Psyllid ID: psy8271

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MYTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV
Secondary Structure (PSIPRED)
cccHHccEEcHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHEccHHHHHHHHHHHHHHHccccccccccccEEEEEEccHHHHHHHHHccccccEEEcc
Coil and Loop (DISEMBL)
MYTQEAEFYNIAELVRLIKDrictrdslsvkdankKHVYRVIQCHEDELTQMVSTmsdgwkfeqv
Flexible Loop (DISEMBL)
mytqeaefYNIAELVRLIKDRICTrdslsvkdankkhVYRVIQCHEDELTQMVstmsdgwkfeqv
Low Complexity Region (SEG)
MYTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV
Disordered region (IsUnstruct)
******EFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQM*************
Disordered Region (DISOPRED)
*YTQEAEFYNIAELVRLIKDR******************RVIQCHE***********D*W*FEQV
Disordered Region (DISEMBL)
MYTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV
Disordered Region (DISPRO)
MYTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q8N5Z5	321	BTB/POZ domain-containing	yes	N/A	0.938	0.190	0.645	9e-18
Q8VC57	234	BTB/POZ domain-containing	yes	N/A	0.938	0.260	0.661	1e-17
Q14681	263	BTB/POZ domain-containing	no	N/A	0.923	0.228	0.682	2e-17
Q9NXV2	234	BTB/POZ domain-containing	no	N/A	0.938	0.260	0.661	2e-17
A5PKG7	234	BTB/POZ domain-containing	no	N/A	0.938	0.260	0.661	2e-17
B5DEL1	234	BTB/POZ domain-containing	no	N/A	0.938	0.260	0.661	3e-17
Q8CEZ0	266	BTB/POZ domain-containing	no	N/A	0.892	0.218	0.688	2e-16

>sp|Q8N5Z5|KCD17_HUMAN BTB/POZ domain-containing protein KCTD17 OS=Homo sapiens GN=KCTD17 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L+R+IKDR+  +D  +V     KHVYRV+QC E+ELTQMVSTMSDGW+FE
Sbjct: 110 EEAEFYNIGPLIRIIKDRMEEKD-YTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 168

Query: 64  QV 65
           Q+
Sbjct: 169 QL 170

Homo sapiens (taxid: 9606)

>sp|Q8VC57|KCTD5_MOUSE BTB/POZ domain-containing protein KCTD5 OS=Mus musculus GN=Kctd5 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS  +     KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-RISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query: 64  QV 65
           Q+
Sbjct: 183 QL 184

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Mus musculus (taxid: 10090)

>sp|Q14681|KCTD2_HUMAN BTB/POZ domain-containing protein KCTD2 OS=Homo sapiens GN=KCTD2 PE=1 SV=3

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 51/63 (80%), Gaps = 3/63 (4%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLS-VKDANKKHVYRVIQCHEDELTQMVSTMSDGWKF 62
           +EAEFYNIA LVRL+K+RI  RD+ +       KHVYRV+QC E+ELTQMVSTMSDGWKF
Sbjct: 153 EEAEFYNIASLVRLVKERI--RDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKF 210

Query: 63  EQV 65
           EQ+
Sbjct: 211 EQL 213

Homo sapiens (taxid: 9606)

>sp|Q9NXV2|KCTD5_HUMAN BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens GN=KCTD5 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query: 64  QV 65
           Q+
Sbjct: 183 QL 184

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Homo sapiens (taxid: 9606)

>sp|A5PKG7|KCTD5_BOVIN BTB/POZ domain-containing protein KCTD5 OS=Bos taurus GN=KCTD5 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPLKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query: 64  QV 65
           Q+
Sbjct: 183 QL 184

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Bos taurus (taxid: 9913)

>sp|B5DEL1|KCTD5_RAT BTB/POZ domain-containing protein KCTD5 OS=Rattus norvegicus GN=Kctd5 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query: 64  QV 65
           Q+
Sbjct: 183 QL 184

Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.

