48999999 999999966688887 568999999999999999999999998883 111334999999999
Q ss_pred EeeCCeEEEecc
Q psy8218 76 LHQDGVIRIIDR 87 (228)
Q Consensus 76 ~~~~G~l~~~GR 87 (228)
++ ||+|+|+||
T Consensus 470 ~d-dG~l~~~GR 480 (480)
T 3t5a_A 470 VT-DGKMFIIGR 480 (480)
T ss_dssp EE-TTEEEECC-
T ss_pred EE-CCEEEEeCC
Confidence 96 999999998
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=95.83 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=63.9
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
.|+||+|++ +|.+|+|.+||++|.+||+|.++++++.++.. .+.++|+..+.... +..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~------------------~~~ 61 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTD------------------DYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCC------------------CHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccc------------------ccc
Confidence 489999997 79999999999999999999999888865443 37888887654211 112
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEe--ccCCCCCCCccCccccccH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLC--SEVWSPDMGLVTAAFKLKR 211 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v--~~~p~~~~g~~t~~gKv~R 211 (228)
..+.+.+.+++.++ ..+ .++..+.++ +.+| +| +||++|
T Consensus 62 ~~~~l~~~i~~~l~-~~~---gv~~~v~~v~~~~lP------rt-sGKi~R 101 (109)
T 3lax_A 62 RLQALTREITRQLK-DEI---LVTPRVKLVPKGALP------KS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHH-HHH---SSCCEEEEECTTCSC------CC----CCC
T ss_pred hhhhhHHHHHHHHH-HHh---CCccceEEEcCCeec------CC-CCCcch
Confidence 22334555666554 222 123345666 4799 87 699988
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-05 Score=66.59 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=45.0
Q ss_pred CccCC------CCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee
Q psy8218 5 RAGAP------TTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 5 s~G~p------lpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~ 78 (228)
++|.| +|+++++|+|++++++++ +|++|||+|++..-.. - +. .|+|||++++.+
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp---~G~~GEl~vt~l~~~~----------~-l~------ry~tgD~~~~~~ 340 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVE---YGERGNVIVTHLSPWA----------F-YP------RVAERDTAIRLP 340 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCC---TTCEEEEEEEEEETTE----------E-EE------EEEEEEEEEEEC
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCC---CCCceEEEEEEcCccc----------c-cc------cccCCceEEEec
Confidence 48999 999999999966899887 5689999998732110 0 11 688888888754
Q ss_pred C--C-------eEEEeccCCCeEEccCc
Q psy8218 79 D--G-------VIRIIDRKKDLVKLQAG 97 (228)
Q Consensus 79 ~--G-------~l~~~GR~~d~i~~~~G 97 (228)
. | .+..++|.++..++. |
T Consensus 341 ~~~g~~~d~~~~v~~~~~~~~~~~i~-g 367 (369)
T 3hgu_A 341 GVSGFAGDRLADIEPLKISEGRKVIE-G 367 (369)
T ss_dssp CSTTCSSCEEEEEEECC-----------
T ss_pred CCCCCcCcccccceeccccCCCceee-e
Confidence 3 2 355667777766663 5
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00052 Score=61.01 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee----CCeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ----DGVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |.| -|++||+++... ...+.|+||.++++.+ .|+++...+
T Consensus 381 Ve~G~~YelViTt~~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~~ 439 (581)
T 4eql_A 381 VKLGCTYEPVVTNFA---GLY-----------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEED 439 (581)
T ss_dssp CCTTCEEEEEEECSS---SCC-----------------SEECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHHH
T ss_pred cCCCceEEEEEeecc---cee-----------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHHH
Confidence 357788889887542 222 489999999975 3579999999999997 699999999
Q ss_pred HHHHHhcC
Q psy8218 105 VEAELKTC 112 (228)
Q Consensus 105 iE~~l~~~ 112 (228)
||+++.+.