Rattus norvegicus (taxid: 10116)

>sp|Q8CEZ0|KCTD2_MOUSE BTB/POZ domain-containing protein KCTD2 OS=Mus musculus GN=Kctd2 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 3/61 (4%)

Query: 6   AEFYNIAELVRLIKDRICTRDSLS-VKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQ 64
           AEFYNIA LVRL+K+RI  RD+ +       KHVYRV+QC E+ELTQMVSTMSDGWKFEQ
Sbjct: 154 AEFYNIASLVRLVKERI--RDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQ 211

Query: 65  V 65
           +
Sbjct: 212 L 212

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
91088433	211	PREDICTED: similar to AGAP000083-PA [Tri	0.938	0.289	0.758	8e-21
345494483	207	PREDICTED: BTB/POZ domain-containing pro	0.938	0.294	0.774	9e-21
380029002	215	PREDICTED: BTB/POZ domain-containing pro	0.938	0.283	0.758	2e-20
340720791	215	PREDICTED: BTB/POZ domain-containing pro	0.938	0.283	0.758	2e-20
66539089	206	PREDICTED: BTB/POZ domain-containing pro	0.938	0.296	0.758	2e-20
242017724	216	BTB/POZ domain-containing protein KCTD5,	0.938	0.282	0.725	5e-20
332020763	225	BTB/POZ domain-containing protein KCTD5	0.938	0.271	0.741	1e-19
307205441	225	BTB/POZ domain-containing protein KCTD5	0.938	0.271	0.741	1e-19
322802721	224	hypothetical protein SINV_04935 [Solenop	0.938	0.272	0.725	1e-19
307176330	225	BTB/POZ domain-containing protein KCTD5	0.938	0.271	0.725	1e-19

>gi|91088433|ref|XP_967839.1| PREDICTED: similar to AGAP000083-PA [Tribolium castaneum] gi|270012205|gb|EFA08653.1| hypothetical protein TcasGA2_TC006318 [Tribolium castaneum]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYN+AEL+ L+K+RIC RD+   KD+ KKHVYRV+QCHEDELTQMVSTMSDGWKFE
Sbjct: 102 EEAEFYNVAELITLVKERICHRDNRPSKDS-KKHVYRVLQCHEDELTQMVSTMSDGWKFE 160

Query: 64  QV 65
           Q+
Sbjct: 161 QL 162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494483|ref|XP_001604391.2| PREDICTED: BTB/POZ domain-containing protein KCTD5-like [Nasonia vitripennis]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RLIK+RI  RD+  ++D+ KKHVYRVIQCHEDELTQMVSTMSDGWKFE
Sbjct: 105 EEAEFYNITELIRLIKERIILRDTRPIRDS-KKHVYRVIQCHEDELTQMVSTMSDGWKFE 163

Query: 64  QV 65
           Q+
Sbjct: 164 QL 165

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029002|ref|XP_003698172.1| PREDICTED: BTB/POZ domain-containing protein KCTD5-like [Apis florea]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+  ++D+ KKHVYRVIQCHEDELTQMVSTMSDGWKFE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPLRDS-KKHVYRVIQCHEDELTQMVSTMSDGWKFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720791|ref|XP_003398813.1| PREDICTED: BTB/POZ domain-containing protein KCTD5-like [Bombus terrestris] gi|350398077|ref|XP_003485080.1| PREDICTED: BTB/POZ domain-containing protein KCTD5-like [Bombus impatiens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+  ++D+ KKHVYRVIQCHEDELTQMVSTMSDGWKFE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPLRDS-KKHVYRVIQCHEDELTQMVSTMSDGWKFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66539089|ref|XP_624856.1| PREDICTED: BTB/POZ domain-containing protein KCTD5-like, partial [Apis mellifera]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+  ++D+ KKHVYRVIQCHEDELTQMVSTMSDGWKFE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPLRDS-KKHVYRVIQCHEDELTQMVSTMSDGWKFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017724|ref|XP_002429337.1| BTB/POZ domain-containing protein KCTD5, putative [Pediculus humanus corporis] gi|212514240|gb|EEB16599.1| BTB/POZ domain-containing protein KCTD5, putative [Pediculus humanus corporis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 57/62 (91%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL++L+K+RIC RD+  ++D+ KKHVYRV+QCHEDE+TQMVSTMSDGWKFE
Sbjct: 105 EEAEFYNITELIKLVKERICLRDTHVLRDS-KKHVYRVLQCHEDEVTQMVSTMSDGWKFE 163

Query: 64  QV 65
           Q+
Sbjct: 164 QL 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020763|gb|EGI61167.1| BTB/POZ domain-containing protein KCTD5 [Acromyrmex echinatior]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+   +D+ KKHVYRVIQCHEDELTQMVSTMSDGW+FE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPQRDS-KKHVYRVIQCHEDELTQMVSTMSDGWRFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205441|gb|EFN83773.1| BTB/POZ domain-containing protein KCTD5 [Harpegnathos saltator]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RLIK+RI  RD+   +D+ KKHVYRV+QCHEDELTQMVST+SDGWKFE
Sbjct: 104 EEAEFYNITELIRLIKERIILRDTRPQRDS-KKHVYRVLQCHEDELTQMVSTLSDGWKFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802721|gb|EFZ22938.1| hypothetical protein SINV_04935 [Solenopsis invicta]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+   +D+ KKHVYRV+QCHEDELTQMVSTMSDGW+FE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPQRDS-KKHVYRVLQCHEDELTQMVSTMSDGWRFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176330|gb|EFN65948.1| BTB/POZ domain-containing protein KCTD5 [Camponotus floridanus]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 55/62 (88%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI EL+RL+K+RI  RD+   +D+ KKHVYRV+QCHEDELTQMVSTMSDGW+FE
Sbjct: 104 EEAEFYNITELIRLVKERIILRDTRPQRDS-KKHVYRVLQCHEDELTQMVSTMSDGWRFE 162

Query: 64  QV 65
           Q+
Sbjct: 163 QL 164

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
UNIPROTKB|F1P1F0	184	KCTD5 "Uncharacterized protein	0.938	0.331	0.661	3.6e-18
MGI|MGI:1916509	234	Kctd5 "potassium channel tetra	0.938	0.260	0.661	5.8e-18
UNIPROTKB|A5PKG7	234	KCTD5 "BTB/POZ domain-containi	0.938	0.260	0.661	7.5e-18
UNIPROTKB|F1Q2Y4	234	KCTD5 "Uncharacterized protein	0.938	0.260	0.661	7.5e-18
UNIPROTKB|Q9NXV2	234	KCTD5 "BTB/POZ domain-containi	0.938	0.260	0.661	7.5e-18
UNIPROTKB|F1SUH5	155	KCTD5 "Uncharacterized protein	0.938	0.393	0.661	7.5e-18
UNIPROTKB|F1SUH6	159	KCTD5 "Uncharacterized protein	0.938	0.383	0.661	7.5e-18
RGD|1304990	234	Kctd5 "potassium channel tetra	0.938	0.260	0.661	9.5e-18
UNIPROTKB|E1C8D9	216	KCTD17 "Uncharacterized protei	0.938	0.282	0.645	2.5e-17
UNIPROTKB|Q5ZJ62	247	KCTD2 "Uncharacterized protein	0.923	0.242	0.682	2.5e-17

UNIPROTKB|F1P1F0 KCTD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 41/62 (66%), Positives = 50/62 (80%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS  +     KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-KISQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

MGI|MGI:1916509 Kctd5 "potassium channel tetramerisation domain containing 5" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/62 (66%), Positives = 50/62 (80%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS  +     KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-RISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|A5PKG7 KCTD5 "BTB/POZ domain-containing protein KCTD5" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPLKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0005829 "cytosol" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1Q2Y4 KCTD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q9NXV2 KCTD5 "BTB/POZ domain-containing protein KCTD5" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1SUH5 KCTD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:    40 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 98