T Consensus 440 v~~al~~a 447 (581)
T 4eql_A 440 LFKAVSQA 447 (581)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999864
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00038 Score=62.10 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEee----CCeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQ----DGVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |+| -|++||+++++. ...+.|+||.++++.+ .|+++.+.+
T Consensus 393 Ve~G~~YelViTt~~---GL~-----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~Geki~~~~ 451 (609)
T 4b2g_A 393 VEVGKEYELVITTYA---GLY-----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-DSDKTDEAE 451 (609)
T ss_dssp CCTTCEEEEEEECTT---SCC-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHH
T ss_pred cCCCCeEEEehhhhh---hhh-----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEc-cccCCCHHH
Confidence 467889999996532 443 389999999974 3689999999999997 699999999
Q ss_pred HHHHHhc
Q psy8218 105 VEAELKT 111 (228)
Q Consensus 105 iE~~l~~ 111 (228)
||+++.+
T Consensus 452 v~~av~~ 458 (609)
T 4b2g_A 452 LQKAVDN 458 (609)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=58.37 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeC----CeEEEeccCCCeEEccCceEechHH
Q psy8218 29 DKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQD----GVIRIIDRKKDLVKLQAGEYVSLGK 104 (228)
Q Consensus 29 ~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~----G~l~~~GR~~d~i~~~~G~~v~~~~ 104 (228)
.+.|+.+||+|+..+ |.| -|++||+++...- ..+.|+||.++++.+ .|+++...+
T Consensus 388 ve~G~~YelviTt~~---GL~-----------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~ 446 (581)
T 4epl_A 388 VKIGEEYEVVITNYA---GLY-----------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERD 446 (581)
T ss_dssp CCTTCEEEEEEESTT---SCS-----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHH
T ss_pred cCCCCeEEEEEeecc---cee-----------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe-eeeECCHHH
Confidence 457888999997642 322 4899999998742 479999999999997 699999999
Q ss_pred HHHHHhc
Q psy8218 105 VEAELKT 111 (228)
Q Consensus 105 iE~~l~~ 111 (228)
||.++.+
T Consensus 447 v~~al~~ 453 (581)
T 4epl_A 447 LQLSVES 453 (581)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=82.55 E-value=0.59 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=29.5
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCC
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNP 52 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~ 52 (228)
..+++|.++||+.+.+.+ .|||+++|+....+|+.-.
T Consensus 197 ~~g~~~~~~pgv~~~~~~--------------~Gel~~~g~~~~~g~~~TG 233 (358)
T 4gs5_A 197 EASELYVFLPGIQYGVDE--------------RGCLHISGAVTNGQTVQTN 233 (358)
T ss_dssp TCCSCEEECTTCEEEECT--------------TSEEEEESGGGTTCCEEEE
T ss_pred ccceeeccCCCeEEEecC--------------cCceEEecccccCcceecC
Confidence 357889999999888744 6999999998887877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 228 | ||||
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 3e-31 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 5e-27 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-26 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 8e-26 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 9e-23 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-21 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-19 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 117 bits (294), Expect = 3e-31
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 41/220 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
+ G P + +R+ D +EG V GE+ + G I+ GYY N T+ +
Sbjct: 348 AKTGLPIPLVRLRVAD-EEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD- 404
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
+FRTGDI ++G + I DR KDL+K GE++S +E L P ++ V
Sbjct: 405 --GFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAI 461
Query: 123 --DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
++ +A+VVP EK EL EH K+
Sbjct: 462 PHPKWQERPLAVVVPRG--------------------------EKPTPEELNEHLLKAGF 495
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220
++++P+A E+ P T+A K ++ ++E+Y++
Sbjct: 496 AKWQLPDAYVFAEEI--P----RTSAGKFLKRALREQYKN 529
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 106 bits (264), Expect = 5e-27
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 31/230 (13%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGS--NISPGYYKNPTKTKED 58
M G A P D ++D + G + G + + + + + +KN + +
Sbjct: 416 MKPGSASFPFFGIDAVVLDPNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDT 473
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+ + ++ TGD +DG I I+ R D+V + G +S ++EA + P++
Sbjct: 474 YLNPYP-GYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAEC 531
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V G D A VV A L +I+K ++ +++
Sbjct: 532 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQ-----------DIKKHLVFTVRKD- 579