Query:    64 QV 65
             Q+
Sbjct:    99 QL 100

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|F1SUH6 KCTD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:    49 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 107

Query:    64 QV 65
             Q+
Sbjct:   108 QL 109

GO:0051260 "protein homooligomerization" evidence=IEA

RGD|1304990 Kctd5 "potassium channel tetramerisation domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct:   124 EEAEFYNITSLIKLVKDKIRERDS-KTSQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182

Query:    64 QV 65
             Q+
Sbjct:   183 QL 184

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|E1C8D9 KCTD17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/62 (64%), Positives = 50/62 (80%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
             +EAEFYNI  L+R+IKDR+  +D  +V     KHVYRV+QC E+ELTQMVSTMSDGW+FE
Sbjct:   106 EEAEFYNIGPLIRIIKDRLEEKD-YTVAQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 164

Query:    64 QV 65
             Q+
Sbjct:   165 QL 166

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5ZJ62 KCTD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 43/63 (68%), Positives = 51/63 (80%)

Query:     4 QEAEFYNIAELVRLIKDRICTRDSLS-VKDANKKHVYRVIQCHEDELTQMVSTMSDGWKF 62
             +EAEFYNIA LVRL+K+RI  RD+ +       KHVYRV+QC E+ELTQMVSTMSDGWKF
Sbjct:   137 EEAEFYNIASLVRLVKERI--RDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKF 194

Query:    63 EQV 65
             EQ+
Sbjct:   195 EQL 197

GO:0051260 "protein homooligomerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VC57	KCTD5_MOUSE	No assigned EC number	0.6612	0.9384	0.2606	yes	N/A
Q8N5Z5	KCD17_HUMAN	No assigned EC number	0.6451	0.9384	0.1900	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG2715|consensus	210		100.0
KOG2716|consensus	230		95.88

>KOG2715|consensus

Probab=100.00  E-value=1.7e-36  Score=218.48  Aligned_cols=63  Identities=62%  Similarity=0.994  Sum_probs=61.8

Q ss_pred             ccccccccChHHHHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhhhhhcCCCcccccC
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV   65 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~mvStmSdgWkfeQL   65 (65)
                      |||||||||+++||+||||||++||++++|. +.|||||||||||+|||||+|||||||||+||
T Consensus        98 vL~EAefyn~~~li~likd~i~dRd~~~tq~-~~k~vyrvLqcqeeeltqmvStmsDgw~~~ql  160 (210)
T KOG2715|consen   98 VLEEAEFYNDPSLIQLIKDRIQDRDAMVTQE-ADKFVYRVLQCQEEELTQMVSTMSDGWKIEQL  160 (210)
T ss_pred             cchhhhccCChHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence            7999999999999999999999999999999 99999999999999999999999999999996

>KOG2716|consensus

Probab=95.88  E-value=0.0038  Score=45.83  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             ccccccccChHHHHHHHHHhhhhhc
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTRD   26 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~erd   26 (65)
                      ++.||+||.+..||.+|+.+|....
T Consensus        81 l~~EA~fYlL~~Lv~~C~~~i~~~~  105 (230)
T KOG2716|consen   81 LLREAEFYLLDGLVELCQSAIARLI  105 (230)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhcc
Confidence            5789999999999999999987664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	65
3drx_A	202	X-Ray Crystal Structure Of Human Kctd5 Protein Crys		1e-18

>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 92  EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 150
Query: 64  QV 65
           Q+
Sbjct: 151 QL 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	1e-16
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	6e-04

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score = 68.8 bits (168), Expect = 1e-16
 Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 4   QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
           +EAEFYNI  L++L+KD+I  RDS        KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 92  EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 150