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225
+ F P + L ++ P T + K+ R+ +++ E +++
Sbjct: 580 ----IGPFAAPKLIILVDDL--P----KTRSGKIMRRILRKILAGESDQL 619
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 104 bits (259), Expect = 2e-26
Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 41/216 (18%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEE 63
G G + ++VD D G ++ GE+ + G I GY NP T D++
Sbjct: 357 GAVGKVVPFFEAKVVDLDTGKTLGVNQR---GELCVRGPMIMSGYVNNPEATNA-LIDKD 412
Query: 64 GKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG- 122
G W +GDI +D I+DR K L+K G V+ ++E+ L P I + V G
Sbjct: 413 G--WLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGL 469
Query: 123 --DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSNL 180
D + A+VV K + EK E+ ++
Sbjct: 470 PDDDAGELPAAVVVLEHG--KTMTEK-----------------------EIVDYVASQVT 504
Query: 181 ERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216
++ V EV P KL + I+E
Sbjct: 505 TAKKLRGGVVFVDEV--P----KGLTGKLDARKIRE 534
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 102 bits (256), Expect = 8e-26
Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 46/230 (20%)
Query: 4 GRAGAPTTVCDIRLVDWDEGNYRVCDKPFP---RGEILIGGS--NISPGYYKNPTKTKED 58
G A P LVD +EG+ P G ++I S + + + + ++
Sbjct: 431 GSATRPFFGVQPALVD-NEGH------PQEGATEGNLVITDSWPGQARTLFGDHERFEQT 483
Query: 59 FFDEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
+F K + +GD +DG I R D++ + +G + ++E+ L P I
Sbjct: 484 YF-STFKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEA 541
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V G + A V N E ++ E++
Sbjct: 542 AVVGIPHAIKGQAIYAYVTLNHGE----------------------EPSPELYAEVRNWV 579
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225
+K + P+ + + P T + K+ R+ +++ + + +
Sbjct: 580 RK-EIGPLATPDVLHWTDSL--P----KTRSGKIMRRILRKIAAGDTSNL 622
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 93.8 bits (232), Expect = 9e-23
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 45/221 (20%)
Query: 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD 61
+ GAP + + ++ DE GE+ IGG ++ GY+K P T + F D
Sbjct: 328 HSVPIGAP--IQNTQIYIVDENLQLK--SVGEAGELCIGGEGLARGYWKRPELTSQKFVD 383
Query: 62 ---EEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENI 118
G++ ++TGD DG I + R + VK+ G V L +VE+ L I
Sbjct: 384 NPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISET 442
Query: 119 CVYG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHG 175
V + Y A V E +L++
Sbjct: 443 AVSVHKDHQEQPYLCAYFVSEKHIPLE---------------------------QLRQFS 475
Query: 176 KKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216
+ L + IP+ ++ P +T+ K+ RK + E
Sbjct: 476 SE-ELPTYMIPSYFIQLDKM--P----LTSNGKIDRKQLPE 509
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 90.1 bits (222), Expect = 2e-21
Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 39/221 (17%)
Query: 1 MSTGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFF 60
TG AP ++R+V G + I+ + GY P T E
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 61 DEEGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICV 120
D W+RT D+ +G +RI+ R D++ GE + ++E L T P + + V
Sbjct: 378 D----GWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVV 432
Query: 121 YG---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKK 177
G A VVP E L+ D L +
Sbjct: 433 IGLADQRWGQSVTACVVPRLG------ETLSAD-------------------ALDTFCRS 467
Query: 178 SNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218
S L F+ P + ++ P A K+ R+ + ++
Sbjct: 468 SELADFKRPKRYFILDQL--P----KNALNKVLRRQLVQQV 502
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 83.9 bits (206), Expect = 2e-19
Identities = 47/223 (21%), Positives = 77/223 (34%), Gaps = 42/223 (18%)
Query: 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDE 62
G P + D V D KP G +L G GYYK F +
Sbjct: 350 VNTQGKPMSPYDESRVWDDHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE- 405
Query: 63 EGKRWFRTGDIGELHQDGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYG 122
++RTGDI L +DG I + R KD + GE V+ +VE L P + + +
Sbjct: 406 --DGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVS 462
Query: 123 ---DSRKDYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPEIEKQVLVELQEHGKKSN 179
+ + ++P K EL+ ++
Sbjct: 463 MPDQFLGERSCVFIIPRDEAPKA--------------------------AELKAFLRERG 496
Query: 180 LERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEI 222
L ++IP+ V+ P T K+ +K ++E ++
Sbjct: 497 LAAYKIPDRVEFVESF--P----QTGVGKVSKKALREAISEKL 533
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.96 |
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=3.6e-37 Score=270.30 Aligned_cols=181 Identities=27% Similarity=0.367 Sum_probs=145.3
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCe
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGV 81 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~ 81 (228)
+++|+|+|+||++++|+|+|+++.++ +|++|||+++|++++.||+++++.+...+ ..+| ||+|||+|+++++|.