Query: 64  QV 65
           Q+
Sbjct: 151 QL 152

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 33.8 bits (78), Expect = 6e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 4   QEAEFYNIAELVRLIKDRICTR 25
           +EAEFYNI  L++L+KD+I  R
Sbjct: 86  EEAEFYNITSLIKLVKDKIRER 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	99.97
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.33
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	88.07
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	87.73
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	84.98
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	84.6
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	80.76

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=99.97  E-value=6.3e-33  Score=195.75  Aligned_cols=63  Identities=65%  Similarity=1.036  Sum_probs=61.2

Q ss_pred             ccccccccChHHHHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhhhhhcCCCcccccC
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV   65 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~mvStmSdgWkfeQL   65 (65)
                      +++||+||+|++|+++|++||++|+.+.+|+ ++|||||||||||+||||||||||||||||||
T Consensus        90 l~eEA~FygL~~Lv~~l~~~i~ere~~~~~~-~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~  152 (202)
T 3drx_A           90 VLEEAEFYNITSLIKLVKDKIRERDSKTSQV-PVKHVYRVLQCQEEELTQMVSTMSDGWKFEQL  152 (202)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCC-SCCCEEEEEEECSTHHHHHHHTCCTTCEEEEE
T ss_pred             HHHHHHHCCcHHHHHHHHHHHHHHhcccccC-CCcceeeeeeCCHHHHHHHHHhhccccChhhe
Confidence            4799999999999999999999999999998 99999999999999999999999999999996

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.33  E-value=9.6e-08  Score=59.36  Aligned_cols=24  Identities=54%  Similarity=0.919  Sum_probs=22.7

Q ss_pred             ccccccccChHHHHHHHHHhhhhh
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTR   25 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~er   25 (65)
                      +++||+||+|++|+++|++||+||
T Consensus        84 l~~Ea~fy~l~~L~~~l~~~i~~~  107 (107)
T 3drz_A           84 VLEEAEFYNITSLIKLVKDKIRER  107 (107)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcC
Confidence            579999999999999999999987

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=88.07  E-value=0.079  Score=33.85  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=16.6

Q ss_pred             ccccccccChHHHH--HHHHHhhhhh
Q psy8271           2 YTQEAEFYNIAELV--RLIKDRICTR   25 (65)
Q Consensus         2 VLEEAEFYNI~~LI--~likdri~er   25 (65)
                      +++||+||.|++|+  .-|.++.+++
T Consensus        87 l~~Ea~fy~i~~l~l~~cC~~~~~~~  112 (124)
T 1s1g_A           87 YDDELAFYGILPEIIGDCCYEEYKDR  112 (124)
T ss_dssp             HHHHHHHTTCCGGGBCHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            47999999999984  3344444433

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=87.73  E-value=0.076  Score=32.81  Aligned_cols=14  Identities=29%  Similarity=0.762  Sum_probs=12.2

Q ss_pred             ccccccccChHHHH
Q psy8271           2 YTQEAEFYNIAELV   15 (65)
Q Consensus         2 VLEEAEFYNI~~LI   15 (65)
                      +++||+||.|++++
T Consensus        77 ~~~Ea~fy~i~~~~   90 (100)
T 1t1d_A           77 FSEEIKFYELGENA   90 (100)
T ss_dssp             HHHHHHHTTCCHHH
T ss_pred             HHHHHHHcCCCHHH
Confidence            47999999999865

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=84.98  E-value=0.25  Score=30.00  Aligned_cols=25  Identities=12%  Similarity=0.023  Sum_probs=19.1

Q ss_pred             ccccccccChHHHHHHHHHhhhhhc
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTRD   26 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~erd   26 (65)
                      +|+-|++|.|..|.+.|.+.+++|+
T Consensus        95 ll~aA~~l~i~~l~~~C~~~~~~~~  119 (119)
T 3m5b_A           95 LQEAARALGVQSLEEACWRARGDRA  119 (119)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC----
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcC
Confidence            4677999999999999999998774