T Consensus 355 ~~~svG~p~~~~~~~i~d~d~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~~~--~~~TGDl~~~~~~G~ 428 (541)
T d1lcia_ 355 KPGAVGKVVPFFEAKVVDLDTGKTLG---VNQRGELCVRGPMIMSGYVNNPEATNALI-DKDG--WLHSGDIAYWDEDEH 428 (541)
T ss_dssp -CCCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTBHHHHHHHB-CTTS--CEEEEEEEEECTTCC
T ss_pred CCCccccccCCCEEEEEECCCCcCCC---CCCeEEEEEccCccCCeeCCChhhhhhcc-cCCc--cccCCCeeEEcCCeE
Confidence 57899999999999999988899887 56899999999999999999988777665 3567 999999999999999
Q ss_pred EEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhc
Q psy8218 82 IRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLC 158 (228)
Q Consensus 82 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
+++.||.+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++. ..++|+|++++....+
T Consensus 429 ~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---------------- 491 (541)
T d1lcia_ 429 FFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---------------- 491 (541)
T ss_dssp EEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC----------------
T ss_pred EEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCC----------------
Confidence 9999999999996 7999999999999999999999999987544 2488999987643110
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCC-cceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 159 THPEIEKQVLVELQEHGKKSNLERF-EIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
.++|.++++ ..++++ ++|..|++++++| +|++|||+|++|++++.++
T Consensus 492 ---------~~~l~~~~~-~~l~~~~~~p~~i~~v~~lP------~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 492 ---------EKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKA 539 (541)
T ss_dssp ---------HHHHHHHHH-HHSCGGGSCTTEEEEESSCC------C-----CCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHH-HhCCccccCCcEEEEeCCCC------cCCCcCccHHHHHHHHHHh
Confidence 345667777 555555 5799999999999 9999999999999998763
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.9e-38 Score=274.25 Aligned_cols=179 Identities=30% Similarity=0.503 Sum_probs=124.3
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
++++|.|+||++++|+| +++++++.+ .++.|||+++||+++.||+++++.+...| ..+| ||+|||+|+++++|+|
T Consensus 347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~-~~~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~dg--~~~TGDlg~~~~~G~l 421 (534)
T d1v25a_ 347 KAKTGLPIPLVRLRVAD-EEGRPVPKD-GKALGEVQLKGPWITGGYYGNEEATRSAL-TPDG--FFRTGDIAVWDEEGYV 421 (534)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSS-SCCCEEEEEESTTSBSSCBTCHHHHHTTB-CTTS--CEEEEEEEEECTTCCE
T ss_pred cccceeccCCcEEEEEC-CCCCCCCCC-CCeeEEEEEcCCcccceecCChhhhhhhc-ccCC--CCccCceeEECCCccE
Confidence 47899999999999999 788888764 56799999999999999999999998887 4678 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.. .++|+|++......
T Consensus 422 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~------------------ 482 (534)
T d1v25a_ 422 EIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT------------------ 482 (534)
T ss_dssp EEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------------
T ss_pred EEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCC------------------
Confidence 999999999996 79999999999999999999999999876543 48888888654321
Q ss_pred ChHHHHHHHHHHH-HhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQ-EHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQH 220 (228)
Q Consensus 160 ~~~~~~~~~~~l~-~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~ 220 (228)
.+++. .+++ ..++++++|..|++++++| +|++|||+|++|+++|++
T Consensus 483 --------~~~~~~~~~~-~~l~~~~~P~~i~~~~~lP------~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 483 --------PEELNEHLLK-AGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKN 529 (534)
T ss_dssp --------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred --------HHHHHHHHHH-hcCCcCCCccEEEEECCCC------CCCCccccHHHHHHHHHh
Confidence 22333 3455 7899999999999999999 999999999999999865
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=6.7e-37 Score=275.58 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=160.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+| ++|++++ +|+.|||+|+| |+++.+||++++.+.+.+.. .+| ||+|||+|++|+
T Consensus 429 ~~gs~G~p~~g~~v~ivd-~~g~~~~---~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~ 502 (643)
T d1pg4a_ 429 KAGSATRPFFGVQPALVD-NEGHPQE---GATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDE 502 (643)
T ss_dssp CTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT--SEEEEEEEEECT
T ss_pred CCCccccccCCCEEEEEC-CCCCCCC---CCceEEEEEecCCCcccccccCChhhchhhhcccCCC--eEEcCCEEEECC
Confidence 578999999999999999 7888876 56899999999 67999999999888776542 467 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|||++++....
T Consensus 503 dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~-------------- 567 (643)
T d1pg4a_ 503 DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP-------------- 567 (643)
T ss_dssp TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC--------------
T ss_pred CceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCC--------------
Confidence 9999999999999996 79999999999999999999999999976543 59999999875311
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHE 221 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~ 221 (228)
..++.++|+++++ .+|+++++|+.|++++++| +|++|||+|++|++++..+
T Consensus 568 --------~~~~~~~i~~~~~-~~L~~~~vP~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 568 --------SPELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp --------CHHHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC
T ss_pred --------CHHHHHHHHHHHH-hhCCcccCccEEEEECCCC------CCCCcCccHHHHHHHhcCC
Confidence 1223567888888 7899999999999999999 9999999999999999764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-37 Score=275.65 Aligned_cols=197 Identities=20% Similarity=0.283 Sum_probs=157.6
Q ss_pred CCCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEec--CccCccccCCCccccccccc-cCCCeeeeeccEEEEee
Q psy8218 2 STGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG--SNISPGYYKNPTKTKEDFFD-EEGKRWFRTGDIGELHQ 78 (228)
Q Consensus 2 ~~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g--p~~~~gY~~~~~~~~~~~~~-~~g~~~~~TGDl~~~~~ 78 (228)
+++++|+|+||++++|+|++++..++. .+..|||+++| |+++.|||++++.+.+.|.+ .+| ||+|||+|++|+
T Consensus 417 ~~gs~G~p~~g~~~~i~d~~~~~~~~~--~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~g--w~~TGDlg~~d~ 492 (640)
T d1ry2a_ 417 KPGSASFPFFGIDAVVLDPNTGEELNT--SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDK 492 (640)
T ss_dssp CTTCCCEECTTCCEEEECSSSTTCEEC--SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT--SEEEEEEEEECT
T ss_pred CCcccccccCCceEEEEeCCCCcccCC--CCceEEEEEEecCCCcccccccCHHHHHhhhccCCCC--eEEcCCceeECC
Confidence 578999999999999999655555543 34679999998 68999999999999887754 357 999999999999
Q ss_pred CCeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhH
Q psy8218 79 DGVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQ 155 (228)
Q Consensus 79 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
+|+|+|+||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++.. .++|+|++++.......