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=84.60  E-value=0.088  Score=33.18  Aligned_cols=14  Identities=21%  Similarity=0.534  Sum_probs=12.2

Q ss_pred             ccccccccChHHHH
Q psy8271           2 YTQEAEFYNIAELV   15 (65)
Q Consensus         2 VLEEAEFYNI~~LI   15 (65)
                      +++||+||+|+++.
T Consensus        80 ~~~Ea~fy~i~~~~   93 (115)
T 3kvt_A           80 FEEELEFWGLDSNQ   93 (115)
T ss_dssp             HHHHHHHHTCCGGG
T ss_pred             HHHHHHHhCCChHH
Confidence            57999999999974

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=80.76  E-value=0.14  Score=33.46  Aligned_cols=14  Identities=36%  Similarity=0.688  Sum_probs=12.4

Q ss_pred             ccccccccChHHHH
Q psy8271           2 YTQEAEFYNIAELV   15 (65)
Q Consensus         2 VLEEAEFYNI~~LI   15 (65)
                      +++||+||.|++|+
T Consensus       109 l~eEa~fy~i~~l~  122 (140)
T 2nz0_B          109 YDDELAFYGILPEI  122 (140)
T ss_dssp             HHHHHHHHTCCGGG
T ss_pred             HHHHHHHcCCChHH
Confidence            47999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	88.27
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	85.06
d1iyjb3	133	OB-fold domains of BRCA2 {Rat (Rattus norvegicus)	80.02

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=88.27  E-value=0.034  Score=32.86  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=16.3

Q ss_pred             ccccccccChHHHHHHHHHhhhhh
Q psy8271           2 YTQEAEFYNIAELVRLIKDRICTR   25 (65)
Q Consensus         2 VLEEAEFYNI~~LI~likdri~er   25 (65)
                      +++||+||-|.+   .|.|+++|+
T Consensus        77 l~~Ea~y~gi~~---~~~e~~~e~   97 (100)
T d1t1da_          77 FSEEIKFYELGE---NAFERYRED   97 (100)
T ss_dssp             HHHHHHHTTCCH---HHHHHHHHH
T ss_pred             HHHHHHHcCCCH---HHHHHHHHH
Confidence            578999999987   446777665

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.06  E-value=0.027  Score=33.37  Aligned_cols=24  Identities=17%  Similarity=0.355  Sum_probs=17.9

Q ss_pred             ccccccccChHHHH--HHHHHhhhhh
Q psy8271           2 YTQEAEFYNIAELV--RLIKDRICTR   25 (65)
Q Consensus         2 VLEEAEFYNI~~LI--~likdri~er   25 (65)
                      +++||+||-|.+++  .-|+++..+|
T Consensus        74 l~~Ea~fygi~~~~l~~cc~~~~~~~   99 (105)
T d1nn7a_          74 YDEELAFFGLIPEIIGDCCYEEYKDR   99 (105)
T ss_dssp             HHHHHHHHTCCSCCBCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            57899999998864  5567766554

>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: OB-fold domains of BRCA2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.02  E-value=0.31  Score=30.63  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=17.6

Q ss_pred             HhhhhhccccccccCCCceeeeeccch
Q psy8271          20 DRICTRDSLSVKDANKKHVYRVIQCHE   46 (65)
Q Consensus        20 dri~erd~~~~q~~~~k~VyRVLqc~e   46 (65)
                      .||.|||...+.. ..=-|-++++|..
T Consensus         5 rkI~E~D~~~s~~-mVLcVs~I~~~~~   30 (133)
T d1iyjb3           5 KKILERDDTAAKT-LVLCVSDIISLST   30 (133)
T ss_dssp             HHHHTTSSTTCCS-EEEEEEECCCCC-
T ss_pred             HHHHhCCCCccCc-EEEEEEEeeccCC
Confidence            5899999886554 3445668888743