T Consensus 493 dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~----------- 560 (640)
T d1ry2a_ 493 DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA----------- 560 (640)
T ss_dssp TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------------------
T ss_pred CCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCcccc-----------
Confidence 9999999999999996 79999999999999999999999999987653 49999999876432100
Q ss_pred hhcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHHhH
Q psy8218 156 QLCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEINRM 225 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~~~ 225 (228)
..+....+.++|.++++ +.|+++++|+.|++++++| +|++|||+|++|++++.++..++
T Consensus 561 ----~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~~~~~ 619 (640)
T d1ry2a_ 561 ----TDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQL 619 (640)
T ss_dssp --------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC------
T ss_pred ----chHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCCC------CCCCcCccHHHHHHHHhCCcccc
Confidence 00111223567888888 7899999999999999999 99999999999999997765544
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.1e-34 Score=252.10 Aligned_cols=182 Identities=26% Similarity=0.398 Sum_probs=157.0
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeE
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVI 82 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l 82 (228)
.+++|.|+++....++..++++.++ +++.|||+++|++++.||++++..+...+ ..+| ||+|||++++++||+|
T Consensus 350 ~~~~g~p~~~~~~~~v~~~~g~~~~---~~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~~~--~~~tGD~~~~~~dG~l 423 (536)
T d1mdba_ 350 VNTQGKPMSPYDESRVWDDHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASF-TEDG--FYRTGDIVRLTRDGYI 423 (536)
T ss_dssp HHCCCEESSTTCEEEEECTTSCBCC---TTCCEEEEEECTTSCSSCTTCHHHHHHHB-CTTS--CEEEEEEEEECTTSCE
T ss_pred cCCcccCCCCcceEEEEcCCCCeec---ccccceeecCCCccccccccccccccccc-cccC--ccccCccccccCCCce
Confidence 4689999976666565558888887 56899999999999999999998877766 3567 9999999999999999
Q ss_pred EEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHhhcC
Q psy8218 83 RIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQLCT 159 (228)
Q Consensus 83 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (228)
+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.. .++|+|++.+....
T Consensus 424 ~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~------------------ 484 (536)
T d1mdba_ 424 VVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK------------------ 484 (536)
T ss_dssp EEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCC------------------
T ss_pred ecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCC------------------
Confidence 999999999996 79999999999999999999999999865443 48999998765321
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHHHHHHH
Q psy8218 160 HPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERYQHEIN 223 (228)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~~~~i~ 223 (228)
.++|+++++++.++++++|+.|++++++| +|++|||+|++|+++|+++|.
T Consensus 485 --------~~~l~~~l~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 485 --------AAELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp --------HHHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCcCcCccEEEEECCCC------cCCCcCccHHHHHHHHHHHHh
Confidence 45677777745799999999999999999 999999999999999998775
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.4e-34 Score=251.13 Aligned_cols=175 Identities=28% Similarity=0.420 Sum_probs=153.0
Q ss_pred CCCccCCCCCceEEEEeCCCCCccccCCCCCCceEEEecCccCccccCCCccccccccc---cCCCeeeeeccEEEEeeC
Q psy8218 3 TGRAGAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGGSNISPGYYKNPTKTKEDFFD---EEGKRWFRTGDIGELHQD 79 (228)
Q Consensus 3 ~~s~G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~gp~~~~gY~~~~~~~~~~~~~---~~g~~~~~TGDl~~~~~~ 79 (228)
.++.|.+++++.+.+.| ++++.++ +|+.|||+|+||+++.|||+++..+...|.. .++.+||+|||+|++|++
T Consensus 329 ~~~~~~~~~~~~v~~~d-~~~~~~~---~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~ 404 (514)
T d1amua_ 329 SVPIGAPIQNTQIYIVD-ENLQLKS---VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD 404 (514)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred ccccccceeeeeEeeec-ccceecC---CCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCC
Confidence 46788999999999999 8888887 5689999999999999999999887776642 233459999999999999
Q ss_pred CeEEEeccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCCC---eEEEEEEeCchhHHHHHHHcCCCchhhHh
Q psy8218 80 GVIRIIDRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRKD---YTVALVVPNPSRLKEIAEKLNLDSLTFQQ 156 (228)
Q Consensus 80 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
|+|+|+||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.. .++|+|+++.+..
T Consensus 405 G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~---------------- 467 (514)
T d1amua_ 405 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP---------------- 467 (514)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC----------------
T ss_pred CcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCC----------------
Confidence 999999999999996 79999999999999999999999999976543 5899998877532
Q ss_pred hcCChHHHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHH
Q psy8218 157 LCTHPEIEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQE 216 (228)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~ 216 (228)
.++|+++++ ..|+++++|..|++++++| +|++|||+|++|++
T Consensus 468 -----------~~~l~~~~~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 468 -----------LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPE 509 (514)
T ss_dssp -----------HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCC
T ss_pred -----------HHHHHHHHH-hhCCcccCceEEEEeCCCC------CCCCcChhHHhcCC
Confidence 356777777 7799999999999999999 99999999999875
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.96 E-value=1.8e-29 Score=217.97 Aligned_cols=172 Identities=23% Similarity=0.391 Sum_probs=140.1
Q ss_pred cCCCCCceEEEEeCCCCCccccCCCCCCceEEEec-CccCccccCCCccccccccccCCCeeeeeccEEEEeeCCeEEEe
Q psy8218 7 GAPTTVCDIRLVDWDEGNYRVCDKPFPRGEILIGG-SNISPGYYKNPTKTKEDFFDEEGKRWFRTGDIGELHQDGVIRII 85 (228)
Q Consensus 7 G~plpg~~~~i~~~~~~~~~~~~~~g~~Gel~i~g-p~~~~gY~~~~~~~~~~~~~~~g~~~~~TGDl~~~~~~G~l~~~ 85 (228)
+.+.+.....+.+ ..++.++ .|+.|++.+.+ +..+.+|+++++.+.+.| .+| ||+|||+|+++++|.|+++
T Consensus 327 ~~~~~~~~~~~~~-~~~~~~~---~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~--~~g--~~~TgD~g~~~~dG~l~~~ 398 (503)
T d3cw9a1 327 GFFSEVRIVRIGG-GVDEIVA---NGEEGELIVAASDSAFVGYLNQPQATAEKL--QDG--WYRTSDVAVWTPEGTVRIL 398 (503)
T ss_dssp CTTCCEEEECTTS-CTTCBCC---TTCCEEEEEECCTTSCCCBTTCHHHHHHHE--ETT--EEEEEEEEEECTTSCEEEE
T ss_pred cccccceeeeeec-ccCcccC---CCccccccccccccccccccCChhhhHHHh--cCC--ceecccccccccCCeEEeC
Confidence 3344444444443 5556555 56789887765 667788999998888877 478 9999999999999999999
Q ss_pred ccCCCeEEccCceEechHHHHHHHhcCCCcceEEEEecCCC---CeEEEEEEeCchhHHHHHHHcCCCchhhHhhcCChH
Q psy8218 86 DRKKDLVKLQAGEYVSLGKVEAELKTCPVIENICVYGDSRK---DYTVALVVPNPSRLKEIAEKLNLDSLTFQQLCTHPE 162 (228)
Q Consensus 86 GR~~d~i~~~~G~~v~~~~iE~~l~~~~~v~~a~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (228)
||.+|+|++ +|++|+|.+||+.|.+||+|.+|+|++.++. +.++|+|+++......
T Consensus 399 GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~-------------------- 457 (503)
T d3cw9a1 399 GRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS-------------------- 457 (503)
T ss_dssp EESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC--------------------
T ss_pred CCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCC--------------------
Confidence 999999997 7999999999999999999999999987654 2589999987653211
Q ss_pred HHHHHHHHHHHhhhhCCCCCCcceeEEEEeccCCCCCCCccCccccccHHHHHHHH
Q psy8218 163 IEKQVLVELQEHGKKSNLERFEIPNAVKLCSEVWSPDMGLVTAAFKLKRKDIQERY 218 (228)
Q Consensus 163 ~~~~~~~~l~~~~~~~~l~~~~~p~~v~~v~~~p~~~~g~~t~~gKv~R~~l~~~~ 218 (228)
.++|+++++...++++++|..|++++++| +|++|||+|++|++++
T Consensus 458 -----~~~l~~~~~~~~l~~~~~P~~i~~v~~~P------~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 458 -----ADALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQV 502 (503)
T ss_dssp -----HHHHHHHHHHSSSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCCCCCccEEEEECCCC------cCCCcCccHHHHHHhc
Confidence 45677777547899999999999999999 9999999999999875
|